VMD-L Mailing List
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About this archive
Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Sat May 03 2025 - 10:54:16 CDT
- VMD Main -> > Display -> Axes -> Origin 謟lem 諾T躌K (Sat May 03 2025 - 10:54:07 CDT)
- VMD TopoTools plugin is looking for a new maintainer Axel Kohlmeyer (Thu Apr 17 2025 - 01:01:48 CDT)
- CaFE plugin: Issues with PB solver Nadira Khatoon (Fri Apr 04 2025 - 03:58:16 CDT)
- change order of atoms in save trajectory from input Ryan Woltz (Tue Apr 01 2025 - 16:15:12 CDT)
- RE: number of line in the VMD TkConsole jimkress_58_at_kressworks.org (Sun Mar 23 2025 - 14:40:56 CDT)
- BFEE2 Segmentation fault Alex Blayney (Mon Mar 10 2025 - 04:57:18 CDT)
- molefacture isn't writing PDB coords CHARLES MCCALLUM (Mon Mar 03 2025 - 20:34:12 CST)
- Re: molefacture isn't writing PDB coords Josh Vermaas (Tue Mar 04 2025 - 09:18:20 CST)
- Re: molefacture isn't writing PDB coords CHARLES MCCALLUM (Tue Mar 04 2025 - 09:42:20 CST)
- Re: molefacture isn't writing PDB coords CHARLES MCCALLUM (Tue Mar 04 2025 - 11:23:32 CST)
- Re: molefacture isn't writing PDB coords Josh Vermaas (Tue Mar 04 2025 - 12:11:39 CST)
- Re: molefacture isn't writing PDB coords CHARLES MCCALLUM (Tue Mar 04 2025 - 13:21:26 CST)
- Re: molefacture isn't writing PDB coords CHARLES MCCALLUM (Tue Mar 04 2025 - 14:42:11 CST)
- Re: molefacture isn't writing PDB coords Pawe艂 K臋dzierski (Wed Mar 05 2025 - 02:06:02 CST)
- Re: molefacture isn't writing PDB coords Diego Gomes (Fri Mar 07 2025 - 09:50:39 CST)
- number of line in the VMD TkConsole jimkress_58_at_kressworks.org (Sat Mar 22 2025 - 21:48:00 CDT)
- Re: molefacture isn't writing PDB coords CHARLES MCCALLUM (Tue Mar 04 2025 - 09:42:20 CST)
- Re: molefacture isn't writing PDB coords Josh Vermaas (Tue Mar 04 2025 - 09:18:20 CST)
- Surf render crashing Edgar Galicia (Fri Feb 28 2025 - 15:25:06 CST)
- Error on VMD2 startup: cannot source vmdinit.tcl J茅r么me H茅nin (Wed Feb 26 2025 - 04:33:25 CST)
- VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Julien Devemy (Tue Feb 25 2025 - 06:59:41 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Diego Gomes (Tue Feb 25 2025 - 09:38:41 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Raman Preet Singh (Tue Feb 25 2025 - 12:03:27 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Isralewitz, Barry (Tue Feb 25 2025 - 13:14:06 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Diego Gomes (Tue Feb 25 2025 - 13:18:44 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Yjcoshc (Tue Feb 25 2025 - 14:20:58 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Diego Gomes (Tue Feb 25 2025 - 17:02:46 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Raman Preet Singh (Wed Feb 26 2025 - 01:27:33 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Raman Preet Singh (Wed Feb 26 2025 - 01:42:36 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Raman Preet Singh (Tue Feb 25 2025 - 12:03:27 CST)
- Re: VMD 2.0 Segmentation Fault on Ubuntu 24.04 and Containers Diego Gomes (Tue Feb 25 2025 - 09:38:41 CST)
- Passing frame number list to measure command Peter (Tue Feb 25 2025 - 00:29:42 CST)
- VMD on Sequoia Klimkowski, Valentine (Fri Feb 21 2025 - 09:51:54 CST)
- VMD 2.0 Issue Raman Preet Singh (Thu Feb 20 2025 - 00:50:29 CST)
- Fragment search method MD Simulation (Wed Feb 19 2025 - 05:49:03 CST)
- DMARC settings Bennion, Brian (Tue Feb 04 2025 - 13:01:38 CST)
- Hessian Error Maness, Peter (Tue Jan 28 2025 - 13:58:40 CST)
- Issues with fftk - Opt-charges (in VMD 1.9.4a57) Harini S H (Tue Jan 28 2025 - 05:19:31 CST)
- Using python interpreter in VMD Stipe Musta膰 (Mon Jan 20 2025 - 13:18:41 CST)
- Re: Using python interpreter in VMD Josh Vermaas (Tue Jan 21 2025 - 08:08:27 CST)
- Re: Using python interpreter in VMD Josh Vermaas (Tue Jan 21 2025 - 10:53:25 CST)
- Re: Using python interpreter in VMD Josh Vermaas (Tue Jan 21 2025 - 13:04:06 CST)
- Re: Using python interpreter in VMD Stipe Musta膰 (Wed Jan 22 2025 - 12:46:33 CST)
- Re: Using python interpreter in VMD Robin Betz (Wed Jan 22 2025 - 22:33:00 CST)
- Re: Using python interpreter in VMD Stipe Musta膰 (Mon Jan 27 2025 - 05:09:49 CST)
- Re: Using python interpreter in VMD Robin Betz (Tue Jan 28 2025 - 00:30:47 CST)
- Re: Using python interpreter in VMD Stipe Musta膰 (Tue Jan 28 2025 - 08:10:58 CST)
- Re: Using python interpreter in VMD Josh Vermaas (Tue Jan 21 2025 - 08:08:27 CST)
- Applying electric field only on ions Nakshatra Upadhyay (Mon Jan 13 2025 - 14:05:31 CST)
- MDFF with rRNA modifications Shirin (Thu Jan 09 2025 - 05:03:19 CST)
- Re: Using tprplugin Vermaas, Josh (Thu Dec 19 2024 - 14:25:08 CST)
- Using tprplugin Raman Preet Singh (Thu Dec 19 2024 - 11:44:46 CST)
- Online Colvars Dashboard mini-workshop - January 17 J茅r么me H茅nin (Sun Dec 15 2024 - 15:41:48 CST)
- ffTK Opt Charges Tab QM Target Data Section OUTPUT FILES Inquiry Joel Subach (Sat Dec 14 2024 - 11:40:53 CST)
- Issue with patching when running mutator in vmd Daniel Guion (Fri Dec 13 2024 - 16:19:19 CST)
- How to use QMtool to extract internal coordinates Ronit Sarangi (Mon Dec 02 2024 - 12:21:57 CST)
- focusing on a residue Sarfraz Ahmad (Thu Nov 21 2024 - 08:05:48 CST)
- VMD always open from home folder in Mac Roshan Shrestha (Wed Nov 20 2024 - 11:40:19 CST)
- black VMD opengl screen after replacing GPU Carlos Simmerling (Tue Nov 19 2024 - 16:10:46 CST)
- Tachyon download is offline Marcelo C. R. Melo (Sun Nov 17 2024 - 19:26:30 CST)
- << Using CPK/Rasmol color scheme >> I. Camps (Mon Nov 11 2024 - 15:25:49 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 08:51:11 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 08:50:43 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 04:19:32 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 04:19:58 CST)
- Volume considered in calculation of g(r) Rajahmundry Ganesh Kumar ch20d408 (Mon Nov 04 2024 - 06:37:36 CST)
- ffTK Water Int Tab .inp File dropping the Charge Value from -2 to 0 Inquiry? Joel Subach (Mon Nov 04 2024 - 09:16:41 CST)
- Partial black screen with Tachyon RTX RTRT Marcelo C. R. Melo (Mon Oct 28 2024 - 17:00:45 CDT)
- CUDA Error with Quicksurf Arango, Andres Santiago (Fri Oct 25 2024 - 14:39:37 CDT)
- ffTK Water Int tab generated .inp Charge 0 Mult 1 INQUIRY? Joel Subach (Mon Oct 21 2024 - 06:24:11 CDT)
- Automatic PSF Builder on Windows Mustafa Tekpinar (Sun Oct 13 2024 - 11:38:23 CDT)
- PBC wrap (close to the boundaries) Manuel Perez Escribano (Mon Oct 07 2024 - 12:55:43 CDT)
- Two different type of color set for potential map of overlapped molecules Nakshatra Upadhyay (Wed Oct 02 2024 - 04:13:38 CDT)
- FFTK partial charge assignment weak acid ONOH (HNO2) - Water Shift settings Marinus Veldhuizen (Wed Oct 02 2024 - 03:15:05 CDT)
- VMD 1.9.4 NAMDEnergy plugin query Roni Saiba (Thu Sep 26 2024 - 22:56:50 CDT)
- FFTK error - empty string not an operand of * Harini S H (Wed Sep 25 2024 - 13:46:40 CDT)
- .str file generation of nitrile group containing ligands Hideyuki Miyatake (Tue Sep 24 2024 - 20:55:26 CDT)
- Re: .str file generation of nitrile group containing ligands Josh Vermaas (Wed Sep 25 2024 - 09:09:41 CDT)
- Artifacts in GLSL rendering mode: deformation and noisy shading of atom spheres Zilong HE (Tue Sep 24 2024 - 02:00:00 CDT)
- Visualizing elastic network proteins Samapika Sahu (P20CY011) (Mon Sep 16 2024 - 13:49:31 CDT)
- FFTK charge optimisation: ORCA issue - cant use empty string as an operand of '*' Harini S H (Mon Sep 16 2024 - 08:36:56 CDT)
- retaining HETAM and conect records in pdb files Bennion, Brian (Fri Sep 13 2024 - 17:14:37 CDT)
- VMD ORCA 6 Update Mcguire, Kelly (Fri Sep 06 2024 - 17:09:29 CDT)
- FFTK Opt. Torsions End of File Issue Mcguire, Kelly (Wed Sep 04 2024 - 00:54:05 CDT)
- FFTK Opt. Torsions End of File Issue Mcguire, Kelly (Wed Sep 04 2024 - 00:29:13 CDT)
- FFTK Calc. Bonded ORCA Issue Mcguire, Kelly (Sat Aug 31 2024 - 17:54:33 CDT)
- Re: ffTK Opt Charge APPLICATION HALTING ON ERROR Inquiry Joel Subach (Sat Aug 24 2024 - 10:53:04 CDT)
- Problem with pbctools join Laura Ernstsen (Wed Aug 21 2024 - 03:41:33 CDT)
- Problem with pbctools join Laura Ernstsen (Wed Aug 21 2024 - 01:54:04 CDT)
- Re: Select atoms on surface of sphere Vermaas, Josh (Fri Aug 16 2024 - 11:11:34 CDT)
- Select atoms on surface of sphere Raman Preet Singh (Fri Aug 16 2024 - 09:05:20 CDT)
- residue torsion angles Alexei Rossokhin (Wed Aug 14 2024 - 05:55:57 CDT)
- altloc pdb entries Bennion, Brian (Tue Aug 13 2024 - 19:47:41 CDT)
- Reminder: Hands-On Workshop on Computational Biophysics in Auburn, AL Sinclair, Matt (Mon Aug 12 2024 - 13:10:07 CDT)
- pbc box unwrapping/wrapping error infinite bond angles/box sides Ryan Woltz (Fri Aug 09 2024 - 17:58:42 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 04 2024 - 05:04:33 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 04 2024 - 06:10:59 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Daniel Fellner (Fri Aug 16 2024 - 21:45:53 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sat Aug 17 2024 - 05:03:19 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 18 2024 - 04:47:22 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sat Nov 09 2024 - 23:39:54 CST)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Daniel Fellner (Fri Aug 16 2024 - 21:45:53 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 04 2024 - 06:10:59 CDT)
- Re: flipping a .inp file for a water interaction INQUIRY Daniel Fellner (Thu Aug 01 2024 - 20:48:58 CDT)
- CHGCAR file read in VMD SKM (Wed Jul 31 2024 - 22:06:25 CDT)
- selecting first instance of a ligand from several in pdb file Bennion, Brian (Sat Jul 27 2024 - 18:10:43 CDT)
- Re: selecting first instance of a ligand from several in pdb file Josh Vermaas (Mon Jul 29 2024 - 09:42:33 CDT)
- Re: selecting first instance of a ligand from several in pdb file Bennion, Brian (Mon Jul 29 2024 - 13:49:39 CDT)
- VMD reads vasp files with variable cells incorrectly Ronald Cohen (Mon Jul 29 2024 - 14:06:41 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Diego Gomes (Wed Jul 31 2024 - 10:10:20 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Wed Jul 31 2024 - 11:24:09 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Diego Gomes (Fri Aug 02 2024 - 12:06:08 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Fri Aug 02 2024 - 12:07:35 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Fri Aug 02 2024 - 13:58:51 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Sun Aug 04 2024 - 18:10:38 CDT)
- Re: selecting first instance of a ligand from several in pdb file Josh Vermaas (Mon Jul 29 2024 - 09:42:33 CDT)
- Query on networkview plugin Sruthi Sudhakar (Fri Jul 26 2024 - 07:13:21 CDT)
- fftk, ORCA, Bond and Angle Optimization, error As a subsequent Frequencies calculation has been requested Vardan Vardanyan (Tue Jul 23 2024 - 15:29:09 CDT)
- Re: fftk, ORCA, Bond and Angle Optimization, error As a subsequent Frequencies calculation has been requested Gumbart, JC (Thu Jul 25 2024 - 12:46:36 CDT)
- How can a known point be moved to the origin of the screen? Pacci Evaristo, Felipe Fabricio (Sun Jul 21 2024 - 23:19:36 CDT)
- Compiling CUDAMarchingCubes.cu build error Chris Taylor (Sun Jul 21 2024 - 20:53:43 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Vermaas, Josh (Mon Jul 22 2024 - 20:16:50 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Tue Jul 23 2024 - 20:02:18 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Vermaas, Josh (Wed Jul 24 2024 - 09:57:02 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Wed Jul 24 2024 - 20:14:04 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Josh Vermaas (Thu Jul 25 2024 - 08:23:05 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Thu Jul 25 2024 - 23:08:47 CDT)
- compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Chris Taylor (Fri Jul 26 2024 - 00:22:45 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Diego Gomes (Fri Jul 26 2024 - 09:31:43 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Chris Taylor (Fri Jul 26 2024 - 22:15:58 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Vermaas, Josh (Fri Jul 26 2024 - 10:21:01 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Chris Taylor (Fri Jul 26 2024 - 22:11:53 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Diego Gomes (Wed Jul 31 2024 - 10:19:04 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Tue Jul 23 2024 - 20:02:18 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Vermaas, Josh (Mon Jul 22 2024 - 20:16:50 CDT)
- Working with trajectory and updating frames dependents on current frame Laura X Sepulveda (Thu Jul 18 2024 - 12:52:06 CDT)
- TkConsol mohamed marzouk (Wed Jul 17 2024 - 15:02:37 CDT)
- Opening file after i downloaded vmd Micah Watson (Tue Jul 16 2024 - 20:33:06 CDT)
- pbc get -all fails Ronald Cohen (Tue Jul 16 2024 - 08:47:25 CDT)
- PBC issue Aditi Gotkhindikar (Tue Jul 16 2024 - 03:22:20 CDT)
- FFTK water molecules overlapped and charge optimisation error MARIA MILANESI (Mon Jul 15 2024 - 04:06:27 CDT)
- Re: ffTK Water Int Tab .inp File Flipping a Waters Coordinates Inquiry Joel Subach (Sun Jul 14 2024 - 12:19:46 CDT)
- ffTK Water Int Tab Optimization INTERACTION DISTANCE INQUIRY Joel Subach (Sun Jul 07 2024 - 05:35:12 CDT)
- loading multiple pdbs as frames and the filenames Ryan Woltz (Wed Jun 26 2024 - 13:03:11 CDT)
- wrapping atoms along a specific axis with pbctools SHIVAM TIWARI (Wed Jun 26 2024 - 03:30:19 CDT)
- Potential Bug Using NAMD Energy Plugin from the Command Line Jacob Graham (Tue Jun 18 2024 - 14:59:45 CDT)
- bonding across periodic walls Kevin Wittkowski (Thu Jun 13 2024 - 14:34:08 CDT)
- VMD receives Segmentation Fault After NVIDIA Driver Update GIANG NGUYEN (Fri Jun 07 2024 - 04:15:10 CDT)
- Display both-signed portions of isosurface jimkress_58_at_kressworks.org (Sun Jun 02 2024 - 01:02:52 CDT)
- Issue sending forces to atoms with IMD and LAMMPS Tom (Fri May 31 2024 - 12:55:12 CDT)
- Deleting portions of isosurfaces jimkress_58_at_kressworks.org (Thu May 23 2024 - 18:30:11 CDT)
- pbc wrap for nonbonded group of atoms SHRAVANI NETHI . (Mon May 20 2024 - 06:40:34 CDT)
- Deleting portions of isosurfaces jimkress_58_at_kressworks.org (Sat May 18 2024 - 00:12:45 CDT)
- namdenergy plugin energy values Ravithree Senanayake (Tue May 14 2024 - 12:48:23 CDT)
- NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Tue May 14 2024 - 08:06:59 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Tue May 14 2024 - 10:18:44 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Wed May 15 2024 - 07:07:12 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Wed May 15 2024 - 10:58:07 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Mon May 20 2024 - 14:05:58 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Roni Saiba (Mon May 20 2024 - 22:22:06 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Tue May 21 2024 - 09:03:17 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Wed May 15 2024 - 07:07:12 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Tue May 14 2024 - 10:18:44 CDT)
- Adding an Implicit Solvation Compatible with below ffTK suggested Methods INQUIRY Joel Subach (Tue May 07 2024 - 13:26:58 CDT)
- saving a PDB in a different order than it was loaded Ryan Woltz (Thu May 02 2024 - 21:30:39 CDT)
- Re: saving a PDB in a different order than it was loaded Axel Kohlmeyer (Thu May 02 2024 - 22:30:44 CDT)
- restarting calculations anytime within Equilibration and MD simulations steps in QwikMD Sefcikova, Jana (Tue Apr 30 2024 - 12:58:34 CDT)
- Reminder: Hands-On Workshop on Computational Biophysics in Auburn, AL Sinclair, Matt (Mon Apr 29 2024 - 12:39:54 CDT)
- is ! RI-MP2 6-31G* TightSCF opt autoaux rijcosx compatibile with ffTK CHARMM INQUIRY Joel Subach (Sat Apr 27 2024 - 02:03:24 CDT)
- ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 05:07:16 CDT)
- Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 06:37:51 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Vermaas, Josh (Wed Apr 24 2024 - 08:35:29 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 09:00:23 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Thu Apr 25 2024 - 05:42:29 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Josh Vermaas (Thu Apr 25 2024 - 09:23:26 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Thu Apr 25 2024 - 09:39:46 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Thu Apr 25 2024 - 10:17:20 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Sat May 11 2024 - 11:09:14 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Vermaas, Josh (Wed Apr 24 2024 - 08:35:29 CDT)
- Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 06:37:51 CDT)
- mol addfile CHARLES MCCALLUM (Thu Apr 18 2024 - 13:18:51 CDT)
- MD Videos and fixing the view into a certain perspective Lohry, David Patrick (Thu Apr 18 2024 - 10:53:24 CDT)
- VMD 1.9.4a53 on Windows 11 crashing frequently Lohry, David Patrick (Tue Apr 16 2024 - 17:45:45 CDT)
- Problems with 鈥楽urf鈥 as a 鈥淒rawing method鈥 for protein in VMD installed to a local folder Dmitry Suplatov (Thu Apr 11 2024 - 08:04:45 CDT)
- Can not run VMD in interactive mode on the supercomputer from Mac mohamed marzouk (Thu Apr 11 2024 - 01:16:59 CDT)
- VR Movies Collette Riviere (Wed Apr 03 2024 - 23:04:15 CDT)
- Index extractor Python Code Sam Fredrick (Wed Apr 03 2024 - 19:47:55 CDT)
- error during membrane mixing: can't read "toplist": no such variable Tvedt, Nathan (Fri Mar 29 2024 - 14:03:14 CDT)
- Atom selection based on center of sphere Peter (Tue Mar 26 2024 - 17:04:45 CDT)
- Can't connect to BioCORE M Suma (Tue Mar 26 2024 - 02:03:14 CDT)
- Atoms poorly guessed after applying a patch in Psfgen Kyle Billings (Mon Mar 25 2024 - 12:28:59 CDT)
- Re: Atoms poorly guessed after applying a patch in Psfgen Josh Vermaas (Mon Mar 25 2024 - 15:01:52 CDT)
- Problem to launch vmd1.9.4 (v2022-04-27) in wsl linux Roozbeh (Fri Mar 22 2024 - 20:17:28 CDT)
- NMWiz Arrow Colors Mcguire, Kelly (Thu Mar 21 2024 - 17:50:01 CDT)
- save/load visualization for data file 闈冲績鐟 (Sun Mar 17 2024 - 07:40:35 CDT)
- FFTK - Dihedral doesn't fit the QM target data francesco quilli (Mon Mar 11 2024 - 10:12:52 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Ernesto Aleksei Delgado Hurtado (Mon Mar 11 2024 - 17:21:46 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Mon Mar 11 2024 - 21:43:51 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data francesco quilli (Thu Mar 14 2024 - 02:55:24 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Daniel Fellner (Thu Mar 14 2024 - 03:51:15 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Thu Mar 14 2024 - 07:18:31 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Klimkowski, V (Thu Mar 14 2024 - 18:23:27 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data francesco quilli (Thu Mar 21 2024 - 08:27:40 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Daniel Fellner (Thu Mar 21 2024 - 18:25:16 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Fri Mar 22 2024 - 16:21:59 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Mon Mar 11 2024 - 21:43:51 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Ernesto Aleksei Delgado Hurtado (Mon Mar 11 2024 - 17:21:46 CDT)
- Re: looking for help to solve FATAL ERRORQ=BC=9A_Didn=27t_find_vdw_parameter_for_atom_type_C11?= Josh Vermaas (Thu Mar 07 2024 - 13:18:13 CST)
- issue with wrapping water molecules Yuan Xue (Wed Mar 06 2024 - 20:47:01 CST)
- How to define an atom selection for a dynamic space Jacob Layton (Wed Mar 06 2024 - 13:43:16 CST)
- looking for help to solve FATAL ERROR锛 Didn't find vdw parameter for atom type C11 Yixin Chen (Wed Mar 06 2024 - 08:12:31 CST)
- VR Movie Rendering Collette Riviere (Tue Mar 05 2024 - 22:05:16 CST)
- Water molecules cling to protein in last frame Yuan Xue (Sat Mar 02 2024 - 10:42:54 CST)
- Problems generating movies for vmd 1.9.4a53 Kung, Ryan (Thu Feb 29 2024 - 09:54:53 CST)
- Fwd: bond lengths and angle display SKM (Wed Feb 28 2024 - 21:43:52 CST)
- How to access the Lable tab's info of atoms? Big Chungus (Wed Feb 28 2024 - 20:57:11 CST)
- Error in Molefacture 2.0: Unable to write PSF and PDB files Sarthak Mohanty (Mon Feb 26 2024 - 02:19:07 CST)
- bug when starting VMD on MACOS ARM Maud Jusot (Wed Feb 21 2024 - 08:24:02 CST)
- Anyone Completed ffTK Calc Bonded Tab using ORCA gbw instead of Gaussian chk? Joel Subach (Mon Feb 19 2024 - 14:08:30 CST)
- atomselection near periodic boundaries Amir (Sun Feb 18 2024 - 14:54:49 CST)
- VMD Programmer position available at TCBG / University of Illinois Isralewitz, Barry (Thu Feb 15 2024 - 08:54:20 CST)
- Re: ffTK Calc Bonded Tab gbw file not recognized INQUIRY Joel Subach (Wed Feb 14 2024 - 05:40:24 CST)
- ffTK Opt. Charge Run QM Target Data WATER INTERACTION ENERGY DATA INQUIRY Joel Subach (Tue Feb 06 2024 - 09:43:16 CST)
- parseFEP and solvate pulgins in VMD 1.9.3 Gianluca Interlandi (Mon Feb 05 2024 - 12:58:01 CST)
- unable to open VMD as normal He, Xibing (Mon Feb 05 2024 - 11:41:38 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Mon Feb 05 2024 - 16:58:07 CST)
- Re: unable to open VMD as normal He, Xibing (Mon Feb 05 2024 - 17:35:11 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Mon Feb 05 2024 - 19:26:07 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 09:36:19 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Tue Feb 06 2024 - 10:46:16 CST)
- Re: unable to open VMD as normal Diego Gomes (Tue Feb 06 2024 - 12:25:08 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 12:37:10 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 14:42:07 CST)
- Re: unable to open VMD as normal Diego Gomes (Tue Feb 06 2024 - 15:07:22 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 15:28:26 CST)
- Re: unable to open VMD as normal Bennion, Brian (Tue Feb 06 2024 - 17:42:31 CST)
- RE: unable to open VMD as normal Bennion, Brian (Tue Feb 06 2024 - 11:57:41 CST)
- Re: unable to open VMD as normal Diego Gomes (Wed Feb 07 2024 - 02:13:14 CST)
- Re: unable to open VMD as normal He, Xibing (Mon Feb 05 2024 - 17:35:11 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Mon Feb 05 2024 - 16:58:07 CST)
- Coarse Grain Setup Mcguire, Kelly (Mon Feb 05 2024 - 00:01:55 CST)
- ffTK Opt. Charge Run Optimization Error PSF File Problem INQUIRY Joel Subach (Sat Feb 03 2024 - 08:36:02 CST)
- NAMDenergy plugin Alexei Rossokhin (Fri Jan 26 2024 - 07:38:58 CST)
- Re: working out the output files from Timeline jing liang (Wed Jan 24 2024 - 23:58:11 CST)
- working out the output files from Timeline jing liang (Mon Jan 22 2024 - 11:44:48 CST)
- ffTK charge optimization error francesco quilli (Mon Jan 08 2024 - 08:38:31 CST)
- << Hbonds distances >> I. Camps (Fri Jan 05 2024 - 14:06:06 CST)
- assigning segment id or a unique identity in lammps data file SHIVAM TIWARI (Wed Jan 03 2024 - 11:27:38 CST)
- M1 Mac menu issues Corey Taylor (Wed Dec 27 2023 - 05:22:48 CST)
- Total charge from *.psf alone Francesco Pietra (Thu Dec 21 2023 - 15:07:35 CST)
- Visualization of new bonds created in LAMMPS simulation Roni Saiba (Thu Dec 21 2023 - 01:05:23 CST)
- Re: ffTK Water Interactions Ligand Atom Hydrogen Bond Acceptors Acting as Donors Inquiry Joel Subach (Thu Dec 14 2023 - 06:19:45 CST)
- Missing operand error in vmd pathways plugin Ananya Nayak (Thu Dec 14 2023 - 01:29:56 CST)
- Re: ffTK vmd Index Atom Numbering via ORCA .inp and .out Files Inquiry Joel Subach (Wed Dec 13 2023 - 03:46:25 CST)
- (no subject) Ananya Nayak (Tue Dec 12 2023 - 23:06:48 CST)
- Please help me understand the .dx file generated when using PME Electrostatics Analysis Jester Itliong (Sat Dec 09 2023 - 11:46:29 CST)
- VMD for macOS -- easy install with new code-signed versions Isralewitz, Barry (Fri Dec 01 2023 - 19:29:06 CST)
- VMD for macOS - easy install with new code-signed versions Barry Isralewitz (Fri Dec 01 2023 - 17:29:19 CST)
- how to control "offset" and "midpoint" of color scale simultaneously using tk-console Suleman Ansari (P19PH004) (Fri Dec 01 2023 - 00:54:05 CST)
- Startup position of OpenGL Display window and VMD console window 鏉庡畨閭 (Wed Nov 29 2023 - 20:44:29 CST)
- Re: Interactive MD - 3DSystems Touch Trollmann, Marius (Tue Nov 28 2023 - 01:44:48 CST)
- Interactive MD - 3DSystems Touch Trollmann, Marius (Sun Nov 26 2023 - 07:19:56 CST)
- SASA Cutoff Value for Residues on Protein Surface Kevin Lin (Tue Nov 21 2023 - 18:08:58 CST)
- Issue assigning impropers with topotools SHIVAM TIWARI (Tue Nov 21 2023 - 00:21:27 CST)
- Re: How to evaluate VMD performance properly? Vermaas, Josh (Mon Nov 20 2023 - 08:57:13 CST)
- How to evaluate VMD performance properly? Frederico De Santana Pontes (Mon Nov 20 2023 - 06:03:40 CST)
- Smoothing PBC jumps across PBC Patrick Charchar (Wed Nov 15 2023 - 23:27:39 CST)
- Commands runs manually but not as a script Bill McIntyre (Fri Nov 03 2023 - 10:58:11 CDT)
- STRIDE breaks after 100,000 protein atoms Vasista (Wed Nov 01 2023 - 06:36:38 CDT)
- Error on VMD Tkconsole : syntax error near unexpected token Yixin Chen (Tue Oct 31 2023 - 10:55:22 CDT)
- VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Mon Oct 30 2023 - 19:13:02 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Victor Kwan (Tue Oct 31 2023 - 16:44:58 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Tue Oct 31 2023 - 17:05:44 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Victor Kwan (Tue Oct 31 2023 - 20:31:14 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Tue Oct 31 2023 - 21:41:13 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Diego Gomes (Thu Nov 02 2023 - 14:41:33 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Thu Nov 02 2023 - 15:01:03 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Axel Kohlmeyer (Thu Nov 02 2023 - 16:27:46 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Thu Nov 02 2023 - 16:46:05 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Axel Kohlmeyer (Thu Nov 02 2023 - 16:54:02 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Fri Dec 08 2023 - 16:17:17 CST)
- Re: VMD openGL over ssh from a server with NVIDIA Pawe艂 K臋dzierski (Fri Nov 03 2023 - 02:36:17 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Tue Oct 31 2023 - 17:05:44 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Victor Kwan (Tue Oct 31 2023 - 16:44:58 CDT)
- MacOS VMD1.9.4.a55 crashes- malloc: can't allocate region Subha Kalyaanamoorthy (Mon Oct 30 2023 - 11:01:09 CDT)
- Molefacture 2 does not generate angles & dihedrals Pawe艂 K臋dzierski (Mon Oct 30 2023 - 02:54:26 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Mon Oct 30 2023 - 07:22:18 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Jirui Yang (Mon Oct 30 2023 - 12:20:33 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Diego Gomes (Thu Nov 02 2023 - 12:21:42 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Fri Nov 03 2023 - 07:32:57 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Fri Nov 10 2023 - 02:43:50 CST)
- Re: Molefacture 2 does not generate angles & dihedrals Diego Gomes (Mon Nov 13 2023 - 10:41:45 CST)
- Re: Molefacture 2 does not generate angles & dihedrals Jirui Yang (Mon Oct 30 2023 - 12:20:33 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Mon Oct 30 2023 - 07:22:18 CDT)
- Creating Dummy Atoms in VMD Using TCL Script Kevin Lin (Fri Oct 27 2023 - 15:16:45 CDT)
- ffTK Tabs for Just Dihedral Optimization Can I Just Use Scan and Opt Tabs Inquiry? Joel Subach (Fri Oct 27 2023 - 11:18:02 CDT)
- ffTK Scan Torsions Scan +/-and Step Size Inquiry which are Best Values? Joel Subach (Fri Oct 27 2023 - 11:12:38 CDT)
- Re: ffTK Opt Torsions Tab Hysteresis Problem in the QM Calculation Inquiry or Phase Periodicity error? Joel Subach (Thu Oct 26 2023 - 11:09:03 CDT)
- Tcl/Tk misbehave after upgrading MacOS to Sonoma (14.0) Cassiano Langini (Mon Oct 23 2023 - 05:17:56 CDT)
- Script to Build Cyclic Peptides Bill McIntyre (Sun Oct 22 2023 - 17:38:30 CDT)
- Re: Script to Build Cyclic Peptides Josh (Mon Oct 23 2023 - 07:57:20 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Tue Oct 24 2023 - 00:52:02 CDT)
- Re: Script to Build Cyclic Peptides Vermaas, Josh (Tue Oct 24 2023 - 08:29:48 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Wed Oct 25 2023 - 06:20:02 CDT)
- Re: Script to Build Cyclic Peptides Josh (Wed Oct 25 2023 - 09:01:37 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Thu Oct 26 2023 - 12:34:12 CDT)
- Re: Script to Build Cyclic Peptides Josh (Thu Oct 26 2023 - 13:53:06 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Sat Oct 28 2023 - 18:13:51 CDT)
- Re: Script to Build Cyclic Peptides Vermaas, Josh (Mon Oct 30 2023 - 07:39:24 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Mon Oct 30 2023 - 10:58:32 CDT)
- Re: Script to Build Cyclic Peptides Patrick Charchar (Thu Oct 26 2023 - 17:31:26 CDT)
- Re: Script to Build Cyclic Peptides Patrick Charchar (Thu Oct 26 2023 - 19:02:23 CDT)
- Re: Script to Build Cyclic Peptides Vermaas, Josh (Fri Oct 27 2023 - 17:15:02 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Tue Oct 24 2023 - 00:52:02 CDT)
- Re: Script to Build Cyclic Peptides Josh (Mon Oct 23 2023 - 07:57:20 CDT)
- ffTK Opt Torsions Refine Section i.e. PERIODICITY, PHASE SHIFT Values? Joel Subach (Sun Oct 22 2023 - 07:21:10 CDT)
- ffTK Parameter Selection i.e. just Scan and Opt Torsion Selection Viable? Joel Subach (Wed Oct 18 2023 - 06:13:50 CDT)
- Re: ffTK Parameter Selection i.e. just Scan and Opt Torsion Selection Viable? Joel Subach (Tue Feb 20 2024 - 06:09:32 CST)
- Update structure on-the-fly Raman Preet Singh (Mon Oct 16 2023 - 02:18:14 CDT)
- VMD APBS Plugin Issues Kevin Lin (Sun Oct 15 2023 - 19:15:01 CDT)
- ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Fri Oct 13 2023 - 06:52:49 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Fri Oct 13 2023 - 21:49:24 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Sat Oct 14 2023 - 08:47:54 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Sun Oct 15 2023 - 11:19:51 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Fri Oct 20 2023 - 09:19:14 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Josh (Fri Oct 20 2023 - 09:32:45 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Fri Oct 20 2023 - 09:39:13 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Fri Oct 20 2023 - 16:45:25 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Sat Oct 21 2023 - 07:09:38 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Fri Oct 13 2023 - 21:49:24 CDT)
- ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Wed Oct 11 2023 - 09:05:22 CDT)
- Total H-bond occupancy analysis Neena Susan Eappen (Mon Sep 25 2023 - 14:14:33 CDT)
- <<cionize on macOS error>> ROP覰-PALACIOS G. G. (Sun Sep 24 2023 - 06:57:26 CDT)
- Re: <<cionize on macOS error>> Castro Martinez, Camila (Mon Sep 25 2023 - 01:49:52 CDT)
- Re: <<cionize on macOS error>> Rop贸n-Palacios G. (Mon Sep 25 2023 - 14:52:05 CDT)
- Re: Re: <<cionize on macOS error>> Axel Kohlmeyer (Mon Sep 25 2023 - 15:49:35 CDT)
- Re: Re: <<cionize on macOS error>> Rop贸n-Palacios G. (Mon Sep 25 2023 - 15:59:39 CDT)
- Re: Re: <<cionize on macOS error>> Axel Kohlmeyer (Mon Sep 25 2023 - 16:04:06 CDT)
- Re: Re: <<cionize on macOS error>> Rop贸n-Palacios G. (Mon Sep 25 2023 - 16:24:51 CDT)
- Re: Re: <<cionize on macOS error>> Diego Gomes (Mon Sep 25 2023 - 17:13:46 CDT)
- Re: Re: <<cionize on macOS error>> Axel Kohlmeyer (Mon Sep 25 2023 - 17:14:53 CDT)
- Re: Re: <<cionize on macOS error>> Hasdemir, Hale Siir (Mon Sep 25 2023 - 17:20:19 CDT)
- Re: Re: <<cionize on macOS error>> Rop贸n-Palacios G. (Mon Sep 25 2023 - 17:23:40 CDT)
- Re: Re: <<cionize on macOS error>> Rop贸n-Palacios G. (Mon Sep 25 2023 - 17:32:31 CDT)
- Re: <<cionize on macOS error>> Rop贸n-Palacios G. (Mon Sep 25 2023 - 14:52:05 CDT)
- Re: <<cionize on macOS error>> Castro Martinez, Camila (Mon Sep 25 2023 - 01:49:52 CDT)
- <<measure command>> Rop贸n-Palacios G. (Thu Sep 21 2023 - 16:21:11 CDT)
- Angle between a vector and a plane Castro Martinez, Camila (Wed Sep 20 2023 - 02:53:52 CDT)
- Generate Trajectory using Gaussian Cube Files Jia-Yang Lim (Tue Sep 19 2023 - 23:51:39 CDT)
- Viewing Van der Waals bonds of a protein ligand in complex inquiry Joel Subach (Sun Sep 10 2023 - 07:38:30 CDT)
- reading chain labels from amber prmtop Baker, Joseph (Fri Sep 08 2023 - 07:15:42 CDT)
- Error in porcupine plot Sanjay Kumar Paul (Thu Aug 31 2023 - 04:06:46 CDT)
- How to shortening bonds length in a molecule ? maxim todoru (Thu Aug 31 2023 - 01:28:26 CDT)
- Issues with urea and autopsf Simone Gargano (Tue Aug 29 2023 - 07:17:49 CDT)
- Pulling and Anchoring residues Jeevan Patra (Wed Aug 16 2023 - 06:33:45 CDT)
- define custom colours for posX gradient Yogesh Sharma (Wed Aug 16 2023 - 06:30:49 CDT)
- Unable to use plots with QwikMD Javier Badilla (Fri Aug 11 2023 - 08:09:42 CDT)
- FATAL ERROR: UNABLE TO FIND ANGLE PARAMETERS FOR HB2 CT1 NH3 (ATOMS 1 5 8) SONAL GAHLAWAT (Thu Aug 10 2023 - 13:32:17 CDT)
- Diffusion Coefficient calculation Nakshatra Upadhyay (Wed Aug 09 2023 - 11:25:19 CDT)
- Custom selection variable Bart Bruininks (Tue Aug 08 2023 - 09:12:23 CDT)
- QwikMD - Steered Molecular Dynamics Query Jeevan Patra (Sun Jul 30 2023 - 09:18:11 CDT)
- ffTK Load Dihedral Scan Output for Visualization Inquiry Joel Subach (Sun Jul 30 2023 - 07:05:50 CDT)
- Drawing ellipsoids Johannes Haataja (Tue Jul 25 2023 - 14:10:29 CDT)
- converting NAMD trajectories GAGANJYOT KAUR BAKSHI (Tue Jul 25 2023 - 01:46:59 CDT)
- Re: keeping two ligands in a box Vermaas, Josh (Sun Jul 23 2023 - 03:45:49 CDT)
- keeping two ligands in a box Ackad, Edward (Sat Jul 22 2023 - 09:00:19 CDT)
- Constant pH MD with NAMD Hoang, Oanh Tu (Wed Jul 19 2023 - 08:15:22 CDT)
- FW: VMD Programmer Position available at TCBG/UIUC Tajkhorshid, Emad (Thu Jul 13 2023 - 09:20:35 CDT)
- (no subject) Alexei Rossokhin (Mon Jul 10 2023 - 07:26:50 CDT)
- VMD error - molefacture Hasdemir, Hale Siir (Fri Jul 07 2023 - 10:00:29 CDT)
- Problem with converting from lammpstrj to dcd using CatDCD Zuzanna Jedlinska (Fri Jul 07 2023 - 08:54:50 CDT)
- covalent bond Alexei Rossokhin (Wed Jul 05 2023 - 09:18:37 CDT)
- CHARMM36 and water: can the H-H "bond" be added to the wat.top file used by solvate.tcl? Cindy Cregier (Wed Jul 05 2023 - 01:14:37 CDT)
- OH- Drude parameters Shah, Tanooj (Mon Jul 03 2023 - 17:09:42 CDT)
- Fix the Header of DCD File After Merging Multiple Trajectories Efthymiou, Christos (Mon Jul 03 2023 - 04:19:11 CDT)
- Re: Concatenate DCD Files with Different Numbers of Atoms Nick Bayhi (Sat Jul 01 2023 - 17:32:29 CDT)
- Concatenate DCD Files with Different Numbers of Atoms Efthymiou, Christos (Sat Jul 01 2023 - 16:04:35 CDT)
- location of light sources in vmd Yogesh Sharma (Mon Jun 26 2023 - 01:58:45 CDT)
- Has anyone successfully executed ORCA instead of Gaussian for ffTK? Joel Subach (Sun Jun 25 2023 - 06:28:49 CDT)
- network analysis for gromacs jing liang (Sat Jun 24 2023 - 02:44:51 CDT)
- Re: ffTK Opt Torsions .log file input Inquiry Joel Subach (Thu Jun 22 2023 - 07:43:40 CDT)
- network analysis on Windows 11 jing liang (Thu Jun 22 2023 - 04:51:45 CDT)
- ffTK Scan Torsions Generate Dihedral Scan Input OUTPUT Inquiry Joel Subach (Mon Jun 19 2023 - 09:50:49 CDT)
- Converting namd trajectory to desmond trajectory GAGANJYOT KAUR BAKSHI (Tue Jun 13 2023 - 14:56:58 CDT)
- ORCA within ffTK Dihedral Angle Optimization Inquiry Joel Subach (Sat Jun 10 2023 - 05:11:26 CDT)
- Two postdoctoral positions available at the computational core of the Pittsburgh Center for HIV Protein Interactions External Juan R. Perilla (Thu Jun 08 2023 - 08:37:45 CDT)
- Tachyon dat file as input? Shayna Hilburg (Thu Jun 01 2023 - 01:09:47 CDT)
- Convert trajectory GAGANJYOT KAUR BAKSHI (Wed May 24 2023 - 21:08:06 CDT)
- Reminder: Hands-On Workshop On Computational Biophysics in Auburn, AL Mariano Spivak (Fri May 19 2023 - 12:31:05 CDT)
- VMD DMS plugin Siyoung Kim (Mon May 15 2023 - 09:08:38 CDT)
- VMD DMS plugin Siyoung Kim (Mon May 15 2023 - 09:03:32 CDT)
- version 1.9.3 elham sattarinezhad (Fri May 12 2023 - 09:31:35 CDT)
- Trajectory Smoothing and length of hydrogen bonds Gabby Leonard (Thu May 11 2023 - 14:54:23 CDT)
- Question about using fftk with files from QM calculations from Gaussian 16 Matteo Lambrughi (Thu May 11 2023 - 02:52:31 CDT)
- VMD BFEE namdbin error Janni Christensen (Tue May 09 2023 - 02:03:44 CDT)
- Cartoon representation in VMD with amber netcd file Hoang, Oanh Tu (Fri May 05 2023 - 05:41:15 CDT)
- Restarting a simulation GAGANJYOT KAUR BAKSHI (Wed May 03 2023 - 06:29:22 CDT)
- Missing Bond at Periodic Boundary Reza Namakian (Mon May 01 2023 - 09:04:06 CDT)
- Random Sudden Increase in RMSD Near End of Simulation Efthymiou, Christos (Fri Apr 28 2023 - 01:58:28 CDT)
- Formatting of text in label Roshan Shrestha (Fri Apr 21 2023 - 09:14:41 CDT)
- Selecting atom of given residue in namdenergy plugin Francesco Pietra (Wed Apr 19 2023 - 05:39:58 CDT)
- Re: Re: Executing ORCA within ffTK Opt Geometry Tab Inquiry Joel Subach (Tue Apr 18 2023 - 11:41:35 CDT)
- Re: Executing ORCA within ffTK Opt Geometry Tab Inquiry Joel Subach (Tue Apr 18 2023 - 07:53:13 CDT)
- Combining multiple psf into one for collagen protein SONAL GAHLAWAT (Mon Apr 17 2023 - 11:42:20 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Wed Apr 12 2023 - 09:30:56 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Thu Apr 13 2023 - 05:05:45 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Thu Apr 13 2023 - 08:11:14 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Fri Apr 14 2023 - 02:41:53 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Fri Apr 14 2023 - 03:57:24 CDT)
- Re: Python crash VMD1.9.4 John Stone (Mon Apr 17 2023 - 11:04:54 CDT)
- Re: Python crash VMD1.9.4 Josh Vermaas (Mon Apr 17 2023 - 12:59:42 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Tue Apr 18 2023 - 03:27:39 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Tue Apr 18 2023 - 04:46:06 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Tue Apr 18 2023 - 08:10:33 CDT)
- Re: Python crash VMD1.9.4 Josh Vermaas (Tue Apr 18 2023 - 09:20:51 CDT)
- Re: Python crash VMD1.9.4 Daipayan Sarkar (Tue Apr 18 2023 - 10:25:23 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Thu Apr 13 2023 - 08:11:14 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Thu Apr 13 2023 - 05:05:45 CDT)
- Python crash VMD1.9.4 Dominique Mias-Lucquin (Wed Apr 12 2023 - 08:02:19 CDT)
- Create bonds in VMD Rajorshi Chattopadhyay (Tue Apr 11 2023 - 15:21:54 CDT)
- Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 07:47:02 CDT)
- Re: Gaussian09 install on macOS Inquiry Axel Kohlmeyer (Tue Apr 11 2023 - 08:31:28 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 08:35:27 CDT)
- Re: Gaussian09 install on macOS Inquiry Giacomo Fiorin (Tue Apr 11 2023 - 10:03:39 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 10:10:13 CDT)
- Re: Gaussian09 install on macOS Inquiry Giacomo Fiorin (Tue Apr 11 2023 - 10:29:57 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 10:37:57 CDT)
- Re: Gaussian09 install on macOS Inquiry Gumbart, JC (Tue Apr 11 2023 - 21:36:48 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 23:19:34 CDT)
- Re: Gaussian09 install on macOS Inquiry Gumbart, JC (Wed Apr 12 2023 - 01:03:13 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Wed Apr 12 2023 - 01:28:05 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Thu Apr 13 2023 - 11:06:06 CDT)
- Re: Gaussian09 install on macOS Inquiry Gumbart, JC (Thu Apr 13 2023 - 12:14:05 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Fri Apr 14 2023 - 02:49:28 CDT)
- Re: Gaussian09 install on macOS Inquiry Axel Kohlmeyer (Tue Apr 11 2023 - 08:31:28 CDT)
- Re: fftk-Tutorial Writing psf and pdb files from a CGenFF .str File Inquiry Joel Subach (Fri Apr 07 2023 - 07:24:56 CDT)
- Render straight to ffmpeg/NVENC ? Diego Gomes (Wed Apr 05 2023 - 15:08:10 CDT)
- Node selection in network view GAGANJYOT KAUR BAKSHI (Tue Apr 04 2023 - 00:29:10 CDT)
- vmd mpi parallel rendering with SLURM Ren茅 Hafner TUK (Thu Mar 30 2023 - 02:28:18 CDT)
- Re: vmd mpi parallel rendering with SLURM John Stone (Wed Apr 05 2023 - 23:38:27 CDT)
- Re: vmd mpi parallel rendering with SLURM Chris Taylor (Thu Apr 06 2023 - 21:14:08 CDT)
- Re: vmd mpi parallel rendering with SLURM Ren茅 Hafner TUK (Sun Apr 09 2023 - 10:02:02 CDT)
- CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu Chris Taylor (Sun Apr 09 2023 - 22:07:14 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu John Stone (Mon Apr 10 2023 - 00:58:11 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu Chris Taylor (Mon Apr 10 2023 - 20:08:42 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu John Stone (Mon Apr 17 2023 - 11:13:20 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu Chris Taylor (Mon Apr 17 2023 - 22:40:59 CDT)
- Re: vmd mpi parallel rendering with SLURM Chris Taylor (Thu Apr 06 2023 - 21:14:08 CDT)
- Re: vmd mpi parallel rendering with SLURM John Stone (Wed Apr 05 2023 - 23:38:27 CDT)
- Cannot open parm7 file through tcl script, but can open via graphic interface Fernando Amrein (Mon Mar 27 2023 - 19:15:54 CDT)
- Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Mon Mar 27 2023 - 07:25:41 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:04:16 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:06:57 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Tue Mar 28 2023 - 18:28:01 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:54:11 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Tue Mar 28 2023 - 19:30:06 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 19:31:17 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Tue Mar 28 2023 - 19:33:46 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:06:57 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:04:16 CDT)
- Atoms dropped on running AutoPSF Priyanshu Gupta (Fri Mar 24 2023 - 12:52:46 CDT)
- Show tcl console selections in VMD graphical display Alexandre Suman de Ara煤jo (Thu Mar 23 2023 - 04:06:05 CDT)
- Select waters inside cylinder ROP脫N-PALACIOS G. (Tue Mar 21 2023 - 16:25:47 CDT)
- calculation of rotation angle Sangita Kachhap (Tue Mar 21 2023 - 13:05:05 CDT)
- Re: No ffTK .gau Extension in Determine File Type in VMD for Visualization Problem? Joel Subach (Fri Mar 17 2023 - 16:04:23 CDT)
- Re: Re: No ffTK .gau Extension in Determine File Type in VMD for Visualization Problem? Gumbart, JC (Wed Mar 22 2023 - 16:40:10 CDT)
- PDB with CONECT records Raman Preet Singh (Tue Mar 14 2023 - 08:18:34 CDT)
- ffTK Inquiry Joel Subach (Mon Mar 13 2023 - 20:28:51 CDT)
- Two questions: reordering molecule IDs and deleting frames with TCL commands Strahs, Dr. Daniel Bernard (Sat Mar 11 2023 - 17:03:09 CST)
- Error with Catdcd Efthymiou, Christos (Tue Mar 07 2023 - 16:47:47 CST)
- can't build VMD on MacOs Ventura: use of undeclared identifier 'msms' Alexander Beerhoff (Tue Mar 07 2023 - 08:56:42 CST)
- helix content colvar for a 3-10 helix Diship Srivastava (Tue Mar 07 2023 - 00:46:08 CST)
- Autopsf Not Generating Atom Numbers Beyond 99999 Stefan Lyne Oliver (Wed Mar 01 2023 - 13:41:26 CST)
- New Cartoon representation - Ubuntu 16.zdsmith_at_gmail.com (Wed Mar 01 2023 - 12:09:48 CST)
- Font size of the colorbar legends and rotation of the colorscale bar bibhab majumdar (Sun Feb 26 2023 - 22:44:56 CST)
- Rotation of the color scale bar in VMD bibhab majumdar (Sun Feb 26 2023 - 22:21:11 CST)
- Set constant length scale to molecules in boxes of different sizes Pacci Evaristo, Felipe Fabricio (Sun Feb 26 2023 - 14:39:37 CST)
- Question about NMD file visualization Sruthi Sudhakar (Sun Feb 26 2023 - 04:18:50 CST)
- Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: 鈥極SPModel鈥 does not name a typ Alexander Beerhoff (Thu Feb 23 2023 - 22:47:16 CST)
- Re: Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: 鈥極SPModel鈥 does not name a typ Axel Kohlmeyer (Thu Feb 23 2023 - 23:55:57 CST)
- Re: Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: 鈥極SPModel鈥 does not name a typ Vermaas, Josh (Fri Feb 24 2023 - 00:19:28 CST)
- Problem with make_trajectory_movie_files script for lammps trajectory with -dispdev text Marin Paolo Virgile Vatin (Fri Feb 17 2023 - 04:46:15 CST)
- VMD 64-bit Windows OSPRay Initialization Error Possible Fix Mortimer Hemmit (Tue Feb 14 2023 - 16:12:48 CST)
- Viewing post script images GAGANJYOT KAUR BAKSHI (Mon Feb 13 2023 - 05:43:29 CST)
- ChatGPT knows basic VMD scripting... John Stone (Sun Feb 12 2023 - 22:45:01 CST)
- VMD on Windows 11 Pol Garcia-Segura (Wed Feb 08 2023 - 11:58:56 CST)
- BFEE Francesco Coppola (Wed Feb 08 2023 - 11:33:42 CST)
- 1-Nanotube Zigzag and 2-saving coordinates problem srikasi.qut_at_gmail.com (Tue Feb 07 2023 - 00:00:41 CST)
- Uninstalling VMD Sarthak Mohanty (Mon Feb 06 2023 - 01:40:43 CST)
- fftk Improper fitting Rizal Sinaga (Thu Feb 02 2023 - 18:12:52 CST)
- How to change stride of trajectory initially loaded in CaFE Plugin Efthymiou, Christos (Thu Feb 02 2023 - 17:45:36 CST)
- Nanopore Sequencing Tutorial Problem Andrew Doig (Thu Feb 02 2023 - 19:07:57 CST)
- Image render in VMD GAGANJYOT KAUR BAKSHI (Tue Jan 31 2023 - 05:31:53 CST)
- Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Mon Jan 30 2023 - 20:16:39 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Josh Vermaas (Tue Jan 31 2023 - 08:58:37 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Tue Jan 31 2023 - 13:16:41 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Vermaas, Josh (Tue Jan 31 2023 - 14:04:57 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Tue Jan 31 2023 - 16:48:10 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ John Stone (Tue Jan 31 2023 - 22:30:35 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Wed Feb 01 2023 - 01:10:25 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Vermaas, Josh (Wed Feb 01 2023 - 08:23:56 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Wed Feb 01 2023 - 13:51:43 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Tue Jan 31 2023 - 13:16:41 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Rudy Richardson (Tue Jan 31 2023 - 10:22:04 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Josh Vermaas (Tue Jan 31 2023 - 08:58:37 CST)
- bash calling multiple python scripts that open vmd pauses Ryan Woltz (Sat Jan 21 2023 - 04:30:13 CST)
- fftk, charge optimization, fragmentation Vardan Vardanyan (Thu Jan 19 2023 - 13:39:33 CST)
- get "x y z" from smoothed coordinates Diego Gomes (Wed Jan 18 2023 - 15:20:37 CST)
- Regarding Network Analysis GAGANJYOT KAUR BAKSHI (Wed Jan 18 2023 - 02:01:29 CST)
- PCA/NMA/Secondary structure analysis with bigdcd Hocine el khaoudi enyoury (Tue Jan 17 2023 - 03:53:21 CST)
- Vmd Hardware Requirements long MD visual/analysis Hocine el khaoudi enyoury (Mon Jan 16 2023 - 07:27:18 CST)
- TCL Script for PCA? Efthymiou, Christos (Mon Jan 09 2023 - 15:24:06 CST)
- Aligning of ions and DNA angad sharma (Sun Jan 08 2023 - 03:00:11 CST)
- measure sasa algorithm? Alvea Tasneem (Fri Jan 06 2023 - 11:25:23 CST)
- Labels on top of atoms Pierpaolo Pravatto (Mon Jan 02 2023 - 02:27:13 CST)
- coloring Fateme Aghaei (Fri Dec 30 2022 - 15:45:45 CST)
- << Centering/aligning several molecules >> I. Camps (Thu Dec 29 2022 - 13:26:04 CST)
- << thresholds for drawing bonds >> I. Camps (Wed Dec 21 2022 - 13:49:48 CST)
- (no subject) Ivan Franzoni (Tue Dec 20 2022 - 12:01:20 CST)
- Error in merging two PSFs and PDBs using a TCL script Sarthak Mohanty (Fri Dec 16 2022 - 11:59:06 CST)
- BFEE calculations for protein-protein complexes Deepshikha Ghosh 19310001 (Mon Dec 12 2022 - 04:23:41 CST)
- Issue install VMD 1.9.3 Spack Arsene Marian Alain (Mon Dec 05 2022 - 01:34:27 CST)
- Question about code Raag Saluja (Sun Dec 04 2022 - 13:43:40 CST)
- Generating single amino acid using PSFGEN Huang, Caleb (Fri Dec 02 2022 - 16:23:54 CST)
- Unknown variable modifier. while running vmd Diship Srivastava (Tue Nov 29 2022 - 23:33:40 CST)
- vmd-l@ks.uiuc.edu angad sharma (Tue Nov 22 2022 - 05:06:23 CST)
- Listing solvent accessible surface area per residue Bill McIntyre (Sat Nov 19 2022 - 13:55:14 CST)
- NewCartoon or NewRibbons Secondary Structure methods don't work with latest updated Mesa 22.2.3 David Carrasco de Busturia (Sat Nov 19 2022 - 05:48:51 CST)
- Residence time calculation angad sharma (Thu Nov 17 2022 - 23:21:43 CST)
- C atom projection calculation Kodituwakku,Dimuthu Nirmani (Wed Nov 16 2022 - 22:23:23 CST)
- Coloring/material of ply files Bart Bruininks (Tue Nov 15 2022 - 09:29:59 CST)
- Atomselect entire water molecule using pbwithin Huang, Caleb (Fri Nov 11 2022 - 14:51:53 CST)
- Hbonds details every frame Nick Bayhi (Thu Nov 10 2022 - 16:57:02 CST)
- Parametrization of sulfur-containing compound with ffTK Trollmann, Marius (Thu Nov 10 2022 - 10:36:32 CST)
- Residence time of ions angad sharma (Thu Nov 10 2022 - 00:32:40 CST)
- MacOS VMD1.9.4.a55 crashes- malloc: can't allocate region Subha Kalyaanamoorthy (Wed Nov 09 2022 - 11:36:29 CST)
- Topotools "guessangles" not assigning angles utku.ozkan_at_bilkent.edu.tr (Wed Nov 09 2022 - 00:05:50 CST)
- Error with PCA Calculation using Normal Mode Wizard Efthymiou, Christos (Tue Nov 08 2022 - 12:06:45 CST)
- Linux HiDPI screens FX (Mon Nov 07 2022 - 08:33:18 CST)
- can not visualize bond in vmd Chunli Yan (Fri Nov 04 2022 - 12:49:26 CDT)
- visualisation of molecular orbitals in VMD jing liang (Fri Nov 04 2022 - 06:37:41 CDT)
- Extracting hydrogen bond information of water Ata Madanchi (Thu Nov 03 2022 - 14:28:43 CDT)
- VMD 1.9.4.a53 crashes on windows 11 Atanu Acharya (Thu Nov 03 2022 - 11:01:49 CDT)
- Re: VMD 1.9.4.a53 crashes on windows 11 John Stone (Thu Nov 03 2022 - 13:44:56 CDT)
- 3d visualization VMD / NVIDIA / Linux Vlad Cojocaru (Wed Nov 02 2022 - 05:26:47 CDT)
- Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Tue Nov 01 2022 - 22:09:45 CDT)
- RE: Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Fri Nov 04 2022 - 18:52:47 CDT)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Sun Nov 06 2022 - 15:28:50 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Mon Nov 07 2022 - 22:49:33 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Daipayan Sarkar (Tue Nov 08 2022 - 01:19:15 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Tue Nov 08 2022 - 12:00:56 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Daipayan Sarkar (Tue Nov 08 2022 - 15:45:28 CST)
- RE: RE: Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Wed Nov 09 2022 - 18:05:03 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Wed Nov 09 2022 - 18:22:54 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Sun Nov 06 2022 - 15:28:50 CST)
- RE: Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Fri Nov 04 2022 - 18:52:47 CDT)
- Question about running script for hydrogen bonding analysis Daniel Adrion (Sat Oct 29 2022 - 09:04:33 CDT)
- Re: Obtaining a list of surface exposed residues Bill McIntyre (Fri Oct 28 2022 - 02:36:24 CDT)
- helix orientation angle CPMAS Chen (Thu Oct 27 2022 - 20:55:45 CDT)
- QMMM Update Mcguire, Kelly (Fri Oct 21 2022 - 11:41:42 CDT)
- QMMM Update Mcguire, Kelly (Fri Oct 21 2022 - 11:36:06 CDT)
- QMMM Update Mcguire, Kelly (Thu Oct 20 2022 - 20:29:15 CDT)
- Two Proteins Question Mcguire, Kelly (Wed Oct 19 2022 - 16:23:37 CDT)
- Use VMD to produce images and videos to sell Henrique Fernandes (Sun Oct 16 2022 - 10:02:52 CDT)
- Protein breaks after automatic psf builder Neeraj Dhandia (Fri Oct 14 2022 - 06:45:08 CDT)
- When should I use NTER and NNEU as a patch? Derman Ba艧t眉rk (Tue Oct 11 2022 - 23:38:26 CDT)
- Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 13:33:08 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Tue Oct 11 2022 - 14:05:57 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 14:15:52 CDT)
- Re: Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Tue Oct 11 2022 - 14:33:49 CDT)
- Re: Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 19:45:48 CDT)
- Re: Re: Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Wed Oct 12 2022 - 03:02:29 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 14:15:52 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Georcki Ropon (Thu Oct 13 2022 - 14:31:37 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Tue Oct 11 2022 - 14:05:57 CDT)
- How to get a file of trajectories and velocities in VMD? Eduardo Estevez (Mon Oct 10 2022 - 16:53:39 CDT)
- Losing atoms while solvating Rajat Chakraborty (Mon Oct 10 2022 - 13:06:00 CDT)
- QwikMD Error in VMD 1.9.4a53 on Windows 10 Computer Efthymiou, Christos (Mon Oct 10 2022 - 12:04:46 CDT)
- Mopac VMD McGuire, Kelly (Sun Oct 09 2022 - 15:13:35 CDT)
- Installing VMD store using tkconsole in VMD in Windows 10 Madhavan Narayanan (Sat Oct 08 2022 - 11:31:32 CDT)
- Query regarding WISP extension in VMD Sruthi Sudhakar (Thu Oct 06 2022 - 01:31:58 CDT)
- Extracting Voxel-based or STL from QuickSurf Representation Max Win (Wed Oct 05 2022 - 15:13:51 CDT)
- VMD disables audio? Strahs, Dr. Daniel Bernard (Wed Oct 05 2022 - 11:50:17 CDT)
- Maximum Stride Possible for Publishable Results Efthymiou, Christos (Mon Oct 03 2022 - 13:50:17 CDT)
- Re: Maximum Stride Possible for Publishable Results Ashar Malik (Mon Oct 03 2022 - 23:47:24 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Tue Oct 04 2022 - 12:43:17 CDT)
- Re: Maximum Stride Possible for Publishable Results Giacomo Fiorin (Tue Oct 04 2022 - 13:31:28 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Wed Oct 05 2022 - 13:30:00 CDT)
- Re: Maximum Stride Possible for Publishable Results Axel Kohlmeyer (Wed Oct 05 2022 - 14:42:34 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Fri Oct 07 2022 - 13:34:53 CDT)
- Re: Maximum Stride Possible for Publishable Results Axel Kohlmeyer (Fri Oct 07 2022 - 13:42:45 CDT)
- Re: Maximum Stride Possible for Publishable Results Giacomo Fiorin (Fri Oct 07 2022 - 16:19:31 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Tue Oct 04 2022 - 12:43:17 CDT)
- Re: Maximum Stride Possible for Publishable Results Ashar Malik (Mon Oct 03 2022 - 23:47:24 CDT)
- Overriding default bond heuristics Raman Preet Singh (Mon Oct 03 2022 - 12:50:36 CDT)
- Re: Label all atoms using script Raman Preet Singh (Sat Oct 01 2022 - 11:40:20 CDT)
- Label all atoms using script Raman Preet Singh (Sat Oct 01 2022 - 08:55:36 CDT)
- How to calculate number of water molecules close to a nanostructure Eduardo Estevez (Sat Oct 01 2022 - 06:52:56 CDT)
- VMD1.9.4a57 crashes when main console moved to second display Chan, Matthew (Thu Sep 29 2022 - 16:37:35 CDT)
- dealing with large pdb files Morteza Chehel Amirani (Tue Sep 27 2022 - 15:50:47 CDT)
- INITIALIZATION ERROR --> OSPRay not yet initialized - WIN64, version 1.9.4a53 Chris Taylor (Mon Sep 26 2022 - 18:31:01 CDT)
- Part of my molecule isn't rendering in New Cartoon Nick Bayhi (Fri Sep 23 2022 - 16:22:49 CDT)
- Period images not appearing Ackad, Edward (Fri Sep 23 2022 - 13:29:45 CDT)
- Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Fri Sep 23 2022 - 05:14:30 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 07:54:53 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 15:36:58 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Fri Sep 23 2022 - 21:19:26 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Vermaas, Josh (Sat Sep 24 2022 - 12:28:36 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Sat Sep 24 2022 - 17:20:27 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Sat Sep 24 2022 - 21:22:13 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Vermaas, Josh (Sun Sep 25 2022 - 13:29:05 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Sun Sep 25 2022 - 21:35:55 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Michael Robinson (Sun Sep 25 2022 - 23:58:49 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Vermaas, Josh (Mon Sep 26 2022 - 08:30:26 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Michael Robinson (Mon Sep 26 2022 - 08:53:11 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 15:36:58 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 07:54:53 CDT)
- Calculating time variation of potential. Pranjal Sur (Fri Sep 23 2022 - 04:47:39 CDT)
- tcl measure bond length script Ryan Woltz (Tue Sep 13 2022 - 17:25:08 CDT)
- Installation problem on MacOS Monterey Suman Chakrabarty (Sun Sep 11 2022 - 12:16:22 CDT)
- Multiple Programmer Positions to develop VMD and NAMD Tajkhorshid, Emad (Sun Sep 11 2022 - 10:15:14 CDT)
- Rendering structures with Hydrogen Bonds using Tachyon Saumyak Mukherjee (Fri Sep 09 2022 - 08:18:21 CDT)
- Most relevant VMD install Klimkowski, V (Tue Sep 06 2022 - 20:52:51 CDT)
- Re: Most relevant VMD install Giacomo Fiorin (Wed Sep 07 2022 - 07:55:56 CDT)
- Re: Most relevant VMD install Josh Vermaas (Wed Sep 07 2022 - 07:56:34 CDT)
- Re: Most relevant VMD install Gumbart, JC (Wed Sep 07 2022 - 10:13:18 CDT)
- QwikMD QM Tut - FATAL ERROR: Error running command for QM forces calculation hgkrug1_at_gmail.com (Tue Sep 06 2022 - 10:30:58 CDT)
- Using Molefacture plugin in batch mode Enrico Martinez (Tue Sep 06 2022 - 03:22:44 CDT)
- patching of sucrose Akash Mondal (Sat Sep 03 2022 - 01:14:51 CDT)
- Automation of Analysis from QwikMD and Loading Trajectory Without Water in QwikMD Efthymiou, Christos (Thu Sep 01 2022 - 08:48:31 CDT)
- Chains x, y, and z cannot be selected Charles McAnany (Wed Aug 31 2022 - 14:27:29 CDT)
- How to choose solid color in clipping plane render with POV-Ray Prateek Bansal (Tue Aug 30 2022 - 11:10:42 CDT)
- Add Topology and Parameters in QwikMD Efthymiou, Christos (Tue Aug 30 2022 - 10:09:37 CDT)
- Problem with measure bond command returning -NaN for some frames Norbert Straeter (Mon Aug 29 2022 - 07:32:17 CDT)
- Correlation matrix illustration via heating map Maghsoud, Yazdan (Sun Aug 28 2022 - 11:08:11 CDT)
- DisRG Plugin Availability Efthymiou, Christos (Thu Aug 25 2022 - 10:43:10 CDT)
- rdf with respect to a specific point michaelmorgan937_at_gmail.com (Wed Aug 24 2022 - 13:17:33 CDT)
- Mutation of Amino Acid Akash Mondal (Sat Aug 20 2022 - 01:11:34 CDT)
- CaFE VMD Plugin Errors at PB Calculation Step Efthymiou, Christos (Fri Aug 19 2022 - 04:03:25 CDT)
- Error in FFTK charges optimization (Run Optimization) Chenbo Yan (Thu Aug 18 2022 - 21:31:59 CDT)
- CaFE Plugin - Didn't Find vDW Parameter for Atom Type HT1 Error Efthymiou, Christos (Thu Aug 18 2022 - 11:11:35 CDT)
- Angle Cutoff variable for Hydrogen Bonds David Carrasco de Busturia (Thu Aug 18 2022 - 05:41:30 CDT)
- Protein residue read as solvent Arthur Pereira da Fonseca (Tue Aug 16 2022 - 18:49:52 CDT)
- Re: atomselect for interacting hydroxyl groups Vermaas, Josh (Tue Aug 16 2022 - 12:53:40 CDT)
- atomselect for interacting hydroxyl groups Huang, Caleb (Tue Aug 16 2022 - 11:36:40 CDT)
- problems with OSX 64-bit installation Charlie Mcdowell (Mon Aug 15 2022 - 23:05:09 CDT)
- OSPRay error on startup Windows11 Chris Taylor (Thu Aug 11 2022 - 17:26:42 CDT)
- Adding Topology+Parameter For Small Molecule in QwikMD Efthymiou, Christos (Tue Aug 09 2022 - 08:09:41 CDT)
- Hetero Chain not Recognized by Structure Manipulation Window Efthymiou, Christos (Mon Aug 08 2022 - 11:10:16 CDT)
- Preparing Simulation Files Quickly Using QwikMD Efthymiou, Christos (Fri Aug 05 2022 - 03:46:56 CDT)
- Multi-core CPU does not work with VMD. toshiaki.tomimori_at_uniadex.co.jp (Wed Aug 03 2022 - 06:10:01 CDT)
- Unable to Delete Macro QwikMD Error Efthymiou, Christos (Mon Aug 01 2022 - 03:55:53 CDT)
- compiling VMD 1.9.3 under Ubuntu 22.04LTS: modern C library issues Strahs, Dr. Daniel Bernard (Sat Jul 30 2022 - 14:04:38 CDT)
- Question about Network Analysis tutorial chanyann06_at_stu.scu.edu.cn (Fri Jul 29 2022 - 07:12:07 CDT)
- Color change in VMD Saikat Pal (Wed Jul 27 2022 - 10:33:12 CDT)
- Create CHARMM COR files with VMD Prathit Chatterjee (Tue Jul 26 2022 - 08:50:27 CDT)
- Color Coding by Residue Type Peter (Mon Jul 25 2022 - 15:28:58 CDT)
- << multiple atom selection >> I. Camps (Sat Jul 23 2022 - 11:13:55 CDT)
- Re: << multiple atom selection >> Ashar Malik (Sat Jul 23 2022 - 12:14:54 CDT)
- Re: << multiple atom selection >> Zachary SMITH (Sat Jul 23 2022 - 12:20:13 CDT)
- Re: << multiple atom selection >> Axel Kohlmeyer (Sat Jul 23 2022 - 13:02:47 CDT)
- Re: << multiple atom selection >> I. Camps (Sat Jul 23 2022 - 16:48:32 CDT)
- VMD 1.9.4a57 on Linux ? Thibault TUBIANA (Fri Jul 22 2022 - 09:08:56 CDT)
- NAMDEnergy Plugin in VMD Kartik Tulsian (Sat Jul 16 2022 - 05:11:00 CDT)
- Permanent position Research Software HPC Engineer at the University of Delaware Juan R. Perilla (Thu Jul 14 2022 - 09:19:01 CDT)
- Cannot write parm7 file with type parm7 Prathit Chatterjee (Thu Jul 14 2022 - 08:54:37 CDT)
- Cafe 1.0 plugin does not recognize commands DENILSON FERREIRA DE OLIVEIRA (Mon Jul 11 2022 - 09:07:19 CDT)
- PROBLEM INSTALLING VMD Edivaldo Rodrigues (Mon Jul 11 2022 - 06:53:09 CDT)
- (no subject) Edivaldo Rodrigues (Thu Jul 07 2022 - 16:12:53 CDT)
- (no subject) Huertas, Jan (Wed Jul 06 2022 - 12:04:35 CDT)
- Multiseq doesn't work on mac Carlos Guardia (Fri Jul 01 2022 - 17:38:05 CDT)
- Calculate Free Binding Energy of Protein-Protein Complex: CaFE Extension Efthymiou, Christos (Tue Jun 28 2022 - 14:26:49 CDT)
- MultiSeq QR structure factorization on the command line Christian Seitz (Tue Jun 28 2022 - 14:07:41 CDT)
- Re: Re: Visualisation of CG bonds Vermaas, Josh (Mon Jun 27 2022 - 07:52:11 CDT)
- Visualisation of CG bonds Raman Preet Singh (Sun Jun 26 2022 - 13:07:45 CDT)
- protein residue not being recognized as protein Ryan Woltz (Fri Jun 17 2022 - 17:12:28 CDT)
- Error with CaFE VMD Plugin Efthymiou, Christos (Thu Jun 16 2022 - 05:30:17 CDT)
- How to reduce the size of a .dcd file? Efthymiou, Christos (Thu Jun 16 2022 - 05:14:03 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Thu Jun 16 2022 - 07:01:13 CDT)
- Re: How to reduce the size of a .dcd file? Vermaas, Josh (Thu Jun 16 2022 - 07:57:50 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Fri Jun 17 2022 - 07:26:49 CDT)
- Re: How to reduce the size of a .dcd file? Axel Kohlmeyer (Fri Jun 17 2022 - 09:45:16 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Sun Jun 19 2022 - 08:15:37 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Sun Jun 19 2022 - 13:51:13 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Tue Jun 21 2022 - 04:35:02 CDT)
- Re: How to reduce the size of a .dcd file? Giacomo Fiorin (Tue Jun 21 2022 - 06:07:54 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Fri Aug 26 2022 - 14:04:03 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Mon Aug 29 2022 - 01:47:51 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Mon Aug 29 2022 - 03:55:39 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Mon Aug 29 2022 - 04:07:18 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Mon Aug 29 2022 - 04:29:13 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Mon Aug 29 2022 - 06:07:00 CDT)
- Re: How to reduce the size of a .dcd file? Raman Preet Singh (Thu Jun 16 2022 - 08:23:34 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Thu Jun 16 2022 - 07:01:13 CDT)
- water bridges Alexei Rossokhin (Wed Jun 15 2022 - 09:14:46 CDT)
- Different results in using GUI or script Timelime Leonardo Palmieri (Fri Jun 10 2022 - 11:15:34 CDT)
- simple script question michaelmorgan937_at_gmail.com (Fri Jun 10 2022 - 00:02:39 CDT)
- GPU-accelerated MSD calculation Max Win (Thu Jun 09 2022 - 12:20:20 CDT)
- Unable to useTachyon-Optix renderer when VMD is installed in Windows Subsystem for Linux (WSL) Vaidehi Doke (Wed Jun 08 2022 - 06:56:04 CDT)
- Script Modification to Print Phi and Psi Angles Oscar Bastidas (Mon Jun 06 2022 - 23:12:08 CDT)
- Clarification on RMSF Calculation Efthymiou, Christos (Mon May 30 2022 - 14:08:16 CDT)
- Movie Maker plugin parallel MPI rendering Chris Taylor (Sun May 29 2022 - 17:33:46 CDT)
- Re: Tcl Scripts Fails Unless Run in Tkconsole Alexander Adams (Thu May 26 2022 - 19:35:44 CDT)
- Tcl Scripts Fails Unless Run in Tkconsole Alexander Adams (Thu May 26 2022 - 17:50:41 CDT)
- QFilesize_limit_exceeded_(core_dumped)=94_with_VMD_on_?= Linux Dourna Jamshideasli (Thu May 26 2022 - 11:21:50 CDT)
- Why the restype color of Gly residue in protein is green (polar)? Daniel Marin (Tue May 24 2022 - 04:28:35 CDT)
- measure sasa and memory issue Ackad, Edward (Sun May 22 2022 - 10:54:55 CDT)
- Launching VMD Gui from WSL Centos compiled from source manuel mourato (Sat May 21 2022 - 07:58:43 CDT)
- Plot RMSD/RMSF/SASA Results from Multiple Trajectories on Same Plot Efthymiou, Christos (Thu May 19 2022 - 14:53:57 CDT)
- Calculate Free Energy of Protein-Protein Binding Efthymiou, Christos (Thu May 12 2022 - 13:55:43 CDT)
- FFTK Opt.Bonded error: unmatched open quote in list Zakaria Bouchouireb (Tue May 10 2022 - 03:14:24 CDT)
- Parsing exit code from TCL script to bash bypassing VMD GIUSEPPE LEONARDO LICARI (Mon May 09 2022 - 08:20:59 CDT)
- Non-functional RMSD Visualizer in 1.9.4a53, windows Jason Smith (Fri May 06 2022 - 14:37:56 CDT)
- remove atoms in a geometric shape using VMD Mohammed GOUNZARI (Fri May 06 2022 - 14:26:06 CDT)
- Using VMD from a Chrome Web Browser manuel mourato (Fri May 06 2022 - 06:23:59 CDT)
- FFTK Parameterization of Halogenated Molecule Bassam Haddad (Thu May 05 2022 - 11:24:24 CDT)
- Parallel rendering example from tutorial, "VMD parallel commands" Chris Taylor (Mon May 02 2022 - 21:49:45 CDT)
- Re: Parallel rendering example from tutorial, "VMD parallel commands" John Stone (Wed May 04 2022 - 15:11:39 CDT)
- Movie Maker plugin parallel MPI rendering Chris Taylor (Thu May 26 2022 - 21:23:39 CDT)
- Unable to reload a saved state in VMD 1.9.3 Debostuti Ghoshdastidar (Mon May 02 2022 - 07:17:12 CDT)
- question on increasing font size on VMD main menu Lei Qian (Sat Apr 30 2022 - 12:21:13 CDT)
- how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:12:18 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Tue Apr 26 2022 - 14:17:02 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:35:41 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:41:29 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Tue Apr 26 2022 - 15:41:32 CDT)
- Re: how to analyse a trajectory without loading it Geist, Norman (Tue Apr 26 2022 - 23:00:20 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Wed Apr 27 2022 - 11:38:26 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Wed Apr 27 2022 - 13:49:18 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:35:41 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Tue Apr 26 2022 - 14:17:02 CDT)
- Errors using 'replicateCrystal.tcl' tutorial script Linda Ravazzano (Tue Apr 26 2022 - 09:10:39 CDT)
- FFTK baOpt electronic effects Aleksei (Wed Apr 13 2022 - 22:28:14 CDT)
- FFTK baOpt electronic effects Daniel Fellner (Wed Apr 13 2022 - 12:33:04 CDT)
- sched_setaffinity error message when using srun to give VMD only a portion of the cores on a node [SOLVED] Neale, Christopher Andrew (Tue Apr 12 2022 - 10:52:15 CDT)
- VMD dumps core after OSPRay render completes Chris Taylor (Sun Apr 10 2022 - 15:46:02 CDT)
- ffTK can't use empty string as operand of "*" vmd194a53win64-SetupV7.exe Rahul Nikhar (Tue Apr 05 2022 - 18:46:47 CDT)
- error 1114 when loading plugins Eric Ledieu (Tue Apr 05 2022 - 12:07:49 CDT)
- VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) yjcoshc (Mon Apr 04 2022 - 10:06:35 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) John Stone (Mon Apr 04 2022 - 10:11:51 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) Josh Vermaas (Mon Apr 04 2022 - 11:15:30 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) yjcoshc (Mon Apr 04 2022 - 11:18:41 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) John Stone (Mon Apr 04 2022 - 11:30:35 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) Dominique Mias-Lucquin (Wed Apr 06 2022 - 07:58:22 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) Vermaas, Josh (Wed Apr 06 2022 - 08:04:56 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) John Stone (Wed Apr 06 2022 - 09:48:56 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) yjcoshc (Mon Apr 04 2022 - 11:18:41 CDT)
- VMD MPI error Lenz Fiedler (Mon Apr 04 2022 - 09:39:17 CDT)
- Re: VMD MPI error John Stone (Mon Apr 04 2022 - 10:04:05 CDT)
- Re: VMD MPI error Lenz Fiedler (Mon Apr 04 2022 - 10:45:52 CDT)
- Re: VMD MPI error John Stone (Mon Apr 04 2022 - 11:37:34 CDT)
- Re: VMD MPI error Lenz Fiedler (Tue Apr 05 2022 - 01:29:09 CDT)
- Re: VMD MPI error Lenz Fiedler (Wed Apr 06 2022 - 02:16:09 CDT)
- Re: VMD MPI error Axel Kohlmeyer (Wed Apr 06 2022 - 05:48:26 CDT)
- Re: VMD MPI error Lenz Fiedler (Thu Apr 07 2022 - 02:33:53 CDT)
- Re: VMD MPI error Giacomo Fiorin (Wed Apr 06 2022 - 06:56:04 CDT)
- Re: VMD MPI error Lenz Fiedler (Mon Apr 04 2022 - 10:45:52 CDT)
- Re: VMD MPI error John Stone (Mon Apr 04 2022 - 10:04:05 CDT)
- Unable to rename material Vasista (Mon Apr 04 2022 - 05:40:43 CDT)
- GPU-accelerated RDF Calculation Max Win (Thu Mar 31 2022 - 16:52:56 CDT)
- << memory issue? >> I. Camps (Wed Mar 30 2022 - 20:04:47 CDT)
- How to increase bond length maximum ? maxim todoru (Tue Mar 29 2022 - 06:00:37 CDT)
- FFTK Charge Optimization Target Data Daniel Fellner (Wed Mar 30 2022 - 02:13:08 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Thu Mar 31 2022 - 10:51:07 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Fri Apr 01 2022 - 02:52:01 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Sun Apr 03 2022 - 15:41:48 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Mon Apr 04 2022 - 02:04:40 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Wed Apr 06 2022 - 21:21:04 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Thu Apr 07 2022 - 03:12:01 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Fri Apr 01 2022 - 02:52:01 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Thu Mar 31 2022 - 10:51:07 CDT)
- Timeline/H-Bond broken OS X CHARLES MCCALLUM (Tue Mar 29 2022 - 19:03:08 CDT)
- Changing color scale bar location in VMD Ahmad Alqaisi (Fri Mar 25 2022 - 20:30:06 CDT)
- Issue in wat_hbond.tcl script Alvea Tasneem (Thu Mar 24 2022 - 12:47:24 CDT)
- Distances with respect to principal axis Peter Mawanga (Mon Mar 21 2022 - 09:30:57 CDT)
- How to read netcdf files on Windows version of VMD? Suchetana Gupta (Mon Mar 14 2022 - 00:08:49 CDT)
- Re: VMD 1.9.4 as a Python Module Vermaas, Josh (Thu Mar 10 2022 - 08:50:16 CST)
- VMD 1.9.4 as a Python Module Dominique Mias-Lucquin (Wed Mar 09 2022 - 05:15:39 CST)
- Problem w/ DCD Title Block When Saving - Using 'Animate Write' vs Saving Via GUI Adam Gross (Tue Mar 08 2022 - 11:39:05 CST)
- PSF Script Mcguire, Kelly (Sat Mar 05 2022 - 11:50:08 CST)
- Check DCD finish Georcki Ropon (Tue Mar 01 2022 - 11:06:02 CST)
- read setting from text file Marco Di Gennaro (TME) (Tue Mar 01 2022 - 07:59:38 CST)
- Water molecule ID in Hydrogen bond plugin SYEDA SABIHA SULTANA LUBNA . (Mon Feb 28 2022 - 03:38:01 CST)
- get coordinates for each frame in a trjectory Alessandro Ruda (Sun Feb 27 2022 - 08:03:44 CST)
- Re: command measure inertia Vermaas, Josh (Sat Feb 26 2022 - 11:57:31 CST)
- command measure inertia Alessandro Ruda (Sat Feb 26 2022 - 09:59:14 CST)
- MMPBSA Question Mcguire, Kelly (Mon Feb 21 2022 - 15:44:57 CST)
- RSCB assembly formatting change - chain names with hyphens and numbers not recognized in VMD Evelyn Maizels (Thu Feb 17 2022 - 19:17:06 CST)
- VMD Visualizers and AutoPSF unusable on Mac BigSur and VMD1.9.4a55 Paula Schneider (Thu Feb 17 2022 - 14:27:31 CST)
- Molecular orbitals from molden files florian.naegele_at_uni-ulm.de (Thu Feb 17 2022 - 03:39:37 CST)
- VMD Install Samuel Canner (Mon Feb 14 2022 - 16:44:00 CST)
- Questions - Running vmd on a supercomputer emerson p l (Mon Feb 14 2022 - 08:01:02 CST)
- hmassrepart Artur Hermano (Thu Feb 10 2022 - 16:05:12 CST)
- tkcon behavior in OS X / selection Q Mike McCallum (Tue Feb 08 2022 - 11:57:59 CST)
- Re: tkcon behavior in OS X / selection Q Giacomo Fiorin (Tue Feb 08 2022 - 13:11:58 CST)
- Re: tkcon behavior in OS X / selection Q Mike McCallum (Tue Feb 08 2022 - 13:18:54 CST)
- Re: tkcon behavior in OS X / selection Q Giacomo Fiorin (Tue Feb 08 2022 - 13:45:56 CST)
- Re: tkcon behavior in OS X / selection Q John Stone (Tue Feb 08 2022 - 14:09:13 CST)
- Re: tkcon behavior in OS X / selection Q Cesar Millan (Tue Feb 08 2022 - 14:10:54 CST)
- Re: tkcon behavior in OS X / selection Q John Stone (Tue Feb 08 2022 - 14:17:35 CST)
- Re: tkcon behavior in OS X / selection Q Gumbart, JC (Tue Feb 08 2022 - 17:32:58 CST)
- Re: tkcon behavior in OS X / selection Q Mike McCallum (Tue Feb 08 2022 - 13:18:54 CST)
- Re: tkcon behavior in OS X / selection Q Giacomo Fiorin (Tue Feb 08 2022 - 13:11:58 CST)
- Puzzle with "small molecule" ligand structure in nucleotide environments Francesco Pietra (Sun Feb 06 2022 - 01:59:52 CST)
- autopsf question McGuire, Kelly (Sat Feb 05 2022 - 16:33:09 CST)
- PDBx and chain IDs in VMD 1.9.4a55 Whitford, Paul (Fri Feb 04 2022 - 10:28:32 CST)
- Any TCL script to identify specific MD water molecules with their respective IDs, forming hbond with certain residues in every frame Alvea Tasneem (Wed Feb 02 2022 - 11:48:23 CST)
- Regarding Periodic MSM calculation Subhasish Mallick (Wed Feb 02 2022 - 02:08:16 CST)
- Issue running vmd and tk commands on my computer through script Huebert, David Nicolas (Wed Feb 02 2022 - 00:19:31 CST)
- Protein-ligand interactions Maryam (Mon Jan 31 2022 - 10:39:44 CST)
- Needing to visualize lots of spheres during solution steps Ali Sheikholeslam (Tue Jan 25 2022 - 13:34:14 CST)
- pbc wrap issue Aditi Gotkhindikar (Sun Jan 23 2022 - 23:55:55 CST)
- Error in tcl script Kiana Jahani (Sun Jan 23 2022 - 05:13:46 CST)
- PDBx/CIF Problem on New PDBs Andrew White (Thu Jan 20 2022 - 10:38:44 CST)
- Problems with charmm36 modified nucleotides for psfgen and namd Francesco Pietra (Thu Jan 20 2022 - 08:26:48 CST)
- Visualize a lammpstrij file Otakandza Glenn (Thu Jan 20 2022 - 05:52:50 CST)
- Where to find top_all36_cgenff.rtf/prm version 4.5? Francesco Pietra (Wed Jan 19 2022 - 08:39:20 CST)
- Issue with Timeline Plugin related to "geometry manager pack" Aaron Blanchard, Ph.D. (Mon Jan 17 2022 - 23:23:51 CST)
- MOLECULE DESTROYED BY FATAL ERROR Eduardo Estevez (Sun Jan 16 2022 - 14:54:00 CST)
- Place multiple proteins into membrane Georcki Ropon (Tue Jan 11 2022 - 14:31:08 CST)
- Problem selecting atoms MacOS VMD 1.9.4a55 for MacOS X, 64-bit Intel x86 (x86_64) Sergio Perez (Tue Jan 11 2022 - 10:21:12 CST)
- QMMM simulation orbitals visualization step by step francisca andrea salas sepulveda (Tue Jan 11 2022 - 08:17:20 CST)
- "Error: no indices found in file." in carma.indices using NetworkView Nick Bayhi (Fri Jan 07 2022 - 14:19:55 CST)
- Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 03:12:44 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 07:55:42 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 08:45:26 CST)
- Fwd: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 09:01:58 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 12:12:50 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 14:28:13 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 15:27:37 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 09:44:32 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 08:45:26 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 07:55:42 CST)
- mail about VMD installation vidhya sankar (Fri Dec 31 2021 - 08:29:44 CST)
- issue with protein- ligand psfgen Aditi Gotkhindikar (Mon Dec 27 2021 - 05:39:04 CST)
- Question about error while using QwikMD files Ahmad Alqaisi (Fri Dec 24 2021 - 15:25:30 CST)
- Vmd on Monterey Osman, Roman (Thu Dec 23 2021 - 22:31:03 CST)
- How to write a netcdf file in vmd from already loaded netcdf/dcd trajectory Prathit Chatterjee (Thu Dec 23 2021 - 05:00:44 CST)
- Too many nested evaluations Hamish Swanson (Mon Dec 20 2021 - 03:58:35 CST)
- Problem with rendering proper colors in linux Soumik Ghosh (Fri Dec 17 2021 - 08:21:25 CST)
- VMD license Arthur Pereira da Fonseca (Thu Dec 16 2021 - 08:37:57 CST)
- VMD warning: ignoring out of range atom #*** with id *** Jiabin You (Wed Dec 15 2021 - 08:37:17 CST)
- Open VMD in current terminal directory Pacci Evaristo, Felipe Fabricio (Tue Dec 14 2021 - 16:57:13 CST)
- Avoid atom indices reassignment Liel Sapir (Mon Dec 13 2021 - 08:46:42 CST)
- Paper request : Assembly and Analysis of Cell-Scale Membrane Envelopes Georcki Ropon (Mon Dec 06 2021 - 15:40:55 CST)
- Distance from surface Raman Preet Singh (Mon Dec 06 2021 - 12:07:40 CST)
- color by molecule number Marco Di Gennaro (TME) (Mon Dec 06 2021 - 04:50:41 CST)
- Re: L-DOPA and non-natural amino acids incorporation Hideyuki Miyatake (Mon Dec 06 2021 - 04:30:50 CST)
- Fatal error: Unable to find dihedral parameters Kiana Jahani (Sun Dec 05 2021 - 06:26:46 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Sun Dec 05 2021 - 10:14:11 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Mon Dec 06 2021 - 02:19:29 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Mon Dec 06 2021 - 07:57:07 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Tue Dec 07 2021 - 05:30:01 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Tue Dec 07 2021 - 08:06:11 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Wed Dec 08 2021 - 00:32:49 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Wed Dec 08 2021 - 07:30:05 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Thu Dec 09 2021 - 02:37:41 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Mon Dec 06 2021 - 02:19:29 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Sun Dec 05 2021 - 10:14:11 CST)
- L-DOPA and non-natural amino acids incorporation Hideyuki Miyatake (Sat Dec 04 2021 - 06:00:11 CST)
- FFTK segmentation fault when guessing charge groups Bassam Haddad (Fri Dec 03 2021 - 02:35:30 CST)
- NYT article on SARS-CoV-2 aerosol+virion simulations w/ NAMD+VMD John Stone (Wed Dec 01 2021 - 13:11:51 CST)
- molfile plugin compilation for webassembly Kochnev, Iurii K (Wed Dec 01 2021 - 12:49:27 CST)
- Error 1327.Invalid Drive: F youtux (Tue Nov 30 2021 - 08:54:36 CST)
- Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Tue Nov 30 2021 - 07:45:40 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Phillip Compeau (Tue Nov 30 2021 - 10:27:03 CST)
- How can I incorporate non-natural amino acids into proteins? Hideyuki Miyatake (Tue Nov 30 2021 - 20:15:05 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Wed Dec 01 2021 - 00:49:28 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Wed Dec 01 2021 - 03:23:47 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Wed Dec 01 2021 - 23:35:30 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Thu Dec 02 2021 - 03:49:17 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Raman Preet Singh (Thu Dec 02 2021 - 07:27:27 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 11:13:07 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 11:19:23 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Thu Dec 02 2021 - 13:05:28 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 13:50:06 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Thu Dec 02 2021 - 13:55:59 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 14:39:05 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Wed Dec 01 2021 - 03:23:47 CST)
- Dynamic bonds across PBC MD Simulation (Sat Nov 27 2021 - 07:01:37 CST)
- Issue with STAMP Alignment Phillip Compeau (Fri Nov 26 2021 - 22:05:02 CST)
- basic procedure for ABF-PMF calculation Yogesh Sharma (Fri Nov 26 2021 - 11:53:01 CST)
- Absolute ruler or position limits of the current view Philip Loche (Thu Nov 25 2021 - 07:50:20 CST)
- CNT structure formation Kibria Imtiaz Shabbir (Thu Nov 25 2021 - 03:52:13 CST)
- VMD 1.9.4 (RTRT) with python3 and numpy on Ubuntu Bruininks, B.M.H. (Thu Nov 25 2021 - 03:25:12 CST)
- VMD GUI Francesco Pietra (Thu Nov 25 2021 - 02:15:38 CST)
- support for gromacs topology files Bennion, Brian (Wed Nov 24 2021 - 14:20:11 CST)
- Select a molecule with multiple indexes Otakandza Glenn (Mon Nov 22 2021 - 09:17:27 CST)
- Autoionize with non water solvent Francesco Pietra (Sat Nov 20 2021 - 09:11:49 CST)
- namd minimization looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 02:27:31 CST)
- Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 04:02:10 CST)
- Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Thu Nov 18 2021 - 08:03:40 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Fri Nov 19 2021 - 03:32:39 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Fri Nov 19 2021 - 07:56:58 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Fri Nov 19 2021 - 10:55:59 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Fri Nov 19 2021 - 11:02:59 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Fri Nov 19 2021 - 15:15:00 CST)
- Fwd: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Sat Nov 20 2021 - 08:57:32 CST)
- Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Thu Nov 18 2021 - 08:03:40 CST)
- Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 04:02:10 CST)
- autopsfgen looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 02:21:33 CST)
- Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 19:04:32 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:14:48 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:18:09 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:19:32 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:22:44 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:52:39 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:57:10 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:18:09 CST)
- Re: Change Atom serial Atom Vermaas, Josh (Wed Nov 17 2021 - 20:34:02 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:14:48 CST)
- chloroform box ChARMM Francesco Pietra (Wed Nov 17 2021 - 04:41:24 CST)
- AWS for VMD and NAMD no longer working? Chapman, John O. (Wed Nov 10 2021 - 16:25:23 CST)
- (Semi-)transparent windows on installation on a virtual server Per Larsson (Tue Nov 09 2021 - 14:33:47 CST)
- Cluster analysis SYEDA SABIHA SULTANA LUBNA . (Mon Nov 08 2021 - 04:49:50 CST)
- Angle between molecular dipole and nanotube axis. Yogesh Sharma (Mon Nov 08 2021 - 03:19:45 CST)
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- Install of VMD on amazon linux2 NICE DCV server Ben Cossins (Sat Nov 06 2021 - 10:56:34 CDT)
- Color Transition in VMD maxim todoru (Sat Nov 06 2021 - 09:46:26 CDT)
- Re: Color Transition in VMD Giacomo Fiorin (Sat Nov 06 2021 - 10:30:33 CDT)
- Re: Color Transition in VMD maxim todoru (Sat Nov 06 2021 - 11:49:34 CDT)
- Re: Color Transition in VMD Vermaas, Josh (Sat Nov 06 2021 - 13:22:11 CDT)
- Re: Color Transition in VMD John Stone (Tue Nov 09 2021 - 15:59:52 CST)
- Re: Color Transition in VMD maxim todoru (Fri Nov 12 2021 - 15:23:26 CST)
- Re: Color Transition in VMD maxim todoru (Sat Nov 13 2021 - 15:09:15 CST)
- Re: Color Transition in VMD Axel Kohlmeyer (Sat Nov 13 2021 - 16:32:52 CST)
- Re: Color Transition in VMD Axel Kohlmeyer (Sat Nov 13 2021 - 18:42:24 CST)
- Re: Color Transition in VMD Axel Kohlmeyer (Sun Nov 14 2021 - 02:44:41 CST)
- Re: Color Transition in VMD maxim todoru (Fri Nov 12 2021 - 22:20:18 CST)
- Re: Color Transition in VMD maxim todoru (Sat Nov 06 2021 - 11:49:34 CDT)
- Re: Color Transition in VMD Giacomo Fiorin (Sat Nov 06 2021 - 10:30:33 CDT)
- Error reading fep.tcl file in namd SYEDA SABIHA SULTANA LUBNA . (Fri Oct 29 2021 - 06:52:39 CDT)
- Re: namd-l: RMSD and RMSF of ligand Only Mi Yang (Thu Oct 28 2021 - 08:35:40 CDT)
- How to create a color ramp in VMD? anas forum (Wed Oct 27 2021 - 06:55:37 CDT)
- RMSD and RMSF of ligand Only Mi Yang (Thu Oct 28 2021 - 04:48:37 CDT)
- energy partitioning Alexei Rossokhin (Tue Oct 26 2021 - 06:19:49 CDT)
- protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 15:05:58 CDT)
- Re: protein and lipid jumping Ashar Malik (Fri Oct 22 2021 - 21:34:47 CDT)
- Re: protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 21:57:27 CDT)
- Re: protein and lipid jumping Ashar Malik (Fri Oct 22 2021 - 22:15:11 CDT)
- Re: protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 23:34:08 CDT)
- Re: protein and lipid jumping Ashar Malik (Sat Oct 23 2021 - 00:42:39 CDT)
- Re: protein and lipid jumping Ryan Woltz (Sat Oct 23 2021 - 01:01:48 CDT)
- Re: protein and lipid jumping Ashar Malik (Sat Oct 23 2021 - 01:17:03 CDT)
- Re: protein and lipid jumping Ebru 脟etin (Sat Oct 23 2021 - 03:51:17 CDT)
- Re: protein and lipid jumping Raman Preet Singh (Sat Oct 23 2021 - 08:36:59 CDT)
- Re: protein and lipid jumping Ryan Woltz (Sun Oct 24 2021 - 13:47:18 CDT)
- Re: protein and lipid jumping Gumbart, JC (Sun Oct 24 2021 - 23:26:45 CDT)
- Re: protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 21:57:27 CDT)
- Re: protein and lipid jumping Ashar Malik (Fri Oct 22 2021 - 21:34:47 CDT)
- Script for contact Vs Freq Mi Yang (Thu Oct 21 2021 - 12:41:06 CDT)
- Fwd: Fwd: namd-l: impropers for protonated 1-methyladenosine Francesco Pietra (Wed Oct 20 2021 - 08:40:14 CDT)
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- Coloring rings with paperchain Xiang Gao (Mon Oct 18 2021 - 16:47:56 CDT)
- VMD Movie Plugin for MacOS Mahsa (Sat Oct 16 2021 - 13:27:50 CDT)
- mac OS Bigsur version 11.6 intel netcdf extension Sunidhi Lenka (Fri Oct 15 2021 - 13:47:32 CDT)
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- CAFE plugin Jos茅 Villala铆n (Wed Oct 13 2021 - 06:27:18 CDT)
- Re: vmd-l digest V1 #4449 tatyanasysoeva_at_gmail.com (Tue Oct 12 2021 - 19:48:30 CDT)
- Generating silanol group on silica Javier Ivan Wong Romero (Tue Oct 12 2021 - 18:40:44 CDT)
- Change Tkconsole brackground Georcki Ropon (Sun Oct 10 2021 - 14:19:12 CDT)
- partially loading all dcd files using animatedcds X_ChangeProperty: BadValue Ryan Woltz (Sun Oct 10 2021 - 10:27:00 CDT)
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- save the secondary structure and rmsd Runak R (Fri Oct 08 2021 - 10:18:17 CDT)
- Density profile of MICELLE . sheikh sameer (Fri Oct 08 2021 - 09:55:58 CDT)
- Problem running CAFE for MMPBSA using CHARMM PB Radius Javier Ivan Wong Romero (Thu Oct 07 2021 - 20:38:11 CDT)
- Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Tue Oct 05 2021 - 22:10:14 CDT)
- Re: Merge frames of PDB asymmetric unit to biological assembly Axel Kohlmeyer (Tue Oct 05 2021 - 23:42:45 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Wed Oct 06 2021 - 21:02:58 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Tue Oct 12 2021 - 21:46:24 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Thu Oct 14 2021 - 14:21:39 CDT)
- Re: Merge frames of PDB asymmetric unit to biological assembly John Stone (Mon Oct 18 2021 - 11:55:03 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Wed Oct 06 2021 - 21:02:58 CDT)
- Angle parameters Hideyuki Miyatake (Sat Dec 11 2021 - 22:59:50 CST)
- Re: Merge frames of PDB asymmetric unit to biological assembly Axel Kohlmeyer (Tue Oct 05 2021 - 23:42:45 CDT)
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- Re: time dependent plot for stride output file Santanu Santra (Tue Sep 28 2021 - 00:37:42 CDT)
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- Re: Regarding atom index in VMD Vermaas, Josh (Mon Sep 13 2021 - 15:19:31 CDT)
- Regarding atom index in VMD Arpita Srivastava (Mon Sep 13 2021 - 14:20:59 CDT)
- Question about secondary structure analysis Runak R (Mon Sep 13 2021 - 11:36:43 CDT)
- FFTK - ORCA Bassam Haddad (Mon Sep 13 2021 - 04:41:40 CDT)
- autopsf with many modifiers Francesco Pietra (Sat Sep 11 2021 - 09:21:24 CDT)
- Fwd: autopsf with many modifiers Francesco Pietra (Mon Sep 13 2021 - 04:58:30 CDT)
- Fwd: autopsf with many modifiers Francesco Pietra (Mon Sep 13 2021 - 09:25:31 CDT)
- Re: Fwd: autopsf with many modifiers Peter Freddolino (Mon Sep 13 2021 - 12:00:20 CDT)
- Re: Fwd: autopsf with many modifiers Francesco Pietra (Mon Sep 13 2021 - 12:45:15 CDT)
- Fwd: Fwd: autopsf with many modifiers Francesco Pietra (Tue Sep 14 2021 - 03:04:07 CDT)
- Fwd: Fwd: autopsf with many modifiers Francesco Pietra (Tue Sep 14 2021 - 04:30:38 CDT)
- Re: Fwd: autopsf with many modifiers Peter Freddolino (Sun Sep 19 2021 - 00:11:26 CDT)
- Fwd: autopsf with many modifiers Francesco Pietra (Mon Sep 13 2021 - 09:25:31 CDT)
- Fwd: autopsf with many modifiers Francesco Pietra (Mon Sep 13 2021 - 04:58:30 CDT)
- Issues with multiseq Raul Araya (Fri Sep 10 2021 - 14:16:46 CDT)
- Re: VMD installation on Mac OSx 11 Bug Sur Mauro Boero (Wed Sep 08 2021 - 06:44:35 CDT)
- VMD installation on Mac OSx 11 Bug Sur Mauro Boero (Mon Sep 06 2021 - 02:08:46 CDT)
- Re: Umbrella sampling windows Vermaas, Josh (Sat Sep 04 2021 - 16:10:37 CDT)
- Umbrella sampling windows Ropon-Palacios G. (Sat Sep 04 2021 - 13:19:49 CDT)
- loading movies of ply files Prof. Eddie (Thu Sep 02 2021 - 10:35:03 CDT)
- Tachyon not rendering large scenes Jason Hlozek (Thu Sep 02 2021 - 07:29:11 CDT)
- Re: Tachyon not rendering large scenes John Stone (Thu Sep 02 2021 - 08:43:49 CDT)
- Re: Tachyon not rendering large scenes Jason Hlozek (Thu Sep 02 2021 - 10:33:43 CDT)
- Re: Tachyon not rendering large scenes Axel Kohlmeyer (Thu Sep 02 2021 - 11:06:30 CDT)
- Re: Tachyon not rendering large scenes John Stone (Thu Sep 02 2021 - 11:33:56 CDT)
- Re: Tachyon not rendering large scenes Jason Hlozek (Thu Sep 02 2021 - 16:41:14 CDT)
- Re: Tachyon not rendering large scenes Carlos Simmerling (Fri Sep 03 2021 - 05:53:07 CDT)
- Re: Tachyon not rendering large scenes John Stone (Fri Sep 17 2021 - 23:54:40 CDT)
- Re: Tachyon not rendering large scenes Jason Hlozek (Mon Sep 20 2021 - 06:19:57 CDT)
- Re: Tachyon not rendering large scenes Jason Smith (Thu Sep 02 2021 - 12:18:42 CDT)
- Re: Tachyon not rendering large scenes Jason Hlozek (Thu Sep 02 2021 - 10:33:43 CDT)
- Re: Tachyon not rendering large scenes John Stone (Thu Sep 02 2021 - 08:43:49 CDT)
- Visualizing segmentation/labeling without python dependency Bruininks, B.M.H. (Wed Sep 01 2021 - 08:35:14 CDT)
- Re: Visualizing segmentation/labeling without python dependency Vermaas, Josh (Wed Sep 01 2021 - 10:51:53 CDT)
- Re: Visualizing segmentation/labeling without python dependency Bruininks, B.M.H. (Thu Sep 02 2021 - 04:15:40 CDT)
- Re: Visualizing segmentation/labeling without python dependency Vermaas, Josh (Thu Sep 02 2021 - 07:46:55 CDT)
- Re: Visualizing segmentation/labeling without python dependency Bruininks, B.M.H. (Thu Sep 02 2021 - 08:06:55 CDT)
- Re: Visualizing segmentation/labeling without python dependency Josh Vermaas (Thu Sep 02 2021 - 09:12:24 CDT)
- Re: Visualizing segmentation/labeling without python dependency John Stone (Thu Sep 02 2021 - 09:27:42 CDT)
- Re: Visualizing segmentation/labeling without python dependency Bruininks, B.M.H. (Thu Sep 02 2021 - 04:15:40 CDT)
- Re: Visualizing segmentation/labeling without python dependency Vermaas, Josh (Wed Sep 01 2021 - 10:51:53 CDT)
- Phosphate ions Raman Preet Singh (Sat Aug 28 2021 - 08:43:43 CDT)
- VMD not displaying Gromacs TRR format traj Prithwish Nandi (Thu Aug 26 2021 - 11:36:12 CDT)
- FFTK dihedral scan discontinuities Daniel Fellner (Thu Aug 26 2021 - 10:18:17 CDT)
- VMD Error: vecsub: two vectors don't have the same size Amir Zeb (Thu Aug 26 2021 - 02:03:51 CDT)
- VR movie Amnah Alalmaie (Wed Aug 25 2021 - 21:18:01 CDT)
- Changing Tk console background Manasa Yadavalli (Wed Aug 25 2021 - 15:46:57 CDT)
- Tk console not responding to keystrokes Manasa Yadavalli (Wed Aug 25 2021 - 15:46:18 CDT)
- Asymmetric concentration gradient Ropon-Palacios G. (Mon Aug 23 2021 - 21:08:19 CDT)
- VMD Tachyon Render fails with new material Prateek Bansal (Mon Aug 23 2021 - 10:21:48 CDT)
- Hexameric periodic box Georcki Ropon (Fri Aug 20 2021 - 17:36:43 CDT)
- high-dpi monitor issue Raul Araya (Fri Aug 20 2021 - 15:19:42 CDT)
- Mutated model development in VMD SYEDA SABIHA SULTANA LUBNA . (Thu Aug 19 2021 - 06:34:02 CDT)
- Glycosphingolipids structure Ropon-Palacios G. (Tue Aug 17 2021 - 15:42:38 CDT)
- Understanding the positional difference of all atoms between two frames SYEDA SABIHA SULTANA LUBNA . (Tue Aug 17 2021 - 03:02:23 CDT)
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- FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CD2R6A LPA1 zeynab hosseini (Fri Aug 13 2021 - 03:28:24 CDT)
- Re: Stripping water from psf Vermaas, Josh (Thu Aug 12 2021 - 14:55:03 CDT)
- Stripping water from psf Raman Preet Singh (Thu Aug 12 2021 - 12:44:46 CDT)
- Add specific h-bonds Dawid das (Thu Aug 12 2021 - 08:59:35 CDT)
- Joining nonlinear chain fragments from LAMMPS data file Clement Fang Jin Koh (Wed Aug 11 2021 - 12:32:56 CDT)
- Re: Protein Alignment Question Vermaas, Josh (Wed Aug 11 2021 - 09:10:49 CDT)
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- Flying metal ion in QWIKMD ( NAMD/ORCA) QM/MM Herald Delis (Sat Aug 07 2021 - 14:01:27 CDT)
- Hydrogen mass repartition PSFGen2.0 Ropon-Palacios G. (Fri Aug 06 2021 - 13:52:10 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ren茅 Hafner TUK (Sat Aug 07 2021 - 04:20:23 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Georcki Ropon (Sat Aug 07 2021 - 11:55:41 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Geist, Norman (Sat Aug 07 2021 - 13:43:23 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ropon-Palacios G. (Sat Aug 07 2021 - 13:52:04 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Geist, Norman (Sat Aug 07 2021 - 15:19:47 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ropon-Palacios G. (Sat Aug 07 2021 - 15:20:53 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ren茅 Hafner TUK (Sat Aug 07 2021 - 14:14:49 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ropon-Palacios G. (Sat Aug 07 2021 - 14:57:32 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ren茅 Hafner TUK (Sat Aug 07 2021 - 15:21:21 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Gumbart, JC (Sat Aug 07 2021 - 17:32:23 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ropon-Palacios G. (Sat Aug 07 2021 - 18:20:43 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Geist, Norman (Sat Aug 07 2021 - 15:17:34 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ren茅 Hafner TUK (Sat Aug 07 2021 - 18:53:39 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ropon-Palacios G. (Sat Aug 07 2021 - 19:35:14 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Gumbart, JC (Sun Aug 08 2021 - 07:40:49 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 Ren茅 Hafner TUK (Sat Aug 07 2021 - 04:20:23 CDT)
- how to solvate the membrane in vmd?? Amir Zeb (Thu Aug 05 2021 - 07:55:38 CDT)
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- Re: psfgen 2.0 and Drude Gumbart, JC (Tue Aug 03 2021 - 14:44:09 CDT)
- psfgen 2.0 and Drude Gumbart, JC (Tue Aug 03 2021 - 14:22:37 CDT)
- Shannon entropy in MultiSeq? Aaron Oakley (Tue Aug 03 2021 - 00:11:26 CDT)
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- Problem with Psfgen 2.0 to create Drude FF .psf file for amino acid zeynab hosseini (Thu Jul 29 2021 - 11:57:11 CDT)
- Does CHARMM-GUI Drude-Prepper input generator work for MD simulation of carbon nanotubes? zeynab hosseini (Mon Jul 26 2021 - 14:08:52 CDT)
- Could not read file problem Igor Gordiy (Fri Jul 23 2021 - 04:33:46 CDT)
- FFTk GUI unresponsive Hamish Swanson (Thu Jul 22 2021 - 09:30:58 CDT)
- Discrepancy in value of dihedral angles of a sugar molecule by VMD tools chiessi_at_uniroma2.it (Thu Jul 22 2021 - 05:55:17 CDT)
- Re: Discrepancy in value of dihedral angles of a sugar molecule by VMD tools Axel Kohlmeyer (Thu Jul 22 2021 - 07:41:39 CDT)
- Re: Discrepancy in value of dihedral angles of a sugar molecule by VMD tools Josh Vermaas (Thu Jul 22 2021 - 08:44:49 CDT)
- RE: Discrepancy in value of dihedral angles of a sugar molecule by VMD tools Joaquim Rui de Castro Rodrigues (Thu Jul 22 2021 - 09:56:53 CDT)
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- RE:MolID error using fftk with VMD 1.94a49 on windows 10 - [Solved] ABEL Stephane (Sun Jul 18 2021 - 09:25:50 CDT)
- Re: [External] Re: troubles in setting pbc on m1 mac version Fujie Tang (Thu Jul 15 2021 - 08:53:54 CDT)
- Adding oxygen molecules Kiana Jahani (Thu Jul 15 2021 - 04:12:50 CDT)
- troubles in setting pbc on m1 mac version Fujie Tang (Wed Jul 14 2021 - 12:01:27 CDT)
- loading PDBs with multiple states having different numbers of atoms in VMD Stefan Ivanov (Wed Jul 14 2021 - 02:00:24 CDT)
- Re: Unwrap for diffusion phenomena? Vermaas, Josh (Tue Jul 13 2021 - 15:49:35 CDT)
- Unwrap for diffusion phenomena? Ropon-Palacios G. (Tue Jul 13 2021 - 14:01:04 CDT)
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- TR : MolID error using fftk with VMD 1.94a49 on windows 10 ABEL Stephane (Tue Jul 13 2021 - 08:51:45 CDT)
- Re: MolID error using fftk with VMD 1.94a49 on windows 10 Jason Smith (Tue Jul 13 2021 - 10:56:36 CDT)
- RE:MolID error using fftk with VMD 1.94a49 on windows 10 ABEL Stephane (Tue Jul 13 2021 - 12:35:20 CDT)
- Re: RE:MolID error using fftk with VMD 1.94a49 on windows 10 Gumbart, JC (Tue Jul 13 2021 - 19:26:15 CDT)
- Re: RE:MolID error using fftk with VMD 1.94a49 on windows 10 Gumbart, JC (Fri Jul 16 2021 - 16:29:41 CDT)
- Re: RE:MolID error using fftk with VMD 1.94a49 on windows 10 John Stone (Mon Jul 19 2021 - 11:28:51 CDT)
- RE:MolID error using fftk with VMD 1.94a49 on windows 10 ABEL Stephane (Tue Jul 13 2021 - 12:35:20 CDT)
- Re: MolID error using fftk with VMD 1.94a49 on windows 10 Jason Smith (Tue Jul 13 2021 - 10:56:36 CDT)
- showing bonds in .xyz files Yiyan Kuang (Tue Jul 06 2021 - 22:13:38 CDT)
- Molecular Design Interface Software Development Position Joao Vieira-Ribeiro (Tue Jul 06 2021 - 15:00:34 CDT)
- Randomly select molecules and delete them fan li (Tue Jul 06 2021 - 05:23:48 CDT)
- Autopsf error Amir Zeb (Mon Jul 05 2021 - 21:48:42 CDT)
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- Residue numbers changing after addition of simulation boxes below and above membrane cell Nagendra Prasad (Sun Jun 20 2021 - 05:10:31 CDT)
- Measure helicity at each frame Roni Saiba (Fri Jun 18 2021 - 21:09:24 CDT)
- [topotools]writelammpsdata 鍐壓婕 (Fri Jun 18 2021 - 07:04:46 CDT)
- Unable to open VMD on Mac Anirudh Nandakumar (Wed Jun 16 2021 - 08:34:31 CDT)
- topotools lammps style sphere - write molecules MD Simulation (Mon Jun 14 2021 - 10:05:35 CDT)
- Jarzynski analysis Ropon-Palacios G. (Sun Jun 13 2021 - 22:26:03 CDT)
- Wrapping creates extra bonds..! zeynab hosseini (Sun Jun 13 2021 - 15:06:41 CDT)
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- Building micelles Raman Preet Singh (Sun Jun 13 2021 - 13:29:34 CDT)
- Found bad contact Ropon-Palacios G. (Thu Jun 10 2021 - 10:19:13 CDT)
- loading multiple different topologies into the same "molecule" Chris Neale (Wed Jun 09 2021 - 18:34:22 CDT)
- Re: loading multiple different topologies into the same "molecule" Pawel Kedzierski (Thu Jun 10 2021 - 02:00:01 CDT)
- Re: loading multiple different topologies into the same "molecule" Vermaas, Josh (Thu Jun 10 2021 - 09:19:11 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 12:26:39 CDT)
- Re: loading multiple different topologies into the same "molecule" Axel Kohlmeyer (Thu Jun 10 2021 - 13:26:26 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 13:51:13 CDT)
- Re: loading multiple different topologies into the same "molecule" John Stone (Thu Jun 10 2021 - 15:47:29 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 18:58:54 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 12:26:39 CDT)
- Lipid Packing Defect in vmd Diship Srivastava (Sun Jun 06 2021 - 04:57:06 CDT)
- Status of VR in VMD Paulo E. Abreu (Tue Jun 01 2021 - 13:46:01 CDT)
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- Fwd: VMD Timeline Plug-in Selection in Hydrogen Bonds Calculations Ebru Cetin (Wed May 26 2021 - 04:33:46 CDT)
- Atom selection with asterisk atom name Saikat Pal (Wed May 26 2021 - 02:00:59 CDT)
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- Generating parameter files Arthur Pereira da Fonseca (Wed May 19 2021 - 12:04:33 CDT)
- FFTK: dihedral containing hydrogen? Smith, Harper E. (Tue May 18 2021 - 15:42:21 CDT)
- VMD and NAMD survey invitations coming to your inbox... John Stone (Tue May 18 2021 - 14:21:55 CDT)
- Re: Angles generated by AutoPSF? Vermaas, Josh (Mon May 17 2021 - 14:23:20 CDT)
- Angles generated by AutoPSF? Smith, Harper E. (Mon May 17 2021 - 12:15:15 CDT)
- REMOVE WATER MOLECULES WITH A SPECIFIC DISTANCE Eduardo Estevez (Sun May 16 2021 - 13:13:06 CDT)
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- Clustering by RMSD Lilian Esmeralda Araujo Arcos (Wed May 12 2021 - 12:16:56 CDT)
- [topotool] writelammpsdata : custom order for atom types Yann Claveau (Wed May 12 2021 - 03:37:29 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Axel Kohlmeyer (Wed May 12 2021 - 04:30:22 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Yann Claveau (Wed May 12 2021 - 04:37:01 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Yann Claveau (Wed May 12 2021 - 08:12:59 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Axel Kohlmeyer (Wed May 12 2021 - 08:20:02 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Yann Claveau (Wed May 12 2021 - 08:29:46 CDT)
- vmd change atom type when saving lammpstrj Yann Claveau (Tue Jul 13 2021 - 08:19:38 CDT)
- Re: vmd change atom type when saving lammpstrj Axel Kohlmeyer (Tue Jul 13 2021 - 15:31:04 CDT)
- Re: vmd change atom type when saving lammpstrj Yann Claveau (Thu Jul 15 2021 - 03:27:18 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Axel Kohlmeyer (Wed May 12 2021 - 04:30:22 CDT)
- Question about error while using QwikMD files Ahmad Alqaisi (Mon May 10 2021 - 03:12:25 CDT)
- Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 Patrick Osmer (Sun May 09 2021 - 14:29:00 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 Peter Freddolino (Sun May 09 2021 - 19:17:26 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 John Stone (Mon May 10 2021 - 01:01:05 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 Peter Freddolino (Mon May 10 2021 - 08:14:12 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 John Stone (Mon May 10 2021 - 10:49:16 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 Peter Freddolino (Mon May 10 2021 - 11:03:17 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 John Stone (Mon May 10 2021 - 01:01:05 CDT)
- Re: Auto PSF problem with VMD 1.9.4a48-Catalina-Rev7 Peter Freddolino (Sun May 09 2021 - 19:17:26 CDT)
- Quicksurf crashes VMD on newest Mac version David Kastner (Thu May 06 2021 - 23:29:03 CDT)
- Tcl Scripting Question Mcguire, Kelly (Tue May 04 2021 - 12:45:55 CDT)
- rendering with a very large scene description file Vlad Cojocaru (Sun May 02 2021 - 13:10:50 CDT)
- Printing simulation box vectors to the display window Andrew DeYoung (Wed Apr 28 2021 - 15:46:29 CDT)
- Problem with Calc. inter-sel. contacts NICOL脕S D脥AZ ROUSSEL (Fri Apr 23 2021 - 07:12:40 CDT)
- Compilation error: stride_LINUXAMD64', surf_LINUXAMD64, tachyon_LINUXAMD64 : No such file or directory Chintapalli, Sree vamsee (Thu Apr 22 2021 - 14:45:29 CDT)
- BFEE plugin error: 'measure center: bad weight sum would cause divide by zero' Jovana Stelkic (Thu Apr 22 2021 - 01:25:22 CDT)
- Tachyon Render not working juan.velasquez (Mon Apr 19 2021 - 04:58:18 CDT)
- Using QwikMD with latest CHARMM36 force fields Andreas Kukol (Sat Apr 17 2021 - 03:58:22 CDT)
- vecsub: two vectors don't have the same size Francesco Pietra (Fri Apr 16 2021 - 04:36:38 CDT)
- Re: Error while compiling vmd: "libmolfile_plugin.h" Vermaas, Josh (Thu Apr 15 2021 - 13:47:19 CDT)
- Error while compiling vmd: "libmolfile_plugin.h" Chintapalli, Sree vamsee (Thu Apr 15 2021 - 12:08:04 CDT)
- Rendering using GPU Nikhil Maroli (Thu Apr 15 2021 - 02:31:50 CDT)
- Re: Rendering using GPU Paul O'Leary (Thu Apr 15 2021 - 03:45:02 CDT)
- Re: Rendering using GPU Geist, Norman (Thu Apr 15 2021 - 03:45:48 CDT)
- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 10:20:42 CDT)
- Re: Rendering using GPU Jason Smith (Thu Apr 15 2021 - 11:08:29 CDT)
- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 11:23:52 CDT)
- Re: Rendering using GPU Jason Smith (Thu Apr 15 2021 - 11:26:05 CDT)
- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 11:38:02 CDT)
- Re: Rendering using GPU Jason Smith (Thu Apr 15 2021 - 12:51:55 CDT)
- Re: Rendering using GPU Nikhil Maroli (Fri Apr 16 2021 - 12:16:41 CDT)
- Re: Rendering using GPU John Stone (Fri Apr 16 2021 - 13:01:03 CDT)
- Re: Rendering using GPU Jason Smith (Fri Apr 16 2021 - 13:18:02 CDT)
- Re: Rendering using GPU Carlos Simmerling (Thu Apr 15 2021 - 11:52:07 CDT)
- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 10:20:42 CDT)
- Re: ethanol solvation box Vermaas, Josh (Wed Apr 14 2021 - 18:35:05 CDT)
- A question about atomic symbol and cell-border width using VMD Hamza Bouafia (Tue Apr 13 2021 - 18:29:03 CDT)
- stride not showing all helix section after VMD crash Carlos Simmerling (Tue Apr 13 2021 - 16:28:22 CDT)
- CIonize Not Installed on Windows VMD Arash Firouzbakht (Tue Apr 13 2021 - 14:33:15 CDT)
- Visual Help Mcguire, Kelly (Sun Apr 11 2021 - 20:38:48 CDT)
- Loading files Karteek K. Bejagam (Wed Apr 07 2021 - 12:55:49 CDT)
- VMD web/email outage today Tuesday 4/6 John Stone (Tue Apr 06 2021 - 12:57:55 CDT)
- secondary structure of a protein containing non-canonical residues Arash Firouzbakht (Tue Apr 06 2021 - 09:59:48 CDT)
- (no subject) Kabir Biswas (Mon Apr 05 2021 - 17:45:40 CDT)
- VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 15:31:11 CDT)
- Re: VMD 1.9.4 won't open .crd files John Stone (Mon Apr 05 2021 - 15:33:19 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 15:41:45 CDT)
- Re: VMD 1.9.4 won't open .crd files Vermaas, Josh (Mon Apr 05 2021 - 16:37:56 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 16:49:29 CDT)
- Re: VMD 1.9.4 won't open .crd files Vermaas, Josh (Mon Apr 05 2021 - 18:18:20 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 19:10:18 CDT)
- Re: VMD 1.9.4 won't open .crd files mohamed marzouk (Tue Apr 06 2021 - 02:50:07 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 15:41:45 CDT)
- Re: VMD 1.9.4 won't open .crd files John Stone (Mon Apr 05 2021 - 15:33:19 CDT)
- Ultra-violet environment simulation in NAMD Faisal, H M Nasrullah (Mon Apr 05 2021 - 10:55:08 CDT)
- histidine protonation Francesco Pietra (Fri Apr 02 2021 - 11:52:43 CDT)
- Re: histidine protonation Vermaas, Josh (Fri Apr 02 2021 - 13:26:13 CDT)
- Re: histidine protonation Gumbart, JC (Fri Apr 02 2021 - 15:43:20 CDT)
- Re: histidine protonation Vermaas, Josh (Fri Apr 02 2021 - 18:35:53 CDT)
- Re: histidine protonation Francesco Pietra (Sat Apr 03 2021 - 02:11:17 CDT)
- Re: histidine protonation Carlos Simmerling (Sat Apr 03 2021 - 09:44:24 CDT)
- Re: histidine protonation Miro Astore (Sat Apr 03 2021 - 19:28:57 CDT)
- Re: histidine protonation Francesco Pietra (Sun Apr 04 2021 - 08:53:46 CDT)
- Re: histidine protonation Gumbart, JC (Sun Apr 04 2021 - 13:39:18 CDT)
- Re: histidine protonation Brian Radak (Sun Apr 04 2021 - 14:56:14 CDT)
- Re: histidine protonation Francesco Pietra (Sat Apr 03 2021 - 09:22:03 CDT)
- Re: histidine protonation Francesco Pietra (Thu Apr 15 2021 - 09:35:08 CDT)
- Re: histidine protonation Gumbart, JC (Fri Apr 02 2021 - 15:43:20 CDT)
- Re: histidine protonation Vermaas, Josh (Fri Apr 02 2021 - 13:26:13 CDT)
- pbwithin a defined coordinate MD Simulation (Tue Mar 30 2021 - 08:48:51 CDT)
- Electrostatic Potential membrane pores Satyan Sharma (Tue Mar 30 2021 - 03:52:44 CDT)
- change color sequence used in label graphs? Carlos Simmerling (Mon Mar 29 2021 - 14:00:55 CDT)
- Moment of inertia script David Gae (Fri Mar 26 2021 - 15:11:54 CDT)
- Switching from MP2 in FFTK? Smith, Harper E. (Fri Mar 26 2021 - 11:15:10 CDT)
- parameterizing a peptide with a methylated backbone nitrogen SHIVAM TIWARI (Thu Mar 25 2021 - 04:28:36 CDT)
- (no subject) soumadwip ghosh (Thu Mar 25 2021 - 02:57:21 CDT)
- attachment file size limit for the mailing list SHIVAM TIWARI (Thu Mar 25 2021 - 00:19:00 CDT)
- Problem in opening VMD on macOS Catalina Mahsa (Wed Mar 24 2021 - 07:02:09 CDT)
- modify and save updated PSF and CRD files soumadwip ghosh (Wed Mar 24 2021 - 04:02:20 CDT)
- VMD web/email outage most of Tuesday March 23rd John Stone (Mon Mar 22 2021 - 22:45:54 CDT)
- how to generate different starting points to do the md simulations Seera Suryanarayana (Mon Mar 22 2021 - 02:02:18 CDT)
- FFTK: Dihedral scan trans/cis Daniel Fellner (Sun Mar 21 2021 - 06:28:55 CDT)
- Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sat Mar 20 2021 - 23:15:56 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Axel Kohlmeyer (Sun Mar 21 2021 - 00:18:28 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sun Mar 21 2021 - 00:57:03 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Peter Freddolino (Sun Mar 21 2021 - 10:36:48 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sun Mar 21 2021 - 15:58:22 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Peter Freddolino (Sun Mar 21 2021 - 16:01:32 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sun Mar 21 2021 - 00:57:03 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Axel Kohlmeyer (Sun Mar 21 2021 - 00:18:28 CDT)
- Problem with the Box Amnah Alalmaie (Thu Mar 18 2021 - 15:43:30 CDT)
- Could not load .nc file in MAC installed VMD Prathit Chatterjee (Wed Mar 17 2021 - 03:03:39 CDT)
- cannot visualize GROMACS trajectories in VMD 1.9.4 on MacOS Big Sur Davide Marchi (Tue Mar 16 2021 - 05:48:35 CDT)
- set non-zero box sizes for GAMESS output marco di gennaro (Tue Mar 16 2021 - 03:06:35 CDT)
- Problems MacOS Big Sur Sergio Perez (Mon Mar 15 2021 - 02:06:51 CDT)
- Re: Molefacture and writegmxtop stops with no error fan li (Sun Mar 14 2021 - 13:12:00 CDT)
- Trouble launching VMD in Apple M1 Neelanjana Sengupta (Fri Mar 12 2021 - 21:54:49 CST)
- TCL script to measure distance between two points in space William Howe (Wed Mar 10 2021 - 17:19:18 CST)
- Re: Solvating with Pre-equilibration ethanol box Raisa Carmen Andeme Ela (Tue Mar 09 2021 - 15:43:10 CST)
- psfgen on console missing dihedral parameters for standard residues Prof. Eddie (Tue Mar 09 2021 - 13:00:06 CST)
- fftk wat. opt. when charges overlap Prof. Eddie (Mon Mar 08 2021 - 08:46:07 CST)
- Surf drawing representation fails after negative circle radius Christian Seitz (Mon Mar 08 2021 - 01:50:03 CST)
- PBC Shift Center Mcguire, Kelly (Sun Mar 07 2021 - 14:31:30 CST)
- Custom particle shapes Johannes Haataja (Sat Mar 06 2021 - 06:27:04 CST)
- how to change working directory for viewmaster? Carlos Simmerling (Fri Mar 05 2021 - 09:56:07 CST)
- Problems MacOS Big Sur Sergio Perez (Fri Mar 05 2021 - 02:13:18 CST)
- Error defining "clusters" in NetworkView? Smith, Harper E. (Thu Mar 04 2021 - 18:18:26 CST)
- VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" Ren茅 Hafner TUK (Thu Mar 04 2021 - 14:21:27 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" Giacomo Fiorin (Fri Mar 05 2021 - 11:46:59 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now Ren茅 Hafner TUK (Sat Mar 06 2021 - 10:14:12 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now John Stone (Sat Mar 06 2021 - 12:37:13 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now Ren茅 Hafner TUK (Sat Mar 06 2021 - 15:21:00 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now John Stone (Sat Mar 06 2021 - 15:26:51 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now Ren茅 Hafner TUK (Sat Mar 06 2021 - 16:20:35 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now John Stone (Sat Mar 06 2021 - 16:30:09 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now Ren茅 Hafner TUK (Sat Mar 06 2021 - 10:14:12 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" Giacomo Fiorin (Fri Mar 05 2021 - 11:46:59 CST)
- Redundant entries in force field parameters generated by paratool plugin in VMD Mandayam Bharathi, Harsha (Wed Mar 03 2021 - 12:03:25 CST)
- Using writelammpsdata in 1.9.4 Robert Chan-Jobe (Tue Mar 02 2021 - 19:11:58 CST)
- Render image background-free Pacci Evaristo, Felipe Fabricio (Tue Mar 02 2021 - 13:43:02 CST)
- trouble with multiseq Hedlund, Erik (Tue Mar 02 2021 - 10:34:01 CST)
- Reduce Waterbox Dimensions Post Simulation Mcguire, Kelly (Mon Mar 01 2021 - 18:13:04 CST)
- Custom residue in mutate psfgen Prof. Eddie (Mon Mar 01 2021 - 14:10:15 CST)
- Fwd: Problem with QwikMD analysis Ranabir Majumder (Mon Mar 01 2021 - 13:29:03 CST)
- (no subject) soumadwip ghosh (Mon Mar 01 2021 - 03:13:50 CST)
- New User Cannot Access VMD on Windows Phelan Jr., Frederick R. Dr. (Fed) (Fri Feb 26 2021 - 18:20:29 CST)
- Couldn't read internal coordinate table and list index out of range Ruijie Darius Teo (Tue Feb 23 2021 - 13:58:49 CST)
- Problem in DISPLAY of VMD from remote server in local Mac Machine Prathit Chatterjee (Tue Feb 23 2021 - 07:20:39 CST)
- question about RDF parinaz bashirbanaem (Fri Feb 19 2021 - 11:19:36 CST)
- question about RDF parinaz bashirbanaem (Fri Feb 19 2021 - 10:46:32 CST)
- Plotting orbitals from Molden file Chang, Christopher (Tue Feb 16 2021 - 16:53:56 CST)
- Native contacts tcl script crashed Sunita Patel (Tue Feb 16 2021 - 05:01:30 CST)
- Re: Native contacts tcl script crashed Axel Kohlmeyer (Tue Feb 16 2021 - 05:12:14 CST)
- Re: Native contacts tcl script crashed Sunita Patel (Thu Feb 18 2021 - 00:36:29 CST)
- Re: Native contacts tcl script crashed Ashar Malik (Thu Feb 18 2021 - 01:02:58 CST)
- Re: Native contacts tcl script crashed Axel Kohlmeyer (Thu Feb 18 2021 - 01:13:34 CST)
- AW: Native contacts tcl script crashed Norman Geist (Thu Feb 18 2021 - 01:53:14 CST)
- Re: Native contacts tcl script crashed Sunita Patel (Thu Feb 18 2021 - 23:07:53 CST)
- Re: Native contacts tcl script crashed John Stone (Fri Feb 19 2021 - 02:02:56 CST)
- Re: Native contacts tcl script crashed Sunita Patel (Thu Feb 18 2021 - 00:36:29 CST)
- Re: Native contacts tcl script crashed Axel Kohlmeyer (Tue Feb 16 2021 - 05:12:14 CST)
- Calculation of residue pair energy values Daniel STERBULEAC (Sun Feb 14 2021 - 16:46:12 CST)
- Calculation of residue pair energy values Manas Kohli (Sun Feb 14 2021 - 07:54:51 CST)
- ffTK torsion scan? Smith, Harper E. (Thu Feb 11 2021 - 18:30:51 CST)
- Problem in VMD Big Sur Sherif Arafa (Thu Feb 11 2021 - 14:41:37 CST)
- VMD. PSF and lone pairs Jos茅 Villala铆n (Thu Feb 11 2021 - 08:23:50 CST)
- Topology for carbon nanotube compatible to Amber Shilpa Gupta (Wed Feb 10 2021 - 02:56:34 CST)
- No residue of segment error Isuru Herath (Sun Feb 07 2021 - 14:16:26 CST)
- Test email Giuseppe Licari (Fri Feb 05 2021 - 12:24:38 CST)
- Test email GIUSEPPE LEONARDO LICARI (Fri Feb 05 2021 - 12:04:17 CST)
- Pbc box on, default Henrik Hariman (Wed Feb 03 2021 - 12:42:28 CST)
- Angles between two groups of atoms Enzo Claudino (Wed Feb 03 2021 - 12:19:00 CST)
- fftk and charmmgui vdW parameters Prof. Eddie (Wed Feb 03 2021 - 10:29:56 CST)
- Creating PDB files of binding pockets that lists ligands first within the file William Howe (Tue Feb 02 2021 - 18:14:55 CST)
- how to search for existing topology SHIVAM TIWARI (Sun Jan 31 2021 - 06:22:14 CST)
- Dealing with lone pairs in fftk Emma Wu (Sat Jan 30 2021 - 20:31:30 CST)
- Deselecting the atoms Yuvam Bhateja (Fri Jan 29 2021 - 10:11:33 CST)
- Electrostatic potential values Araz Jakalian (Fri Jan 29 2021 - 08:29:12 CST)
- setting coloring and drawing methods Magnus Andersson (Fri Jan 29 2021 - 08:05:24 CST)
- launching fftk Prof. Eddie (Wed Jan 27 2021 - 16:36:47 CST)
- PBC wrap with an octahedral water box Benedetta Sampoli Benitez (Wed Jan 27 2021 - 11:44:46 CST)
- novel residue creation and parameterization Prof. Eddie (Wed Jan 27 2021 - 08:33:12 CST)
- Re: novel residue creation and parameterization Raman Preet Singh (Wed Jan 27 2021 - 11:28:56 CST)
- Re: novel residue creation and parameterization Smith, Harper E. (Wed Jan 27 2021 - 11:42:22 CST)
- Re: novel residue creation and parameterization Vermaas, Josh (Wed Jan 27 2021 - 12:01:29 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Wed Jan 27 2021 - 17:46:11 CST)
- Re: novel residue creation and parameterization Peter Freddolino (Wed Jan 27 2021 - 20:13:30 CST)
- remove my email from mailing list Rejwan (Wed Jan 27 2021 - 22:06:53 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Thu Jan 28 2021 - 10:45:17 CST)
- Re: novel residue creation and parameterization Mariano Spivak (Thu Jan 28 2021 - 11:40:10 CST)
- Re: novel residue creation and parameterization Peter Freddolino (Thu Jan 28 2021 - 12:23:51 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Thu Jan 28 2021 - 14:21:13 CST)
- Re: novel residue creation and parameterization Smith, Harper E. (Thu Jan 28 2021 - 14:36:52 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Thu Jan 28 2021 - 15:22:59 CST)
- Re: novel residue creation and parameterization Peter Freddolino (Thu Jan 28 2021 - 16:21:29 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Wed Feb 03 2021 - 10:14:56 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Wed Jan 27 2021 - 17:46:11 CST)
- Compiling VMD with the TNG plugin Dominic Hayward (Mon Jan 25 2021 - 11:46:41 CST)
- Netcdf files mohamed marzouk (Mon Jan 25 2021 - 04:57:34 CST)
- Problem with visualizing trajectory produced in Amber Christopher Gaughan (Mon Jan 25 2021 - 02:05:51 CST)
- Re: OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Maria Dimitrova (Thu Jan 21 2021 - 06:32:59 CST)
- Re: OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Axel Kohlmeyer (Thu Jan 21 2021 - 07:15:46 CST)
- Re: OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Maria Dimitrova (Fri Jan 22 2021 - 02:21:56 CST)
- OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Maria Dimitrova (Thu Jan 21 2021 - 05:22:57 CST)
- How to keep particular water molecules within the cut off during the simulations Seera Suryanarayana (Wed Jan 20 2021 - 23:15:37 CST)
- Coarse-Graining Protein with Ion Ligands Isuru Herath (Wed Jan 20 2021 - 21:12:31 CST)
- Fixing Memory Overflow Issue with LJ Parameter Assignment Timothy Leong (Wed Jan 20 2021 - 12:23:53 CST)
- Fwd: Naming Atoms in VMD David Alejandro Rinc贸n Daza (Tue Jan 19 2021 - 16:27:44 CST)
- Flipping vector in orient Raul Araya (Tue Jan 19 2021 - 09:21:39 CST)
- Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Mon Jan 18 2021 - 16:31:20 CST)
- Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Thu Jan 28 2021 - 16:28:57 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Gumbart, JC (Mon Feb 01 2021 - 09:49:35 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Mon Feb 01 2021 - 11:10:34 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Daniel Fellner (Mon Feb 01 2021 - 18:45:03 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Tue Feb 02 2021 - 08:20:56 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Gumbart, JC (Mon Feb 01 2021 - 09:49:35 CST)
- Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Thu Jan 28 2021 - 16:28:57 CST)
- Clipping plane Edgar Galicia (Mon Jan 18 2021 - 11:58:43 CST)
- Tachyon sometimes suddenly freezes up when rendering epotential images Soumik Ghosh (Sun Jan 17 2021 - 11:00:56 CST)
- Question about NAMD configuration files Tiglath Moradkhan (Fri Jan 15 2021 - 18:37:04 CST)
- Packing periodic simulation using Pbc wrap error Rakesh K (Thu Jan 14 2021 - 06:41:38 CST)
- Moving Graphics Primitives to Front/Back Timothy Leong (Tue Jan 12 2021 - 09:18:16 CST)
- vector flips Raul Araya (Mon Jan 11 2021 - 15:56:27 CST)
- Update on email sent last week Tiglath Moradkhan (Mon Jan 11 2021 - 12:00:46 CST)
- NAMD RBCG Tutorial dssp Isuru Herath (Sun Jan 10 2021 - 12:58:16 CST)
- Problem when rendering within a tcl loop Arham Amouie (Sun Jan 10 2021 - 04:17:35 CST)
- Problem with running NAMD configuration file Tiglath Moradkhan (Fri Jan 08 2021 - 18:07:43 CST)
- FFTK Issue: Not able to visualize dihedral scan Akash Banerjee (Fri Jan 08 2021 - 17:41:07 CST)
- model with TIP4 water minimization getting crashed every time Faisal, H M Nasrullah (Thu Jan 07 2021 - 21:56:25 CST)
- Problem with following NAMD tutorial Tiglath Moradkhan (Thu Jan 07 2021 - 19:17:22 CST)
- (no subject) K Jan (Thu Jan 07 2021 - 18:18:59 CST)
- FFTK dihedral paramterization Akash Banerjee (Thu Jan 07 2021 - 16:06:23 CST)
- Change Font on VMD Main Window -- Linux Rudy Richardson (Thu Jan 07 2021 - 14:42:13 CST)
- Running equilibration MD simulation Tiglath Moradkhan (Tue Jan 05 2021 - 15:06:41 CST)
- RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Mon Jan 04 2021 - 18:54:26 CST)
- RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:20:21 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 16:48:47 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:54:18 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 16:58:26 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 17:08:44 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:58:04 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 17:14:13 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 17:25:09 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 17:29:43 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 16:48:47 CST)
- RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:20:21 CST)
- /usr/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libOpenGL.so.0: Mi Yang (Mon Jan 04 2021 - 08:40:42 CST)
- Tk Console dsspcmbi file Isuru Herath (Sat Jan 02 2021 - 15:38:04 CST)
- Install VMD with goal of enabling Intel OSPray renderer Chris Taylor (Fri Jan 01 2021 - 03:59:34 CST)
- Random deletions of molecules Tiglath Moradkhan (Wed Dec 30 2020 - 16:22:15 CST)
- CHARMM parameters for ADP-ribosylated arginine? Smith, Harper E. (Tue Dec 29 2020 - 16:03:51 CST)
- Error with RESP in ffTK Emma Wu (Sun Dec 27 2020 - 22:00:35 CST)
- Windows VMD 1.9.4a Version Failing Emma Wu (Sun Dec 27 2020 - 19:16:24 CST)
- VMD NetCDF plugin on POWER9 CPUs (like ORNL Summit) Chris Neale (Sat Dec 26 2020 - 11:49:32 CST)
- PSF Files Giving Long Bonds Isuru Herath (Fri Dec 25 2020 - 08:23:49 CST)
- Fake angles created by AutoPSF Francesco Pietra (Wed Dec 23 2020 - 08:52:35 CST)
- Query regarding 'Protein:ligand Standard Binding Free Energies' tutorial Faisal, H M Nasrullah (Tue Dec 22 2020 - 14:39:15 CST)
- Molecule is shown with too many bonds Domenico Riolfi Barzotto (Fri Dec 18 2020 - 08:32:48 CST)
- PDB Format McGuire, Kelly (Thu Dec 17 2020 - 18:52:37 CST)
- Qurry Regarding Vizualization of two data sets Shubham Agarwal (Thu Dec 17 2020 - 04:38:15 CST)
- Dipole Moment Measurement Hamish Swanson (Wed Dec 16 2020 - 08:04:59 CST)
- VMD and BigSur Alex Peralvarez Marin (Wed Dec 16 2020 - 08:32:01 CST)
- 1.9.4a50 - unable to open DCDs win64 Jason Smith (Wed Dec 16 2020 - 19:35:18 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Wed Dec 16 2020 - 20:32:27 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Thu Dec 17 2020 - 09:43:05 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jason Smith (Thu Dec 17 2020 - 21:11:57 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 J茅r么me H茅nin (Fri Dec 18 2020 - 08:45:13 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Giacomo Fiorin (Fri Dec 18 2020 - 09:51:52 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Fri Dec 18 2020 - 10:10:27 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jason Smith (Fri Dec 18 2020 - 12:01:59 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Fri Dec 18 2020 - 10:22:58 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jason Smith (Thu Dec 17 2020 - 21:11:57 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Thu Dec 17 2020 - 22:49:39 CST)
- Identifying salt bridges between chains Tiglath Moradkhan (Wed Dec 16 2020 - 14:32:10 CST)
- Qurry Regarding Vizualization og two data sets Shubham Agarwal (Tue Dec 15 2020 - 09:05:05 CST)
- VMD 1.9.4a50 64-bit Windows test build posted John Stone (Mon Dec 14 2020 - 23:46:50 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 04:11:28 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 09:17:09 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 09:33:50 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 09:52:45 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 10:08:42 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted J茅r么me H茅nin (Tue Dec 15 2020 - 10:46:55 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 11:12:20 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 12:06:50 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 13:24:22 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 15:03:03 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 15:27:01 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 01:57:17 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 04:44:38 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 09:12:02 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 10:31:30 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 10:57:22 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 13:49:53 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 14:07:55 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 14:16:41 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 14:20:44 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed May 19 2021 - 03:28:31 CDT)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed May 19 2021 - 09:13:43 CDT)
- Re: VMD 1.9.4a50 64-bit Windows test build posted J茅r么me H茅nin (Tue Dec 15 2020 - 11:09:20 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 11:16:05 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Carlos Simmerling (Tue Dec 15 2020 - 09:58:37 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 11:06:47 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 09:17:09 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 04:11:28 CST)
- VMD aborts when setting up MD simulation Tiglath Moradkhan (Mon Dec 14 2020 - 12:36:01 CST)
- VMD 1.9.4a50 test versions for MacOS Big Sur -- both x86 and ARM64 (M1) John Stone (Mon Dec 14 2020 - 01:55:40 CST)
- Re: VMD 1.9.4a50 test versions for MacOS Big Sur -- both x86 and ARM64 (M1) Pacci Evaristo, Felipe Fabricio (Mon Dec 14 2020 - 09:37:03 CST)
- SBCG of molecules Raman Preet Singh (Sat Dec 12 2020 - 12:29:43 CST)
- ProDy issue with QMonly.psf/dcd from QMMM NAMD-ORCA simulations Francesco Pietra (Sat Dec 12 2020 - 10:39:41 CST)
- FW: Seeking assistance Onur Alpt黵k (Sat Dec 12 2020 - 08:01:31 CST)
- Incorrect visualization of system after catdcd Kandarp Sojitra (Sat Dec 12 2020 - 06:36:45 CST)
- VMD junt won't work on Windows Gustavo Scheiffer (Sat Dec 12 2020 - 01:01:30 CST)
- Re: VMD junt won't work on Windows John Stone (Tue Dec 15 2020 - 00:46:32 CST)
- Re: VMD junt won't work on Windows Gustavo Scheiffer (Tue Dec 15 2020 - 13:03:45 CST)
- Re: VMD junt won't work on Windows Stefan Boresch (Tue Dec 15 2020 - 14:16:56 CST)
- Re: VMD junt won't work on Windows Gustavo Scheiffer (Fri Dec 18 2020 - 11:09:24 CST)
- Re: VMD junt won't work on Windows John Stone (Thu Dec 31 2020 - 12:01:56 CST)
- Re: VMD junt won't work on Windows Stefan Boresch (Mon Jan 04 2021 - 04:23:11 CST)
- Re: VMD junt won't work on Windows Gustavo Scheiffer (Tue Dec 15 2020 - 13:03:45 CST)
- Re: VMD junt won't work on Windows John Stone (Tue Dec 15 2020 - 00:46:32 CST)
- Manipulating volumes in VMD Bassam Haddad (Thu Dec 10 2020 - 16:18:23 CST)
- Problem with rendering modified bond label position with Tachyon Antonija Tomi膰 (Thu Dec 10 2020 - 12:38:20 CST)
- (no subject) Ashma Khan (Thu Dec 10 2020 - 10:16:13 CST)
- confusing about the residue number Ashma Khan (Wed Dec 09 2020 - 22:43:18 CST)
- Problem resolved Tiglath Moradkhan (Wed Dec 09 2020 - 15:33:42 CST)
- My Protein is a homology model Tiglath Moradkhan (Wed Dec 09 2020 - 13:32:18 CST)
- VMD version Tiglath Moradkhan (Wed Dec 09 2020 - 12:25:44 CST)
- Ongoing problem with QwickMD plugin Tiglath Moradkhan (Wed Dec 09 2020 - 12:09:04 CST)
- Movie Making Troubles Demy Hernandez (Tue Dec 08 2020 - 18:48:07 CST)
- Problems with QwickMD plugin Tiglath Moradkhan (Tue Dec 08 2020 - 16:23:48 CST)
- RMSF Trajectory extraction script Mi Yang (Tue Dec 08 2020 - 05:39:33 CST)
- How to measure several angles? David Alejandro Rinc贸n Daza (Mon Dec 07 2020 - 15:55:19 CST)
- VMD for macOS Big Sur Pacci Evaristo, Felipe Fabricio (Sun Dec 06 2020 - 16:35:36 CST)
- (no subject) Arthur Pereira da Fonseca (Sat Dec 05 2020 - 15:31:30 CST)
- Re: [EXTERNAL]Re: h-bond plugin with QMMM Rafael Bernardi (Thu Dec 03 2020 - 10:44:37 CST)
- Dipole Moment calculation Shounak Mukherjee (Wed Dec 02 2020 - 04:16:34 CST)
- h-bond plugin with QMMM Francesco Pietra (Wed Dec 02 2020 - 03:56:05 CST)
- Error tachyon rendering Mac Catalina fabio trovato (Sat Nov 28 2020 - 19:22:27 CST)
- VMD crash due to large volume of .dcd file Mi Yang (Sat Nov 28 2020 - 13:49:16 CST)
- Readpsf Error Isuru Herath (Sat Nov 28 2020 - 13:01:55 CST)
- Re: Readpsf Error Peter Freddolino (Sat Nov 28 2020 - 18:03:01 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 08:56:47 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 08:58:31 CST)
- Re: Readpsf Error Aravinda Munasinghe (Sun Nov 29 2020 - 09:29:34 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 09:38:20 CST)
- Re: Readpsf Error Aravinda Munasinghe (Sun Nov 29 2020 - 10:19:45 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 10:22:56 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 10:15:42 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 08:56:47 CST)
- Re: Readpsf Error Aravinda Munasinghe (Sun Nov 29 2020 - 08:48:32 CST)
- Re: Readpsf Error Peter Freddolino (Sat Nov 28 2020 - 18:03:01 CST)
- Gaussian aborting during ffTK - Calc.Bonded Jason Smith (Wed Nov 25 2020 - 23:18:10 CST)
- Packing periodic simulation using Pbc wrap error Rakesh K (Tue Nov 24 2020 - 12:22:26 CST)
- Possible memory leak in vmd 1.9.4a38 or FFTK on Linux Pawel Kedzierski (Tue Nov 24 2020 - 07:35:35 CST)
- Number of water molecules as a function of residue Akash Pandya (Tue Nov 24 2020 - 04:07:02 CST)
- Glycoprotein simulation answer Daniel STERBULEAC (Fri Nov 20 2020 - 23:51:08 CST)
- Outdated Tutorial Files? Eashan C (Fri Nov 20 2020 - 23:17:00 CST)
- Glycoprotein simulation Manas Kohli (Fri Nov 20 2020 - 14:25:18 CST)
- Ambient occlusion / Electrostatic surfaces Lothar Esser (Fri Nov 20 2020 - 12:30:57 CST)
- AVX512 support on Linux. Zhu Liang (Thu Nov 19 2020 - 10:33:42 CST)
- Trajectory analysis without loading all frames Raman Preet Singh (Thu Nov 19 2020 - 08:35:23 CST)
- charge opt not converged Lokendra Poudel (Wed Nov 18 2020 - 10:12:40 CST)
- Re: charge opt not converged Gumbart, JC (Wed Nov 18 2020 - 14:35:01 CST)
- VMD running on Mac OS Big Sur Atreyo Pal (Tue Nov 17 2020 - 20:28:30 CST)
- extended system file not found Eashan C (Tue Nov 17 2020 - 18:36:59 CST)
- Startup problem on Windows Stefan Boresch (Tue Nov 17 2020 - 03:39:20 CST)
- Error "vecscale: parameters must have data" in water interaction step of FFTK Alexandre Suman de Ara煤jo (Mon Nov 16 2020 - 08:49:36 CST)
- Saving updated trajectory coordinates of selected atoms SHRAVANI NETHI . (Mon Nov 16 2020 - 07:07:46 CST)
- Sorting as an increasing function of the integers in suffices Prathit Chatterjee (Mon Nov 16 2020 - 05:31:29 CST)
- (no subject) Eashan C (Mon Nov 16 2020 - 00:32:30 CST)
- Translation Script Demy Hernandez (Tue Nov 10 2020 - 10:55:28 CST)
- cionize plugin VMD Atreyo Pal (Mon Nov 09 2020 - 11:33:51 CST)
- Windows Server 2019 support issue of VMD and NAMD Gawtak Kim (Sun Nov 08 2020 - 20:44:53 CST)
- Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sat Nov 07 2020 - 07:22:40 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Sat Nov 07 2020 - 19:35:23 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sun Nov 08 2020 - 21:50:23 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sun Nov 08 2020 - 21:55:55 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Mon Nov 09 2020 - 00:15:42 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Mon Nov 09 2020 - 01:14:26 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Fri Nov 20 2020 - 04:49:42 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Fri Nov 20 2020 - 11:47:47 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Fri Nov 20 2020 - 22:40:10 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sun Nov 08 2020 - 21:50:23 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Sat Nov 07 2020 - 19:35:23 CST)
- VMD clustering of conformations Jeff Saxon (Sat Nov 07 2020 - 04:57:59 CST)
- Error in charge optimization Nibedita Ray Chaudhuri (Fri Nov 06 2020 - 05:22:09 CST)
- Re: Potential bugs in ffTK dihedral optimization Mariano Spivak (Thu Nov 05 2020 - 14:53:51 CST)
- Analysis of DLG filles Jeff Saxon (Thu Nov 05 2020 - 10:45:19 CST)
- Re: Analysis of DLG filles John Stone (Thu Nov 05 2020 - 10:49:39 CST)
- Re: Analysis of DLG filles Paolo Conflitti (Fri Nov 06 2020 - 03:00:43 CST)
- Visualizing forces from .forcedcd files? Smith, Harper E. (Wed Nov 04 2020 - 12:52:17 CST)
- Restraining selected atoms with multimer Francesco Pietra (Wed Nov 04 2020 - 04:36:11 CST)
- Re: VMD 1.9.4 a48 fails to build from source yjcoshc (Wed Nov 04 2020 - 03:22:28 CST)
- Pulling vector direction in SMD miyatake_at_riken.jp (Wed Nov 04 2020 - 02:57:00 CST)
- Pulling vector direction in SMD miyatake_at_riken.jp (Wed Nov 04 2020 - 02:51:09 CST)
- VMD 1.9.4 a48 fails to build from source yjcoshc (Tue Nov 03 2020 - 19:22:56 CST)
- Autopsf Failed on end of segment Francesco Pietra (Tue Nov 03 2020 - 06:55:01 CST)
- Re: Molefacture 2.0 - missing functionality? Pawel Kedzierski (Fri Oct 30 2020 - 14:54:21 CDT)
- Molefacture 2.0 - missing functionality? Pawel Kedzierski (Fri Oct 30 2020 - 07:17:00 CDT)
- PSFGEN vs AUTOPSF White, Mark (Thu Oct 29 2020 - 18:10:37 CDT)
- Unknown atom type while running psfgen Arusha Acharyya (Mon Oct 26 2020 - 20:37:20 CDT)
- Ospray vs Optix McGuire, Kelly (Fri Oct 23 2020 - 03:27:11 CDT)
- PBC Wrapping McGuire, Kelly (Thu Oct 22 2020 - 16:06:22 CDT)
- Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 13:09:34 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 13:47:24 CDT)
- Re: Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 14:16:06 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 14:28:43 CDT)
- Re: Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 14:33:57 CDT)
- Re: Calculating mean square displacement and removing PBC Josh Vermaas (Thu Oct 22 2020 - 14:50:49 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 15:03:21 CDT)
- Re: Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 14:16:06 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 13:47:24 CDT)
- Failing to load AMBER parameter files in VMD Prathit Chatterjee (Thu Oct 22 2020 - 06:11:34 CDT)
- "atomsel: set: bad data in 0th element" ffTK Emma Wu (Thu Oct 22 2020 - 00:25:01 CDT)
- VMD Align command Daniel STERBULEAC (Mon Oct 19 2020 - 15:33:46 CDT)
- Colors in VMd graphics Remya Ann (Sat Oct 17 2020 - 13:46:52 CDT)
- Combining fragments for parameterization Emma Wu (Thu Oct 15 2020 - 00:50:30 CDT)
- Error in PSFGEN Bassam Haddad (Wed Oct 14 2020 - 18:15:45 CDT)
- Unable to open TkConsole, Possible bug! Adupa Vasista (Wed Oct 14 2020 - 01:51:21 CDT)
- charge optimization Lokendra Poudel (Tue Oct 13 2020 - 17:55:20 CDT)
- error in reading Gaussian log file Lokendra Poudel (Tue Oct 13 2020 - 14:15:39 CDT)
- videostream command? Josh Vermaas (Sat Oct 10 2020 - 17:58:41 CDT)
- Error in building a psf file for nanoparticle Yuvam Bhateja (Sat Oct 10 2020 - 03:04:41 CDT)
- Formation of a nanoparticle-ligand complex Yuvam Bhateja (Fri Oct 09 2020 - 14:10:08 CDT)
- Set molecule ID by topo tools fan li (Fri Oct 09 2020 - 11:26:04 CDT)
- VMD images/movies of SARS-CoV-2 work in NYT... John Stone (Fri Oct 09 2020 - 11:07:32 CDT)
- Bond/angle optimization using FFTK Minh Ho (Thu Oct 08 2020 - 16:39:46 CDT)
- covalent atomic radii customization fulvio ciriaco (Thu Oct 08 2020 - 14:18:30 CDT)
- QwikMD premature exit John Keller (Wed Oct 07 2020 - 16:30:11 CDT)
- Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Wed Oct 07 2020 - 13:44:43 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Josh Vermaas (Wed Oct 07 2020 - 14:48:53 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Wed Oct 07 2020 - 15:28:52 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Axel Kohlmeyer (Wed Oct 07 2020 - 16:08:35 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Robin Betz (Wed Oct 07 2020 - 18:26:41 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? JC Gumbart (Wed Oct 07 2020 - 19:31:08 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Aaron Oakley (Wed Oct 07 2020 - 20:13:58 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Thu Oct 08 2020 - 10:04:11 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Wed Oct 07 2020 - 15:28:52 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Josh Vermaas (Wed Oct 07 2020 - 14:48:53 CDT)
- FFTK: Water Interactions, Steric Clashes Emma Wu (Tue Oct 06 2020 - 22:13:31 CDT)
- shifting of ions from +z to -z in a single frame(1ps) Basanta Acharya (Tue Oct 06 2020 - 21:39:01 CDT)
- Silver nanoparticle with coating of protein. Yuvam Bhateja (Tue Oct 06 2020 - 11:17:26 CDT)
- placing graphics objects at fixed locations on the display Goedde, Chris (Mon Oct 05 2020 - 14:39:02 CDT)
- Vmd uninstallation and reinstallation achchirangeebi (Sat Oct 03 2020 - 05:23:49 CDT)
- Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Fri Oct 02 2020 - 18:29:40 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Daniel Fellner (Fri Oct 02 2020 - 18:39:32 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Fri Oct 02 2020 - 18:44:37 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) John Stone (Tue Oct 06 2020 - 10:36:39 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Wed Oct 07 2020 - 10:12:38 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Wed Oct 07 2020 - 10:22:21 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Fri Oct 02 2020 - 18:44:37 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Daniel Fellner (Fri Oct 02 2020 - 18:39:32 CDT)
- How select atoms from mol 0 within "x" of mol 1? Asghar Razavi (Thu Oct 01 2020 - 12:20:19 CDT)
- TCL force script Basanta Acharya (Thu Oct 01 2020 - 02:29:01 CDT)
- TCL script for creating multiple representations on the same molecule William Howe (Wed Sep 30 2020 - 19:17:54 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Wed Sep 30 2020 - 11:16:29 CDT)
- Re: Converting electron density data from .map to .dx in vmd JC Gumbart (Wed Sep 30 2020 - 13:35:30 CDT)
- Re: Converting electron density data from .map to .dx in vmd John Stone (Tue Oct 06 2020 - 20:57:44 CDT)
- high quality videos omid gh (Wed Sep 30 2020 - 11:03:01 CDT)
- increase the resolution of images omid gh (Tue Sep 29 2020 - 13:34:31 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Tue Sep 29 2020 - 08:54:29 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:33:26 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:58:18 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:56:46 CDT)
- FFTK Opt Torsions: can not find channel named "" Almeida-Hern醤dez, Yasser, Dr. (Mon Sep 28 2020 - 05:45:50 CDT)
- FFTK Charge Opt Indoles Daniel Fellner (Sun Sep 27 2020 - 20:15:46 CDT)
- Script for Finding Point Group Symmetry of Molecule and Saving the Ideal coordinate Shivang Agarwal (Sat Sep 26 2020 - 00:31:16 CDT)
- FFTK Gaussian Input Generator - Bug? Daniel Fellner (Thu Sep 24 2020 - 20:20:36 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Thu Sep 24 2020 - 21:22:39 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Thu Sep 24 2020 - 23:08:50 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Fri Sep 25 2020 - 00:54:04 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Fri Sep 25 2020 - 06:39:47 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Fri Sep 25 2020 - 08:42:57 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Fri Sep 25 2020 - 16:30:18 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Axel Kohlmeyer (Fri Sep 25 2020 - 17:29:43 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Fri Sep 25 2020 - 17:37:45 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Thu Sep 24 2020 - 23:08:50 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Thu Sep 24 2020 - 21:22:39 CDT)
- How to make the trajectory file show the right bonds information in VMD 鍒樺織浼 (Thu Sep 24 2020 - 06:00:44 CDT)
- compile vmd for windows 10 omid gh (Tue Sep 22 2020 - 06:43:36 CDT)
- Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Sun Sep 20 2020 - 02:01:08 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Bassam Haddad (Sun Sep 20 2020 - 17:21:56 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Sun Sep 20 2020 - 20:17:39 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Axel Kohlmeyer (Sun Sep 20 2020 - 21:12:41 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Fri Sep 25 2020 - 18:51:17 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Peter Freddolino (Sat Sep 26 2020 - 21:29:29 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Sun Sep 20 2020 - 20:17:39 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Bassam Haddad (Sun Sep 20 2020 - 17:21:56 CDT)
- lammpstrj move out zoom alberto (Fri Sep 18 2020 - 08:53:22 CDT)
- 1.9.4_a43: chemical2vmd should use /tmp instead of /usr/tmp Francisco Ramos (Thu Sep 17 2020 - 06:33:30 CDT)
- 1.9.4_a43 mixes g++ and gcc during building and ignores LDFLAGS Francisco Ramos (Thu Sep 17 2020 - 06:26:43 CDT)
- Conformation assignment Navid Shervani-Tabar (Wed Sep 16 2020 - 14:01:30 CDT)
- 1.9.4_a43 parallel build issues with high -j Francisco Ramos (Wed Sep 16 2020 - 06:32:59 CDT)
- The Fe2+ parameter for NAMD simulation sunyeping (Tue Sep 15 2020 - 23:08:25 CDT)
- topo tool guess bond algorithm omid gh (Tue Sep 15 2020 - 13:39:34 CDT)
- Regarding arsorite files Basanta Acharya (Tue Sep 15 2020 - 06:59:12 CDT)
- Questions about using VMD to modify/alter nucleic acid structures CHIRANJEEV BURMA (Sun Sep 13 2020 - 12:01:20 CDT)
- Distance between multiple residues as heat plot Raman Preet Singh (Fri Sep 11 2020 - 06:21:21 CDT)
- hide bonds omid gh (Thu Sep 10 2020 - 02:45:18 CDT)
- VMD write pdb error Arthur Pereira da Fonseca (Wed Sep 09 2020 - 12:16:46 CDT)
- Tachyon freezing up Soumik Ghosh (Tue Sep 08 2020 - 16:02:18 CDT)
- Re: finding number of atoms within a radius Rogers Swai (Mon Sep 07 2020 - 04:56:37 CDT)
- finding number of atoms within a radius Saikat Pal (Mon Sep 07 2020 - 00:54:08 CDT)
- Do different version of NAMD would give different results? Krishna Vkm (Sun Sep 06 2020 - 14:38:26 CDT)
- Re: Do different version of NAMD would give different results? Josh Vermaas (Sun Sep 06 2020 - 17:00:53 CDT)
- Re: Do different version of NAMD would give different results? Peter Freddolino (Sun Sep 06 2020 - 19:00:34 CDT)
- Re: Do different version of NAMD would give different results? Krishna Vkm (Mon Sep 07 2020 - 04:47:50 CDT)
- Re: Do different version of NAMD would give different results? Peter Freddolino (Mon Sep 07 2020 - 07:31:01 CDT)
- Re: Do different version of NAMD would give different results? Krishna Vkm (Mon Sep 07 2020 - 08:04:08 CDT)
- Re: Do different version of NAMD would give different results? Krishna Vkm (Mon Sep 07 2020 - 04:56:11 CDT)
- Re: Do different version of NAMD would give different results? Peter Freddolino (Sun Sep 06 2020 - 19:00:34 CDT)
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- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 17 2020 - 22:23:30 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Sat Apr 25 2020 - 22:07:53 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 04:27:14 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 04:49:57 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Sun Apr 26 2020 - 14:33:34 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 14:49:37 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Sun Apr 26 2020 - 14:29:43 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 04:27:14 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Tue Apr 28 2020 - 11:29:38 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Fri Apr 17 2020 - 17:42:29 CDT)
- Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 17 2020 - 14:30:59 CDT)
- Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 07:17:02 CDT)
- Re: Counting the number of ligand molecules around my protein Adupa Vasista (Thu Apr 16 2020 - 08:24:27 CDT)
- Re: Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 09:22:00 CDT)
- Re: Counting the number of ligand molecules around my protein Adupa Vasista (Thu Apr 16 2020 - 09:44:21 CDT)
- Re: Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 10:27:16 CDT)
- Re: Counting the number of ligand molecules around my protein amin sagar (Thu Apr 16 2020 - 11:30:24 CDT)
- Re: Counting the number of ligand molecules around my protein Josh Vermaas (Thu Apr 16 2020 - 11:42:08 CDT)
- Re: Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 09:22:00 CDT)
- Re: Counting the number of ligand molecules around my protein Adupa Vasista (Thu Apr 16 2020 - 08:24:27 CDT)
- new cartoon representation resid selection Owen Vickery (Thu Apr 16 2020 - 05:04:27 CDT)
- ATOM LPH Francesco Pietra (Tue Apr 14 2020 - 12:57:04 CDT)
- fftk dihedrals error Andrej Tekel (Sun Apr 12 2020 - 03:32:05 CDT)
- Setting graphical representations from the command line Ross Williams (Fri Apr 10 2020 - 14:36:07 CDT)
- compiling VMD with cuda from source Oleksii Zdorevskyi (Fri Apr 10 2020 - 10:28:57 CDT)
- Re: compiling VMD with cuda from source Josh Vermaas (Fri Apr 10 2020 - 11:21:31 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon Apr 13 2020 - 04:28:00 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon Apr 13 2020 - 09:45:11 CDT)
- Re: compiling VMD with cuda from source John Stone (Mon Apr 13 2020 - 09:55:28 CDT)
- Re: compiling VMD with cuda from source Josh Vermaas (Mon Apr 20 2020 - 10:16:47 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon May 04 2020 - 09:11:25 CDT)
- Re: compiling VMD with cuda from source John Stone (Sat May 23 2020 - 02:30:44 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon Apr 13 2020 - 04:28:00 CDT)
- Re: compiling VMD with cuda from source Josh Vermaas (Fri Apr 10 2020 - 11:21:31 CDT)
- Re: namd-l: .coor and .vel output files not generated Josh Vermaas (Thu Apr 09 2020 - 22:04:49 CDT)
- VMD Compatible with Windows with 64-bit OS? Alex Hummels (Thu Apr 09 2020 - 15:44:24 CDT)
- Peptides with Linkage between N-Terminus and Side Chain Hendrik Schr枚der (Tue Apr 07 2020 - 13:17:07 CDT)
- (no subject) Marcos Verissimo Alves (Mon Apr 06 2020 - 12:04:07 CDT)
- Register some cell information in XYZ files FX (Mon Apr 06 2020 - 05:01:55 CDT)
- VMD Crash Czarny,Ryan (Fri Apr 03 2020 - 12:42:08 CDT)
- Segfault in VMD 1.9.4a38 in DrawMolItem::draw_volume_isosurface_points FX (Fri Apr 03 2020 - 06:18:01 CDT)
- Dangling Bonds Anthony Ruth (Thu Apr 02 2020 - 14:46:33 CDT)
- MDFF chirality restrain error - measure imprp: empty atom index Indrajit Deb (Wed Apr 01 2020 - 15:41:49 CDT)
- Problem compiling VMD 1.9.3 on macOS Catalina 10.15.3 Neda Rafieiolhosseini (Wed Apr 01 2020 - 03:23:13 CDT)
- VMD Energy analysis surya narayanan (Tue Mar 31 2020 - 16:45:40 CDT)
- Loading Chemical Component Dictionary File Crashes VMD Mortimer Hemmit (Mon Mar 30 2020 - 14:42:05 CDT)
- Memory Pool Size - can I optimize this? Chris Broomell (Mon Mar 30 2020 - 10:55:08 CDT)
- Re: Memory Pool Size - can I optimize this? Axel Kohlmeyer (Mon Mar 30 2020 - 12:12:32 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 12:31:27 CDT)
- Re: Memory Pool Size - can I optimize this? Axel Kohlmeyer (Mon Mar 30 2020 - 12:38:51 CDT)
- Re: Memory Pool Size - can I optimize this? Mortimer Hemmit (Mon Mar 30 2020 - 13:21:25 CDT)
- Re: Memory Pool Size - can I optimize this? John Stone (Mon Mar 30 2020 - 14:01:52 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 14:49:05 CDT)
- Re: Memory Pool Size - can I optimize this? Chris Broomell (Mon Mar 30 2020 - 15:58:00 CDT)
- Re: Memory Pool Size - can I optimize this? Giacomo Fiorin (Mon Mar 30 2020 - 16:51:00 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 18:26:00 CDT)
- Re: Memory Pool Size - can I optimize this? John Stone (Tue Mar 31 2020 - 14:46:29 CDT)
- Re: Memory Pool Size - can I optimize this? Chris Broomell (Tue Mar 31 2020 - 15:21:49 CDT)
- Re: Memory Pool Size - can I optimize this? Chris Broomell (Tue Mar 31 2020 - 15:27:29 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 12:31:27 CDT)
- Re: Memory Pool Size - can I optimize this? Axel Kohlmeyer (Mon Mar 30 2020 - 12:12:32 CDT)
- faced error in operating vmd Ram Krishna Adhikari (Fri Mar 27 2020 - 11:45:42 CDT)
- Lipids generated by VMD could not use "coordpdb" to read jiali wang (Thu Mar 26 2020 - 23:42:27 CDT)
- Visualizing coarse grained particles in VMD Borne, Vincent (Thu Mar 26 2020 - 12:07:21 CDT)
- rmsdtt 'batch mode' Philippe Bopp (Tue Mar 24 2020 - 08:14:22 CDT)
- CIF file reader FX (Sun Mar 22 2020 - 17:00:35 CDT)
- Re: CIF file reader Mortimer Hemmit (Mon Mar 23 2020 - 15:57:20 CDT)
- Re: CIF file reader John Stone (Tue Mar 24 2020 - 11:06:27 CDT)
- Re: CIF file reader FX (Sat Mar 28 2020 - 13:29:56 CDT)
- Re: CIF file reader Giacomo Fiorin (Sat Mar 28 2020 - 15:53:53 CDT)
- Re: CIF file reader FX (Sat Mar 28 2020 - 19:35:14 CDT)
- Re: CIF file reader John Stone (Sat Mar 28 2020 - 22:10:43 CDT)
- Re: CIF file reader Chris Neale (Sat Mar 28 2020 - 23:24:24 CDT)
- Re: CIF file reader Giacomo Fiorin (Sun Mar 29 2020 - 10:04:55 CDT)
- Re: CIF file reader John Stone (Wed Apr 01 2020 - 00:53:17 CDT)
- Re: CIF file reader Chris Neale (Wed Apr 01 2020 - 01:48:32 CDT)
- Re: CIF file reader FX (Sat Apr 04 2020 - 11:10:20 CDT)
- Re: CIF file reader FX (Wed Dec 01 2021 - 04:14:59 CST)
- Re: CIF file reader Axel Kohlmeyer (Wed Dec 01 2021 - 22:26:19 CST)
- Re: CIF file reader John Stone (Wed Dec 01 2021 - 23:38:29 CST)
- Re: CIF file reader Giacomo Fiorin (Thu Dec 02 2021 - 10:04:56 CST)
- Re: CIF file reader FX (Sat Mar 28 2020 - 13:29:56 CDT)
- Running Hydrogen Bonding Analysis with Script 鍒樺瀹 (Sun Mar 22 2020 - 02:04:34 CDT)
- Pair interaction calculation is not supported in CUDA version Adupa Vasista (Sun Mar 15 2020 - 12:10:53 CDT)
- Recommended Hardware Morgan Hoffman (Sat Mar 14 2020 - 19:56:09 CDT)
- Saving visualization state coordinates Peter Mawanga (Fri Mar 13 2020 - 11:00:16 CDT)
- Re: Qwikmd for QMMM simulations Joao Ribeiro (Thu Mar 12 2020 - 15:33:17 CDT)
- Re: Increasing cores in QwiKMD Joao Ribeiro (Thu Mar 12 2020 - 15:28:23 CDT)
- KS UIUC isn't accessible in new Firefox viktor drobot (Thu Mar 12 2020 - 09:47:11 CDT)
- Steered Molecular Dynamics for Metal-organic frameworks Achar, Sid (Mon Mar 09 2020 - 11:15:14 CDT)
- Qwikmd for QMMM simulations jing liang (Mon Mar 09 2020 - 10:37:34 CDT)
- Increasing cores in QwiKMD Naeem Mahmood Ashraf (Sun Mar 08 2020 - 06:22:04 CDT)
- Re: reseting namd library and uploading new topology file Joao Ribeiro (Fri Mar 06 2020 - 11:00:48 CST)
- reseting namd library and uploading new topology file soodabeh ghaffari (Thu Mar 05 2020 - 09:33:28 CST)
- Angular energy term Paula Mihaljevic-Juric (Thu Mar 05 2020 - 08:06:15 CST)
- Cionize Plugin - Output Options? Michael Robinson (Tue Mar 03 2020 - 23:57:34 CST)
- Rendering resolution Norouzi, Seyed (Mon Mar 02 2020 - 10:02:46 CST)
- Regarding adding extra strand in a beta barrel Shashank Ranjan Srivastava (Mon Mar 02 2020 - 03:59:13 CST)
- Minmax command Yogesh Sharma (Sun Mar 01 2020 - 08:38:20 CST)
- MSMS in VMD Mandar Kulkarni (Fri Feb 28 2020 - 07:59:54 CST)
- How to increase the number of core Naeem Mahmood Ashraf (Tue Feb 25 2020 - 05:47:53 CST)
- VMD doesn't handle AMBER Restart files correct viktor drobot (Sun Feb 23 2020 - 14:09:09 CST)
- Re: VMD doesn't handle AMBER Restart files correct Josh Vermaas (Sun Feb 23 2020 - 16:36:58 CST)
- Re: VMD doesn't handle AMBER Restart files correct viktor drobot (Tue Mar 03 2020 - 02:28:39 CST)
- Re: VMD doesn't handle AMBER Restart files correct viktor (Mon Oct 19 2020 - 16:02:03 CDT)
- Re: VMD doesn't handle AMBER Restart files correct John Stone (Tue Oct 20 2020 - 14:28:12 CDT)
- Re: VMD doesn't handle AMBER Restart files correct viktor (Tue Oct 20 2020 - 14:38:06 CDT)
- Re: VMD doesn't handle AMBER Restart files correct John Stone (Tue Oct 20 2020 - 15:31:19 CDT)
- Re: VMD doesn't handle AMBER Restart files correct John Stone (Sun Nov 01 2020 - 01:36:58 CDT)
- Re: VMD doesn't handle AMBER Restart files correct Josh Vermaas (Sun Feb 23 2020 - 16:36:58 CST)
- Build graphene sheets using VMD Amir Afshar (Thu Feb 20 2020 - 15:47:46 CST)
- FFTK: What is the correct charge calculation setup for carbonyl compounds David S谩ez (Wed Feb 19 2020 - 10:06:54 CST)
- vmd on raspberry pi Joe Konecny (Wed Feb 19 2020 - 09:39:31 CST)
- atomselect moveby: non-numeric in vector Adupa Vasista (Tue Feb 18 2020 - 09:32:22 CST)
- SDS molecules agglomeration. Mikhail Suyetin (Tue Feb 18 2020 - 03:02:38 CST)
- Keeping molecules intact when unwrapping Minjung Godfrey (Sat Feb 15 2020 - 17:39:49 CST)
- Check and remove the overlapping between atoms Amir Afshar (Sat Feb 15 2020 - 10:26:43 CST)
- VMD rendering colors Francesco Pietra (Thu Feb 13 2020 - 11:28:10 CST)
- Visulizing subunits Francesco Pietra (Tue Feb 11 2020 - 09:11:47 CST)
- Fwd: Visulizing subunits Francesco Pietra (Tue Feb 11 2020 - 10:10:07 CST)
- Re: Fwd: Visulizing subunits John Stone (Tue Feb 11 2020 - 10:41:58 CST)
- Re: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 02:21:55 CST)
- Fwd: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 02:31:20 CST)
- Fwd: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 03:54:49 CST)
- Re: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 04:19:01 CST)
- Re: Fwd: Visulizing subunits John Stone (Wed Feb 12 2020 - 09:52:36 CST)
- Re: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 11:14:57 CST)
- Re: Fwd: Visulizing subunits John Stone (Tue Feb 11 2020 - 10:41:58 CST)
- Fwd: Visulizing subunits Francesco Pietra (Tue Feb 11 2020 - 10:10:07 CST)
- voltool mask usage Matthieu (Fri Feb 07 2020 - 19:11:03 CST)
- Showing TkConsole on VMD Startup David Nicholson (Fri Feb 07 2020 - 12:44:08 CST)
- Generating Images for Several Structures Thyagarajan, Raghuram (Thu Feb 06 2020 - 14:08:34 CST)
- atomselect: cannot parse selection text: Viviane Corr锚a (Thu Feb 06 2020 - 11:13:25 CST)
- Re: atomselect: cannot parse selection text: John Stone (Thu Feb 06 2020 - 11:21:21 CST)
- Re: atomselect: cannot parse selection text: Viviane Corr锚a (Thu Feb 06 2020 - 11:31:06 CST)
- Re: atomselect: cannot parse selection text: John Stone (Thu Feb 06 2020 - 11:40:21 CST)
- Re: atomselect: cannot parse selection text: Viviane Corr锚a (Fri Feb 07 2020 - 03:37:47 CST)
- Re: atomselect: cannot parse selection text: Gianfranco Abrusci (Fri Feb 07 2020 - 05:40:54 CST)
- Re: atomselect: cannot parse selection text: Giacomo Fiorin (Fri Feb 07 2020 - 06:17:21 CST)
- Re: atomselect: cannot parse selection text: Viviane Corr锚a (Fri Feb 07 2020 - 07:31:56 CST)
- Re: atomselect: cannot parse selection text: Viviane Corr锚a (Thu Feb 06 2020 - 11:31:06 CST)
- Re: atomselect: cannot parse selection text: John Stone (Thu Feb 06 2020 - 11:21:21 CST)
- Gaussian16 support issue of ffTK Gawtak Kim (Wed Feb 05 2020 - 01:31:49 CST)
- Re: Gaussian16 support issue of ffTK David S谩ez (Wed Feb 05 2020 - 04:07:17 CST)
- Re: Gaussian16 support issue of ffTK giuseppe_at_ks.uiuc.edu (Wed Feb 05 2020 - 10:09:08 CST)
- Re: Gaussian16 support issue of ffTK David S谩ez (Wed Feb 05 2020 - 11:45:41 CST)
- Re: Gaussian16 support issue of ffTK Gawtak Kim (Wed Feb 05 2020 - 23:13:25 CST)
- Re: Gaussian16 support issue of ffTK JC Gumbart (Thu Feb 06 2020 - 19:58:52 CST)
- Re: Gaussian16 support issue of ffTK Gawtak Kim (Thu Feb 06 2020 - 22:19:58 CST)
- Re: Gaussian16 support issue of ffTK giuseppe_at_ks.uiuc.edu (Wed Feb 05 2020 - 10:09:08 CST)
- Re: Gaussian16 support issue of ffTK David S谩ez (Wed Feb 05 2020 - 04:07:17 CST)
- Tk startup error in X forwarding George Mogami (Tue Feb 04 2020 - 19:44:13 CST)
- Removing water molecules from nanotubes RAHUL SURESH (Mon Feb 03 2020 - 04:56:45 CST)
- AutoPSF error vecsub Francesco Pietra (Sat Feb 01 2020 - 14:59:02 CST)
- Moving a molecule, regarding RAHUL SURESH (Sat Feb 01 2020 - 09:28:53 CST)
- compilation of vmd from source on armv8 RK3399 processor Joey Gehring (Fri Jan 31 2020 - 22:54:40 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Sat Feb 01 2020 - 05:06:47 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Tue Feb 04 2020 - 03:01:29 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Fri Feb 07 2020 - 02:19:13 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Tue Feb 11 2020 - 06:33:11 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Sat Feb 01 2020 - 05:06:47 CST)
- Re: question about an error in QuickMD Joao Ribeiro (Wed Jan 29 2020 - 15:38:58 CST)
- question about an error in QuickMD soodabeh ghaffari (Wed Jan 29 2020 - 15:23:20 CST)
- radial atom distribution faride badalkhani (Mon Jan 27 2020 - 06:12:50 CST)
- FFTK dihedral parametrization David S谩ez (Fri Jan 24 2020 - 23:07:00 CST)
- Re: VMD 1.9.3 compiled from source does not work Oleksii Zdorevskyi (Fri Jan 24 2020 - 11:06:12 CST)
- replacing an existig residue with a novel residue LOKI LOKI (Fri Jan 24 2020 - 00:24:36 CST)
- could not read file no atoms found error Yogesh Sharma (Thu Jan 23 2020 - 02:56:10 CST)
- writing psf file without any coordinates Miro Astore (Wed Jan 22 2020 - 19:19:44 CST)
- VMD 1.9.3 compiled from source does not work Oleksii Zdorevskyi (Wed Jan 22 2020 - 15:24:58 CST)
- stuttering movies with snapshot Sebastian Reiter (Wed Jan 22 2020 - 12:03:31 CST)
- NAMD and VMD Armv8-A Joey Gehring (Tue Jan 21 2020 - 20:24:12 CST)
- Re: NAMD and VMD Armv8-A John Stone (Wed Jan 22 2020 - 12:38:31 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 13:45:43 CST)
- Re: NAMD and VMD Armv8-A John Stone (Wed Jan 22 2020 - 14:53:10 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 15:11:10 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 23:20:58 CST)
- Re: NAMD and VMD Armv8-A John Stone (Thu Jan 23 2020 - 10:35:25 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Thu Jan 23 2020 - 10:41:21 CST)
- Re: NAMD and VMD Armv8-A John Stone (Thu Jan 23 2020 - 10:50:49 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 29 2020 - 23:38:48 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 13:45:43 CST)
- Re: NAMD and VMD Armv8-A John Stone (Wed Jan 22 2020 - 12:38:31 CST)
- Restrain a molecule in movie Saikat Pal (Mon Jan 20 2020 - 08:56:30 CST)
- save contact map residue-residue distance plot SHAHEE ISLAM (Mon Jan 20 2020 - 03:36:22 CST)
- conversion of vmd generated (C36) bilayer to gromac format Yogesh Sharma (Sun Jan 19 2020 - 01:04:27 CST)
- orienting aquaporin in bilayer Yogesh Sharma (Sat Jan 18 2020 - 05:53:55 CST)
- Selection by Atom Number or Fragments Roshan Shrestha (Sat Jan 18 2020 - 02:55:47 CST)
- Workshop on Free Energy calculations in Muenster March 11-13 2020 Vlad Cojocaru (Fri Jan 17 2020 - 03:32:53 CST)
- pore visualization in throughout trajectory Yogesh Sharma (Thu Jan 16 2020 - 12:43:46 CST)
- settings for labels Francesco Pietra (Thu Jan 16 2020 - 09:41:16 CST)
- Using namdEnergy from an external python script Ackad, Edward (Wed Jan 15 2020 - 13:23:09 CST)
- adding modified residue into psf file from pdb Bennion, Brian (Mon Jan 13 2020 - 17:20:32 CST)
- Unable to view protein as cartoon or trace or tube Igor Leontyev (Mon Jan 13 2020 - 03:18:45 CST)
- How to take care of charges while attaching two monomers to form a polymer chain MUNUBARTHI KRANTHI KUMAR (Thu Jan 09 2020 - 05:10:08 CST)
- ignore gpu on startup Miro Astore (Thu Jan 09 2020 - 03:07:13 CST)
- PBC wrap deleting PBC boundaries during wrapping Christian Seitz (Mon Jan 06 2020 - 18:37:42 CST)
- Re: Fwd: RMSD pluging error Joao Ribeiro (Mon Jan 06 2020 - 09:20:56 CST)
- New OSX Requires 64-bit DMG Alex Saad-Falcon (Fri Jan 03 2020 - 11:42:11 CST)
- SMD specifying atom selection surya narayanan chandrasekaran (Wed Jan 01 2020 - 22:57:48 CST)
- RMSD pluging error Francesco Pietra (Mon Dec 30 2019 - 10:16:46 CST)
- Wrong net charge after patch Reinke.Patrick_at_mh-hannover.de (Sat Dec 21 2019 - 12:26:37 CST)
- Select Nucleic Acid sequence Dominique Mias-Lucquin (Fri Dec 20 2019 - 07:37:15 CST)
- RMSD per residue vs RMSF Ashraya Ravikumar (Wed Dec 18 2019 - 12:34:19 CST)
- amber generated netcdf trajectories Vlad Cojocaru (Wed Dec 18 2019 - 07:25:11 CST)
- Re: amber generated netcdf trajectories John Stone (Wed Dec 18 2019 - 10:19:26 CST)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Thu Dec 19 2019 - 03:46:08 CST)
- Re: amber generated netcdf trajectories Luthaf (Thu Dec 19 2019 - 07:09:50 CST)
- Re: amber generated netcdf trajectories John Stone (Thu Dec 19 2019 - 08:22:10 CST)
- Re: amber generated netcdf trajectories John Stone (Mon Jan 06 2020 - 14:20:06 CST)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Mon Jan 06 2020 - 14:45:40 CST)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Tue Apr 07 2020 - 13:11:39 CDT)
- Re: amber generated netcdf trajectories John Stone (Tue Apr 07 2020 - 13:23:14 CDT)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Thu Dec 19 2019 - 03:46:08 CST)
- Re: amber generated netcdf trajectories John Stone (Wed Dec 18 2019 - 10:19:26 CST)
- Installing VMD 1.9.3 on Linux - Missing Console Travis Meyer (Tue Dec 17 2019 - 15:25:27 CST)
- vmd draw material affects previous drawings Norouzi, Seyed (Mon Dec 16 2019 - 12:59:28 CST)
- Re: Charm++ fatal error: FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 NG301 (ATOMS 6407 6408) .. ERROR) Error connecting to localhost on port 3000 Joao Ribeiro (Mon Dec 16 2019 - 09:26:08 CST)
- Charm++ fatal error: FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 NG301 (ATOMS 6407 6408) .. ERROR) Error connecting to localhost on port 3000 Mubarak Alamri (Sat Dec 14 2019 - 18:30:51 CST)
- VMD 1.9.3 Linux installation Chang, Christopher (Fri Dec 13 2019 - 18:27:05 CST)
- Two questions regarding VMD 1.9.3 Windows NetCDF plugin Li, Zhen (Fri Dec 13 2019 - 16:17:30 CST)
- Re: Running RMSF script on compute canada Joao Ribeiro (Thu Dec 12 2019 - 16:18:58 CST)
- Running RMSF script on compute canada crockett c.h. (chc2g16) (Thu Dec 12 2019 - 12:43:26 CST)
- Name / permissions of Optix Diskcache Stefan Boresch (Wed Dec 11 2019 - 01:59:17 CST)
- Using RMSD for individual residues script (as seen in the NAMD tutorial) and bigdcd crockett c.h. (chc2g16) (Mon Dec 09 2019 - 17:28:46 CST)
- problem with installing OPTIX ray tracing giulia palermo (Mon Dec 09 2019 - 16:33:18 CST)
- OPTIX ray tracing option not showing up YOGESH NARKHEDE (Fri Dec 06 2019 - 13:55:37 CST)
- Files not written during OptiX ray tracing Bart Bruininks (Thu Dec 05 2019 - 10:56:54 CST)
- Loading large trajectories using multiple threads/direct calls? Bart Bruininks (Thu Dec 05 2019 - 05:54:10 CST)
- Re: Loading large trajectories using multiple threads/direct calls? John Stone (Thu Dec 05 2019 - 10:07:50 CST)
- VMD 1.9.4a38 build for macOS Catalina FX (Thu Dec 05 2019 - 04:46:46 CST)
- Re: VMD 1.9.4a38 build for macOS Catalina FX (Thu Dec 05 2019 - 07:58:46 CST)
- Re: VMD 1.9.4a38 build for macOS Catalina FX (Sat Dec 07 2019 - 07:32:21 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Sat Dec 07 2019 - 10:34:04 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sat Dec 07 2019 - 11:28:12 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Sat Dec 07 2019 - 19:20:24 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sun Dec 08 2019 - 04:31:13 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sun Dec 08 2019 - 05:10:39 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Mon Dec 09 2019 - 08:37:49 CST)
- FLTK 1.4.0 and high-DPI screens for VMD Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Mon Dec 09 2019 - 08:52:07 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sat Dec 07 2019 - 11:12:27 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina Gumbart, JC (Sat Dec 07 2019 - 16:29:06 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sun Dec 08 2019 - 07:14:24 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Sat Dec 07 2019 - 10:34:04 CST)
- Cross correlation Paula Mihaljevic-Juric (Tue Dec 03 2019 - 08:17:02 CST)
- Using bigdcd and .tcl scripts crockett c.h. (chc2g16) (Wed Nov 27 2019 - 09:23:39 CST)
- Getting list of arguments for TCL console Edward Ditler (Tue Nov 26 2019 - 02:23:58 CST)
- Dynamical network analysis-NetworkView-error Aliakbartehrani Zahra (Mon Nov 25 2019 - 04:56:22 CST)
- how to get VMD plugins for 1.9.3 Brian Guthrie (Sun Nov 24 2019 - 22:06:40 CST)
- Filetype for Kinetic Monte Carlo Anthony Ruth (Fri Nov 22 2019 - 09:07:31 CST)
- Overlap of volume maps in VMD Saumik Sen (Thu Nov 21 2019 - 05:39:16 CST)
- Coarse grain modelling problem Hasan Mahmud (Tue Nov 19 2019 - 14:26:30 CST)
- add new color index do VMD Nuno Cerqueira (Tue Nov 19 2019 - 10:54:52 CST)
- Protein is not read in VMD Normal Mode Wizard plugin Chetna Tyagi (Mon Nov 18 2019 - 07:53:02 CST)
- Problem in rendering CG bonds with VMD leila karami (Tue Nov 12 2019 - 15:18:08 CST)
- VMD download page down davidiniming . (Mon Nov 11 2019 - 00:24:16 CST)
- volmap to find free volume MD Simulation (Fri Nov 08 2019 - 14:57:35 CST)
- specifying path of add on program Dhiraj Srivastava (Fri Nov 08 2019 - 14:57:07 CST)
- Change color scale data range William Glass (Fri Nov 08 2019 - 04:32:03 CST)
- Re: namd-l: flexible fitting for helical structure Giacomo Fiorin (Tue Nov 05 2019 - 20:09:25 CST)
- Reg: RMSF Adupa Vasista (Tue Nov 05 2019 - 10:25:13 CST)
- Compilation and installation of VMD on Mac OS Catalina fabio trovato (Sun Nov 03 2019 - 05:36:37 CST)
- Molecule occupies the lower-bottom corner of the main window fabio trovato (Sat Nov 02 2019 - 11:03:40 CDT)
- visualising the bonds which indicated by "connect" order in pdb files Hoda Shirzad (Sat Nov 02 2019 - 00:43:18 CDT)
- VMD for Mac stopped working after updating to Catalina fabio trovato (Fri Nov 01 2019 - 20:43:09 CDT)
- VMD 1.9.3 Only Loads 2 Plugins Mortimer Hemmit (Thu Oct 31 2019 - 19:23:04 CDT)
- VMD for Catalina Krishna Suresh (Wed Oct 30 2019 - 17:35:22 CDT)
- Query on preferred encoder/settings for producing MPEG files GRANT KENNY (Sun Oct 27 2019 - 10:00:27 CDT)
- catdcd Henrik Hariman (Thu Oct 24 2019 - 22:34:12 CDT)
- Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Sarah Fowler (Wed Oct 23 2019 - 11:25:03 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 13:07:18 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 14:35:24 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 15:19:38 CDT)
- Re: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Axel Kohlmeyer (Wed Oct 23 2019 - 15:49:48 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 13:07:18 CDT)
- VMD RMSD Plot Selection 旯氙检灛 (Mon Oct 21 2019 - 10:53:46 CDT)
- Unit for RMSD cut-off in clustering tool Neena Susan Eappen (Fri Oct 18 2019 - 10:53:58 CDT)
- query on centering the pbc and cut the shell Santhosh Ranga (Thu Oct 17 2019 - 08:28:53 CDT)
- Periodic image Samuel Canner (Wed Oct 16 2019 - 23:17:13 CDT)
- SSrestraints Paula Mihaljevic-Juric (Wed Oct 16 2019 - 12:19:19 CDT)
- regarding inner volume of a micelle Snehasis Chatterjee (Tue Oct 15 2019 - 15:38:28 CDT)
- Joining fragments Raul Araya (Mon Oct 14 2019 - 07:51:30 CDT)
- Create Straight Peptide Molefacture Protein Builder Mortimer Hemmit (Sat Oct 12 2019 - 16:31:04 CDT)
- vmd 1.9.3 won't open in mac after catalina update this morning Evelyn Maizels (Tue Oct 08 2019 - 11:15:22 CDT)
- splitting pdb Stefano Guglielmo (Tue Oct 08 2019 - 10:30:02 CDT)
- Transform structure to Bakary N'tji Diallo (Tue Oct 08 2019 - 01:20:35 CDT)
- query on how to allow the protein to interact with the water molecules Santhosh Ranga (Sun Oct 06 2019 - 23:45:36 CDT)
- Question for Installing Plugin for VMD on Mac Oscar Bastidas (Sun Oct 06 2019 - 12:41:08 CDT)
- macOS Catalina Reza Esmaeeli (Sun Oct 06 2019 - 11:09:24 CDT)
- Local isosurface J茅r么me Claverie (Sun Oct 06 2019 - 04:32:47 CDT)
- NAMD .coor file to pdb, WRITE PDB ERROR. Amir Suhail (Thu Oct 03 2019 - 05:27:35 CDT)
- solvate protein in triclinic box Amir Suhail (Wed Oct 02 2019 - 10:37:26 CDT)
- lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 09:53:05 CDT)
- Re: lammps data file simulation box center and VMD origin Giacomo Fiorin (Wed Oct 02 2019 - 10:28:54 CDT)
- Re: lammps data file simulation box center and VMD origin Bassam Haddad (Wed Oct 02 2019 - 11:18:32 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 12:51:54 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 13:02:23 CDT)
- Re: lammps data file simulation box center and VMD origin Axel Kohlmeyer (Wed Oct 02 2019 - 15:07:54 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 16:11:13 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 12:51:54 CDT)
- (no subject) anupama sharma (Wed Oct 02 2019 - 07:53:27 CDT)
- GBIS parameters Paula Mihaljevic-Juric (Wed Oct 02 2019 - 07:24:17 CDT)
- network path analysis Naveen BK (Tue Oct 01 2019 - 04:52:52 CDT)
- VMD on multi-projector digital planetarium dome Peter van Heusden (Mon Sep 30 2019 - 07:53:15 CDT)
- MultiSeq: STAMP fails Aaron Oakley (Thu Sep 26 2019 - 20:40:31 CDT)
- Calculate CC in MDFF Mihaljevic-Juric Paula (Mme) (Wed Sep 25 2019 - 10:26:41 CDT)
- XenoView saved file (.car/.mdf file) Patrik Moln谩r (Tue Sep 24 2019 - 10:49:39 CDT)
- XenoView saved file (.car/.mdf file) Patrik Moln谩r (Tue Sep 24 2019 - 01:11:46 CDT)
- Decrease in CC during MDFF Paula Mihaljevic-Juric (Fri Sep 20 2019 - 04:45:38 CDT)
- AW: Re: namd-l: Is there someway to render protein picture without background color? Norman Geist (Thu Sep 19 2019 - 04:13:05 CDT)
- colormaps available for color by volume Thomas Sommerfeld (Thu Sep 19 2019 - 09:26:14 CDT)
- Parameterization strategy with fragmentation in fftk Per Larsson (Thu Sep 19 2019 - 06:14:37 CDT)
- RE: Parameterization strategy with fragmentation in fftk Vermaas, Joshua (Thu Sep 19 2019 - 11:50:39 CDT)
- Re: Parameterization strategy with fragmentation in fftk Per Larsson (Fri Sep 20 2019 - 04:31:50 CDT)
- Re: Parameterization strategy with fragmentation in fftk Gumbart, JC (Sun Sep 22 2019 - 17:04:28 CDT)
- Re: Parameterization strategy with fragmentation in fftk Per Larsson (Wed Sep 25 2019 - 02:21:09 CDT)
- RE: Parameterization strategy with fragmentation in fftk Vermaas, Joshua (Wed Sep 25 2019 - 09:38:35 CDT)
- Re: Parameterization strategy with fragmentation in fftk Per Larsson (Fri Sep 20 2019 - 04:31:50 CDT)
- RE: Parameterization strategy with fragmentation in fftk Vermaas, Joshua (Thu Sep 19 2019 - 11:50:39 CDT)
- exporting 3D model of a volume-based colored mesh Walter Rocchia (Wed Sep 18 2019 - 16:10:18 CDT)
- RE: exporting 3D model of a volume-based colored mesh Luc Boisvert (Wed Sep 18 2019 - 17:36:22 CDT)
- RE: exporting 3D model of a volume-based colored mesh Luciano Abriata (Thu Sep 19 2019 - 02:37:07 CDT)
- Re: exporting 3D model of a volume-based colored mesh John Stone (Thu Sep 19 2019 - 10:35:35 CDT)
- subopt/network analysis Tamas Hegedus (Tue Sep 17 2019 - 04:31:40 CDT)
- correct "origin" in VMD Michael Morgan (Mon Sep 16 2019 - 16:44:47 CDT)
- VMD segmentation fault (core dumped) Kliuchnikov, Evgenii (Mon Sep 16 2019 - 12:53:42 CDT)
- For calculating the number of osmolytes molecules Ashma Khan (Mon Sep 16 2019 - 04:51:51 CDT)
- VMD not reading plain mdcrd trajectories viktor drobot (Sun Sep 15 2019 - 08:43:38 CDT)
- VMD not reading plain mdcrd trajectories viktor drobot (Fri Sep 20 2019 - 09:41:40 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Fri Sep 20 2019 - 09:50:02 CDT)
- Re: VMD not reading plain mdcrd trajectories viktor drobot (Fri Sep 20 2019 - 10:51:17 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Wed Sep 25 2019 - 01:32:23 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Wed Sep 25 2019 - 08:45:14 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Wed Sep 25 2019 - 10:14:31 CDT)
- Re: VMD not reading plain mdcrd trajectories viktor drobot (Wed Sep 25 2019 - 10:16:20 CDT)
- Re: VMD not reading plain mdcrd trajectories Axel Kohlmeyer (Fri Sep 20 2019 - 10:26:47 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Fri Sep 20 2019 - 09:50:02 CDT)
- VMD not reading plain mdcrd trajectories viktor drobot (Fri Sep 20 2019 - 09:41:40 CDT)
- Is there someway to render protein picture without background color? jiali wang (Sat Sep 14 2019 - 20:25:54 CDT)
- Change of colour for bond distance Suchetana Gupta (Fri Sep 13 2019 - 00:26:30 CDT)
- Normal mode analysis Kliuchnikov, Evgenii (Thu Sep 12 2019 - 18:11:16 CDT)
- generation of amber topology of Carbon nanotube Shilpa Gupta (Mon Sep 09 2019 - 07:08:58 CDT)
- Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Mon Sep 09 2019 - 02:17:54 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Mon Sep 09 2019 - 13:34:33 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Mon Sep 09 2019 - 20:08:27 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Tue Sep 10 2019 - 16:05:34 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Tue Sep 17 2019 - 11:01:25 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Wed Sep 18 2019 - 20:23:54 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Mon Sep 09 2019 - 20:08:27 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Mon Sep 09 2019 - 13:34:33 CDT)
- perform hbond analysis in the terminal Saikat Pal (Sat Sep 07 2019 - 02:30:43 CDT)
- Querying Residue Numbers that are Alphanumeric Wallace Chan (Fri Sep 06 2019 - 12:56:35 CDT)
- Tcl foreach/for loop error Alex Hummels (Thu Sep 05 2019 - 16:28:51 CDT)
- VMD 1.9.4 crash on MacOS Adam Mat臎j (Thu Sep 05 2019 - 02:55:20 CDT)
- planned support for Catalina? Gumbart, JC (Thu Aug 29 2019 - 14:53:05 CDT)
- << Different values of RMSD >> I. Camps (Thu Aug 29 2019 - 12:39:09 CDT)
- ssrestraints errors ridaka jannat (Wed Aug 28 2019 - 12:01:28 CDT)
- << Loading trajectory file in Windows fails >> I. Camps (Wed Aug 28 2019 - 07:39:34 CDT)
- clustering tool is not working Saikat Pal (Tue Aug 27 2019 - 00:38:21 CDT)
- Postdoctoral researcher position in computational virology. Juan R. Perilla (Mon Aug 26 2019 - 10:32:44 CDT)
- Acetylation AutoPSF Reinke.Patrick_at_mh-hannover.de (Mon Aug 26 2019 - 10:13:01 CDT)
- Keeping Dotted Structure when Rendering using PovRay Nick Palmer (Fri Aug 23 2019 - 10:25:31 CDT)
- How the suboptimal path length is computed in NetworkView plugin Yuchen Yuan (Tue Aug 20 2019 - 20:35:51 CDT)
- Reduce size/number of nodes/image quality while rendering VRML 2.0 file Wei-Lan Lin (Tue Aug 20 2019 - 17:10:13 CDT)
- NetCDF (Amber MMTK) plugin Weatherby,Gerard (Tue Aug 20 2019 - 12:41:34 CDT)
- Mailing list for Postdoctoral opportunities in Simulations Peter Mawanga (Tue Aug 20 2019 - 01:24:38 CDT)
- Re: Extract Most Frequently found structure Joao Ribeiro (Fri Aug 16 2019 - 08:11:56 CDT)
- Extract Most Frequently found structure Neena Susan Eappen (Thu Aug 15 2019 - 22:31:08 CDT)
- Atoms on top of each in wrapped trajectory Alex Hummels (Thu Aug 15 2019 - 14:42:02 CDT)
- How the Within Command Works Alex Hummels (Thu Aug 08 2019 - 09:28:30 CDT)
- Problem in Network analysis PRITI ROY (Sun Aug 04 2019 - 01:51:30 CDT)
- wrapping with bigdcd Monika Kumari (Wed Jul 31 2019 - 00:22:34 CDT)
- Bond Length and Bond Angle as a Function of Steps ehsan shahini (Tue Jul 30 2019 - 02:29:41 CDT)
- Local isosurface J茅r么me Claverie (Sat Jul 27 2019 - 13:02:14 CDT)
- Scripting with volumes Bassam Haddad (Thu Jul 25 2019 - 16:45:32 CDT)
- Fwd: Charu Sharma (JRF) (Wed Jul 24 2019 - 03:03:06 CDT)
- sub : considering waters with in 5A of solute Lara rajam (Tue Jul 23 2019 - 10:10:42 CDT)
- Periodic boundary conditions for multimeric systems Maryam X (Mon Jul 22 2019 - 07:38:47 CDT)
- followup: atomselect one liner Philippe Bopp (Sat Jul 20 2019 - 04:09:27 CDT)
- atomselect one liner Philippe Bopp (Sat Jul 20 2019 - 02:22:12 CDT)
- Creation of Thin Amorphous SiO2 using Inorganic Builder-VMD Sina Zarepakzad (Fri Jul 19 2019 - 07:32:39 CDT)
- Tcl Almira Ovagimyan (Thu Jul 18 2019 - 07:36:15 CDT)
- VMD 1.9.4a31 segmentation fault on OpenSUSE 15.1 Steven Wang (Tue Jul 16 2019 - 14:43:55 CDT)
- Re: Generate QM Region Topology in QwikMD for metal ions to perform QM/MM Joao Ribeiro (Tue Jul 16 2019 - 09:29:31 CDT)
- Generate QM Region Topology in QwikMD for metal ions to perform QM/MM Umut Gerlevik (Tue Jul 16 2019 - 05:56:15 CDT)
- (no subject) Nirmitee Mulgaonkar (Sat Jul 13 2019 - 21:45:50 CDT)
- Re: vmd moveby command inside loop Joao Ribeiro (Thu Jul 11 2019 - 09:23:32 CDT)
- vmd moveby command inside loop surya narayanan chandrasekaran (Thu Jul 11 2019 - 05:36:07 CDT)
- New version of Molefacture -small molecule modeling tool- posted Joao Ribeiro (Wed Jul 10 2019 - 16:59:50 CDT)
- New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Wed Jul 10 2019 - 15:29:12 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Sun Jul 14 2019 - 20:10:43 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Tue Jul 16 2019 - 17:18:16 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Tue Jul 16 2019 - 17:28:15 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Michael Gecht (Fri Jul 19 2019 - 04:11:33 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Tue Jul 23 2019 - 23:28:39 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Wed Jul 17 2019 - 15:43:42 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Fri Dec 13 2019 - 00:09:20 CST)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Tue Jul 16 2019 - 17:18:16 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Sun Jul 14 2019 - 20:10:43 CDT)
- Fwd: FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Adupa Vasista (Wed Jul 10 2019 - 10:32:16 CDT)
- Re: FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Joao Ribeiro (Wed Jul 10 2019 - 09:49:09 CDT)
- FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT 榛勬磱 (Wed Jul 10 2019 - 09:03:44 CDT)
- Re: How to incorporate new probe molecules in DruGui? Joao Ribeiro (Tue Jul 09 2019 - 09:07:48 CDT)
- How to incorporate new probe molecules in DruGui? Nirmitee Mulgaonkar (Sat Jul 06 2019 - 17:17:45 CDT)
- AutoPSF charge generation Adupa Vasista (Sat Jul 06 2019 - 04:28:55 CDT)
- Getting the topology,PSF files Adupa Vasista (Thu Jul 04 2019 - 14:54:25 CDT)
- Rotating a molecule to make it parallel to another bond Monika Madhavi (Wed Jul 03 2019 - 12:10:22 CDT)
- Sub: making a trajectory with frames having different number of water molecules. Lara rajam (Mon Jul 01 2019 - 19:44:18 CDT)
- using martini forcefields for DNA in NAMD Parth Chaturvedi (Mon Jul 01 2019 - 18:34:51 CDT)
- failure of charge optimization by fftk WT Ren (Sun Jun 30 2019 - 09:42:13 CDT)
- Change Label Font Gajanan Kanagalingam (Sun Jun 30 2019 - 04:14:13 CDT)
- Adaptive real time selection and coloring in default display Bart Bruininks (Thu Jun 27 2019 - 10:05:11 CDT)
- Increasing the number of bonds per atom Wasim Abdul (Thu Jun 27 2019 - 06:54:17 CDT)
- Re: Increasing the number of bonds per atom Axel Kohlmeyer (Thu Jun 27 2019 - 07:31:22 CDT)
- Re: Increasing the number of bonds per atom John Stone (Thu Jun 27 2019 - 09:09:23 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Thu Jun 27 2019 - 09:10:46 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Fri Jun 28 2019 - 01:42:49 CDT)
- RE: Increasing the number of bonds per atom Vermaas, Joshua (Fri Jun 28 2019 - 08:13:20 CDT)
- Re: Increasing the number of bonds per atom John Stone (Fri Jun 28 2019 - 11:20:52 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Fri Jun 28 2019 - 13:47:04 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Wed Jul 03 2019 - 01:09:12 CDT)
- Re: Increasing the number of bonds per atom John Stone (Wed Jul 10 2019 - 15:54:03 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Fri Jul 12 2019 - 04:38:31 CDT)
- Re: Increasing the number of bonds per atom John Stone (Thu Jun 27 2019 - 09:09:23 CDT)
- Re: Increasing the number of bonds per atom Axel Kohlmeyer (Thu Jun 27 2019 - 07:31:22 CDT)
- atoms within a radius cutoff and a percentage cutoff of a trajectory Amendra Fernando Hewa Dewage (Fri Jun 21 2019 - 15:27:01 CDT)
- Error compiling 1.9.3 with CUDA Weatherby,Gerard (Thu Jun 20 2019 - 12:54:53 CDT)
- Immediate postdoc opening in Bio-molecular simulation, University of Alberta, Canada Marawan Hussien (Wed Jun 19 2019 - 19:16:26 CDT)
- NAMD Developer Meeting 2019 giuseppe_at_ks.uiuc.edu (Wed Jun 19 2019 - 16:59:58 CDT)
- basal spacing Hasnain Shabbir (Wed Jun 19 2019 - 13:25:20 CDT)
- Re: Error during minimizazion - Number of atoms in fixed atoms PDB... Joao Ribeiro (Tue Jun 18 2019 - 09:38:50 CDT)
- Error during minimizazion - Number of atoms in fixed atoms PDB... Alessandro Ruda (Mon Jun 17 2019 - 17:12:26 CDT)
- How to get box information from file.dcd. Parviz Seifpanahi Shabane (Mon Jun 17 2019 - 14:16:45 CDT)
- Merging two proteins John H (Mon Jun 17 2019 - 10:56:24 CDT)
- How to calculate water density. Parviz Seifpanahi Shabane (Mon Jun 17 2019 - 09:34:57 CDT)
- catdcd error Roshan Shrestha (Sat Jun 15 2019 - 04:02:46 CDT)
- reg: PHI HEOM tool surya narayanan chandrasekaran (Tue Jun 11 2019 - 05:12:30 CDT)
- Visualization State Issue With Secondary Structure Elizabeth Wait (Thu Jun 06 2019 - 15:46:40 CDT)
- Re: namd-l: vecsub:two vectors don't have the same size Joao Ribeiro (Thu Jun 06 2019 - 09:21:58 CDT)
- VMD on Mac OS Catalina (10.15 beta): Bad CPU type in executable Tai Bui (Thu Jun 06 2019 - 08:17:58 CDT)
- Request for help in command line in VMD priyaranjini ranju (Thu Jun 06 2019 - 04:30:37 CDT)
- SASA calculation for sidechains of my peptide residues Daeun Noh (Wed Jun 05 2019 - 17:44:20 CDT)
- User-defined coloring Mustafa Tekpinar (Wed Jun 05 2019 - 10:55:24 CDT)
- Problem with visualization of structure in amber coordinate format sunyeping (Mon Jun 03 2019 - 23:32:30 CDT)
- VMD alpha builds J茅r么me H茅nin (Mon Jun 03 2019 - 09:01:03 CDT)
- how to draw boxes with semi-transparent sides Abolfazl Musavi (Sat Jun 01 2019 - 21:58:10 CDT)
- Re: how to draw boxes with semi-transparent sides Dallas Warren (Sun Jun 02 2019 - 17:57:21 CDT)
- Re: how to draw boxes with semi-transparent sides Strahs, Dr. Daniel Bernard (Sun Jun 02 2019 - 19:13:53 CDT)
- Re: how to draw boxes with semi-transparent sides Axel Kohlmeyer (Sun Jun 02 2019 - 20:21:05 CDT)
- Problem While Visualising the Trajectory File from LAMMPS Simulation LIGESH B (Sat Jun 01 2019 - 06:38:18 CDT)
- parameter file for dUTP sunyeping (Thu May 30 2019 - 08:03:03 CDT)
- PDB manipulation options Roshan Shrestha (Wed May 29 2019 - 12:41:37 CDT)
- Re: Re: psfgen problems of many segment complex Joao Ribeiro (Tue May 28 2019 - 08:45:26 CDT)
- Get number of fragments MD Simulation (Mon May 27 2019 - 05:57:25 CDT)
- Check if the lysine residues are deprotonated or not inside the membrane ? Roshan Shrestha (Fri May 24 2019 - 08:55:40 CDT)
- VMD installation Saikat Pal (Fri May 24 2019 - 06:55:34 CDT)
- psfgen problems of many segment complex Takeru KAMEDA (Fri May 24 2019 - 00:57:38 CDT)
- Re: psfgen problems of many segment complex Peter Freddolino (Fri May 24 2019 - 07:22:38 CDT)
- RE: psfgen problems of many segment complex Vermaas, Joshua (Fri May 24 2019 - 07:52:55 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Fri May 24 2019 - 10:14:43 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Mon May 27 2019 - 03:19:13 CDT)
- Re: psfgen problems of many segment complex Peter Freddolino (Mon May 27 2019 - 08:47:37 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Tue May 28 2019 - 08:28:06 CDT)
- Re: Re: psfgen problems of many segment complex Peter Freddolino (Tue May 28 2019 - 10:05:05 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Fri May 24 2019 - 10:14:43 CDT)
- Cionize plugin Paula Mihaljevic-Juric (Tue May 21 2019 - 09:46:53 CDT)
- CG Martini File for Cholesterol Alexander Adams (Mon May 20 2019 - 10:45:50 CDT)
- volutil option xiaoyu qing (Sun May 19 2019 - 03:46:15 CDT)
- regarding cionize san kumar (Fri May 17 2019 - 09:56:50 CDT)
- Tachyon-OptiX Rendering User Defined Clipping Planes? Dallas Warren (Wed May 15 2019 - 18:22:26 CDT)
- Partial rendering of periodic cells` Nick Palmer (Wed May 15 2019 - 16:14:07 CDT)
- Alpha to beta conversion Kalyanashis Jana (Wed May 15 2019 - 04:17:08 CDT)
- Defining a layer for a micelle Nick Palmer (Mon May 13 2019 - 11:26:22 CDT)
- Re: Defining a layer for a micelle Alec Zander (Mon May 13 2019 - 12:12:42 CDT)
- RE: Defining a layer for a micelle Vermaas, Joshua (Mon May 13 2019 - 13:35:32 CDT)
- Re: Defining a layer for a micelle Nick Palmer (Tue May 14 2019 - 21:33:36 CDT)
- Re: Defining a layer for a micelle Alec Zander (Wed May 15 2019 - 08:22:50 CDT)
- RE: Defining a layer for a micelle Vermaas, Joshua (Wed May 15 2019 - 08:25:45 CDT)
- Re: Defining a layer for a micelle Giacomo Fiorin (Wed May 15 2019 - 08:47:13 CDT)
- RE: Defining a layer for a micelle Vermaas, Joshua (Mon May 13 2019 - 13:35:32 CDT)
- AW: Defining a layer for a micelle Norman Geist (Tue May 14 2019 - 01:17:08 CDT)
- Re: Defining a layer for a micelle Nick Palmer (Wed May 15 2019 - 11:08:33 CDT)
- Re: Defining a layer for a micelle Alec Zander (Mon May 13 2019 - 12:12:42 CDT)
- VMD process Windows Endri Kastrati (Fri May 10 2019 - 00:01:22 CDT)
- How to add ions to a system with non-water solvents sting (Thu May 09 2019 - 21:22:55 CDT)
- measure rmsd with non-serial atom ordering between two selections Patrick Charchar (Tue May 07 2019 - 17:54:41 CDT)
- Issues with Tcl script for MD Prep Matt Veter (Tue May 07 2019 - 13:28:49 CDT)
- Find Hydrogens not participating in H-bond Neena Susan Eappen (Wed May 01 2019 - 17:11:11 CDT)
- Amide peptide capping group lost in VMD Neena Susan Eappen (Wed May 01 2019 - 16:54:29 CDT)
- Autopsfgen verbose error output? Francesco Pietra (Wed May 01 2019 - 13:24:31 CDT)
- regarding capsid inner volume san kumar (Tue Apr 30 2019 - 16:24:23 CDT)
- MD Simulations with GROMACS/NAMD/AMBER/VMD: Seasonal School in Stockholm 10-13 June Joao Ribeiro (Tue Apr 30 2019 - 09:43:46 CDT)
- (no subject) Steven De Volder (Mon Apr 29 2019 - 08:57:40 CDT)
- Some bugs and questions about the 1.9.4a29 version Bart Bruininks (Mon Apr 29 2019 - 03:57:59 CDT)
- Query regarding H-bond Saikat Pal (Sat Apr 27 2019 - 08:06:19 CDT)
- Postdoc Position at Penn in Chromosome Modeling Hemant Kumar (Fri Apr 26 2019 - 13:41:25 CDT)
- obj/mtl and isosurface as wireframe, possibly a small bug Luciano Abriata (Fri Apr 26 2019 - 02:54:40 CDT)
- Re: Bugs and Questions Joao Ribeiro (Thu Apr 25 2019 - 13:39:32 CDT)
- Re: QwikMD Glycoside Hydrolase Tutorial step 2 Joao Ribeiro (Thu Apr 25 2019 - 13:31:40 CDT)
- QwikMD Glycoside Hydrolase Tutorial step 2 Andreas Kukol (Thu Apr 25 2019 - 10:35:16 CDT)
- Questions and Bugs McGuire, Kelly (Thu Apr 25 2019 - 10:22:33 CDT)
- Bugs and Questions McGuire, Kelly (Thu Apr 25 2019 - 10:14:02 CDT)
- VMD window doesn't show up 雽頃欖洂 頇旐暀瓿淀暀瓿 (Thu Apr 25 2019 - 06:44:52 CDT)
- Track H-bonds at a site in a trajectory Neena Susan Eappen (Wed Apr 24 2019 - 12:44:39 CDT)
- How to transfer Anton trajectory to AMBER trajectory. Parviz Seifpanahi Shabane (Mon Apr 22 2019 - 09:29:14 CDT)
- Umbrella Sampling in PLUMED + NAMD Mikhail Suyetin (Mon Apr 22 2019 - 01:33:04 CDT)
- OpenGL acceleration from eGPU? Ross Gunderson (Thu Apr 18 2019 - 10:08:22 CDT)
- OBJ rendering with multiple colors and transparency Luc Boisvert (Wed Apr 17 2019 - 17:41:52 CDT)
- Re: Problem with QwikMD automatic NTER patch Joao Ribeiro (Wed Apr 17 2019 - 16:59:41 CDT)
- Problem with QwikMD automatic NTER patch Pablo Alfonso Madero Ayala (Wed Apr 17 2019 - 16:45:37 CDT)
- Rasterized default display rendering vs ray-tracing (interactive) Bart Bruininks (Wed Apr 17 2019 - 06:02:46 CDT)
- SASA calculation with periodic images Projesh Roy (Tue Apr 16 2019 - 05:04:49 CDT)
- Re: Query regarding qwrap J茅r么me H茅nin (Tue Apr 16 2019 - 02:57:13 CDT)
- Question Cristian Bogaciu (Fri Apr 12 2019 - 20:44:32 CDT)
- Regarding PBC unwrap Angana Ray (Fri Apr 12 2019 - 17:44:45 CDT)
- Tcl Almira Ovagimyan (Thu Apr 11 2019 - 15:20:42 CDT)
- File Format McGuire, Kelly (Wed Apr 10 2019 - 15:15:17 CDT)
- Re: Creating and using a tk button Joao Ribeiro (Mon Apr 08 2019 - 07:25:50 CDT)
- Creating and using a tk button Ali Morshedi (Sun Apr 07 2019 - 03:34:39 CDT)
- Tk-console Anjali Patel (Sat Apr 06 2019 - 03:45:37 CDT)
- Tk-Console Anjali Patel (Sat Apr 06 2019 - 02:54:34 CDT)
- is VMD portable? Michael Morgan (Wed Apr 03 2019 - 21:04:17 CDT)
- calculate the percentage of beta-sheet and alpha helix with time evolution Saikat Pal (Wed Apr 03 2019 - 00:24:11 CDT)
- BOND distance Aashish Bhatt (Sat Mar 30 2019 - 06:23:35 CDT)
- Topotools - silicon (110) creation Sina Zarepakzad (Thu Mar 28 2019 - 11:18:43 CDT)
- Re: FFTK Water Interaction mariano spivak (Thu Mar 28 2019 - 09:25:13 CDT)
- FFTK Water Interaction McGuire, Kelly (Wed Mar 27 2019 - 23:57:34 CDT)
- Re: VMD on a WINDOWS 7 64-bit computer Stefan Boresch (Wed Mar 27 2019 - 03:01:06 CDT)
- Re: Visualization Question Joao Ribeiro (Tue Mar 26 2019 - 08:16:02 CDT)
- VMD psfgen lonepair handling Aravinda Munasinghe (Mon Mar 25 2019 - 21:37:32 CDT)
- Visualization Question McGuire, Kelly (Mon Mar 25 2019 - 19:05:45 CDT)
- Re: Idle script error Joao Ribeiro (Mon Mar 25 2019 - 09:11:52 CDT)
- Idle script error Simon Wheeler (Mon Mar 25 2019 - 06:07:58 CDT)
- Measre dihedral angle of a certain type M K (Mon Mar 25 2019 - 00:42:37 CDT)
- Re: ORCA Plugin Ernesto Aleksei Delgado Hurtado (Sun Mar 24 2019 - 11:54:16 CDT)
- ORCA Plugin McGuire, Kelly (Sat Mar 23 2019 - 23:03:50 CDT)
- VMD OrcaPlugin Bug McGuire, Kelly (Thu Mar 21 2019 - 13:49:29 CDT)
- Fwd: hydrogen bond calculations Sasthi Charan Mandal (Sun Mar 17 2019 - 03:58:09 CDT)
- hydrogen bond calculations Sasthi Charan Mandal (Sun Mar 17 2019 - 02:07:16 CDT)
- 32bit memory problems on Mac OS Tom Bartl (Sat Mar 16 2019 - 14:10:48 CDT)
- Source code for ringsize? MD Simulation (Fri Mar 15 2019 - 14:30:07 CDT)
- ORCA Orbital Bug McGuire, Kelly (Fri Mar 15 2019 - 11:02:30 CDT)
- Re: ORCA Orbital Bug John Stone (Sat Mar 16 2019 - 01:13:06 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Sat Mar 16 2019 - 18:34:51 CDT)
- Re: ORCA Orbital Bug John Stone (Sun Mar 17 2019 - 19:19:48 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Sun Mar 17 2019 - 19:58:46 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Tue Mar 19 2019 - 12:31:43 CDT)
- Re: ORCA Orbital Bug John Stone (Tue Mar 19 2019 - 12:39:43 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Tue Mar 19 2019 - 12:40:34 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Tue Mar 19 2019 - 12:43:30 CDT)
- Re: ORCA Orbital Bug John Stone (Tue Mar 19 2019 - 13:04:58 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Sat Mar 16 2019 - 18:34:51 CDT)
- Re: ORCA Orbital Bug John Stone (Sat Mar 16 2019 - 01:13:06 CDT)
- Fixing coordinates for visualization Eugenio Gil (Thu Mar 14 2019 - 08:22:14 CDT)
- How to fix the position of the lipid bilayer in the trajectories Rabeta Yeasmin (Wed Mar 13 2019 - 14:38:00 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Giacomo Fiorin (Wed Mar 13 2019 - 15:34:12 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Axel Kohlmeyer (Wed Mar 13 2019 - 16:18:12 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories J茅r么me H茅nin (Thu Mar 14 2019 - 07:52:07 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Giacomo Fiorin (Thu Mar 14 2019 - 09:46:31 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Rabeta Yeasmin (Thu Mar 14 2019 - 12:04:50 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories J茅r么me H茅nin (Thu Mar 14 2019 - 12:20:05 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Rabeta Yeasmin (Thu Mar 14 2019 - 12:33:01 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories J茅r么me H茅nin (Thu Mar 14 2019 - 12:37:58 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Axel Kohlmeyer (Wed Mar 13 2019 - 16:18:12 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Giacomo Fiorin (Wed Mar 13 2019 - 15:34:12 CDT)
- PSF File Hasnain Shabbir (Wed Mar 13 2019 - 02:12:13 CDT)
- Research Programmer for VMD/NAMD at UIUC Jo茫o Ribeiro (Tue Mar 12 2019 - 13:20:10 CDT)
- VMD Multiprocessing McGuire, Kelly (Sun Mar 10 2019 - 17:55:43 CDT)
- read vector lammps with VMD alberto (Fri Mar 08 2019 - 04:14:34 CST)
- VMD Text Mode McGuire, Kelly (Thu Mar 07 2019 - 18:02:28 CST)
- center of mass 4 rdf VMD alberto (Thu Mar 07 2019 - 09:42:48 CST)
- qwikmd can't load pdb file, locate "P:/" drive Brittany Lott (Mon Mar 04 2019 - 20:24:54 CST)
- Clipping plane redering issues Korey R (Mon Mar 04 2019 - 10:46:00 CST)
- Windows build newer than 1.9.3 Stefan Boresch (Mon Mar 04 2019 - 01:54:58 CST)
- FFTK Possible Bug McGuire, Kelly (Sat Mar 02 2019 - 20:28:38 CST)
- BIMac2019 Dusan Racko (Thu Feb 28 2019 - 08:39:19 CST)
- Changing isosurface wireframe thickness when rendering with Tachyon Matthieu Benoit (Wed Feb 27 2019 - 23:44:27 CST)
- GolP-CHARMM Mikhail Suyetin (Wed Feb 27 2019 - 10:24:21 CST)
- Centering an atom over the length of a trajectory Nick Palmer (Tue Feb 26 2019 - 15:11:55 CST)
- RDF witth center of mass as selection alberto (Tue Feb 26 2019 - 10:08:03 CST)
- RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Mon Feb 25 2019 - 20:40:16 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... Casalino, Lorenzo (Tue Feb 26 2019 - 13:02:03 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Tue Mar 05 2019 - 10:17:50 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Tue Mar 05 2019 - 22:00:23 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Mon Mar 11 2019 - 15:35:39 CDT)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Sat Mar 16 2019 - 01:11:39 CDT)
- Updated RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Fri Mar 15 2019 - 16:31:14 CDT)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... Dallas Warren (Mon Apr 29 2019 - 18:52:15 CDT)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... Casalino, Lorenzo (Tue Feb 26 2019 - 13:02:03 CST)
- Incorrect charge in VMD from PSF? Udaya Dahal (Mon Feb 25 2019 - 11:57:47 CST)
- Calculate the bond and angle energy of a glucosidic linkage using NAMD Energy plugin Ern Ong (Mon Feb 25 2019 - 04:39:21 CST)
- TCL For Loop Problem McGuire, Kelly (Sun Feb 24 2019 - 21:47:16 CST)
- Possible Bug McGuire, Kelly (Sat Feb 23 2019 - 00:32:30 CST)
- Query regarding contact map Saikat Pal (Sat Feb 23 2019 - 00:18:40 CST)
- Re: [EXTERNAL] RE: pbctools installation error Tripathi, Ashutosh (Fri Feb 22 2019 - 16:10:30 CST)
- pbctools installation error Tripathi, Ashutosh (Fri Feb 22 2019 - 14:27:40 CST)
- VMD RTX hardware accelerated ray tracing update! John Stone (Thu Feb 21 2019 - 23:24:40 CST)
- extracting 1-D data from a volumetric file Bassam Haddad (Thu Feb 21 2019 - 12:47:04 CST)
- Query regarding contact map Saikat Pal (Wed Feb 20 2019 - 22:56:10 CST)
- TIP4P Water box 旯氙检灛 (Tue Feb 19 2019 - 19:51:03 CST)
- Move volumetric data with their associated PDB Matthieu Benoit (Tue Feb 19 2019 - 12:21:37 CST)
- Error: invalid command name "voltool" Montserrat Fabrega Ferrer (Tue Feb 19 2019 - 10:40:59 CST)
- 1CA2 autoionization 旯氙检灛 (Tue Feb 19 2019 - 08:44:29 CST)
- Difference in ParseFEP result with versions 1.9.2 and 2.1 Amy Rice (Mon Feb 18 2019 - 15:16:00 CST)
- Re: Difference in ParseFEP result with versions 1.9.2 and 2.1 Brian Radak (Mon Feb 18 2019 - 16:31:07 CST)
- Re: Difference in ParseFEP result with versions 1.9.2 and 2.1 J茅r么me H茅nin (Mon Feb 18 2019 - 16:44:16 CST)
- Namdinator - a web service for automatic MDFF simulations Rune Thomas Kidmose (Mon Feb 18 2019 - 13:22:17 CST)
- Topo tools error in dihedral guess 丕爻丨丕賯 禺丿丕倬乇爻鬲 爻蹖丕賴賲夭诏蹖 (Mon Feb 18 2019 - 07:06:42 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Mon Feb 18 2019 - 08:46:13 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Mon Feb 18 2019 - 13:14:00 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Tue Feb 19 2019 - 01:59:57 CST)
- Re: Topo tools error in dihedral guess 丕爻丨丕賯 禺丿丕倬乇爻鬲 爻蹖丕賴賲夭诏蹖 (Tue Feb 19 2019 - 03:19:51 CST)
- Re: Topo tools error in dihedral guess 丕爻丨丕賯 禺丿丕倬乇爻鬲 爻蹖丕賴賲夭诏蹖 (Wed Feb 20 2019 - 02:33:51 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Wed Feb 20 2019 - 06:12:00 CST)
- Re: Topo tools error in dihedral guess 丕爻丨丕賯 禺丿丕倬乇爻鬲 爻蹖丕賴賲夭诏蹖 (Wed Feb 20 2019 - 02:45:56 CST)
- RE: Topo tools error in dihedral guess Vermaas, Joshua (Wed Feb 20 2019 - 13:50:35 CST)
- Re: Topo tools error in dihedral guess 丕爻丨丕賯 禺丿丕倬乇爻鬲 爻蹖丕賴賲夭诏蹖 (Wed Feb 20 2019 - 15:49:15 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Mon Feb 18 2019 - 08:46:13 CST)
- Regarding image quality in vmd Saikat Pal (Mon Feb 18 2019 - 04:35:08 CST)
- 3d visualization setup Anthony Cruz-Balberdy (Sat Feb 16 2019 - 13:47:29 CST)
- PDB structures of peptides Mikhail Suyetin (Thu Feb 14 2019 - 03:05:15 CST)
- Cannot merge psf and pdb files using psfgen Ern Ong (Wed Feb 13 2019 - 05:12:41 CST)
- Cannot merge psf and pdb files using psfgen Ern Ong (Wed Feb 13 2019 - 03:52:42 CST)
- MSD of membrane lipids Villalain Boullon, Jose (Mon Feb 11 2019 - 10:35:46 CST)
- minimal distance between atoms in all frame alberto (Tue Feb 05 2019 - 12:04:43 CST)
- measure distance atom from plane alberto (Tue Feb 05 2019 - 04:54:20 CST)
- Coloring different isosurfaces with user-defined colors Ellis, Matthew (Sat Feb 02 2019 - 04:38:32 CST)
- QwikMD and CUDA10 jrhau lung (Thu Jan 31 2019 - 05:43:53 CST)
- calculating number of water and osmolytes molecules at particular distance from protein surface. ISHRAT JAHAN (Wed Jan 30 2019 - 23:09:41 CST)
- regarding radius of a 3D sphere san kumar (Tue Jan 29 2019 - 11:55:01 CST)
- Conversion from gromacs trr trajectory into charmm trajectory Roshan Shrestha (Mon Jan 28 2019 - 23:14:21 CST)
- Bug fixed in volmap Giacomo Fiorin (Thu Jan 24 2019 - 21:30:23 CST)
- Uncertainty estimate of g(r) using measure gofr function Jim Parker (Mon Jan 21 2019 - 21:48:42 CST)
- Pause script, make display interactive, then resume script after user input Patrick Charchar (Wed Jan 16 2019 - 19:59:54 CST)
- FEP tutorial plot error surya narayanan chandrasekaran (Wed Jan 16 2019 - 07:00:25 CST)
- regarding the coordinate transformation on a curved surface to plane surface Subbarao Kanchi (Tue Jan 08 2019 - 18:01:28 CST)
- orient package problem Prabir Khatua (Wed Jan 02 2019 - 17:15:56 CST)
- Parsing error in TkConsole Seibold, Steve Allan (Wed Jan 02 2019 - 13:44:08 CST)
- Calculation of gofr for non-orthorhombic boxes HEMANTH H 18310019 (Tue Jan 01 2019 - 02:55:14 CST)
- Problem in loading netcdf file from LAMMPS output in VMD LIGESH B (Tue Jan 01 2019 - 00:05:34 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Tue Jan 01 2019 - 23:52:35 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 11:34:55 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Fri Jan 04 2019 - 11:43:06 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 12:10:52 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Fri Jan 04 2019 - 12:36:22 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 12:47:28 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 11:34:55 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Tue Jan 01 2019 - 23:52:35 CST)
- h-bond soroush ziaei (Sat Dec 22 2018 - 17:04:03 CST)
- Problems with rendering with POV-Ray Oliver S鴕ensen Siig (Sat Dec 22 2018 - 07:12:41 CST)
- beta barrel structure generation Prabir Khatua (Fri Dec 21 2018 - 16:41:42 CST)
- MDFF through VMD Error FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Somnath Dutta (Fri Dec 21 2018 - 09:39:40 CST)
- Dynamical Network Analysis 袗谢械泻褋邪薪写褉 袣芯褕泻邪褉芯胁 (Thu Dec 20 2018 - 02:53:47 CST)
- atom types depend on PSF/PDB reading order Gumbart, JC (Wed Dec 19 2018 - 18:46:23 CST)
- vrpn and vmd 1.9.3 - which version to use ? Paulo E. Abreu (Wed Dec 19 2018 - 03:41:42 CST)
- ring-like structure formation with distance restraints Prabir Khatua (Tue Dec 18 2018 - 21:32:48 CST)
- Error in Loading atom_style hybrid LAMMPS data file in VMD LIGESH B (Mon Dec 17 2018 - 08:27:34 CST)
- fftk problem in opt. bonded step Nicol谩s Veiga (Fri Dec 14 2018 - 14:57:59 CST)
- ARM Joey Gehring (Thu Dec 13 2018 - 10:29:58 CST)
- Assertion failure OS X 10.14 Per Larsson (Thu Dec 13 2018 - 03:11:53 CST)
- Free Energy Perturbation Analysis using VMD HOCHEOL LIM (Thu Dec 13 2018 - 01:24:02 CST)
- Heme PSF file generation and hydrogen peroxide parameter files HOCHEOL LIM (Thu Dec 13 2018 - 01:13:53 CST)
- Fwd: Extensions not working Francesco Pietra (Sun Dec 09 2018 - 01:29:24 CST)
- Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 01:45:08 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 07:22:26 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 10:54:14 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 12:54:13 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 12:55:30 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 14:06:47 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 10:54:14 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 07:22:26 CST)
- vmd error time too large/small to represent Stephani Macalino (Mon Dec 03 2018 - 20:49:06 CST)
- regarding h-bod calculation in tk console Jai Kumar (Sun Dec 02 2018 - 00:17:49 CST)
- Extensions not working Francesco Pietra (Sat Dec 01 2018 - 09:17:03 CST)
- mol representation Isosurface - Parameters? MD Simulation (Fri Nov 30 2018 - 06:36:17 CST)
- selection of water molecules around particular number of atoms Ashma Khan (Wed Nov 28 2018 - 23:54:42 CST)
- VMD - Measure water flow The Cromicus Productions (Wed Nov 28 2018 - 11:41:40 CST)
- REG building non standard solvent simulation box. surya narayanan chandrasekaran (Wed Nov 28 2018 - 03:27:16 CST)
- implicit membrane in QwikMD? Armando Jerome de Jesus (Tue Nov 27 2018 - 09:37:15 CST)
- Inverted measure fit of ring atoms mish (Tue Nov 27 2018 - 08:58:09 CST)
- How to add bond between atoms of same same or type in every molecule Remya Ann (Tue Nov 27 2018 - 07:14:59 CST)
- Cant use NAMDplot to plot Artur Duque Rossi (Sat Nov 24 2018 - 16:34:18 CST)
- Compiling VMD 1.9.3 64-bit on MacOS 10.13.6 Alex Sha (Fri Nov 23 2018 - 00:48:06 CST)
- gopython with python3 Guilherme da Silva (Thu Nov 22 2018 - 11:53:11 CST)
- CUDA 10 J茅r么me H茅nin (Thu Nov 22 2018 - 06:47:27 CST)
- Creating a pdb of periodic images of a unit cell Monika Madhavi (Tue Nov 20 2018 - 23:19:09 CST)
- VMD crashes when drag-and-dropping files in Windows Oleg Stroganov (Tue Nov 13 2018 - 04:16:09 CST)
- Patching for bond between protein and organic ligand Francesco Pietra (Mon Nov 12 2018 - 01:50:29 CST)
- RE: Patching for bond between protein and organic ligand Vermaas, Joshua (Mon Nov 12 2018 - 11:28:21 CST)
- Re: Patching for bond between protein and organic ligand Brian Radak (Mon Nov 12 2018 - 12:19:08 CST)
- Re: Patching for bond between protein and organic ligand Francesco Pietra (Tue Nov 13 2018 - 01:13:54 CST)
- Re: Patching for bond between protein and organic ligand Brian Radak (Tue Nov 13 2018 - 08:37:37 CST)
- Re: Patching for bond between protein and organic ligand Gumbart, James C (Tue Nov 13 2018 - 19:54:19 CST)
- Re: Patching for bond between protein and organic ligand Brian Radak (Mon Nov 12 2018 - 12:19:08 CST)
- RE: Patching for bond between protein and organic ligand Vermaas, Joshua (Mon Nov 12 2018 - 11:28:21 CST)
- Concatenate Outputs McGuire, Kelly (Fri Nov 09 2018 - 14:12:21 CST)
- how to change material and color of an atom selection in TkConsole Abolfazl Musavi (Thu Nov 08 2018 - 16:11:17 CST)
- autopsf ERROR FRANCESCO TORRICELLA (Thu Nov 08 2018 - 08:58:57 CST)
- Create new atoms Michail Lazaratos (Wed Nov 07 2018 - 13:45:21 CST)
- VMD hangs on startup (MacOSX 10.14) Nathan M. Lim (UCI) (Wed Nov 07 2018 - 12:42:01 CST)
- VMD does not display bonds Behnam Ghalami (Wed Nov 07 2018 - 02:26:03 CST)
- Save specific atoms from multiple frame pdb Abhik Ghosh Moulick (Wed Nov 07 2018 - 01:33:10 CST)
- PSFgen failure Anatoly Chernyshev (Mon Nov 05 2018 - 07:13:11 CST)
- Question McGuire, Kelly (Sun Nov 04 2018 - 17:16:27 CST)
- creating topology for a unique structure soroush ziaei (Sun Nov 04 2018 - 05:49:31 CST)
- unknown residue type Francesco Pietra (Sun Nov 04 2018 - 03:08:49 CST)
- Newby unable to see secondary structure in New Cartoon Gary Turner (Sat Nov 03 2018 - 12:40:19 CDT)
- Building amino acid simulation box. surya narayanan chandrasekaran (Thu Nov 01 2018 - 23:45:39 CDT)
- Dynamic Bonds Question McGuire, Kelly (Wed Oct 31 2018 - 12:58:01 CDT)
- selecting residues in a heterodimer Raag Saluja (Mon Oct 29 2018 - 01:42:50 CDT)
- Problem of saving .trj file in vmd Sasthi Charan Mandal (Sat Oct 27 2018 - 08:00:43 CDT)
- Unknown atom type CG205 with CGenFF by psfgen Francesco Pietra (Fri Oct 26 2018 - 10:09:08 CDT)
- Domain error in parseFEP Kevin Song (Tue Oct 23 2018 - 11:58:47 CDT)
- Problems with CGenFF and oxetane ring Francesco Pietra (Tue Oct 23 2018 - 11:04:27 CDT)
- Pressure Control Norge Cruz Hern谩ndez (Tue Oct 23 2018 - 09:26:09 CDT)
- AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Mon Oct 22 2018 - 08:58:12 CDT)
- Re: AutoPSF error with glycana (end of segment error) Jo茫o Ribeiro (Mon Oct 22 2018 - 10:05:01 CDT)
- Re: AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Mon Oct 22 2018 - 10:16:32 CDT)
- Re: AutoPSF error with glycana (end of segment error) Jo茫o Ribeiro (Mon Oct 22 2018 - 11:46:39 CDT)
- Sv: AutoPSF error with glycana (end of segment error) Rune Thomas Kidmose (Mon Oct 22 2018 - 15:45:04 CDT)
- Re: AutoPSF error with glycana (end of segment error) Jo茫o Ribeiro (Mon Oct 22 2018 - 16:22:32 CDT)
- Re: AutoPSF error with glycana (end of segment error) Rune Thomas Kidmose (Tue Oct 23 2018 - 10:21:44 CDT)
- Re: AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Thu Oct 25 2018 - 07:25:24 CDT)
- Re: AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Mon Oct 22 2018 - 10:16:32 CDT)
- Re: AutoPSF error with glycana (end of segment error) Jo茫o Ribeiro (Mon Oct 22 2018 - 10:05:01 CDT)
- Measure Center Question McGuire, Kelly (Sat Oct 20 2018 - 18:20:57 CDT)
- error in analyse fep simulation (parse fep) soroush ziaei (Fri Oct 19 2018 - 08:54:44 CDT)
- Ambient/direct light missing after adding Glow lights to a tachyon scene with glow_lights.tcl Oliver Grant (Fri Oct 19 2018 - 06:04:37 CDT)
- Dipole Watcher Plugin - atom selection not updated at every frame when drawing dipoles Eric Lang (Thu Oct 18 2018 - 06:31:41 CDT)
- 3D hardware Rubner, Oliver (Wed Oct 17 2018 - 03:52:54 CDT)
- psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 10:13:08 CDT)
- Re: psfgen patching protein-ligand Jo茫o Ribeiro (Tue Oct 16 2018 - 10:21:24 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 10:47:35 CDT)
- Re: psfgen patching protein-ligand Jo茫o Ribeiro (Tue Oct 16 2018 - 10:56:05 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 15:10:45 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Mon Oct 22 2018 - 12:03:17 CDT)
- Fwd: psfgen patching protein-ligand Francesco Pietra (Mon Oct 22 2018 - 12:07:43 CDT)
- Re: psfgen patching protein-ligand Jo茫o Ribeiro (Mon Oct 22 2018 - 12:53:34 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 23 2018 - 08:50:35 CDT)
- Re: psfgen patching protein-ligand Jo茫o Ribeiro (Mon Nov 12 2018 - 09:35:10 CST)
- Re: psfgen patching protein-ligand Francesco Pietra (Mon Nov 12 2018 - 10:23:41 CST)
- Fwd: psfgen patching protein-ligand Francesco Pietra (Mon Nov 12 2018 - 10:27:33 CST)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 10:47:35 CDT)
- Re: psfgen patching protein-ligand Jo茫o Ribeiro (Tue Oct 16 2018 - 10:21:24 CDT)
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- IFD complex for solvation Stephani Macalino (Tue Oct 09 2018 - 02:08:30 CDT)
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- Fwd: Diffusion coefficient calculation Kinkini Jayasundara (Sat Sep 29 2018 - 11:30:47 CDT)
- RTX for raytracing Stefan Doerr (Thu Sep 27 2018 - 05:20:51 CDT)
- measuring all the bonds and angles in /Tcl hosein geraili (Tue Sep 25 2018 - 14:48:52 CDT)
- RBCG Builder Lewis, Kimberly A (Mon Sep 24 2018 - 13:27:06 CDT)
- First "Hands-On" Workshop on Structural DNA Nanotechnology Jo茫o Ribeiro (Mon Sep 24 2018 - 09:13:30 CDT)
- Mail about TCL script subramanian vidhyasankar (Sun Sep 23 2018 - 06:36:17 CDT)
- reg membrane hydration using tcl script of vmd subramanian vidhyasankar (Sat Sep 22 2018 - 08:14:09 CDT)
- mail about renumbering of residues subramanian vidhyasankar (Sat Sep 22 2018 - 08:08:18 CDT)
- Query about PME data in .dx format Peter Mawanga (Fri Sep 14 2018 - 04:32:10 CDT)
- problem with Catdcd Sonibare, Kolawole (Mon Sep 10 2018 - 14:13:34 CDT)
- Enhanced Sampling and Free-Energy Calculations Lectures Jo茫o Ribeiro (Mon Sep 10 2018 - 12:02:42 CDT)
- problem of calculating hydrogen bonds Sasthi Charan Mandal (Sat Sep 08 2018 - 02:19:13 CDT)
- Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 04:30:51 CDT)
- Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 12:42:29 CDT)
- RE: Re: Error at Dihedral Optimization using fftk Vermaas, Joshua (Fri Sep 07 2018 - 13:32:40 CDT)
- Re: Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 14:08:03 CDT)
- Re: Re: Error at Dihedral Optimization using fftk JC Gumbart (Sun Sep 09 2018 - 10:52:30 CDT)
- Re: Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Sun Sep 09 2018 - 13:19:36 CDT)
- Re: Re: Error at Dihedral Optimization using fftk JC Gumbart (Sun Sep 09 2018 - 13:22:22 CDT)
- RE: Re: Error at Dihedral Optimization using fftk Vermaas, Joshua (Fri Sep 07 2018 - 13:32:40 CDT)
- Re: Error at Dihedral Optimization using fftk Pawel Kedzierski (Wed Dec 12 2018 - 10:09:45 CST)
- Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 12:42:29 CDT)
- RMSD for specific residue abhik.ghosh_at_bose.res.in (Wed Sep 05 2018 - 09:42:29 CDT)
- Connect particular residues with a line Raag Saluja (Sat Sep 01 2018 - 12:39:02 CDT)
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- MDFF Check CCC problem Rune Thomas Kidmose (Thu Aug 30 2018 - 03:13:28 CDT)
- Plugins show no text Peter Kroon (Tue Aug 28 2018 - 05:04:06 CDT)
- RE: truncated atom types with fftk v.1.93 - Resolved ABEL Stephane (Mon Aug 27 2018 - 10:45:37 CDT)
- truncated atom types with fftk v.1.93 ABEL Stephane (Mon Aug 27 2018 - 08:48:47 CDT)
- Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 08:26:35 CDT)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Mon Aug 27 2018 - 10:10:00 CDT)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 10:20:02 CDT)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Mon Aug 27 2018 - 10:22:28 CDT)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 10:32:30 CDT)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Wed Mar 06 2019 - 12:25:49 CST)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Wed Mar 06 2019 - 23:43:53 CST)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 10:20:02 CDT)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Mon Aug 27 2018 - 10:10:00 CDT)
- (no subject) CMP (Mon Aug 27 2018 - 05:45:29 CDT)
- Solvate Plugin Error - Reg Mani Kandan (Mon Aug 27 2018 - 04:31:18 CDT)
- Secondary structure representation stays static Peter Mawanga (Mon Aug 27 2018 - 02:41:22 CDT)
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- Running Cionize1.0 Archana Sonawani-Jagtap (Sat Aug 25 2018 - 15:27:45 CDT)
- Network Path Backtraces amin sagar (Sat Aug 18 2018 - 13:13:41 CDT)
- h-bond water molecules Adriano Santana Sanchez (Sat Aug 18 2018 - 08:54:38 CDT)
- Determining energies between two different molecules Nick Palmer (Thu Aug 16 2018 - 10:58:05 CDT)
- Atomselection with the position selected conditions inside the loop is not working properly fan li (Thu Aug 16 2018 - 05:47:22 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Ashar Malik (Thu Aug 16 2018 - 06:50:38 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Axel Kohlmeyer (Thu Aug 16 2018 - 08:14:03 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Jo茫o Ribeiro (Thu Aug 16 2018 - 08:23:51 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Giacomo Fiorin (Thu Aug 16 2018 - 09:09:27 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly fan li (Thu Aug 16 2018 - 10:24:54 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Ashar Malik (Thu Aug 16 2018 - 11:22:21 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly fan li (Thu Aug 16 2018 - 12:18:18 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Jo茫o Ribeiro (Thu Aug 16 2018 - 08:23:51 CDT)
- Userani.tcl script jumps frame after no play sperez14_at_us.es (Wed Aug 15 2018 - 09:26:52 CDT)
- Unexpected results after loop added to the script fan li (Tue Aug 14 2018 - 11:32:26 CDT)
- display residues near ligand Graham Jackson (Sat Aug 11 2018 - 02:38:55 CDT)
- Research Programmers Positions Available Jo茫o Ribeiro (Fri Aug 10 2018 - 13:30:28 CDT)
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- Derivation of parameters for a ligand with a Cl atom with fftk ABEL Stephane (Mon Aug 06 2018 - 08:21:57 CDT)
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- Updates McGuire, Kelly (Sun Aug 05 2018 - 14:06:26 CDT)
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- Alascan, psfgen errors Matthew Kenney (Thu Aug 02 2018 - 17:19:16 CDT)
- Please remove me from mailing list Christine Horejs (Wed Aug 01 2018 - 04:59:12 CDT)
- Rendering incompletion during Tachyon rendering Tony Myung Keun Cho (Tue Jul 31 2018 - 19:22:46 CDT)
- request for provide a script of rmsf Sasthi Charan Mandal (Tue Jul 31 2018 - 10:21:20 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Tue Jul 31 2018 - 19:40:09 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 01 2018 - 03:17:04 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Wed Aug 01 2018 - 03:39:39 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 01 2018 - 09:53:16 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Wed Aug 01 2018 - 10:22:57 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Thu Aug 02 2018 - 00:17:46 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 29 2018 - 11:45:47 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 01 2018 - 03:17:04 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Tue Jul 31 2018 - 19:40:09 CDT)
- Solvate plugin Error - reg Mani Kandan (Tue Jul 31 2018 - 06:24:53 CDT)
- VR McGuire, Kelly (Mon Jul 30 2018 - 19:38:07 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 14:03:29 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 14:06:36 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 14:24:17 CDT)
- Re: VR Philip Loche (Tue Jul 31 2018 - 15:24:46 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 15:40:27 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 16:39:23 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 21:00:49 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 21:37:13 CDT)
- Re: VR Philip Loche (Wed Aug 01 2018 - 02:32:42 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 14:06:36 CDT)
- Re: VR Alin Marin Elena - UKRI STFC (Wed Aug 22 2018 - 15:49:22 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 14:03:29 CDT)
- "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL, September 10-14, 2018 Jo茫o Ribeiro (Mon Jul 30 2018 - 16:15:45 CDT)
- Force Field Toolkit (ffTK) Norge Cruz Hern谩ndez (Mon Jul 30 2018 - 05:32:39 CDT)
- request for provide a script of rmsf Sasthi Charan Mandal (Mon Jul 30 2018 - 04:24:22 CDT)
- split multi frame pdb abhik.ghosh_at_bose.res.in (Mon Jul 30 2018 - 00:18:10 CDT)
- Farewell VMD Vlastimil Z铆ma (Sun Jul 29 2018 - 14:02:54 CDT)
- reg compilation of vmd 1.9.3 subramanian vidhyasankar (Sun Jul 29 2018 - 08:38:56 CDT)
- Mail reg compilation of vmd 1.9.3 plugin subramanian vidhyasankar (Sat Jul 28 2018 - 03:10:19 CDT)
- Fusing proteins together Nick Palmer (Thu Jul 26 2018 - 13:53:48 CDT)
- Porcupine plot with nmwiz Funzo_at_seznam.cz (Thu Jul 26 2018 - 09:34:19 CDT)
- Timeline error Jordi Bujons (Tue Jul 24 2018 - 12:13:01 CDT)
- psfgen building fails due to locale Stefan Doerr (Mon Jul 23 2018 - 07:28:16 CDT)
- IR spectral density calculation Aashish Bhatt (Sun Jul 22 2018 - 12:53:34 CDT)
- (no subject) abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:16:07 CDT)
- (no subject) abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:00:41 CDT)
- Building Al2O3 or Fe2O3 Morrissey, Liam S. (Sat Jul 21 2018 - 15:59:29 CDT)
- New Cartoon and Simulation Question McGuire, Kelly (Wed Jul 18 2018 - 19:18:34 CDT)
- Deleting a given bond type by topo tool Amir Hossein Saeedi Dehaghani (Wed Jul 18 2018 - 07:15:40 CDT)
- Fwd: problemas con la opt de los enlaces dalpizar_at_fbio.uh.cu (Tue Jul 17 2018 - 15:05:07 CDT)
- Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 03:59:29 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 08:00:32 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 08:56:10 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 09:37:37 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 09:47:20 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 09:52:42 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 10:16:30 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 08:56:10 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 08:00:32 CDT)
- Deleting a given bond type by topo tool Amir Hossein Saeedi Dehaghani (Tue Jul 17 2018 - 02:58:20 CDT)
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- Issue with visualizing model Yu,Wenjin (Thu Jul 12 2018 - 10:35:57 CDT)
- Problem with parametrization using ffTK Ushasi Pramanik 1710228 (Thu Jul 12 2018 - 04:58:55 CDT)
- Reopening the Discussion on visual VMD container: GLX now enabled Matthew Kenney (Tue Jul 10 2018 - 16:47:00 CDT)
- Fixing Martini PSF Ganne, Akshatha (Mon Jul 09 2018 - 18:00:38 CDT)
- Gamma Silicon Nitrite Crystal - Reg Mani Kandan (Mon Jul 09 2018 - 12:48:32 CDT)
- Tachyon with DoF ignores FocalLength Peter Kroon (Mon Jul 09 2018 - 09:36:14 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Wed Aug 01 2018 - 03:48:45 CDT)
- RE: Re: Tachyon with DoF ignores FocalLength Vermaas, Joshua (Wed Aug 01 2018 - 06:02:13 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength John Stone (Thu Aug 02 2018 - 11:58:08 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength Peter Kroon (Fri Aug 03 2018 - 04:17:28 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength John Stone (Fri Aug 03 2018 - 08:30:47 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength RABIUL ISLAM (Fri Aug 03 2018 - 09:50:37 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength Peter Kroon (Fri Aug 03 2018 - 09:32:48 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength RABIUL ISLAM (Sat Aug 04 2018 - 07:23:56 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Mon Aug 27 2018 - 05:40:52 CDT)
- Re: Tachyon with DoF ignores FocalLength John Stone (Mon Aug 27 2018 - 09:58:44 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Tue Aug 28 2018 - 03:51:13 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Wed Aug 01 2018 - 03:48:45 CDT)
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- Merge Structures Bug McGuire, Kelly (Fri Jul 06 2018 - 16:34:43 CDT)
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- Re: Problem with QwikMD and glycans Jo茫o Ribeiro (Thu Jul 05 2018 - 13:28:00 CDT)
- Membrane Protein Tutorial Bug McGuire, Kelly (Thu Jul 05 2018 - 10:24:41 CDT)
- Ph.D. candidate position in biomolecular modeling or bioinformatics Jan Brezovsky (Wed Jul 04 2018 - 05:33:36 CDT)
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- Possible to run VMD in parallel - Reg Mani Kandan (Tue Jul 03 2018 - 13:42:21 CDT)
- How to define charge group and pass it to topo writegmxtop fan li (Mon Jul 02 2018 - 05:17:56 CDT)
- distance-based selections applied to velDCD Mike McCallum (Fri Jun 29 2018 - 16:01:56 CDT)
- Different colors of a residue at different frames Cruzeiro,Vinicius Wilian D (Thu Jun 28 2018 - 16:13:29 CDT)
- Inorganic builder in no display mode - Reg Mani Kandan (Wed Jun 27 2018 - 10:32:00 CDT)
- Error in PCA analysis Aravind Ravichandran (Wed Jun 27 2018 - 05:26:18 CDT)
- Error: not possible to build nodeSelString: () and () Sophie Mader (Tue Jun 26 2018 - 04:27:04 CDT)
- Frame out of range when trying to edit .psf Francesco Pietra (Sat Jun 23 2018 - 11:46:37 CDT)
- catdcd error opening reading index file Francesco Pietra (Sat Jun 23 2018 - 04:11:57 CDT)
- Strange Bond Behavior Question McGuire, Kelly (Fri Jun 22 2018 - 15:42:20 CDT)
- Re: namd-l: Strange Bond Behavior Question Jo茫o Ribeiro (Fri Jun 22 2018 - 16:08:07 CDT)
- Opt. Bonded: Angle in multiple rings dalpizar_at_fbio.uh.cu (Fri Jun 22 2018 - 11:15:59 CDT)
- vmd keeps crashing Graham Jackson (Fri Jun 22 2018 - 04:31:28 CDT)
- Solvation using Charmm36 TIP3P Muthukumaran Rajagopalan (Fri Jun 22 2018 - 02:31:54 CDT)
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- QwikMD Restraints Question McGuire, Kelly (Wed Jun 20 2018 - 17:37:28 CDT)
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- ribbon on different thickness Graham Jackson (Wed Jun 13 2018 - 10:29:45 CDT)
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- Re: topotools/topogromacs John Stone (Mon Jun 11 2018 - 15:53:42 CDT)
- RE: topotools/topogromacs Vermaas, Joshua (Wed Jun 13 2018 - 04:53:57 CDT)
- Re: topotools/topogromacs Francesco Pietra (Wed Jun 13 2018 - 08:42:25 CDT)
- RE: topotools/topogromacs Vermaas, Joshua (Wed Jun 13 2018 - 09:10:27 CDT)
- Re: topotools/topogromacs Francesco Pietra (Wed Jun 13 2018 - 09:30:15 CDT)
- Fwd: topotools/topogromacs Francesco Pietra (Wed Jun 13 2018 - 09:35:04 CDT)
- RE: topotools/topogromacs Vermaas, Joshua (Wed Jun 13 2018 - 04:53:57 CDT)
- Re: topotools/topogromacs John Stone (Mon Jun 11 2018 - 15:53:42 CDT)
- Protein mutation issues Bose, Ritwika (Sun Jun 10 2018 - 23:27:29 CDT)
- (no subject) shyam sharma (Sat Jun 09 2018 - 12:14:07 CDT)
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- VMD Update Questions McGuire, Kelly (Tue Jun 05 2018 - 12:11:42 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 10:32:19 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 12:05:08 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 14:08:48 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 14:48:55 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 15:05:52 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 15:07:12 CDT)
- Re: VMD Update Questions Axel Kohlmeyer (Mon Jun 11 2018 - 15:11:52 CDT)
- Re: VMD Update Questions John Stone (Tue Jun 12 2018 - 15:54:48 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 12:05:08 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 10:32:19 CDT)
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- problem with mol IDs when running script from same VMD session. Rune Thomas Kidmose (Sun Jun 03 2018 - 14:02:31 CDT)
- NAMD and FFTK on a Mac tclick_at_nctu.edu.tw (Fri Jun 01 2018 - 07:24:41 CDT)
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- Re: Alignment with RMSD trajectory tool Ashar Malik (Tue May 29 2018 - 21:00:08 CDT)
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- Reading DL_POLY trajectory Ali Ahmed (Sat May 26 2018 - 20:02:17 CDT)
- ABF Question McGuire, Kelly (Sat May 26 2018 - 13:44:20 CDT)
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- Scan Torsions McGuire, Kelly (Wed May 23 2018 - 13:28:01 CDT)
- Finding Local Kinetic Energy or Velocities Nick Palmer (Wed May 23 2018 - 10:28:53 CDT)
- NAMD Energy Plugin: Cutoff error Peter Mawanga (Wed May 23 2018 - 08:42:05 CDT)
- SPC/E Water models Mani Kandan (Wed May 23 2018 - 04:36:36 CDT)
- How autoionzie plugin works? Mani Kandan (Tue May 22 2018 - 12:44:47 CDT)
- Re: How autoionzie plugin works? Jo茫o Ribeiro (Tue May 22 2018 - 13:25:25 CDT)
- Re: How autoionzie plugin works? Jo茫o Ribeiro (Tue May 22 2018 - 13:43:05 CDT)
- Re: How autoionzie plugin works? Mani Kandan (Tue May 22 2018 - 13:46:29 CDT)
- Re: How autoionzie plugin works? Jo茫o Ribeiro (Tue May 22 2018 - 14:18:21 CDT)
- Re: How autoionzie plugin works? Mani Kandan (Tue May 22 2018 - 14:58:21 CDT)
- Re: How autoionzie plugin works? Peter Freddolino (Tue May 22 2018 - 21:43:40 CDT)
- Re: How autoionzie plugin works? Jo茫o Ribeiro (Tue May 22 2018 - 13:43:05 CDT)
- Re: How autoionzie plugin works? Jo茫o Ribeiro (Tue May 22 2018 - 13:25:25 CDT)
- How can I redefine fragments in VMD fan li (Tue May 22 2018 - 11:43:38 CDT)
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- FFTK Tutorial Charge Opt Question McGuire, Kelly (Fri May 18 2018 - 23:59:48 CDT)
- RE: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Sat May 19 2018 - 13:43:41 CDT)
- Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Sat May 19 2018 - 14:21:07 CDT)
- RE: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Sat May 19 2018 - 15:26:15 CDT)
- Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Sat May 19 2018 - 21:31:37 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question Jo茫o Ribeiro (Mon May 21 2018 - 09:45:36 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Mon May 21 2018 - 11:11:40 CDT)
- RE: Re: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Mon May 21 2018 - 12:05:26 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Mon May 21 2018 - 12:44:05 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question Jo茫o Ribeiro (Mon May 21 2018 - 13:47:15 CDT)
- Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Sat May 19 2018 - 14:21:07 CDT)
- RE: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Sat May 19 2018 - 13:43:41 CDT)
- FFTK Charge Optimization McGuire, Kelly (Fri May 18 2018 - 11:58:14 CDT)
- invalid command name "La::mevsvd_br" SHAHEE ISLAM (Fri May 18 2018 - 00:43:54 CDT)
- rst7 as input file bug James Kress (Thu May 17 2018 - 18:36:27 CDT)
- QwikMD Add Topo+Param Question McGuire, Kelly (Thu May 17 2018 - 12:40:08 CDT)
- .js file format for point cloud data TRINH Minh Hieu (Wed May 16 2018 - 20:35:56 CDT)
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- Error: vecscale: parameters must have data dalpizar_at_fbio.uh.cu (Fri May 11 2018 - 15:17:11 CDT)
- Error loading .phi file Andy Liu (Thu May 10 2018 - 19:03:43 CDT)
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- A fill for "bodies" build out of surfacs Daniel M鰈ler (Mon May 07 2018 - 05:12:40 CDT)
- VMD in OS X Yosemite version 10.1.1.5 locuswendy (Sat May 05 2018 - 23:04:19 CDT)
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- Re: Coloring Scheme Spectrum John Stone (Sun May 06 2018 - 21:13:55 CDT)
- Re: Coloring Scheme Spectrum John Stone (Sun May 06 2018 - 21:20:13 CDT)
- Re: Coloring Scheme Spectrum McGuire, Kelly (Sun May 06 2018 - 23:34:32 CDT)
- Re: Coloring Scheme Spectrum Giacomo Fiorin (Mon May 07 2018 - 07:33:02 CDT)
- Re: Coloring Scheme Spectrum McGuire, Kelly (Mon May 07 2018 - 09:47:44 CDT)
- Re: Coloring Scheme Spectrum Andrew Dalke (Mon May 07 2018 - 11:10:24 CDT)
- Re: Coloring Scheme Spectrum McGuire, Kelly (Mon May 07 2018 - 11:57:26 CDT)
- Re: Coloring Scheme Spectrum John Stone (Sun May 06 2018 - 21:13:55 CDT)
- RMSD Question McGuire, Kelly (Fri May 04 2018 - 17:47:31 CDT)
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- Unable to load molecule 旯氙检灛 (Thu May 03 2018 - 05:16:28 CDT)
- CellPack McGuire, Kelly (Wed May 02 2018 - 23:03:31 CDT)
- Re: CellPack John Stone (Thu May 03 2018 - 10:22:22 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 11:20:26 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 18:53:18 CDT)
- RE: CellPack Vermaas, Joshua (Thu May 03 2018 - 19:57:08 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 20:11:39 CDT)
- Re: CellPack John Stone (Thu May 03 2018 - 20:35:46 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 20:41:58 CDT)
- Re: CellPack Ajasja Ljubeti膷 (Fri May 04 2018 - 03:17:20 CDT)
- Re: CellPack John Stone (Fri May 04 2018 - 11:02:02 CDT)
- Re: CellPack McGuire, Kelly (Fri May 04 2018 - 11:06:12 CDT)
- Re: CellPack John Stone (Thu May 03 2018 - 10:22:22 CDT)
- Displaying gaussian cube file produced by Delphi Andy Liu (Mon Apr 30 2018 - 17:04:24 CDT)
- coloring method User for graphics like tubes? Daniel M鰈ler (Mon Apr 30 2018 - 04:39:25 CDT)
- DCD Question McGuire, Kelly (Sun Apr 29 2018 - 16:45:35 CDT)
- Waters per residue in ion channel McGuire, Kelly (Sat Apr 28 2018 - 18:26:48 CDT)
- excluding atoms Doaa Saayed (Sat Apr 28 2018 - 05:29:58 CDT)
- RMSD of lipid molecules Sadegh Faramarzi Ganjabad (Thu Apr 26 2018 - 23:30:21 CDT)
- Re: RMSD of lipid molecules Giacomo Fiorin (Fri Apr 27 2018 - 07:01:36 CDT)
- Re: RMSD of lipid molecules Brian Radak (Fri Apr 27 2018 - 08:59:34 CDT)
- Re: RMSD of lipid molecules Udaya Dahal (Fri Apr 27 2018 - 09:21:39 CDT)
- Re: RMSD of lipid molecules Sadegh Faramarzi Ganjabad (Fri Apr 27 2018 - 11:38:34 CDT)
- Re: RMSD of lipid molecules Ashar Malik (Fri Apr 27 2018 - 12:23:12 CDT)
- Re: RMSD of lipid molecules Sadegh Faramarzi Ganjabad (Fri Apr 27 2018 - 12:25:06 CDT)
- Re: RMSD of lipid molecules Ashar Malik (Fri Apr 27 2018 - 12:31:57 CDT)
- Re: RMSD of lipid molecules Giacomo Fiorin (Fri Apr 27 2018 - 12:41:46 CDT)
- Re: RMSD of lipid molecules Brian Radak (Fri Apr 27 2018 - 08:59:34 CDT)
- Re: RMSD of lipid molecules Giacomo Fiorin (Fri Apr 27 2018 - 07:01:36 CDT)
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- MOPAC Orbitals McGuire, Kelly (Tue Apr 24 2018 - 12:13:29 CDT)
- NAMD Developer Workshop at Urbana IL, June 11-12, 2018 Jo茫o Ribeiro (Tue Apr 24 2018 - 08:57:57 CDT)
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- Resp on VMD SM Bargeen A Turzo (Mon Apr 23 2018 - 15:46:20 CDT)
- RESP2.4 and FFTK SM Bargeen A Turzo (Mon Apr 23 2018 - 14:22:38 CDT)
- RESP PATH SM Bargeen A Turzo (Mon Apr 23 2018 - 12:49:56 CDT)
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- the number of hydrogen bonds per residue Qasim Pars (Fri Apr 20 2018 - 08:27:07 CDT)
- Smoothing McGuire, Kelly (Thu Apr 19 2018 - 16:12:01 CDT)
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- making a movie of multiple molecules Sahithya Iyer (Wed Apr 18 2018 - 08:50:54 CDT)
- NAMD Color By Velocity McGuire, Kelly (Tue Apr 17 2018 - 13:28:19 CDT)
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- reverting coarse-grained system to all-atom system Rabeta Yeasmin (Sun Apr 15 2018 - 18:57:10 CDT)
- Re: namd-l: Re: Bug with FEP? Francesco Pietra (Sun Apr 15 2018 - 02:48:10 CDT)
- build virus envelope sunyeping (Thu Apr 12 2018 - 23:34:06 CDT)
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- (no subject) JOHN FLANAGAN (Tue Apr 10 2018 - 16:36:48 CDT)
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- Re: namd-l: ParseFEP error with FEP in segments at different lambda schedule Brian Radak (Tue Apr 10 2018 - 07:56:40 CDT)
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- Fwd: Protein backbone representation for non standard residues / molecules Dallas Warren (Wed Mar 28 2018 - 22:21:46 CDT)
- labels with sub/superscripts or even symbols sperez14_at_us.es (Tue Mar 27 2018 - 01:50:05 CDT)
- Using radial coloring method from user-defined center Miguel Caro (Mon Mar 26 2018 - 10:09:27 CDT)
- NAMD simulation Denish Poudyal (Sun Mar 25 2018 - 20:25:03 CDT)
- i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster??? Denish Poudyal (Sun Mar 25 2018 - 20:22:34 CDT)
- Re: i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster??? Ashar Malik (Sun Mar 25 2018 - 20:44:48 CDT)
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- Regarding installation of DruGui SM Bargeen A Turzo (Sat Mar 24 2018 - 06:30:29 CDT)
- Regarding Installation of DruGui SM Bargeen A Turzo (Fri Mar 23 2018 - 23:23:04 CDT)
- FFTK, recognize wildcard atom types in forcefields Bryan Roessler (Fri Mar 23 2018 - 19:38:06 CDT)
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- Re: Parallelization to an axis Axel Kohlmeyer (Fri Mar 23 2018 - 09:57:52 CDT)
- Re: Parallelization to an axis Sandip Mondal (Fri Mar 23 2018 - 12:42:45 CDT)
- Re: Parallelization to an axis Christian Leitold (Fri Mar 23 2018 - 14:17:58 CDT)
- Re: Parallelization to an axis Sandip Mondal (Sat Mar 24 2018 - 00:04:49 CDT)
- Re: Parallelization to an axis Christian Leitold (Sat Mar 24 2018 - 00:56:46 CDT)
- Re: Parallelization to an axis Sandip Mondal (Mon Mar 26 2018 - 01:26:23 CDT)
- Re: Parallelization to an axis Sandip Mondal (Fri Mar 23 2018 - 12:42:45 CDT)
- Re: Parallelization to an axis Vermaas, Joshua (Fri Mar 23 2018 - 12:26:59 CDT)
- Re: Parallelization to an axis Axel Kohlmeyer (Fri Mar 23 2018 - 09:57:52 CDT)
- ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 02:05:41 CDT)
- Fwd: ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 09:00:15 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Fri Mar 23 2018 - 10:48:17 CDT)
- Re: Fwd: ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 15:31:58 CDT)
- Fwd: Fwd: ParseFEP for restating FEP Francesco Pietra (Sun Mar 25 2018 - 04:24:50 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Mon Mar 26 2018 - 11:57:28 CDT)
- Re: Fwd: ParseFEP for restating FEP Francesco Pietra (Mon Mar 26 2018 - 15:57:11 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Mon Mar 26 2018 - 16:13:19 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Fri Mar 23 2018 - 10:48:17 CDT)
- Fwd: ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 09:00:15 CDT)
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- Changing isosurface wireframe thickness when rendering with TachyonL Rune Thomas Kidmose (Wed Mar 21 2018 - 07:39:19 CDT)
- Command to save visualization state. sperez14_at_us.es (Wed Mar 21 2018 - 05:47:38 CDT)
- polyhedra representation + periodic images sperez14_at_us.es (Wed Mar 21 2018 - 05:44:55 CDT)
- Average structure Williams Miranda (Wed Mar 21 2018 - 01:37:13 CDT)
- 2-Dimensional map of a lipid molecule around the protein Shashank Ranjan Srivastava (Wed Mar 21 2018 - 01:16:55 CDT)
- Re: 2-Dimensional map of a lipid molecule around the protein Giacomo Fiorin (Wed Mar 21 2018 - 09:06:36 CDT)
- Propagating PDB coordinates using Quaternion matrix Peter Mawanga (Tue Mar 20 2018 - 09:29:06 CDT)
- Re: Propagating PDB coordinates using Quaternion matrix Ashar Malik (Tue Mar 20 2018 - 10:00:57 CDT)
- Adding Hydroxide Ions to the simulation box Aman Jindal (Tue Mar 20 2018 - 01:56:10 CDT)
- Text mode data extraction without trajectory update Udaya Dahal (Sun Mar 18 2018 - 01:31:36 CDT)
- "'Hands-on" Workshop on Computational Biophysics at Pittsburgh, PA, May 21-25, 2018 Jo茫o Ribeiro (Fri Mar 16 2018 - 15:47:15 CDT)
- Occupancy volume quantitation Lizelle Lubbe (Fri Mar 16 2018 - 09:31:37 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Fri Mar 16 2018 - 10:10:31 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 02:47:27 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Mon Mar 19 2018 - 06:41:46 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 07:06:41 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Mon Mar 19 2018 - 07:12:06 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 07:15:09 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 02:47:27 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Fri Mar 16 2018 - 10:10:31 CDT)
- how to merge two pdb in a single file SHAHEE ISLAM (Fri Mar 16 2018 - 09:20:03 CDT)
- non-heme iron coordination with His in NAMD2 Anna Petroff (Thu Mar 15 2018 - 10:33:15 CDT)
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- Writing all transformed coordinates into single file Peter Mawanga (Wed Mar 14 2018 - 14:23:05 CDT)
- Membrane tutorial regarding RAHUL SURESH (Wed Mar 14 2018 - 10:54:23 CDT)
- Building plugins with _USE_ZLIB (how to activate preprocessor macro) Christian Leitold (Tue Mar 13 2018 - 14:19:48 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 14:29:20 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Christian Leitold (Tue Mar 13 2018 - 15:25:36 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Axel Kohlmeyer (Tue Mar 13 2018 - 16:32:37 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 16:48:50 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Axel Kohlmeyer (Tue Mar 13 2018 - 16:53:08 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 17:10:13 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Axel Kohlmeyer (Tue Mar 13 2018 - 16:30:12 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 14:29:20 CDT)
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- Graphics Requirement for VMD Debostuti Ghoshdastidar (Tue Mar 13 2018 - 06:29:47 CDT)
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- (no subject) shyam sharma (Fri Mar 09 2018 - 01:15:48 CST)
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- (no subject) shyam sharma (Thu Mar 08 2018 - 06:29:59 CST)
- Creating VR-movies with tachyon renderer Per Larsson (Thu Mar 08 2018 - 03:49:38 CST)
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- Re: namd-l: Fwd: parseFEP domain error Francesco Pietra (Wed Mar 07 2018 - 08:39:49 CST)
- VMD Segfault Fedora 27 iamcool777able . (Tue Mar 06 2018 - 13:12:01 CST)
- Creating VR-movies with tachyon renderer Per Larsson (Tue Mar 06 2018 - 06:52:54 CST)
- Re: Creating VR-movies with tachyon renderer Vermaas, Joshua (Tue Mar 06 2018 - 11:53:35 CST)
- Re: Creating VR-movies with tachyon renderer Dallas Warren (Tue Mar 06 2018 - 14:23:07 CST)
- Re: Creating VR-movies with tachyon renderer Per Larsson (Wed Mar 07 2018 - 02:09:16 CST)
- Re: Creating VR-movies with tachyon renderer Per Larsson (Wed Mar 07 2018 - 08:09:49 CST)
- Re: Creating VR-movies with tachyon renderer Vermaas, Joshua (Wed Mar 07 2018 - 12:20:30 CST)
- Re: Creating VR-movies with tachyon renderer Per Larsson (Wed Mar 07 2018 - 14:24:31 CST)
- Re: Creating VR-movies with tachyon renderer Dallas Warren (Wed Mar 07 2018 - 16:10:17 CST)
- Re: Creating VR-movies with tachyon renderer John Stone (Thu Mar 15 2018 - 00:03:16 CDT)
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- Re: Running vmd Giacomo Fiorin (Sun Mar 04 2018 - 13:58:37 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 04:26:16 CST)
- Re: Running vmd Ashar Malik (Mon Mar 05 2018 - 05:00:48 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 06:30:24 CST)
- Re: Running vmd Ashar Malik (Mon Mar 05 2018 - 06:54:44 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 09:14:11 CST)
- Re: Running vmd Axel Kohlmeyer (Mon Mar 05 2018 - 09:50:16 CST)
- Re: Running vmd John Stone (Mon Mar 05 2018 - 09:59:51 CST)
- Re: Running vmd Mahmood Naderan (Tue Mar 06 2018 - 11:55:43 CST)
- Re: Running vmd Axel Kohlmeyer (Mon Mar 05 2018 - 04:55:07 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 04:26:16 CST)
- Re: Running vmd Giacomo Fiorin (Sun Mar 04 2018 - 13:58:37 CST)
- netcdf for plugins Mahmood Naderan (Sun Mar 04 2018 - 07:11:08 CST)
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- salvation of heavy water Suresh Ghimire (Mon Feb 19 2018 - 09:12:33 CST)
- Obtaining VMD view matrices for tcl script Rune Thomas Kidmose (Mon Feb 19 2018 - 01:18:59 CST)
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- setting up POPS or POPG in VMD Rabeta Yeasmin (Mon Feb 12 2018 - 16:32:33 CST)
- Re: setting up POPS or POPG in VMD Brian Radak (Tue Feb 13 2018 - 10:31:47 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:05:15 CST)
- Re: setting up POPS or POPG in VMD amin sagar (Tue Feb 13 2018 - 13:36:17 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:41:25 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:44:48 CST)
- Re: setting up POPS or POPG in VMD Giacomo Fiorin (Tue Feb 13 2018 - 13:29:09 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:36:35 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:05:15 CST)
- Re: setting up POPS or POPG in VMD Brian Radak (Tue Feb 13 2018 - 10:31:47 CST)
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- Color scale bar Malvika K (Thu Feb 08 2018 - 11:15:46 CST)
- how to align simulated peptide in complex structure. Seera Suryanarayana (Thu Feb 08 2018 - 01:13:20 CST)
- "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL, September 10-14, 2018 Jo茫o Ribeiro (Wed Feb 07 2018 - 10:46:51 CST)
- NAMD Developer Workshop at Urbana IL, June 11-12, 2018 Jo茫o Ribeiro (Wed Feb 07 2018 - 10:46:41 CST)
- "Hands-On" Workshop on QM/MM Simulations at Urbana, IL, April 5-7, 2018 Jo茫o Ribeiro (Wed Feb 07 2018 - 10:44:57 CST)
- metalloprotein simulation t.shivam_at_iitg.ernet.in (Wed Feb 07 2018 - 10:11:39 CST)
- Can specden produce the autocorrelation and not only the powerspectrum? sperez14_at_us.es (Tue Feb 06 2018 - 12:13:34 CST)
- Question regarding VMD In-situ Remote Visualization on clusters Feng Chen (Mon Feb 05 2018 - 11:28:41 CST)
- How to copy/paste a membrane patch to create a larger membrane? thiagorrg UFC (Mon Feb 05 2018 - 08:34:15 CST)
- Re: How to copy/paste a membrane patch to create a larger membrane? Giacomo Fiorin (Mon Feb 05 2018 - 08:55:50 CST)
- Re: How to copy/paste a membrane patch to create a larger membrane? Stefan Doerr (Mon Feb 05 2018 - 09:10:55 CST)
- Re: How to copy/paste a membrane patch to create a larger membrane? thiagorrg UFC (Mon Feb 05 2018 - 12:34:43 CST)
- "adding polymer to CNT" soroush ziaei (Fri Feb 02 2018 - 07:21:00 CST)
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- Having problem with geometrical structure parinaz bashirbanaem (Sun Jan 28 2018 - 04:16:44 CST)
- Colvars module doesn't work Michael Morin (Fri Jan 26 2018 - 14:11:29 CST)
- Vmd coefficient tool Suresh Ghimire (Thu Jan 25 2018 - 03:39:56 CST)
- Alignment issues Heather Carson (Wed Jan 24 2018 - 07:18:44 CST)
- Superimpose Structures Wong Li Zhe (Tue Jan 23 2018 - 20:49:59 CST)
- MSD for water inside CNT Suresh Ghimire (Tue Jan 23 2018 - 02:28:15 CST)
- Re: [phenixbb] secondary structure presentation in VMD CPMAS Chen (Mon Jan 22 2018 - 15:58:44 CST)
- VMD ffTK: The determination of a correct spin multiplicity value Ern Ong (Mon Jan 22 2018 - 02:14:54 CST)
- saving velocities with VMD Marcela Madrid (Sun Jan 21 2018 - 14:55:30 CST)
- secondary structure new cartoon presentation CPMAS Chen (Sun Jan 21 2018 - 08:55:56 CST)
- VMD ffTK plugin: Error termination occurred at Gaussian input files generated for water interaction Ern Ong (Sat Jan 20 2018 - 07:09:26 CST)
- MultiSeq conflicting with DYLD_LYBRARY_PATH fabio trovato (Thu Jan 18 2018 - 04:05:02 CST)
- Parameter and topology Suresh Ghimire (Wed Jan 17 2018 - 23:59:37 CST)
- Isosurface wireframe & solid surface representation Vincent Ustach (Wed Jan 17 2018 - 10:02:22 CST)
- Rotate a specific residue and save the coordinates in VMD Roshan Shrestha (Tue Jan 16 2018 - 22:25:01 CST)
- catdcd plugin for Windows users Ern Ong (Tue Jan 16 2018 - 00:51:57 CST)
- View sidechains in VMD Roshan Shrestha (Mon Jan 15 2018 - 22:51:22 CST)
- contact map in Rainbow scale Roshan Shrestha (Fri Jan 12 2018 - 11:55:56 CST)
- Loading multiple dcd files crashes VMD Peter Mawanga (Thu Jan 11 2018 - 07:46:33 CST)
- selecting residues within 5-10A of another molecule Rabeta Yeasmin (Wed Jan 10 2018 - 15:22:26 CST)
- Re: selecting residues within 5-10A of another molecule Vermaas, Joshua (Wed Jan 10 2018 - 17:02:01 CST)
- Re: selecting residues within 5-10A of another molecule amin sagar (Wed Jan 10 2018 - 23:57:28 CST)
- Re: selecting residues within 5-10A of another molecule Ashar Malik (Wed Jan 10 2018 - 23:05:01 CST)
- How to calculate head group and acyl chain contact (separately) within 5 Anstrom of a particular protein residue? Robert Nairn (Wed Jan 10 2018 - 08:20:14 CST)
- having problem with disulfide bond Shahee Islam (Tue Jan 09 2018 - 00:04:01 CST)
- ppm image conversion gpu dependent? Dow Hurst (Mon Jan 08 2018 - 17:22:03 CST)
- (no subject) Suresh Ghimire (Sat Jan 06 2018 - 06:06:46 CST)
- (no subject) Suresh Ghimire (Sat Jan 06 2018 - 05:49:07 CST)
- vector passing through a point and parallel to z axis, TCL code Rabeta Yeasmin (Thu Jan 04 2018 - 18:57:39 CST)
- Improper terms in topology files processed by psfgen Jadzia Dax (Tue Jan 02 2018 - 01:29:30 CST)
- Re: Improper terms in topology files processed by psfgen Peter Freddolino (Tue Jan 02 2018 - 09:31:43 CST)
- Re: Improper terms in topology files processed by psfgen Jadzia Dax (Wed Jan 03 2018 - 03:15:39 CST)
- Re: Improper terms in topology files processed by psfgen Brian Radak (Fri Jan 05 2018 - 10:40:00 CST)
- Re: Improper terms in topology files processed by psfgen Peter Freddolino (Fri Jan 05 2018 - 11:56:31 CST)
- Re: Improper terms in topology files processed by psfgen Vermaas, Joshua (Fri Jan 05 2018 - 12:23:30 CST)
- Re: Improper terms in topology files processed by psfgen Jadzia Dax (Wed Jan 03 2018 - 03:15:39 CST)
- Re: Improper terms in topology files processed by psfgen Peter Freddolino (Tue Jan 02 2018 - 09:31:43 CST)
- Problem drawing cylinders with a foreach loop - TCL syntax issue. Jeffrey A Tibbitt (Mon Jan 01 2018 - 20:16:26 CST)
- TCL equivalent for ---> Mouse Pick Mode Center Jeffrey A Tibbitt (Mon Jan 01 2018 - 18:55:49 CST)
- (no subject) Suresh Ghimire (Sun Dec 31 2017 - 21:52:35 CST)
- question about point substitution A鈫扷 parinaz bashirbanaem (Sat Dec 30 2017 - 12:32:03 CST)
- Save contact map data in other formats besides postscript Roshan Shrestha (Wed Dec 20 2017 - 17:20:23 CST)
- vector passing through a point and parallel to z axis, TCL code Rabeta Yeasmin (Wed Dec 20 2017 - 17:12:38 CST)
- removing rotation in trajectories Seibold, Steve Allan (Wed Dec 20 2017 - 10:11:12 CST)
- Location of measure command script divyabharathi korlepara (Wed Dec 20 2017 - 03:43:12 CST)
- tcl script not executed when submitted using a slurm script Stephen Thomas (Tue Dec 19 2017 - 23:55:17 CST)
- Re: tcl script not executed when submitted using a slurm script Ashar Malik (Wed Dec 20 2017 - 01:38:26 CST)
- Re: tcl script not executed when submitted using a slurm script John Stone (Wed Dec 20 2017 - 09:08:23 CST)
- Contact map using VMD Contact Map Plugin Roshan Shrestha (Tue Dec 19 2017 - 20:49:22 CST)
- Crack generation in Grapehene sheet sumit nagar (Tue Dec 19 2017 - 03:56:32 CST)
- How can I measure bond length with 鈥渘ame ** and resid **" in scripts? 鏈潙鑲 (Tue Dec 19 2017 - 01:56:45 CST)
- Re: How can I measure bond length with 鈥渘ame ** and resid **" in scripts? Ashar Malik (Tue Dec 19 2017 - 02:42:41 CST)
- Re: How can I measure bond length with Q=80=9Cname_**_and_resid_**=22_in_scripts=3F?= 鏈潙鑲 (Tue Dec 19 2017 - 03:03:19 CST)
- Re: Re: How can I measure bond length with 鈥渘ame ** and resid **" in scripts? Ashar Malik (Tue Dec 19 2017 - 06:20:48 CST)
- Re: Re: Re: How can I measure bond length with $B!H(Bname ** and resid **" in scripts? Vermaas, Joshua (Tue Dec 19 2017 - 12:09:13 CST)
- Re: Re: Re: How can I measure bond length with 鈥渘ame ** and resid **" in scripts? 鏈潙鑲 (Tue Dec 19 2017 - 22:01:20 CST)
- Re: Re: Re: How can I measure bond length with $B!H(Bname ** and resid **" in scripts? Vermaas, Joshua (Wed Dec 20 2017 - 12:21:47 CST)
- Re: How can I measure bond length with Q=80=9Cname_**_and_resid_**=22_in_scripts=3F?= 鏈潙鑲 (Tue Dec 19 2017 - 03:03:19 CST)
- Re: How can I measure bond length with 鈥渘ame ** and resid **" in scripts? Ashar Malik (Tue Dec 19 2017 - 02:42:41 CST)
- Using python interpreter with VMD sumit nagar (Mon Dec 18 2017 - 23:46:43 CST)
- Suspected bug in BaseMolecule::default_mass Peter Jensen Husen (Mon Dec 18 2017 - 03:35:44 CST)
- (no subject) Suresh Ghimire (Sun Dec 17 2017 - 06:57:45 CST)
- Cycling between files using the same output file Windle,Stephen (Fri Dec 15 2017 - 16:39:25 CST)
- distance between two groups of atoms Rabeta Yeasmin (Fri Dec 15 2017 - 14:39:06 CST)
- Same starting configuration gives two starting values of backbone RMSD Monika Madhavi (Fri Dec 15 2017 - 05:52:39 CST)
- FFTK, regarding RAHUL SURESH (Fri Dec 15 2017 - 05:45:54 CST)
- Same starting configuration gives two values of backbone RMSD Monika Madhavi (Fri Dec 15 2017 - 04:55:54 CST)
- Re: Same starting configuration gives two values of backbone RMSD Ashar Malik (Fri Dec 15 2017 - 06:10:00 CST)
- Re: Same starting configuration gives two values of backbone RMSD Monika Madhavi (Fri Dec 15 2017 - 06:30:24 CST)
- Re: Same starting configuration gives two values of backbone RMSD Ashar Malik (Fri Dec 15 2017 - 06:58:29 CST)
- Re: Same starting configuration gives two values of backbone RMSD Monika Madhavi (Fri Dec 15 2017 - 16:35:22 CST)
- Re: Same starting configuration gives two values of backbone RMSD Ashar Malik (Fri Dec 15 2017 - 18:56:57 CST)
- Re: Same starting configuration gives two values of backbone RMSD Monika Madhavi (Fri Dec 15 2017 - 06:30:24 CST)
- Re: Same starting configuration gives two values of backbone RMSD Ashar Malik (Fri Dec 15 2017 - 06:10:00 CST)
- I would like to get a trajectory file in PDB. Can I use like data frame in VMD? 鏈潙鑲 (Wed Dec 13 2017 - 00:41:56 CST)
- Nonbond energy between 3 part jrhau lung (Mon Dec 11 2017 - 20:52:21 CST)
- Re: Nonbond energy between 3 part Giacomo Fiorin (Mon Dec 11 2017 - 21:51:19 CST)
- Re: Nonbond energy between 3 part jrhau lung (Tue Dec 12 2017 - 01:13:10 CST)
- Re: Nonbond energy between 3 part Peter Freddolino (Tue Dec 12 2017 - 07:25:16 CST)
- Re: Nonbond energy between 3 part Ashar Malik (Tue Dec 12 2017 - 08:43:02 CST)
- Re: Nonbond energy between 3 part jrhau lung (Tue Dec 12 2017 - 21:04:04 CST)
- Re: Nonbond energy between 3 part Ashar Malik (Tue Dec 12 2017 - 21:41:31 CST)
- Re: Nonbond energy between 3 part Peter Freddolino (Tue Dec 12 2017 - 21:50:52 CST)
- Re: Nonbond energy between 3 part jrhau lung (Tue Dec 12 2017 - 22:04:57 CST)
- Re: Nonbond energy between 3 part Ashar Malik (Wed Dec 13 2017 - 01:34:08 CST)
- Re: Nonbond energy between 3 part jrhau lung (Tue Dec 12 2017 - 01:13:10 CST)
- Re: Nonbond energy between 3 part Giacomo Fiorin (Mon Dec 11 2017 - 21:51:19 CST)
- icon and desktop file for VMD Ren茅 Genz (Mon Dec 11 2017 - 16:40:27 CST)
- Missing substituents in the converted pdb format Lalehan Ozalp (Mon Dec 11 2017 - 03:01:46 CST)
- How to calculate density profile M K (Sun Dec 10 2017 - 23:21:39 CST)
- GUI mod request Dow Hurst (Sat Dec 09 2017 - 10:06:37 CST)
- Faster vector computations in Tcl J茅r么me H茅nin (Fri Dec 08 2017 - 12:41:33 CST)
- Water molar mass in autoionize.tcl Peter Jensen Husen (Fri Dec 08 2017 - 07:16:07 CST)
- measure rmsf - relative to what? Gudrun Gygli (Fri Dec 08 2017 - 06:54:33 CST)
- FFTK plugin: domain error: argument not in valid range David Fischermeier (Fri Dec 08 2017 - 06:14:49 CST)
- VMD interface and TkConsole font Yanxiao Han (Thu Dec 07 2017 - 16:58:01 CST)
- Regarding RDF calculation Aashish Bhatt (Fri Dec 01 2017 - 09:32:36 CST)
- Changing the format of atom labels from %f.3 to something else sperez14_at_us.es (Thu Nov 30 2017 - 04:40:09 CST)
- Changing the format of atom labels from %f.3 to something else sperez14_at_us.es (Thu Nov 30 2017 - 02:43:50 CST)
- Remote indirect GLX, Xquartz and nvidia drivers Osman Bar谋艧 Malc谋o臒lu (Wed Nov 29 2017 - 03:42:49 CST)
- creation of psf t.shivam_at_iitg.ernet.in (Mon Nov 27 2017 - 02:40:53 CST)
- Re: Timeline SASA Lizelle Lubbe (Thu Nov 23 2017 - 06:21:07 CST)
- Timeline SASA Lizelle Lubbe (Thu Nov 23 2017 - 04:48:39 CST)
- Topotools guessing angle and bond topology from CONNECT info in PDB files Vaidyanathan Sethuraman (Tue Nov 21 2017 - 23:40:33 CST)
- Re: Topotools guessing angle and bond topology from CONNECT info in PDB files Axel Kohlmeyer (Wed Nov 22 2017 - 00:41:16 CST)
- error : invalid command name "psfgen" in 6pti tutorial 鏈潙鑲 (Mon Nov 20 2017 - 21:47:25 CST)
- Exocyclic dihedral MD Simulation (Mon Nov 20 2017 - 12:13:22 CST)
- graphics in VMD and overlay Nuno Sousa Cerqueira (Tue Nov 14 2017 - 12:21:21 CST)
- SMD: constant velocity output analysis (Force and displacement plot from output file) Keshab Thapa (Sun Nov 12 2017 - 23:44:48 CST)
- How to plot LOAD vs DISPLACEMENT from SMD output result using VMD Keshab Thapa (Thu Nov 09 2017 - 00:38:24 CST)
- Gas migration pathway Lizelle Lubbe (Wed Nov 08 2017 - 12:43:15 CST)
- Order of atom indexes for a Fragment Clement Fang Jin Koh (Sun Nov 05 2017 - 22:18:22 CST)
- sqm not active in molefacture t.shivam_at_iitg.ernet.in (Thu Nov 02 2017 - 05:26:30 CDT)
- Fwd: Topotools to keep atomtypes same Vaidyanathan Sethuraman (Wed Nov 01 2017 - 16:34:33 CDT)
- Error using psfgen "unknown residue type SOD" Charles Hoying (Wed Nov 01 2017 - 04:59:23 CDT)
- Re: Computing atom distances Ashar Malik (Tue Oct 31 2017 - 17:00:25 CDT)
- Computing atom distances Windle,Stephen (Tue Oct 31 2017 - 15:52:54 CDT)
- Re: Computing atom distances Chitrak Gupta (Tue Oct 31 2017 - 17:27:38 CDT)
- Re: Computing atom distances Vermaas, Joshua (Tue Oct 31 2017 - 18:03:12 CDT)
- Re: Computing atom distances Windle,Stephen (Fri Nov 03 2017 - 16:29:48 CDT)
- Re: Computing atom distances Vermaas, Joshua (Fri Nov 03 2017 - 16:35:00 CDT)
- Re: Computing atom distances Windle,Stephen (Fri Nov 03 2017 - 16:57:55 CDT)
- Re: Computing atom distances Vermaas, Joshua (Fri Nov 03 2017 - 17:32:09 CDT)
- Re: Computing atom distances Windle,Stephen (Fri Nov 03 2017 - 17:43:44 CDT)
- Re: Computing atom distances Chitrak Gupta (Fri Nov 03 2017 - 18:16:55 CDT)
- Re: Computing atom distances Windle,Stephen (Sat Nov 04 2017 - 17:05:40 CDT)
- Re: Computing atom distances Vermaas, Joshua (Sat Nov 04 2017 - 20:30:45 CDT)
- Re: Computing atom distances Ashar Malik (Sun Nov 05 2017 - 00:25:41 CDT)
- Re: Computing atom distances Windle,Stephen (Fri Nov 03 2017 - 16:29:48 CDT)
- Trajectory Smoothing Window Zize with implicit solvent Fabian Gonzalez (Tue Oct 31 2017 - 09:50:54 CDT)
- Render in spherical equirectangular projection Dallas Warren (Mon Oct 30 2017 - 20:08:00 CDT)
- Atoms in rings MD Simulation (Fri Oct 27 2017 - 09:31:41 CDT)
- how to turn on antialiasing yx38 (Thu Oct 26 2017 - 23:31:06 CDT)
- pbc wrapping problem Seibold, Steve Allan (Thu Oct 26 2017 - 10:37:56 CDT)
- Moving atoms so that origin is at fixed position with respect to the display Miguel Caro (Thu Oct 26 2017 - 08:39:07 CDT)
- Wrapping molecules in unit box Seibold, Steve Allan (Wed Oct 25 2017 - 11:43:23 CDT)
- Water atoms' explosion out of solvate box in my RBCG simulation on NAMD ThatMind TV (Mon Oct 23 2017 - 05:53:23 CDT)
- write a new dcd file for a sub selection of atoms Monika Madhavi (Mon Oct 23 2017 - 01:24:03 CDT)
- vmd-I: Creating PSF from PDB files Shehan Parmar (Sun Oct 22 2017 - 17:57:00 CDT)
- problems reading rst file as amber7 restart with VMD 1.9.3 Capponi, Sara (Fri Oct 20 2017 - 12:27:48 CDT)
- FFTK Dihedral Optimization Error Nikolaos Galanakis (Fri Oct 20 2017 - 11:50:39 CDT)
- VMD error loading dcd files Daipayan Sarkar (Wed Oct 18 2017 - 21:01:39 CDT)
- vmd not working on remote server POTTER T.D. (Tue Oct 17 2017 - 08:20:07 CDT)
- VMD contact map - long helical structure Zyla Dawid (Mon Oct 16 2017 - 03:41:44 CDT)
- calculate g(r) melika_ bm85 (Sun Oct 15 2017 - 05:49:12 CDT)
- Fwd: Problem with Loading Bond Angle Optimization Gaussian .log file into the fftk Matt Albertolle (Thu Oct 12 2017 - 11:30:04 CDT)
- Re: Fwd: Problem with Loading Bond Angle Optimization Gaussian .log file into the fftk JC Gumbart (Fri Oct 20 2017 - 17:15:01 CDT)
- Bug report for NAMDgui plugin in VMD (1.9.4 alpha 8) Pawel Kedzierski (Wed Oct 11 2017 - 04:10:20 CDT)
- PDB loading in old vmd versions Stefan Boresch (Wed Oct 11 2017 - 01:40:25 CDT)
- HOW TO VISUALIZE HBOND AFTER SIMULATIONS THROUGH VMD Neha Gupta (Wed Oct 11 2017 - 00:04:10 CDT)
- Question about fftk Luba Simhaev (Tue Oct 10 2017 - 15:52:41 CDT)
- Smoothening labels in vmd Vikas Dubey (Tue Oct 10 2017 - 07:09:01 CDT)
- VMD from remote workstation Pawel Kedzierski (Tue Oct 10 2017 - 03:45:58 CDT)
- Stuttering in video with TachyonL-Optix Dallas Warren (Mon Oct 09 2017 - 20:43:57 CDT)
- how to calculate rmsd? Seera Suryanarayana (Mon Oct 09 2017 - 00:18:06 CDT)
- Fwd: Klaus Schulten Memorial Symposium, registration and accommodation David Hardy (Thu Oct 05 2017 - 15:29:08 CDT)
- Re: Unable to load O'Reilly Science Art (Thu Oct 05 2017 - 13:43:16 CDT)
- Unable to load O'Reilly Science Art (Thu Oct 05 2017 - 13:07:21 CDT)
- Start in VMD luiz beline (Wed Oct 04 2017 - 13:31:43 CDT)
- an continuous increased pattern for RMSD curve after long run fatehi_at_eng.uk.ac.ir (Tue Oct 03 2017 - 13:08:44 CDT)
- a question about force field toolkit Albert (Tue Oct 03 2017 - 12:47:03 CDT)
- Visualising Molecular Vibrations Mo Rahman (Tue Oct 03 2017 - 08:29:13 CDT)
- Improper angle-ffTK, regarding RAHUL SURESH (Tue Oct 03 2017 - 05:44:49 CDT)
- VMD with sensible phantom haptic device using VRPN Xiaohu Hu (Mon Oct 02 2017 - 13:30:36 CDT)
- Tachyon OptiX vs OSPRay for isosurface and clipping control Rune Thomas Kidmose (Sun Oct 01 2017 - 14:20:13 CDT)
- ffTK, regarding RAHUL SURESH (Sun Oct 01 2017 - 02:22:19 CDT)
- Rendering 3D 360 Movies at higher resolution Dallas Warren (Wed Sep 27 2017 - 23:01:17 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Sun Oct 01 2017 - 06:46:06 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Vermaas, Joshua (Mon Oct 02 2017 - 12:22:25 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Mon Oct 02 2017 - 16:47:59 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Chris Neale (Mon Oct 02 2017 - 18:03:28 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Mon Oct 02 2017 - 21:14:47 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Giacomo Fiorin (Mon Oct 02 2017 - 18:06:26 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Mon Oct 02 2017 - 21:19:56 CDT)
- Re: Rendering 3D 360 Movies at higher resolution John Stone (Tue Oct 03 2017 - 13:58:52 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Wed Oct 04 2017 - 16:35:41 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Mon Oct 02 2017 - 21:11:33 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Vermaas, Joshua (Mon Oct 02 2017 - 12:22:25 CDT)
- Re: Rendering 3D 360 Movies at higher resolution Dallas Warren (Sun Oct 01 2017 - 06:46:06 CDT)
- Rgarding the output for dx file of occupancy(VolMap) Sheena Singh (Mon Sep 18 2017 - 10:38:19 CDT)
- Re: Rgarding the output for dx file of occupancy(VolMap) Giacomo Fiorin (Mon Sep 18 2017 - 11:20:04 CDT)
- VMD installation RAHUL SURESH (Mon Sep 18 2017 - 05:07:39 CDT)
- Error in merging two PDB files Aishwarya Smriti (Sun Sep 17 2017 - 04:05:44 CDT)
- Error in merging two PDB files Aishwarya Smriti (Sat Sep 16 2017 - 05:19:34 CDT)
- MDFF Check -ccc in different VMD versions Rune Thomas Kidmose (Fri Sep 15 2017 - 05:36:46 CDT)
- vmd not able to generate new cartoon representation t.shivam_at_iitg.ernet.in (Fri Sep 15 2017 - 00:46:10 CDT)
- parallel processing in vmd Monika Madhavi (Thu Sep 14 2017 - 20:20:43 CDT)
- Change atom types in topotools Rajesh (Thu Sep 14 2017 - 08:07:12 CDT)
- polar hydrogens Albers, Thomas (Wed Sep 13 2017 - 12:07:46 CDT)
- libX11.so.6 error Francesco Pietra (Wed Sep 13 2017 - 10:04:00 CDT)
- segname field in pdb files Goedde, Chris (Tue Sep 12 2017 - 15:46:09 CDT)
- Unable to visualize the solid isosurfaces Shivanand Malaganvi (Tue Sep 12 2017 - 10:46:00 CDT)
- Electrostatic interaction calculations using the NAMD Energy Plugin and PME Michael LeVine (Tue Sep 12 2017 - 09:37:30 CDT)
- intel_do_flush_locked failed: Cannot allocate memory Saikat Pal (Sat Sep 09 2017 - 00:07:35 CDT)
- Creating PSF from PDB files Shehan Parmar (Thu Sep 07 2017 - 22:15:34 CDT)
- Select Atoms that are bonded to specific atom type Arthur Vale (Thu Sep 07 2017 - 15:09:20 CDT)
- Re: VRML files from VMD are malformed John Stone (Wed Sep 06 2017 - 21:48:06 CDT)
- tcl command "lremove" not working in VMD text mode Devanand T (Wed Sep 06 2017 - 16:08:44 CDT)
- ACS COMP awards announcement John Stone (Wed Sep 06 2017 - 14:27:41 CDT)
- VMD Seg fault on startup in Fedora 26 sooraj achar (Sun Sep 03 2017 - 17:19:26 CDT)
- Study the hydrogen bond in VMD Roshan Shrestha (Sat Sep 02 2017 - 06:19:11 CDT)
- rlwrap: Command not found. Saikat Pal (Sat Sep 02 2017 - 01:07:17 CDT)
- install VMD IN parallel Saikat Pal (Fri Sep 01 2017 - 05:59:37 CDT)
- Cannot show the simulation box lan hoa Trinh (Thu Aug 31 2017 - 17:21:01 CDT)
- FfTK RAHUL SURESH (Thu Aug 31 2017 - 10:35:21 CDT)
- electrostatic potential along channel axis Williams Miranda (Wed Aug 30 2017 - 16:25:28 CDT)
- VMD 1.9.4 alpha 8 posted for download... John Stone (Wed Aug 30 2017 - 12:14:19 CDT)
- Unable to visualize the solid isosurfaces Shivanand Malaganvi (Wed Aug 30 2017 - 07:12:33 CDT)
- 780Ti and NAMD2 jrhau lung (Wed Aug 30 2017 - 06:14:54 CDT)
- Error while using Alanine Scanning Plugin amin sagar (Tue Aug 29 2017 - 08:37:47 CDT)
- Is it possible to use colvars module in VMD python mode? yjcoshc_at_gmail.com (Fri Aug 25 2017 - 20:30:33 CDT)
- Selection Text for two C atoms with a double bond Arthur Vale (Thu Aug 24 2017 - 16:55:20 CDT)
- VMD not starting after nvidia update Remya Ann (Wed Aug 23 2017 - 05:52:36 CDT)
- TachyonL-OptiX Dallas Warren (Mon Aug 21 2017 - 19:20:00 CDT)
- Functionalizing Mohsen Farshad (Mon Aug 21 2017 - 09:30:19 CDT)
- bond updating in VMD Albert (Sat Aug 19 2017 - 00:20:27 CDT)
- Visualize temperature Manish Gupta (Fri Aug 18 2017 - 12:04:54 CDT)
- convert frames to nano seconds Saikat Pal (Wed Aug 16 2017 - 08:31:58 CDT)
- Optimal path calculation using NetworkView Souvik Sinha (Mon Aug 14 2017 - 03:59:07 CDT)
- ffTK RAHUL SURESH (Mon Aug 14 2017 - 03:14:35 CDT)
- Problem loading Amber trajectory George Tzotzos (Sun Aug 13 2017 - 08:40:50 CDT)
- Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities? Christopher Neale (Sat Aug 12 2017 - 11:29:49 CDT)
- Re: Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities? John Stone (Thu Aug 24 2017 - 15:37:18 CDT)
- Re: Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities? Prof. Eddie (Wed Oct 11 2017 - 13:08:38 CDT)
- Re: Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities? John Stone (Fri Oct 13 2017 - 15:05:33 CDT)
- Re: Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities? John Stone (Thu Mar 22 2018 - 11:31:04 CDT)
- Re: Is occulus rift plug-and-play with VMD yet? If so, what are the capabilities? John Stone (Thu Aug 24 2017 - 15:37:18 CDT)
- How to get 3D figure of solvent accessible surface area from APBS output Rabeta Yeasmin (Fri Aug 11 2017 - 17:19:24 CDT)
- ffTK RAHUL SURESH (Fri Aug 11 2017 - 02:04:38 CDT)
- Finding atoms in protein-lipid system having electrostatic interaction Rabeta Yeasmin (Wed Aug 09 2017 - 13:33:44 CDT)
- Software for molecular electrostatic calculations Rabeta Yeasmin (Wed Aug 09 2017 - 13:07:34 CDT)
- vmd smooth trajectory distorted molecule Albert (Wed Aug 09 2017 - 03:59:33 CDT)
- Re: vmd smooth trajectory distorted molecule Axel Kohlmeyer (Wed Aug 09 2017 - 05:40:02 CDT)
- Re: vmd smooth trajectory distorted molecule Albert (Wed Aug 09 2017 - 09:00:59 CDT)
- Re: vmd smooth trajectory distorted molecule Axel Kohlmeyer (Wed Aug 09 2017 - 09:15:58 CDT)
- Re: vmd smooth trajectory distorted molecule Albert (Wed Aug 09 2017 - 12:25:55 CDT)
- Re: vmd smooth trajectory distorted molecule Axel Kohlmeyer (Wed Aug 09 2017 - 13:00:15 CDT)
- Re: vmd smooth trajectory distorted molecule Robin Betz (Wed Aug 09 2017 - 14:01:11 CDT)
- Re: vmd smooth trajectory distorted molecule Albert (Wed Aug 09 2017 - 14:18:32 CDT)
- Re: vmd smooth trajectory distorted molecule Ajasja Ljubeti膷 (Wed Aug 09 2017 - 14:43:31 CDT)
- Re: vmd smooth trajectory distorted molecule Chris Ing (Wed Aug 09 2017 - 15:18:25 CDT)
- Re: vmd smooth trajectory distorted molecule Strahs, Dr. Daniel Bernard (Wed Aug 09 2017 - 10:27:39 CDT)
- Re: vmd smooth trajectory distorted molecule Albert (Wed Aug 09 2017 - 09:00:59 CDT)
- Re: vmd smooth trajectory distorted molecule Axel Kohlmeyer (Wed Aug 09 2017 - 05:40:02 CDT)
- RDF analysis using GROMACS trajectory faride badalkhani (Mon Aug 07 2017 - 08:02:05 CDT)
- RE: autoionize not neutralizing the system Albers, Thomas (Sun Aug 06 2017 - 12:26:58 CDT)
- autoionize not neutralizing the system t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 09:51:29 CDT)
- Re: autoionize not neutralizing the system Giacomo Fiorin (Sun Aug 06 2017 - 10:46:37 CDT)
- Re: autoionize not neutralizing the system t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 21:30:32 CDT)
- Re: autoionize not neutralizing the system Axel Kohlmeyer (Sun Aug 06 2017 - 22:26:32 CDT)
- Re: autoionize not neutralizing the system t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 23:07:36 CDT)
- Re: autoionize not neutralizing the system Giacomo Fiorin (Mon Aug 07 2017 - 07:18:28 CDT)
- Re: autoionize not neutralizing the system Ashar Malik (Sun Aug 06 2017 - 22:41:58 CDT)
- Re: autoionize not neutralizing the system t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 23:14:38 CDT)
- Re: autoionize not neutralizing the system t.shivam_at_iitg.ernet.in (Sun Aug 06 2017 - 21:30:32 CDT)
- Re: autoionize not neutralizing the system Chitrak Gupta (Sun Aug 06 2017 - 11:50:54 CDT)
- Re: autoionize not neutralizing the system Ashar Malik (Sun Aug 06 2017 - 11:11:45 CDT)
- Re: autoionize not neutralizing the system Giacomo Fiorin (Sun Aug 06 2017 - 10:46:37 CDT)
- FFTK gaussian log Laura Joana (Thu Aug 03 2017 - 17:40:27 CDT)
- identifying the specific coordinates of a voxel Daniel Strahs (Thu Aug 03 2017 - 12:30:30 CDT)
- Problem with cionize Sebastian Reiter (Tue Aug 01 2017 - 14:57:23 CDT)
- Molecule builder for large number of molecules t.shivam_at_iitg.ernet.in (Mon Jul 31 2017 - 07:32:56 CDT)
- ffTk, regarding RAHUL SURESH (Mon Jul 31 2017 - 05:13:44 CDT)
- Viewing single lipid layer in vmd Roshan Shrestha (Mon Jul 31 2017 - 03:42:05 CDT)
- ffTK, regarding RAHUL SURESH (Sat Jul 29 2017 - 03:15:46 CDT)
- FFTk, dihedral optimization RAHUL SURESH (Sat Jul 29 2017 - 02:45:46 CDT)
- VMD text Nuno Sousa Cerqueira (Fri Jul 28 2017 - 05:33:44 CDT)
- Protein move out of the water box in a QwikMD setup MD simulation using explicit solvent condition jrhau lung (Wed Jul 26 2017 - 20:37:32 CDT)
- sparse volumetric file format r xu (Wed Jul 26 2017 - 15:53:07 CDT)
- Re: Unequal atoms size Afnan Sultan (Wed Jul 26 2017 - 03:08:01 CDT)
- ffTK: neutral pyruvate group and charged pyruvate group at beta-D-mannose Ern Ong (Wed Jul 26 2017 - 01:40:49 CDT)
- ffTK: neutral pyruvate group and charged pyruvate group at beta-D-mannose Ern Ong (Wed Jul 26 2017 - 01:37:37 CDT)
- mol pdbload failing Mike McCallum (Tue Jul 25 2017 - 23:40:14 CDT)
- how draw color bar? Arham Amouie (Mon Jul 24 2017 - 09:35:18 CDT)
- fftk - MM/QM distances not converging Kitzmiller, Nate (Sat Jul 22 2017 - 23:44:30 CDT)
- fftk - MM/QM distances not converging McCullough, Scott (Sat Jul 22 2017 - 15:36:35 CDT)
- VMD Error in Mac OSX Janakiraman Balachandran (Fri Jul 21 2017 - 13:14:22 CDT)
- Re: VMD Error in Mac OSX John Stone (Fri Jul 21 2017 - 13:58:50 CDT)
- Re: VMD Error in Mac OSX Janakiraman Balachandran (Fri Jul 21 2017 - 14:06:02 CDT)
- Re: VMD Error in Mac OSX John Stone (Fri Jul 21 2017 - 14:11:12 CDT)
- Re: VMD Error in Mac OSX Janakiraman Balachandran (Fri Jul 21 2017 - 14:17:35 CDT)
- Re: VMD Error in Mac OSX John Stone (Fri Jul 21 2017 - 14:20:07 CDT)
- Re: VMD Error in Mac OSX Janakiraman Balachandran (Fri Jul 21 2017 - 14:32:10 CDT)
- Re: VMD Error in Mac OSX John Stone (Fri Jul 21 2017 - 14:38:48 CDT)
- Re: VMD Error in Mac OSX Janakiraman Balachandran (Fri Jul 21 2017 - 14:06:02 CDT)
- Re: VMD Error in Mac OSX John Stone (Fri Jul 21 2017 - 13:58:50 CDT)
- Building HMMM using patch files Arthur Vale (Thu Jul 20 2017 - 15:19:54 CDT)
- Re: Building HMMM using patch files Vermaas, Joshua (Thu Jul 20 2017 - 16:35:15 CDT)
- RE: Building HMMM using patch files Arthur Vale (Thu Jul 20 2017 - 17:13:41 CDT)
- RE: Building HMMM using patch files Arthur Vale (Thu Jul 20 2017 - 21:32:45 CDT)
- Re: Building HMMM using patch files Vermaas, Joshua (Fri Jul 21 2017 - 17:00:38 CDT)
- RE: Building HMMM using patch files Arthur Vale (Sun Jul 30 2017 - 14:14:17 CDT)
- Re: Building HMMM using patch files Vermaas, Joshua (Mon Jul 31 2017 - 12:57:20 CDT)
- RE: Building HMMM using patch files Arthur Vale (Tue Aug 01 2017 - 23:36:30 CDT)
- Re: Building HMMM using patch files Vermaas, Joshua (Wed Aug 02 2017 - 11:47:10 CDT)
- Re: Building HMMM using patch files Vermaas, Joshua (Wed Aug 09 2017 - 18:09:02 CDT)
- Re: Building HMMM using patch files Vermaas, Joshua (Thu Jul 20 2017 - 16:35:15 CDT)
- (no subject) Siddharth Girdhar (Thu Jul 20 2017 - 01:42:01 CDT)
- "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL Jo茫o Ribeiro (Mon Jul 17 2017 - 14:45:43 CDT)
- (no subject) sesha surya vara prasad reddy karri (Mon Jul 17 2017 - 01:16:48 CDT)
- Addforces Sourav Pal (Mon Jul 17 2017 - 01:11:55 CDT)
- (no subject) sesha surya vara prasad reddy karri (Mon Jul 17 2017 - 01:10:17 CDT)
- file.dat and file.out from AMBER Martina Devi (Sat Jul 15 2017 - 01:13:10 CDT)
- overriding predifined types for coloring sperez14_at_us.es (Wed Jul 12 2017 - 04:10:12 CDT)
- regarding the python interface of vmd Pallab Dutta (Tue Jul 11 2017 - 00:45:48 CDT)
- simulation box moves in VMD when read lammps trajectory ruiyan (Mon Jul 10 2017 - 17:34:40 CDT)
- coloring different polymers with different (random) colors Valerio Sorichetti (Mon Jul 10 2017 - 04:13:03 CDT)
- Attaching NBD label to residues mutated to cysteine in VMD Satyaki Chatterjee (Sat Jul 08 2017 - 11:41:45 CDT)
- HOLE-VMD installation Sourav Pal (Tue Jul 04 2017 - 05:31:17 CDT)
- Get empirical formula of fragment MD Simulation (Sat Jul 01 2017 - 20:12:31 CDT)
- Fragment determination MD Simulation (Sat Jul 01 2017 - 11:19:01 CDT)
- dynamic bond making/breaking formats MD Simulation (Fri Jun 30 2017 - 17:11:24 CDT)
- namd plot not showing full range of data? Olya Kravchenko (Fri Jun 30 2017 - 15:38:45 CDT)
- Re: psfgen error with "auto angles dihe patch" Ashar Malik (Thu Jun 29 2017 - 14:30:57 CDT)
- psfgen error with "auto angles dihe patch" Mary Lowe (Thu Jun 29 2017 - 13:41:08 CDT)
- color bar problem in VMD Geng (Thu Jun 29 2017 - 12:44:11 CDT)
- Running VMD on Blue Waters Jaime Guevara (Thu Jun 29 2017 - 11:09:46 CDT)
- PSF and PDB files do not show up Ghosh, Shreya (Wed Jun 28 2017 - 12:45:25 CDT)
- "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL Jo茫o Ribeiro (Tue Jun 27 2017 - 13:46:57 CDT)
- Micelle formation visualisation Prapti Lohi (Tue Jun 27 2017 - 13:29:49 CDT)
- pdb download bug Albers, Thomas (Mon Jun 26 2017 - 13:44:07 CDT)
- Re: Salt-Bridge Calculation PRITI ROY (Fri Jun 23 2017 - 02:10:40 CDT)
- pbc wrap + within VS pbwithin Hemanth Vemuri (Wed Jun 21 2017 - 14:08:08 CDT)
- convert psf to top with topotools Qinghua Liao (Wed Jun 21 2017 - 12:20:43 CDT)
- Re: convert psf to top with topotools Axel Kohlmeyer (Wed Jun 21 2017 - 13:04:40 CDT)
- Re: convert psf to top with topotools Qinghua Liao (Wed Jun 21 2017 - 16:58:52 CDT)
- Re: convert psf to top with topotools Radak, Brian K (Wed Jun 21 2017 - 17:03:23 CDT)
- Re: convert psf to top with topotools Qinghua Liao (Wed Jun 21 2017 - 17:45:11 CDT)
- Re: convert psf to top with topotools Vermaas, Joshua (Wed Jun 21 2017 - 18:02:59 CDT)
- Re: convert psf to top with topotools Qinghua Liao (Wed Jun 21 2017 - 18:21:22 CDT)
- Re: convert psf to top with topotools Qinghua Liao (Wed Jun 21 2017 - 16:58:52 CDT)
- Re: convert psf to top with topotools Vermaas, Joshua (Wed Jun 21 2017 - 13:30:42 CDT)
- Re: convert psf to top with topotools Axel Kohlmeyer (Wed Jun 21 2017 - 13:04:40 CDT)
- dihedral angles of nonpolar hydrogen in FFTK saeed amini (Sun Jun 18 2017 - 07:37:51 CDT)
- VMD display problems Seibold, Steve Allan (Fri Jun 16 2017 - 12:26:48 CDT)
- VMD display problems. Seibold, Steve Allan (Fri Jun 16 2017 - 10:33:20 CDT)
- problem of displaying simulation box ruiyan (Fri Jun 16 2017 - 10:04:30 CDT)
- NeutronRefTools ? Claire Loison (Fri Jun 16 2017 - 05:45:51 CDT)
- Tachyon Craig Amundsen (Wed Jun 14 2017 - 11:18:12 CDT)
- CG builder in script J谩nos Sz枚v茅rfi (Wed Jun 14 2017 - 03:26:06 CDT)
- Re: CG builder in script Ajasja Ljubeti膷 (Wed Jun 14 2017 - 04:42:40 CDT)
- Re: CG builder in script Fotis Baltoumas (Wed Jun 14 2017 - 04:50:49 CDT)
- Re: CG builder in script J谩nos Sz枚v茅rfi (Wed Jun 14 2017 - 04:58:06 CDT)
- Re: CG builder in script Axel Kohlmeyer (Wed Jun 14 2017 - 05:31:14 CDT)
- Re: CG builder in script J谩nos Sz枚v茅rfi (Wed Jun 14 2017 - 05:45:44 CDT)
- Re: CG builder in script J谩nos Sz枚v茅rfi (Wed Jun 14 2017 - 05:50:24 CDT)
- Re: CG builder in script Axel Kohlmeyer (Wed Jun 14 2017 - 05:53:26 CDT)
- Re: CG builder in script J谩nos Sz枚v茅rfi (Wed Jun 14 2017 - 07:16:03 CDT)
- Re: CG builder in script J谩nos Sz枚v茅rfi (Wed Jun 14 2017 - 04:58:06 CDT)
- Extract coordinates from a pdb file Roshan Shrestha (Mon Jun 12 2017 - 04:19:00 CDT)
- vmd-1.9.3 problem with nvidia driver 375 Robert Wohlhueter (Sat Jun 10 2017 - 21:06:04 CDT)
- Ignore all the errors and load severely wrong structure in XYZ format Bharat Sharma (Sat Jun 10 2017 - 09:48:06 CDT)
- VMD crashed during reading the trajectory file Sidra Rafi (Sat Jun 10 2017 - 00:34:34 CDT)
- H-bond angle Shashank Ranjan Srivastava (Thu Jun 08 2017 - 09:52:38 CDT)
- Opening GROMACS Simulation File Norfarisha Mohd Fadil (Wed Jun 07 2017 - 20:04:51 CDT)
- inorganic builder Barbault Florent (Wed Jun 07 2017 - 03:31:16 CDT)
- different hydrogen bond results for the same system Sadegh Faramarzi Ganjabad (Tue Jun 06 2017 - 14:42:33 CDT)
- different hydrogen bond results for the same system Sadegh Faramarzi Ganjabad (Mon Jun 05 2017 - 15:27:57 CDT)
- errors starting vmd 1.9.3 Robert Wohlhueter (Sun Jun 04 2017 - 12:44:43 CDT)
- Cutting and replacing in VMD Kalyan Madanapalli (Sat Jun 03 2017 - 16:26:45 CDT)
- Re: winvmd stopped working Ashar Malik (Fri Jun 02 2017 - 18:59:03 CDT)
- winvmd stopped working Fernando Bonilla Millan (Fri Jun 02 2017 - 16:40:26 CDT)
- Suggested fix for 'restore_reps' command Robert Elder (Fri Jun 02 2017 - 14:12:43 CDT)
- Three dcdplugin.c questions, and the DCD binary format. Charles McAnany (Thu Jun 01 2017 - 12:39:48 CDT)
- Average structure using multiple frame trajectory Shashank Ranjan Srivastava (Thu May 25 2017 - 05:24:07 CDT)
- vmd script running from command line J谩nos Sz枚v茅rfi (Thu May 25 2017 - 02:38:44 CDT)
- Unable to remove sudden RMSD jumps between two segments Peter Mawanga (Thu May 25 2017 - 02:13:12 CDT)
- Re: Atoms moving too fast Ashar Malik (Wed May 24 2017 - 20:49:05 CDT)
- Atoms moving too fast Pratik Narain Srivastava (Wed May 24 2017 - 14:36:45 CDT)
- MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 02:49:25 CDT)
- Re: MDFF time line ccc score Ryan McGreevy (Wed May 24 2017 - 09:16:19 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 09:42:34 CDT)
- Re: MDFF time line ccc score Ryan McGreevy (Wed May 24 2017 - 10:03:52 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 10:09:08 CDT)
- Re: MDFF time line ccc score Ryan McGreevy (Wed May 24 2017 - 10:11:47 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 10:22:24 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 10:51:52 CDT)
- Re: MDFF time line ccc score Ryan McGreevy (Wed May 24 2017 - 11:07:44 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 12:10:40 CDT)
- Re: MDFF time line ccc score Ryan McGreevy (Wed May 24 2017 - 12:21:17 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 15:47:20 CDT)
- RE: MDFF time line ccc score Karol KASZUBA (Wed May 24 2017 - 09:42:34 CDT)
- Re: MDFF time line ccc score Ryan McGreevy (Wed May 24 2017 - 09:16:19 CDT)
- Drawing hollow circles Peter Mawanga (Tue May 23 2017 - 19:02:28 CDT)
- Selection of lipids not in contact with polymer Mihaela Drenscko (Sat May 20 2017 - 18:39:32 CDT)
- Periodic Conditions for Hexagonal Membrane System Arthur Oliveira Vale (Fri May 19 2017 - 18:52:11 CDT)
- Selecting all residues based on z-axis coordinate in a protein Marko Sever (Fri May 19 2017 - 03:12:23 CDT)
- FFTK charge optimisation does not converge Siladitya Padhi (Sun May 14 2017 - 15:55:41 CDT)
- Reordering atomselection before saving trajectory Jacob D Durrant (Sat May 13 2017 - 19:28:32 CDT)
- [VMD] Measure distance between two selections The Cromicus Productions (Sat May 13 2017 - 17:33:14 CDT)
- Re: Accessing Mapped Drive Files on iMac Barry Isralewitz (Fri May 12 2017 - 12:01:17 CDT)
- CG builder for martini force field Karteek Kumar (Fri May 12 2017 - 10:37:45 CDT)
- using inorganic builder for amorphous silica Diez Fernandez, Amanda (Thu May 11 2017 - 07:35:11 CDT)
- Minimum distance between atoms within representation Dawid das (Fri May 05 2017 - 12:22:07 CDT)
- substitute one residue without rebuilding the structure? Olya Kravchenko (Thu May 04 2017 - 16:58:38 CDT)
- Re: substitute one residue without rebuilding the structure? Vermaas, Joshua (Thu May 04 2017 - 18:26:11 CDT)
- Re: substitute one residue without rebuilding the structure? Olya Kravchenko (Thu May 04 2017 - 22:00:20 CDT)
- RE: substitute one residue without rebuilding the structure? Radak, Brian K (Fri May 05 2017 - 08:54:51 CDT)
- Re: substitute one residue without rebuilding the structure? Olya Kravchenko (Fri May 05 2017 - 13:12:41 CDT)
- RE: substitute one residue without rebuilding the structure? Radak, Brian K (Fri May 05 2017 - 13:26:23 CDT)
- Re: substitute one residue without rebuilding the structure? Olya Kravchenko (Fri May 05 2017 - 13:27:39 CDT)
- Re: substitute one residue without rebuilding the structure? Olya Kravchenko (Thu May 04 2017 - 22:00:20 CDT)
- Re: substitute one residue without rebuilding the structure? Vermaas, Joshua (Thu May 04 2017 - 18:26:11 CDT)
- Finding .vmdrc in LINUX(UBUNTU) Roshan Shrestha (Sat Apr 29 2017 - 01:31:54 CDT)
- Writing velocities in lammps dump file Karteek Kumar (Thu Apr 27 2017 - 00:40:02 CDT)
- Bug in VMD 1.9.3? Arham Amouie (Wed Apr 26 2017 - 07:07:20 CDT)
- Error when find salt bridges EGIDEA PUTI DEVINA (Tue Apr 25 2017 - 22:02:16 CDT)
- NAMD developer workshop - Chicago, May 22-23, 2017 Jo茫o Ribeiro (Tue Apr 25 2017 - 07:45:59 CDT)
- Within X1 of Y but not within X2 of Y Kamps, M. (Mon Apr 24 2017 - 06:28:46 CDT)
- Visualizing volumetric data only for the small portion of a system reza vatan (Sat Apr 22 2017 - 18:03:21 CDT)
- access to molfile plugin source code Peter Schmidtke (Sat Apr 22 2017 - 16:20:52 CDT)
- Meaning of computer graphic terms Arham Amouie (Wed Apr 19 2017 - 12:33:18 CDT)
- RE: Creating 3D PDF files James Kress (Wed Apr 19 2017 - 09:06:56 CDT)
- NAMD developer workshop - Chicago, May 22-23, 2017 Jo茫o Ribeiro (Tue Apr 18 2017 - 07:45:04 CDT)
- TCBG Live Computational Biophysics Workshop Lectures Jo茫o Ribeiro (Mon Apr 17 2017 - 09:13:24 CDT)
- Re: Disable OSPRay for VMD on AMD CPU John Stone (Mon Apr 17 2017 - 07:59:29 CDT)
- Re: Behavior of TachyonLOptiXInternal Renderer Vermaas, Joshua (Thu Apr 13 2017 - 20:53:52 CDT)
- Playing trajectories using HMDs Philip Loche (Wed Apr 12 2017 - 04:48:49 CDT)
- Need help in NAMD Energy plugin jrhau lung (Tue Apr 11 2017 - 20:03:14 CDT)
- Crating 3D PDF files James Kress (Tue Apr 11 2017 - 13:36:56 CDT)
- RDF and RMSD calculation Jeams Anderson (Tue Apr 11 2017 - 04:06:48 CDT)
- ~1,5 million system Steven Neumann (Tue Apr 11 2017 - 03:51:17 CDT)
- Fwd: vmd-1 Sharav Desai (Tue Apr 11 2017 - 03:32:09 CDT)
- How to change the font size in VMD? 鞝曥垯鞓 (Tue Apr 11 2017 - 02:55:52 CDT)
- Unable to Render modified positions of labels with Tachyon Peter Mawanga (Mon Apr 10 2017 - 20:33:11 CDT)
- Unable to Render modified positions of labels with Tachyon Peter Mawanga (Mon Apr 10 2017 - 20:22:17 CDT)
- Re: how to have an array of snapshots in an image file? Arham Amouie (Mon Apr 10 2017 - 15:24:09 CDT)
- how to have an array of snapshots in an image file? Arham Amouie (Mon Apr 10 2017 - 14:55:21 CDT)
- function returned by atomselect; use global atomselect function from proc scope Eric Smoll (Mon Apr 10 2017 - 10:30:03 CDT)
- function returned by atomselect; use global atomselect function from proc scope Eric Smoll (Mon Apr 10 2017 - 10:27:23 CDT)
- TCBG Live Computational Biophysics Workshop Lectures Jo茫o Ribeiro (Mon Apr 10 2017 - 08:24:13 CDT)
- Problems of generating the psf file with a protein that has a structural calcium Guanyu Wang (Thu Apr 06 2017 - 17:46:24 CDT)
- NAMD Developer Workshop at Chicago IL, May 22-23, 2017 Jo茫o Ribeiro (Thu Apr 06 2017 - 08:18:23 CDT)
- psfgen giving wrong structure in the autopdb file Harish Srinivasan (Thu Apr 06 2017 - 01:37:29 CDT)
- (no subject) udit0000_at_gmail.com (Wed Apr 05 2017 - 09:36:00 CDT)
- Regarding membrane thickness Shashank Ranjan Srivastava (Wed Apr 05 2017 - 06:46:29 CDT)
- psfgen error with charmm36 parameters? Magnus Andersson (Wed Apr 05 2017 - 04:48:25 CDT)
- (no subject) udit0000_at_gmail.com (Tue Apr 04 2017 - 23:33:52 CDT)
- Center of Mass RMSD in a trajectory Daniela Rivas (Mon Apr 03 2017 - 02:58:54 CDT)
- Accessing tachyon optix from commandline and dat file generation Amit Gupta (Mon Apr 03 2017 - 01:41:09 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation Andrea Spitaleri (Mon Apr 03 2017 - 02:36:37 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation Amit Gupta (Mon Apr 03 2017 - 04:16:44 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation John Stone (Mon Apr 03 2017 - 09:45:35 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation Andrea Spitaleri (Tue Apr 04 2017 - 05:04:45 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation John Stone (Tue Apr 04 2017 - 15:30:20 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation Amit Gupta (Mon Apr 03 2017 - 04:16:44 CDT)
- Re: Accessing tachyon optix from commandline and dat file generation Andrea Spitaleri (Mon Apr 03 2017 - 02:36:37 CDT)
- vmdrc file not loaded when the filename is a command line argument Dimitrova, Maria (Sat Apr 01 2017 - 10:49:55 CDT)
- modify the plugin in MACOS X H. Lee (Sat Apr 01 2017 - 08:28:11 CDT)
- vicinity analysis Udit Aswal (Fri Mar 31 2017 - 02:03:59 CDT)
- (no subject) Udit Aswal (Fri Mar 31 2017 - 01:37:54 CDT)
- How to extract data from log file Monika Madhavi (Thu Mar 30 2017 - 01:21:22 CDT)
- VMD 1.9.2 crashing at startup in Mac OS X El Capitan Janakiraman Balachandran (Wed Mar 29 2017 - 08:57:41 CDT)
- video streaming Ramon Guix脿 (Wed Mar 29 2017 - 05:02:37 CDT)
- "spiral cylinders" instead of bonds when rendering with Tachyon? Brian Radak (Thu Mar 23 2017 - 14:34:16 CDT)
- Volarea command line options Ban Arn (Wed Mar 22 2017 - 14:33:37 CDT)
- Hands-On Workshop on Computational Biophysics: May 30 - June 2 in Pittsburgh, PA Jo茫o Ribeiro KS (Wed Mar 22 2017 - 10:15:41 CDT)
- Workshop on MD simulation software design Giacomo Fiorin (Tue Mar 21 2017 - 13:44:34 CDT)
- VMD 1.9.3 GLSL rendering not available on Linux cluster Install Muralikrishna Raju (Mon Mar 20 2017 - 22:25:08 CDT)
- replicating a trajectory in VMD Aman Jindal (Sun Mar 19 2017 - 06:01:28 CDT)
- measure inertia (Eigenvalues and Eigenvectors) Cardenas Lizana, Paul Antonio (Sat Mar 18 2017 - 13:30:07 CDT)
- Numerical data from electrostatic calculations horst_at_lillig.de (Fri Mar 17 2017 - 02:53:37 CDT)
- VMD and latest XQuartz update Ryan P. Steele (Thu Mar 16 2017 - 14:50:53 CDT)
- Re: VMD and latest XQuartz update John Stone (Thu Mar 16 2017 - 14:56:10 CDT)
- Re: VMD and latest XQuartz update Ryan P. Steele (Thu Mar 16 2017 - 15:28:19 CDT)
- Re: VMD and latest XQuartz update John Stone (Fri Mar 17 2017 - 14:25:31 CDT)
- Re: VMD and latest XQuartz update Ryan P Steele (Mon Mar 20 2017 - 23:20:27 CDT)
- Re: VMD and latest XQuartz update Thomas Griffiths (Mon Apr 10 2017 - 01:03:46 CDT)
- Re: VMD and latest XQuartz update Thomas Griffiths (Tue Apr 11 2017 - 02:07:46 CDT)
- Re: VMD and latest XQuartz update John Stone (Tue Apr 11 2017 - 03:00:45 CDT)
- Re: VMD and latest XQuartz update Bennion, Brian (Tue Apr 11 2017 - 09:56:53 CDT)
- Re: VMD and latest XQuartz update Ryan P. Steele (Thu Mar 16 2017 - 15:28:19 CDT)
- Re: VMD and latest XQuartz update John Stone (Thu Mar 16 2017 - 14:56:10 CDT)
- WG: zoom and focus on on a selection Daniel M枚ller (Tue Mar 14 2017 - 15:14:50 CDT)
- zoom and focus on on a selection Thomas Evangelidis (Tue Mar 14 2017 - 07:35:00 CDT)
- Restart after press Finish in QwikMD simulation jrhau lung (Tue Mar 14 2017 - 04:08:04 CDT)
- Timeline / Sequence View not functional Vlad Cojocaru (Mon Mar 13 2017 - 08:11:17 CDT)
- Importing Surface Mesh into VMD? Daniel Brooks (Mon Mar 13 2017 - 02:22:18 CDT)
- VMD and cuda 7.5 Hamid (Sat Mar 11 2017 - 04:33:51 CST)
- Problem with CG Builder/AutoPSF extension in VMD Emiliano Fratini (Thu Mar 09 2017 - 05:34:41 CST)
- PSFGEN error "failed to parse autogenerate statement" Chitrak Gupta (Wed Mar 08 2017 - 13:45:28 CST)
- Problem with N-glycosylation Daniela Rivas (Tue Mar 07 2017 - 20:40:19 CST)
- Re: Usage of the Orient package sunyeping (Tue Mar 07 2017 - 19:49:31 CST)
- Localhost port 3000 error Kanishk Jain (Tue Mar 07 2017 - 17:08:09 CST)
- Usage of the Orient package sunyeping (Mon Mar 06 2017 - 21:32:25 CST)
- Body elene shopova (Mon Mar 06 2017 - 11:18:40 CST)
- scale angstroms to pixels (or mm, inches, etc.) Lachele Foley (Mon Mar 06 2017 - 07:55:01 CST)
- Workshop on Computational Biophysics, Urbana, IL: Application Deadline March 10th Jo茫o Ribeiro KS (Sat Mar 04 2017 - 15:55:57 CST)
- convert .mrc map to .dx format Karol KASZUBA (Fri Mar 03 2017 - 09:51:29 CST)
- Zoom-to-fit before rendering Stefan Doerr (Thu Mar 02 2017 - 04:30:10 CST)
- Center camera rotation on a molid TUBIANA Thibault CNRS (Thu Mar 02 2017 - 04:00:03 CST)
- Building NAMD 2.12 from Source with IB and CUDA Greipel.Joachim_at_mh-hannover.de (Thu Mar 02 2017 - 02:57:01 CST)
- creating the center of mass pdb file Mehdi Bagherpour (Tue Feb 28 2017 - 13:22:23 CST)
- Fwd: Termination when using QuickSurf, libGL no version info, and CUDA Error in start up Dallas Warren (Mon Feb 27 2017 - 18:32:54 CST)
- Re: Fwd: Termination when using QuickSurf, libGL no version info, and CUDA Error in start up John Stone (Tue Feb 28 2017 - 12:53:46 CST)
- Re: Fwd: Termination when using QuickSurf, libGL no version info, and CUDA Error in start up Dallas Warren (Tue Feb 28 2017 - 19:08:46 CST)
- Re: Fwd: Termination when using QuickSurf, libGL no version info, and CUDA Error in start up Dallas Warren (Mon Mar 06 2017 - 21:09:54 CST)
- placing text labels near atoms using draw text Garold Murdachaew (Mon Feb 27 2017 - 10:35:04 CST)
- Re: How to remove rmsd spikes due to PB Ashar Malik (Sat Feb 25 2017 - 14:43:39 CST)
- How to remove rmsd spikes due to PB zoran matovic (Sat Feb 25 2017 - 13:40:12 CST)
- VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. yjcoshc_at_gmail.com (Fri Feb 24 2017 - 20:54:27 CST)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. John Stone (Tue Feb 28 2017 - 12:57:57 CST)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. yjcoshc_at_gmail.com (Tue Feb 28 2017 - 22:11:21 CST)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. John Stone (Thu Mar 02 2017 - 14:25:30 CST)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. yjcoshc_at_gmail.com (Thu Mar 02 2017 - 19:36:47 CST)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. yjcoshc (Sat Apr 29 2017 - 06:43:53 CDT)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. John Stone (Wed May 31 2017 - 16:33:16 CDT)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. yjcoshc_at_gmail.com (Thu Jun 01 2017 - 09:58:42 CDT)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. yjcoshc_at_gmail.com (Tue Feb 28 2017 - 22:11:21 CST)
- Re: VMD 1.9.3 crashes during loading GROMACS trr trajectory in linux. John Stone (Tue Feb 28 2017 - 12:57:57 CST)
- NAMD developer workshop at Chicago IL, May 22-23, 2017 Jo茫o Ribeiro KS (Fri Feb 24 2017 - 19:23:08 CST)
- Issue viewing GRO file in VMD Sanim Rahman (Fri Feb 24 2017 - 17:44:31 CST)
- ReadVarXYZ and measure gofr Tyler Westland (Fri Feb 24 2017 - 14:47:15 CST)
- hbonds with noncommon atom names Sadegh Faramarzi Ganjabad (Thu Feb 23 2017 - 23:52:24 CST)
- remote visualization Thomas C. Bishop (Wed Feb 22 2017 - 17:38:45 CST)
- trr generated by catdcd Stefano Guglielmo (Mon Feb 20 2017 - 19:25:11 CST)
- MSD calculation Nikhil Maroli (Mon Feb 20 2017 - 06:39:44 CST)
- Charge Optimization error Lakshmikanth Srinivasamurthy (Sun Feb 19 2017 - 03:13:35 CST)
- QMtool gaussian 09 MARIA JOSE ALIAGA GOSALVEZ (Sat Feb 18 2017 - 14:34:23 CST)
- Hands-On Workshop on Computational Biophysics: April 17-21 in Urbana, IL Jo茫o Ribeiro KS (Fri Feb 17 2017 - 16:57:08 CST)
- measure surface usage Albers, Thomas (Fri Feb 17 2017 - 14:47:07 CST)
- Delete water 5 Angstrom away of ligand konda003 . (Fri Feb 17 2017 - 08:34:24 CST)
- Simulation the binding affinity between DNA or RNA with non-natural nucleic acid acid jrhau lung (Thu Feb 16 2017 - 02:59:41 CST)
- (no subject) MARIA JOSE ALIAGA GOSALVEZ (Tue Feb 14 2017 - 14:02:28 CST)
- incorrect bonds Statics Eng (Tue Feb 14 2017 - 06:01:12 CST)
- How to choose CVs along DNA axis? Mehdi Bagherpour (Mon Feb 13 2017 - 11:32:53 CST)
- Binding affinity simulation of a mutation structure. jrhau lung (Sun Feb 12 2017 - 19:14:28 CST)
- chain seprating and jumping because of periodic bound sunyeping (Sat Feb 11 2017 - 13:45:42 CST)
- How to set the representations in batch in VMD? sunyeping (Sat Feb 11 2017 - 13:06:18 CST)
- VolMap data format Karl Decker (Fri Feb 10 2017 - 14:32:22 CST)
- Error Running NAMD Danu Fajar (Thu Feb 09 2017 - 22:53:46 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Fri Feb 10 2017 - 07:23:23 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Fri Feb 10 2017 - 09:52:29 CST)
- Re: Error Running NAMD Danu Fajar (Fri Feb 10 2017 - 13:31:38 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Fri Feb 10 2017 - 13:42:33 CST)
- Re: Error Running NAMD Danu Fajar (Sat Feb 11 2017 - 12:03:17 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Thu Feb 23 2017 - 11:52:13 CST)
- Re: Error Running NAMD Danu Fajar (Sun Feb 26 2017 - 10:50:23 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Tue Feb 28 2017 - 07:56:40 CST)
- Re: Error Running NAMD Danu Fajar (Thu Mar 02 2017 - 08:54:48 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Fri Feb 10 2017 - 09:52:29 CST)
- Re: Error Running NAMD Jo茫o Ribeiro KS (Fri Feb 10 2017 - 07:23:23 CST)
- patching residues Lara rajam (Thu Feb 09 2017 - 15:07:11 CST)
- is there any plugin or software to combine PMF trajectory with VMD image? Olya Kravchenko (Wed Feb 08 2017 - 11:11:16 CST)
- memory sharing in VMD Karl Decker (Tue Feb 07 2017 - 14:13:06 CST)
- Using variables inside Atomselect Udaya Dahal (Tue Feb 07 2017 - 07:20:08 CST)
- Topo file Statics Eng (Tue Feb 07 2017 - 06:39:33 CST)
- VMD animating spindensity Negar Ashari Astani (Tue Feb 07 2017 - 04:28:31 CST)
- vmd cannot display cartoon/ribbon representations of part of a protein in gro/trr format 瀛欎笟骞 (Sun Feb 05 2017 - 08:11:19 CST)
- vmd cannot display part of the protein in gromacs gro/trr file format sunyeping (Fri Feb 03 2017 - 02:44:20 CST)
- Re: vmd cannot display part of the protein in gromacs gro/trr file format John Stone (Fri Feb 03 2017 - 10:31:45 CST)
- Re: vmd cannot display part of the protein in gromacs gro/trr file format sunyeping (Sun Feb 05 2017 - 08:16:49 CST)
- Re: Re: vmd cannot display part of the protein in gromacs gro/trr file format John Stone (Wed Feb 08 2017 - 15:38:45 CST)
- Re: Re: vmd cannot display part of the protein in gromacs gro/trr file format sunyeping (Sat Feb 11 2017 - 07:23:39 CST)
- Re: Re: Re: vmd cannot display part of the protein in gromacs gro/trr file format John Stone (Mon Feb 13 2017 - 14:25:15 CST)
- Re: vmd cannot display part of the protein in gromacs gro/trr file format sunyeping (Sun Feb 05 2017 - 08:16:49 CST)
- Re: vmd cannot display part of the protein in gromacs gro/trr file format John Stone (Fri Feb 03 2017 - 10:31:45 CST)
- Interacting H-bond between two dimer PRITI ROY (Thu Feb 02 2017 - 23:58:56 CST)
- .gro files written with python script not displayed until strange modification Benjamin Joseph Coscia (Thu Feb 02 2017 - 14:51:44 CST)
- atomsel : setbonds: Need one bondlist for each selected atom leila karami (Wed Feb 01 2017 - 01:44:26 CST)
- AW: SASA area Norman Geist (Wed Feb 01 2017 - 01:44:51 CST)
- metadynamics potential vs pmf Stefano Guglielmo (Tue Jan 31 2017 - 20:02:51 CST)
- RMSF calculation with reference structure update Dmitry Suplatov (Tue Jan 31 2017 - 11:32:04 CST)
- Amber visualization problem Albert (Tue Jan 31 2017 - 10:09:50 CST)
- AW: SASA area Norman Geist (Tue Jan 31 2017 - 09:35:48 CST)
- SASA area Anna Battisti (Tue Jan 31 2017 - 01:28:16 CST)
- charmm36 vs charmm27/22 topology Neeraj Agrawal (Mon Jan 30 2017 - 11:29:19 CST)
- colvars module Stefano Guglielmo (Sun Jan 29 2017 - 17:40:53 CST)
- reading rst7 files generated by cpptraj Vlad Cojocaru (Fri Jan 27 2017 - 04:28:30 CST)
- Running out of memory due to multiple mol addfile's (?) Alexander Balaeff (Fri Jan 27 2017 - 00:03:15 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Ashar Malik (Fri Jan 27 2017 - 02:01:13 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Alexander Balaeff (Fri Jan 27 2017 - 12:59:17 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Alexander Balaeff (Fri Jan 27 2017 - 13:07:23 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Vermaas, Joshua (Fri Jan 27 2017 - 14:36:34 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Alexander Balaeff (Wed Mar 01 2017 - 13:42:37 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Alexander Balaeff (Fri Jan 27 2017 - 12:59:17 CST)
- Re: Running out of memory due to multiple mol addfile's (?) Ashar Malik (Fri Jan 27 2017 - 02:01:13 CST)
- Optimization of torsion angles with fftk, large force constant ABEL Stephane (Thu Jan 26 2017 - 03:37:43 CST)
- HBonds Plugin - Hbonds criteria #ANG YUN MEI ELISA# (Tue Jan 24 2017 - 18:24:49 CST)
- Commandline file processed before vmdrc read in Stefan Kuczera (Tue Jan 24 2017 - 09:47:49 CST)
- Viewing Isosurface from g_spatial on VMD Badmos, Sakiru (Mon Jan 23 2017 - 13:04:44 CST)
- RDFs Calculation incorporating PBC Mehta, Rushita (Mon Jan 23 2017 - 05:58:53 CST)
- minimizing each structure of a DCD file saeed amini (Sun Jan 22 2017 - 06:43:24 CST)
- ffTK Hessian calculation error outputting to Gaussian input Sze May Yee (Fri Jan 20 2017 - 05:02:22 CST)
- Feature request: "Apply to all molecules" option in graphical representation window Bryan Roessler (Wed Jan 18 2017 - 17:06:48 CST)
- psf for a DNA chain saeed amini (Wed Jan 18 2017 - 06:44:21 CST)
- writegmxtop error invalid command name "..." Igor Ariz (Tue Jan 17 2017 - 03:30:36 CST)
- atom selection in cv module of VMD Bin Sun (Sun Jan 15 2017 - 18:36:22 CST)
- working on VMD for Analysis.. maria khan (Sat Jan 14 2017 - 13:55:01 CST)
- working with VMD maria khan (Sat Jan 14 2017 - 07:50:04 CST)
- working with VMD maria khan (Sat Jan 14 2017 - 07:43:43 CST)
- results analysis by VMD. maria khan (Sat Jan 14 2017 - 05:11:04 CST)
- How to read Scattered Volume Data hirak chatterjee (Fri Jan 13 2017 - 23:52:28 CST)
- Rendering images like those shown on VMD home page Amit Gupta (Fri Jan 13 2017 - 22:57:34 CST)
- Re: Rendering images like those shown on VMD home page John Stone (Fri Jan 13 2017 - 23:18:08 CST)
- Re: Rendering images like those shown on VMD home page Amit Gupta (Sat Jan 14 2017 - 00:32:03 CST)
- Re: Rendering images like those shown on VMD home page John Stone (Sat Jan 14 2017 - 00:49:55 CST)
- Re: Rendering images like those shown on VMD home page Amit Gupta (Sat Jan 14 2017 - 02:58:58 CST)
- Re: Rendering images like those shown on VMD home page Amit Gupta (Sat Jan 14 2017 - 07:30:10 CST)
- Re: Rendering images like those shown on VMD home page John Stone (Sun Jan 15 2017 - 02:49:30 CST)
- Re: Rendering images like those shown on VMD home page Amit Gupta (Sat Jan 14 2017 - 00:32:03 CST)
- Re: Rendering images like those shown on VMD home page John Stone (Fri Jan 13 2017 - 23:18:08 CST)
- Analyzing results of simulation done by gromacs maria khan (Fri Jan 13 2017 - 15:44:31 CST)
- Polymer helix wrapping on the outer surface of carbon nanotube konda003 . (Fri Jan 13 2017 - 14:32:43 CST)
- Re: VMD very slow on DELL workstation with Quadro M4000 Vlad Cojocaru (Thu Jan 12 2017 - 09:02:31 CST)
- VMD very slow on DELL workstation with Quadro M4000 Vlad Cojocaru (Thu Jan 12 2017 - 07:40:45 CST)
- isosurface stays gray after using "surface_color" command and "rebuild" Fux Samuel (ID SIS) (Wed Jan 11 2017 - 07:18:39 CST)
- Quad buffered stereo from Quadro M4000 to HDMI monitor Vlad Cojocaru (Wed Jan 11 2017 - 04:15:32 CST)
- compiling VMD 1.9.3 with OSPRay support Vlad Cojocaru (Tue Jan 10 2017 - 07:25:10 CST)
- Re: compiling VMD 1.9.3 with OSPRay support John Stone (Tue Jan 10 2017 - 07:59:38 CST)
- Re: compiling VMD 1.9.3 with OSPRay support Vlad Cojocaru (Tue Jan 10 2017 - 08:32:55 CST)
- Re: compiling VMD 1.9.3 with OSPRay support Vlad Cojocaru (Tue Jan 10 2017 - 08:41:35 CST)
- Re: compiling VMD 1.9.3 with OSPRay support John Stone (Tue Jan 10 2017 - 08:44:15 CST)
- Re: compiling VMD 1.9.3 with OSPRay support Vlad Cojocaru (Tue Jan 10 2017 - 08:51:33 CST)
- Re: compiling VMD 1.9.3 with OSPRay support Axel Kohlmeyer (Tue Jan 10 2017 - 08:54:18 CST)
- Re: compiling VMD 1.9.3 with OSPRay support Vlad Cojocaru (Tue Jan 10 2017 - 08:32:55 CST)
- Re: compiling VMD 1.9.3 with OSPRay support John Stone (Tue Jan 10 2017 - 07:59:38 CST)
- why vmd cannot load the dcd trajectory? sunyeping (Tue Jan 10 2017 - 01:06:08 CST)
- AW: why vmd cannot load the dcd trajectory? Norman Geist (Tue Jan 10 2017 - 02:43:17 CST)
- Re: AW: why vmd cannot load the dcd trajectory? sunyeping (Tue Jan 10 2017 - 03:03:47 CST)
- Re: AW: why vmd cannot load the dcd trajectory? sunyeping (Tue Jan 10 2017 - 04:25:41 CST)
- Re: AW: why vmd cannot load the dcd trajectory? sunyeping (Tue Jan 10 2017 - 04:47:42 CST)
- Re: why vmd cannot load the dcd trajectory? John Stone (Tue Jan 10 2017 - 07:23:29 CST)
- AW: why vmd cannot load the dcd trajectory? Norman Geist (Tue Jan 10 2017 - 02:43:17 CST)
- pbc unwrap doesn't work sunyeping (Sun Jan 08 2017 - 07:44:14 CST)
- water permeation across the channel Nikhil Maroli (Sun Jan 08 2017 - 06:56:48 CST)
- orient - winVMD Stefano Guglielmo (Sat Jan 07 2017 - 05:33:49 CST)
- FFTK for diazonium-modified tyrosine #YEO JINGJIE# (Fri Jan 06 2017 - 12:52:40 CST)
- Re: FFTK for diazonium-modified tyrosine JC Gumbart (Fri Jan 06 2017 - 14:52:50 CST)
- Re: FFTK for diazonium-modified tyrosine #YEO JINGJIE# (Fri Jan 06 2017 - 15:47:00 CST)
- Re: FFTK for diazonium-modified tyrosine JC Gumbart (Sat Jan 07 2017 - 16:36:01 CST)
- Re: FFTK for diazonium-modified tyrosine #YEO JINGJIE# (Sun Jan 08 2017 - 11:24:40 CST)
- Re: FFTK for diazonium-modified tyrosine JC Gumbart (Sun Jan 08 2017 - 23:08:15 CST)
- Re: FFTK for diazonium-modified tyrosine #YEO JINGJIE# (Thu Jan 12 2017 - 09:47:40 CST)
- Re: FFTK for diazonium-modified tyrosine #YEO JINGJIE# (Fri Jan 06 2017 - 15:47:00 CST)
- Re: FFTK for diazonium-modified tyrosine JC Gumbart (Fri Jan 06 2017 - 14:52:50 CST)
- reading big xtc file Smolin, Nikolai (Thu Jan 05 2017 - 15:58:26 CST)
- DNA .dcd file analysis brataraj ghosh (Thu Jan 05 2017 - 07:33:07 CST)
- veldcd file fatehi_at_eng.uk.ac.ir (Thu Jan 05 2017 - 02:52:29 CST)
- autoionize plugin parsing error (vmd 1.9.3 ) Wang, Steven (Wed Jan 04 2017 - 16:57:19 CST)
- Re: autoionize plugin parsing error (vmd 1.9.3 ) Peter Freddolino (Wed Jan 04 2017 - 20:01:57 CST)
- topotools readlammpsdata redefining xyz coordinates? matt wessel (Wed Jan 04 2017 - 16:32:11 CST)
- plug-in for DNA .dcd brataraj ghosh (Tue Jan 03 2017 - 02:05:25 CST)
- Contacts among two sets of atoms saeed amini (Mon Jan 02 2017 - 10:19:08 CST)
- Acetone as solvent Jonasz Sowada (Sat Dec 31 2016 - 17:34:33 CST)
- [VMD] Power-spectrum calculation The Cromicus Productions (Tue Dec 27 2016 - 03:12:38 CST)
- ffTK has halted on error. The optimizer has returned an empty result, indicating an abnormal termination. Ern Ong (Mon Dec 26 2016 - 22:31:47 CST)
- Fwd: namd-l: Modifying the equilibrium distance for a specific region of carbon nanotube in the parameter file zeynab hoseyni (Mon Dec 26 2016 - 06:45:28 CST)
- Problem while using multiseq amin_at_imtech.res.in (Thu Dec 22 2016 - 08:01:57 CST)
- psf file of graphene Mohsen Farshad (Wed Dec 21 2016 - 15:16:44 CST)
- trajectory smoothing with periodic images in VMD Chris Neale (Wed Dec 21 2016 - 12:52:39 CST)
- How to determine periodicity and phase shift for ffTK dihedral parameter optimization? Ern Ong (Wed Dec 21 2016 - 03:02:05 CST)
- Automate QwikMD? Danny Xu (Tue Dec 20 2016 - 15:23:28 CST)
- AW: Draw arrows in trajectory file Norman Geist (Tue Dec 20 2016 - 07:55:37 CST)
- Fw: Draw arrows in trajectory file Amit Gupta (Tue Dec 20 2016 - 03:45:40 CST)
- Re: Fw: Draw arrows in trajectory file Ashar Malik (Tue Dec 20 2016 - 06:19:33 CST)
- Re: Fw: Draw arrows in trajectory file Amit Gupta (Tue Dec 20 2016 - 06:28:54 CST)
- Re: Fw: Draw arrows in trajectory file Ashar Malik (Tue Dec 20 2016 - 06:41:58 CST)
- Re: Fw: Draw arrows in trajectory file Amit Gupta (Tue Dec 20 2016 - 07:25:02 CST)
- Re: Fw: Draw arrows in trajectory file Ajasja Ljubeti膷 (Tue Dec 20 2016 - 08:50:20 CST)
- Re: Fw: Draw arrows in trajectory file Amit Gupta (Tue Dec 20 2016 - 09:54:03 CST)
- Re: Fw: Draw arrows in trajectory file Ajasja Ljubeti膷 (Tue Dec 20 2016 - 07:29:58 CST)
- Re: Fw: Draw arrows in trajectory file Ashar Malik (Tue Dec 20 2016 - 07:35:02 CST)
- Re: Fw: Draw arrows in trajectory file Axel Kohlmeyer (Tue Dec 20 2016 - 08:27:51 CST)
- Re: Fw: Draw arrows in trajectory file Amit Gupta (Tue Dec 20 2016 - 06:28:54 CST)
- Re: Fw: Draw arrows in trajectory file Ashar Malik (Tue Dec 20 2016 - 06:19:33 CST)
- Draw arrows in trajectory file Amit Gupta (Tue Dec 20 2016 - 00:31:18 CST)
- Atom label offset Dimitrova, Maria (Mon Dec 19 2016 - 03:12:14 CST)
- [VMD] Obtaining phonon spectrum of DNA The Cromicus Productions (Sat Dec 17 2016 - 00:00:44 CST)
- vmd1.9.23 rlwrap: No match Francesco Pietra (Fri Dec 16 2016 - 01:43:12 CST)
- Fwd: vmd1.9.23 rlwrap: No match Francesco Pietra (Fri Dec 16 2016 - 03:49:21 CST)
- Re: Fwd: vmd1.9.23 rlwrap: No match John Stone (Fri Dec 16 2016 - 14:14:50 CST)
- Re: Fwd: vmd1.9.23 rlwrap: No match Francesco Pietra (Sat Dec 17 2016 - 02:42:26 CST)
- Re: Fwd: vmd1.9.23 rlwrap: No match Chitrak Gupta (Sat Dec 17 2016 - 13:14:38 CST)
- Re: Fwd: vmd1.9.23 rlwrap: No match Strahs, Dr. Daniel Bernard (Sat Dec 17 2016 - 15:23:08 CST)
- Re: Fwd: vmd1.9.23 rlwrap: No match Strahs, Dr. Daniel Bernard (Sat Dec 17 2016 - 17:28:33 CST)
- Re: vmd1.9.23 rlwrap: No match Strahs, Dr. Daniel Bernard (Sat Dec 17 2016 - 19:06:14 CST)
- Re: vmd1.9.23 rlwrap: No match Axel Kohlmeyer (Mon Dec 19 2016 - 16:07:55 CST)
- Re: Fwd: vmd1.9.23 rlwrap: No match John Stone (Fri Dec 16 2016 - 14:14:50 CST)
- Fwd: vmd1.9.23 rlwrap: No match Francesco Pietra (Fri Dec 16 2016 - 03:49:21 CST)
- psfgen - pdbalias when using readpsf Brian Radak (Thu Dec 15 2016 - 14:28:56 CST)
- (no subject) Karl Decker (Thu Dec 15 2016 - 11:13:26 CST)
- Atom selections for measure - index sorting Brian Radak (Wed Dec 14 2016 - 15:49:03 CST)
- VMD crashing on OS X El Capitan 64 bit K. Aurelia Ball (Wed Dec 14 2016 - 15:27:35 CST)
- rlwrap: Command not found. /usr/local/lib/vmd/vmd_LINUX: Command not found. Atila Petrosian (Fri Dec 09 2016 - 13:29:11 CST)
- NAMD Check points Naeem Mahmood Ashraf (Fri Dec 09 2016 - 08:25:29 CST)
- rlwrap: Command not found. /usr/local/lib/vmd/vmd_LINUX: Command not found. Atila Petrosian (Fri Dec 09 2016 - 01:49:42 CST)
- Unable to set coordinates in pdb - AutoPSF Harish Srinivasan (Thu Dec 08 2016 - 21:10:50 CST)
- Points of interaction in DNA linked proteins Roshan Shrestha (Thu Dec 08 2016 - 20:46:04 CST)
- Trying to Use AutoPSF on Hundreds of pdb Files Eric A Brenner (Thu Dec 08 2016 - 17:27:58 CST)
- geometry optimization with SQM M.H. Taheri (Thu Dec 08 2016 - 10:43:29 CST)
- Delete the residue and reassign the residue numbers Karteek Kumar (Wed Dec 07 2016 - 01:23:53 CST)
- Use of CUDA with AMD GPU Harish Srinivasan (Tue Dec 06 2016 - 22:59:44 CST)
- OpenGL Display not working spandu K (Tue Dec 06 2016 - 22:02:16 CST)
- VMD HBonds plugin Ern Ong (Tue Dec 06 2016 - 21:38:26 CST)
- Re: VMD HBonds plugin Karteek Kumar (Tue Dec 06 2016 - 22:07:46 CST)
- RE: VMD HBonds plugin Ern Ong (Tue Dec 06 2016 - 22:17:45 CST)
- RE: VMD HBonds plugin Karteek Kumar (Tue Dec 06 2016 - 22:23:44 CST)
- RE: VMD HBonds plugin Ern Ong (Tue Dec 06 2016 - 22:26:37 CST)
- Re: VMD HBonds plugin JC Gumbart (Tue Dec 06 2016 - 23:54:08 CST)
- RE: VMD HBonds plugin Ern Ong (Wed Dec 07 2016 - 00:16:32 CST)
- Re: VMD HBonds plugin JC Gumbart (Thu Dec 08 2016 - 17:01:17 CST)
- RE: VMD HBonds plugin Ern Ong (Tue Dec 06 2016 - 22:17:45 CST)
- Re: VMD HBonds plugin Karteek Kumar (Tue Dec 06 2016 - 22:07:46 CST)
- Invalid repid? Ignacio Fern谩ndez Galv谩n (Tue Dec 06 2016 - 11:49:47 CST)
- Reordering atom numbers on a XYZ file Alexandre Barrozo (Mon Dec 05 2016 - 18:39:01 CST)
- change_tkconsole_color_of_background_and_foreground Panagiotis Lagarias (Sun Dec 04 2016 - 04:48:07 CST)
- AMBER trajectory visualization James Kress (Sat Dec 03 2016 - 20:33:16 CST)
- Distribute evenly n-molecules at m-angstroem from protein surface Ebert Maximilian (Fri Dec 02 2016 - 21:55:50 CST)
- Re: chlorine atom: Cl or CL ? Denilson F. Oliveira (Fri Dec 02 2016 - 12:03:00 CST)
- Capture query data Eric Smoll (Fri Dec 02 2016 - 06:20:52 CST)
- (no subject) Denilson F. Oliveira (Fri Dec 02 2016 - 05:51:38 CST)
- VMD 1.9.3 on 64-bit macOS FX (Fri Dec 02 2016 - 05:25:07 CST)
- XYZ Bashir (Thu Dec 01 2016 - 10:52:03 CST)
- Setting user field for time varying parameters? Brian Radak (Thu Dec 01 2016 - 14:05:28 CST)
- CUDA acceleration for Tachyon rendering? Eiros Zamora, Juan (Thu Dec 01 2016 - 13:41:59 CST)
- VMD 1.9.3 released! John Stone (Thu Dec 01 2016 - 01:30:55 CST)
- Superimpose Wong Li Zhe (Wed Nov 30 2016 - 23:53:25 CST)
- OpenGL spandu K (Tue Nov 29 2016 - 16:59:42 CST)
- qwikmd, some dropdown menus missing Stefan Boresch (Mon Nov 28 2016 - 04:35:31 CST)
- error during the Gaussian optimization of the Water interaction in fftk Ghazaleh Zamani Maimian (Fri Nov 25 2016 - 03:25:42 CST)
- Close contacts upon solvation of XYZ file. Dawid das (Thu Nov 24 2016 - 10:30:50 CST)
- Superimpose Models Wong Li Zhe (Wed Nov 23 2016 - 23:37:45 CST)
- VMD problems on Linux Cinnamon Mint (Sarah) Madaras Erzs茅bet (Wed Nov 23 2016 - 16:00:00 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) John Stone (Wed Nov 23 2016 - 16:16:32 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) Madaras Erzs茅bet (Thu Nov 24 2016 - 06:42:09 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) John Stone (Thu Nov 24 2016 - 09:37:40 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) Madaras Erzs茅bet (Thu Nov 24 2016 - 10:07:13 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) John Stone (Thu Nov 24 2016 - 12:13:20 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) Madaras Erzs茅bet (Fri Nov 25 2016 - 02:12:59 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) John Stone (Sun Nov 27 2016 - 14:13:36 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) Madaras Erzs茅bet (Thu Nov 24 2016 - 06:42:09 CST)
- Re: VMD problems on Linux Cinnamon Mint (Sarah) John Stone (Wed Nov 23 2016 - 16:16:32 CST)
- vmd installation Archana Sonawani-Jagtap (Wed Nov 23 2016 - 01:34:45 CST)
- Re: vmd installation John Stone (Wed Nov 23 2016 - 01:44:00 CST)
- Re: vmd installation Archana Sonawani-Jagtap (Thu Nov 24 2016 - 01:12:42 CST)
- Re: vmd installation John Stone (Thu Nov 24 2016 - 01:32:23 CST)
- Re: vmd installation Archana Sonawani-Jagtap (Thu Nov 24 2016 - 02:56:44 CST)
- Re: vmd installation John Stone (Thu Nov 24 2016 - 09:48:00 CST)
- Re: vmd installation Archana Sonawani-Jagtap (Fri Nov 25 2016 - 07:02:34 CST)
- Re: vmd installation Abhishek TYAGI (Thu Nov 24 2016 - 09:34:11 CST)
- Re: vmd installation Archana Sonawani-Jagtap (Thu Nov 24 2016 - 01:12:42 CST)
- Re: vmd installation John Stone (Wed Nov 23 2016 - 01:44:00 CST)
- X3D render NewRibbons only in blue Jean Richelle (Wed Nov 23 2016 - 00:19:29 CST)
- GPU rendering of molecular orbitals Matt Watkins (Tue Nov 22 2016 - 15:03:38 CST)
- how to find vander waal interactions in vmd? Seera Suryanarayana (Tue Nov 22 2016 - 05:52:49 CST)
- error loading PDB Anna Lohning (Tue Nov 22 2016 - 00:56:00 CST)
- GPU conf file Naeem Mahmood Ashraf (Sun Nov 20 2016 - 02:18:43 CST)
- Change browsing directory in mac Estefania Gonzalez Solveyra (Fri Nov 18 2016 - 11:31:28 CST)
- What is the reasonable GPU usage when running simulation in VMD? jrhau lung (Wed Nov 16 2016 - 23:58:37 CST)
- Hands-On Workshop on Integrative Modeling and Simulations Jodi Ann Hadden (Wed Nov 16 2016 - 11:28:03 CST)
- Fast PBC wrapping in VMD J茅r么me H茅nin (Wed Nov 16 2016 - 07:54:39 CST)
- which water models are inbult in namd? can I use SPCE if yes how? Raviteja Kurapati (Wed Nov 16 2016 - 06:18:33 CST)
- exact number of solvent molecule in simulation box Raviteja Kurapati (Tue Nov 15 2016 - 08:20:00 CST)
- VMD and Spacenavigator in OSX Fernando Vallejos-Burgos (Sun Nov 13 2016 - 18:45:27 CST)
- ffTK: How to determine the optimized bond and angle parameters Ern Ong (Sun Nov 13 2016 - 02:43:12 CST)
- Re: ffTK: How to determine the optimized bond and angle parameters JC Gumbart (Mon Nov 14 2016 - 23:20:09 CST)
- PhD position available Ashar Malik (Sat Nov 12 2016 - 19:17:08 CST)
- Location of 'mol bondsrecalc' in source code Dhritiman Talukdar (Sat Nov 12 2016 - 00:05:08 CST)
- Rendering with Tachyon GPU enabled (TachyonLOptiXInternal) with options Ben Lowe (Fri Nov 11 2016 - 11:32:47 CST)
- Re: Fwd: Compile / Configure VMD with the Oculus Rift DK2 John Stone (Fri Nov 11 2016 - 10:03:12 CST)
- Problem of compiling VMD with options Le Liu (Wed Nov 09 2016 - 13:41:00 CST)
- Limits of the VMD Visualisation Jan Janssen (Wed Nov 09 2016 - 10:59:56 CST)
- MD movie making of fluent movements Kevin C Chan (Fri Nov 04 2016 - 05:26:21 CDT)
- 3D projection of vmd window Cyril Bauvais (Thu Nov 03 2016 - 18:18:50 CDT)
- Rotate molecular system without rotating objects added with the graphics command Eric Smoll (Thu Nov 03 2016 - 17:07:14 CDT)
- Fwd: Research Position at Acellera, Barcelona Jo茫o M. Damas (Thu Nov 03 2016 - 08:26:49 CDT)
- Compile / Configure VMD with the Oculus Rift DK2 Jan Janssen (Thu Nov 03 2016 - 02:42:43 CDT)
- Tachyon Render and MacOS segfault Issue Ashley Bennett (Wed Nov 02 2016 - 16:39:20 CDT)
- Remembering Klaus Schulten Thomas C. Bishop (Tue Nov 01 2016 - 09:33:31 CDT)
- FFTK measure bond error Eisenhart, Andrew (eisenhaw) (Mon Oct 31 2016 - 13:15:24 CDT)
- Re: FFTK measure bond error JC Gumbart (Mon Oct 31 2016 - 21:38:12 CDT)
- Re: FFTK measure bond error Mayne, Christopher G (Tue Nov 01 2016 - 10:45:28 CDT)
- Re: FFTK measure bond error JC Gumbart (Tue Nov 01 2016 - 14:39:40 CDT)
- Re: FFTK measure bond error Eisenhart, Andrew (eisenhaw) (Wed Nov 02 2016 - 11:27:20 CDT)
- Re: FFTK measure bond error JC Gumbart (Sat Nov 05 2016 - 18:30:33 CDT)
- Re: FFTK measure bond error Eisenhart, Andrew (eisenhaw) (Mon Nov 07 2016 - 13:33:39 CST)
- Re: FFTK measure bond error Mayne, Christopher G (Tue Nov 01 2016 - 10:45:28 CDT)
- Re: FFTK measure bond error JC Gumbart (Mon Oct 31 2016 - 21:38:12 CDT)
- VMD 1.9.3 beta 4 posted for download... John Stone (Sat Oct 29 2016 - 00:31:18 CDT)
- The new molecule file browser M K (Fri Oct 28 2016 - 20:51:59 CDT)
- Error connecting to localhost on port 3000 and IMD connection ended unexpectedly; connection terminated. jrhau lung (Thu Oct 27 2016 - 05:05:38 CDT)
- Re: Error connecting to localhost on port 3000 and IMD connection ended unexpectedly; connection terminated. jrhau lung (Thu Oct 27 2016 - 06:19:56 CDT)
- AW: Error connecting to localhost on port 3000 and IMD connection ended unexpectedly; connection terminated. Norman Geist (Thu Oct 27 2016 - 07:50:51 CDT)
- VMDFORCECPUCOUNT csu1505110121_at_163.com (Wed Oct 26 2016 - 22:47:42 CDT)
- Zinc ion visualization from Amber trajectory Aditya Padhi (Tue Oct 25 2016 - 19:44:12 CDT)
- Two open positions related to molecular visualization developments Marc Baaden (Tue Oct 25 2016 - 11:19:23 CDT)
- MDFF using Martini Steven Neumann (Thu Oct 20 2016 - 21:07:37 CDT)
- problem with molfacture plugin 1.3 Raviteja Kurapati (Thu Oct 20 2016 - 07:27:34 CDT)
- OptiX AO rendering Parker de Waal (Wed Oct 19 2016 - 11:50:39 CDT)
- Problem with Autopsf tool of vmd Life Sciences Inc (Wed Oct 19 2016 - 11:13:07 CDT)
- Calculate angles using fit_angle.tcl amin_at_imtech.res.in (Sat Oct 15 2016 - 03:25:48 CDT)
- for surface area calculation Abhishek TYAGI (Fri Oct 14 2016 - 08:36:56 CDT)
- selection atoms depending on bonding, selection of 'new' molecules Francesca L鴑stad Bleken (Fri Oct 14 2016 - 05:39:58 CDT)
- selection atoms depending on bonding, selection of 'new' molecules Francesca L鴑stad Bleken (Fri Oct 14 2016 - 04:30:56 CDT)
- aligning molecules with modes from ProDy L. Signorile (Thu Oct 13 2016 - 06:32:24 CDT)
- helix orientation Qasim Pars (Wed Oct 12 2016 - 07:42:28 CDT)
- Error when loading log files into ffTK Torsion Explorer david kastner (Mon Oct 10 2016 - 22:52:59 CDT)
- Size of POPC membrane Roshan Shrestha (Fri Oct 07 2016 - 04:27:11 CDT)
- Visual of a box and/or scale of distance in VMD graphics Harish Srinivasan (Fri Oct 07 2016 - 01:03:17 CDT)
- Simulations cutting out due to per-atom velocity Steven Cohen (Thu Oct 06 2016 - 14:52:05 CDT)
- POPC membrane equilibration Roshan Shrestha (Mon Oct 03 2016 - 08:11:23 CDT)
- Save work in the middle of chirality correction jrhau lung (Fri Sep 30 2016 - 02:35:43 CDT)
- Re: Save work in the middle of chirality correction Ryan McGreevy (Fri Sep 30 2016 - 11:39:04 CDT)
- QUESTION about NMWizad Guo, Jiasen (MU-Student) (Thu Sep 29 2016 - 18:33:41 CDT)
- Adding residues to dowser nikolaev_at_spbau.ru (Thu Sep 29 2016 - 16:32:10 CDT)
- Colouring atoms individually Albers, Thomas (Thu Sep 29 2016 - 16:31:24 CDT)
- QwikMD and platform choice James Kress (Thu Sep 29 2016 - 10:30:53 CDT)
- calculate the angle between two principal axes from two selecton sunyeping (Thu Sep 29 2016 - 04:49:57 CDT)
- TNG Plugin Niels M黮ler (Thu Sep 29 2016 - 03:49:51 CDT)
- Hands-On Workshop on Computational Biophysics: November 14-18 in Atlanta, GA Jodi Ann Hadden (Thu Sep 29 2016 - 00:27:46 CDT)
- Apply for ACS Comp travel awards for Spring 2017 meeting in San Francisco John Stone (Wed Sep 28 2016 - 11:16:51 CDT)
- Fwd: Dihedral fitting -FFTK-shift in minima Mohan maruthi sena (Wed Sep 28 2016 - 05:19:09 CDT)
- Alignment and RMSD calculation Tran, Tran (Tue Sep 27 2016 - 20:18:31 CDT)
- chain identifier change in the pdb files generated by the "solvate" and "Add Ions" plugin sunyeping (Mon Sep 26 2016 - 21:46:54 CDT)
- Q=BD=AC=E5=8F=91=EF=BC=9A__by_using_Ax?= el's HOOMD plugin, convert pdb to xml and missing bond information Darren Li (Mon Sep 26 2016 - 01:45:01 CDT)
- by using Axel's HOOMD plugin, convert pdb to xml and missing bond information Darren Li (Sun Sep 25 2016 - 22:40:02 CDT)
- mkdir command in vmd sunyeping (Sun Sep 25 2016 - 21:02:17 CDT)
- measuring angle between two domains of protein Felicia Jiang (Thu Sep 22 2016 - 17:18:19 CDT)
- compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Wed Sep 21 2016 - 07:42:06 CDT)
- Re: compiling VMD from CVS 2016 09 21 Axel Kohlmeyer (Wed Sep 21 2016 - 08:10:58 CDT)
- Re: compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Wed Sep 21 2016 - 08:26:17 CDT)
- Re: compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Wed Sep 21 2016 - 09:14:48 CDT)
- Re: compiling VMD from CVS 2016 09 21 John Stone (Wed Sep 21 2016 - 09:53:14 CDT)
- Re: compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Wed Sep 21 2016 - 10:17:28 CDT)
- Re: compiling VMD from CVS 2016 09 21 John Stone (Wed Sep 21 2016 - 11:15:56 CDT)
- Re: compiling VMD from CVS 2016 09 21 Hannes Loeffler (Wed Sep 21 2016 - 12:05:37 CDT)
- Re: compiling VMD from CVS 2016 09 21 John Stone (Thu Sep 22 2016 - 16:09:01 CDT)
- Re: compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Tue Oct 04 2016 - 08:33:31 CDT)
- Re: compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Tue Oct 04 2016 - 08:53:03 CDT)
- Re: compiling VMD from CVS 2016 09 21 John Stone (Wed Sep 21 2016 - 09:56:02 CDT)
- Re: compiling VMD from CVS 2016 09 21 Vlad Cojocaru (Wed Sep 21 2016 - 08:26:17 CDT)
- Re: compiling VMD from CVS 2016 09 21 Axel Kohlmeyer (Wed Sep 21 2016 - 08:10:58 CDT)
- pdb reader plugin error checking Bennion, Brian (Tue Sep 20 2016 - 13:47:26 CDT)
- dcd File and bounds Christian Wohlschlager (Mon Sep 19 2016 - 08:00:53 CDT)
- Hands-On Workshop on Computational Biophysics: October 17-21 in Urbana, IL Jodi Ann Hadden (Fri Sep 16 2016 - 15:35:45 CDT)
- Using pbc wrap with bigdcd Thomas Griffiths (Thu Sep 15 2016 - 20:56:49 CDT)
- Error of NAMD simulation when the structure including azide Chia-Ju Hsieh (Thu Sep 15 2016 - 10:15:34 CDT)
- setting secondary structure Chitrak Gupta (Fri Sep 09 2016 - 17:31:27 CDT)
- Setting Default Colors in vmdrc Tyler Westland (Thu Sep 08 2016 - 10:17:53 CDT)
- IR Spectrum Units marvin.hoffmann_at_stud.uni-heidelberg.de (Wed Sep 07 2016 - 08:46:59 CDT)
- Re: Lammps data visualization with VMD Axel Kohlmeyer (Mon Sep 05 2016 - 22:01:25 CDT)
- Clustering algorithm Abramyan, Tigran (Fri Sep 02 2016 - 12:27:59 CDT)
- Re: How to choose a ligand conformation to generate a CgenFF parameter jrhau lung (Fri Sep 02 2016 - 09:17:59 CDT)
- How to choose a ligand conformation to generate a CgenFF parameter jrhau lung (Fri Sep 02 2016 - 00:12:03 CDT)
- Atom Selection based on angular criterion Sangkha Borah (Thu Sep 01 2016 - 03:10:37 CDT)
- Error when using orient command #YEO JINGJIE# (Wed Aug 31 2016 - 16:46:17 CDT)
- generating images without shading Eric Smoll (Wed Aug 31 2016 - 13:52:43 CDT)
- Re: generating images without shading Ky Wildermuth (Wed Aug 31 2016 - 15:37:42 CDT)
- Re: generating images without shading John Stone (Wed Sep 07 2016 - 11:35:47 CDT)
- Re: generating images without shading Vermaas, Joshua (Wed Sep 07 2016 - 12:53:01 CDT)
- Re: generating images without shading John Stone (Wed Sep 07 2016 - 13:12:29 CDT)
- Re: generating images without shading Vermaas, Joshua (Wed Sep 07 2016 - 13:20:54 CDT)
- Re: generating images without shading John Stone (Wed Sep 07 2016 - 13:10:35 CDT)
- Re: generating images without shading John Stone (Wed Sep 07 2016 - 11:35:47 CDT)
- Re: generating images without shading Ky Wildermuth (Wed Aug 31 2016 - 15:37:42 CDT)
- Problem when loading 1QRA in QwiKMD jrhau lung (Mon Aug 29 2016 - 19:18:27 CDT)
- AW: AW: AW: How to smooth atom labels in a MD trajectory? Norman Geist (Mon Aug 22 2016 - 08:42:30 CDT)
- AW: AW: AW: How to smooth atom labels in a MD trajectory? Norman Geist (Mon Aug 22 2016 - 08:32:34 CDT)
- representation for multiple molecules Akshay Bhatnagar (Sun Aug 21 2016 - 21:23:15 CDT)
- How to smooth atom labels in a MD trajectory? 瀛欎笟骞 (Sat Aug 20 2016 - 13:06:37 CDT)
- how to change the color of all the C atoms in the newly created copy of representation sunyeping (Fri Aug 19 2016 - 07:54:55 CDT)
- getting list of correct indices? Olya Kravchenko (Thu Aug 18 2016 - 14:54:16 CDT)
- Lipid Bilayer Shearing Sachin Natesh (Tue Aug 16 2016 - 12:01:15 CDT)
- Minimization--Number of Timesteps Jackson Cavett (Fri Aug 12 2016 - 13:27:27 CDT)
- Re: Minimization--Number of Timesteps Vermaas, Joshua (Fri Aug 12 2016 - 14:45:00 CDT)
- VMD 1.9.3 omnidirectional rendering Sebastian Schneider (Fri Aug 12 2016 - 10:18:04 CDT)
- Re: VMD 1.9.3 omnidirectional rendering John Stone (Fri Aug 12 2016 - 14:23:17 CDT)
- Re: VMD 1.9.3 omnidirectional rendering Sebastian Schneider (Mon Aug 15 2016 - 14:59:40 CDT)
- Re: VMD 1.9.3 omnidirectional rendering John Stone (Mon Aug 15 2016 - 15:02:44 CDT)
- Re: VMD 1.9.3 omnidirectional rendering Sebastian Schneider (Tue Aug 23 2016 - 14:22:59 CDT)
- Re: VMD 1.9.3 omnidirectional rendering Vermaas, Joshua (Tue Aug 23 2016 - 15:55:57 CDT)
- Re: VMD 1.9.3 omnidirectional rendering Sebastian Schneider (Wed Aug 24 2016 - 15:48:59 CDT)
- Re: VMD 1.9.3 omnidirectional rendering Sebastian Schneider (Thu Aug 25 2016 - 08:02:16 CDT)
- Re: VMD 1.9.3 omnidirectional rendering Sebastian Schneider (Mon Aug 15 2016 - 14:59:40 CDT)
- Re: VMD 1.9.3 omnidirectional rendering John Stone (Fri Aug 12 2016 - 14:23:17 CDT)
- OptiXRenderer) ERROR: Launch failed Levi Pierce (Thu Aug 11 2016 - 14:08:23 CDT)
- using vslab in vmd Anjela Manandhar (Thu Aug 11 2016 - 10:56:54 CDT)
- processing a large "molecule" Arham Amouie (Sat Aug 06 2016 - 13:12:18 CDT)
- Water segid split Jos茅 G贸mez (Thu Aug 04 2016 - 16:50:03 CDT)
- Script runs slow afterwards Sangkha Borah (Thu Aug 04 2016 - 00:56:43 CDT)
- Aligning a dcd file of a protein consisting two chains kim, stephanie S. (Wed Aug 03 2016 - 11:31:37 CDT)
- Re: Aligning a dcd file of a protein consisting two chains Vermaas, Joshua (Wed Aug 03 2016 - 13:24:32 CDT)
- Cartoon represenation for non-standard residue Simon D眉rr (Tue Aug 02 2016 - 07:01:01 CDT)
- over-long bonds only in multi-frame trajectory Ming-Tsung Lee (Mon Aug 01 2016 - 17:55:37 CDT)
- Fwd: namd-l: water permeation through nanotube in lipid bilayer Nikhil Maroli (Fri Jul 29 2016 - 10:59:23 CDT)
- vmd linking error Richard Overstreet (Fri Jul 29 2016 - 11:53:57 CDT)
- AW: merging independent dcd files, Norman Geist (Thu Jul 28 2016 - 02:42:45 CDT)
- Which phosphoserine patch to use: SP1 or SP2? Devanand T (Wed Jul 27 2016 - 02:33:10 CDT)
- Parallel analysis using dynamic atom selections Patrick Charchar (Tue Jul 26 2016 - 23:01:01 CDT)
- merging independent dcd files, Aliasghar Alizadeh-Mojarad (Tue Jul 26 2016 - 22:05:10 CDT)
- calculation of geometric centers of the rings Vikas Varshney (Tue Jul 26 2016 - 08:15:13 CDT)
- Custom Water Box Jackson Cavett (Mon Jul 25 2016 - 20:34:31 CDT)
- topotools: write a particular selection into a lammps data file M K (Sun Jul 24 2016 - 23:08:25 CDT)
- list structure in measure cluster output Bennion, Brian (Fri Jul 22 2016 - 11:25:50 CDT)
- PorcupinePlot: invalid command name error Shubhangi Gupta (Fri Jul 22 2016 - 05:42:57 CDT)
- Linking 4 proteins Aditya Padhi (Thu Jul 21 2016 - 22:49:35 CDT)
- strange output from measure cluster Bennion, Brian (Thu Jul 21 2016 - 17:31:46 CDT)
- rendering with povray in mac Irem Altan (Thu Jul 21 2016 - 15:04:24 CDT)
- VMD 1.9.3 beta 1 posted for download... John Stone (Wed Jul 20 2016 - 23:33:49 CDT)
- RE: VMD 1.9.3 beta 1 posted for download... James Kress (Thu Jul 21 2016 - 08:21:13 CDT)
- Re: VMD 1.9.3 beta 1 posted for download... Bruce D'Amora (Thu Jul 21 2016 - 11:04:32 CDT)
- Re: VMD 1.9.3 beta 1 posted for download... John Stone (Thu Jul 21 2016 - 16:35:01 CDT)
- Changing atom colouring by a non-standard property Thomas Aldershof (Wed Jul 20 2016 - 01:36:21 CDT)
- Periodic cell has become too small for original patch grid Tahmina Akter (Tue Jul 19 2016 - 11:38:23 CDT)
- Problerm with STAMP Scazzocchio, Claudio (Sun Jul 17 2016 - 11:46:54 CDT)
- Inconsistent frame output with TMD simulations Steven Cohen (Thu Jul 14 2016 - 15:38:55 CDT)
- VMD window turning black with Nvidia 3d vision on ASUS monitor Vlad Cojocaru (Wed Jul 13 2016 - 05:06:23 CDT)
- How to compile for Python 3 Caio S. Souza (Tue Jul 12 2016 - 17:03:21 CDT)
- Re: About snapshot rendering in VMD-1.9.2 Remya Ann (Tue Jul 12 2016 - 12:22:08 CDT)
- Q=80=9CGraphical_Representation=E2=80=9D_question_?= Nuno Sousa Cerqueira (Tue Jul 12 2016 - 07:13:35 CDT)
- VMD called from python hangs on Windows Pawel Kedzierski (Mon Jul 11 2016 - 15:35:40 CDT)
- VMD failed after FFTW installation anu chandra (Mon Jul 11 2016 - 11:37:34 CDT)
- Re: VMD failed after FFTW installation John Stone (Mon Jul 11 2016 - 12:00:33 CDT)
- Re: VMD failed after FFTW installation anu chandra (Tue Jul 12 2016 - 07:19:06 CDT)
- Re: VMD failed after FFTW installation anu chandra (Tue Jul 12 2016 - 11:32:50 CDT)
- Re: VMD failed after FFTW installation John Stone (Wed Jul 13 2016 - 01:09:53 CDT)
- Re: VMD failed after FFTW installation Sourav Ray (Wed Jul 13 2016 - 03:49:00 CDT)
- Re: VMD failed after FFTW installation anu chandra (Thu Jul 14 2016 - 06:30:11 CDT)
- Re: VMD failed after FFTW installation John Stone (Thu Jul 14 2016 - 09:35:36 CDT)
- Re: VMD failed after FFTW installation Axel Kohlmeyer (Thu Jul 14 2016 - 10:31:15 CDT)
- Re: VMD failed after FFTW installation Axel Kohlmeyer (Thu Jul 14 2016 - 10:59:22 CDT)
- Re: VMD failed after FFTW installation Axel Kohlmeyer (Thu Jul 14 2016 - 16:32:26 CDT)
- Re: VMD failed after FFTW installation John Stone (Thu Jul 14 2016 - 20:34:31 CDT)
- Re: VMD failed after FFTW installation Axel Kohlmeyer (Fri Jul 15 2016 - 06:27:35 CDT)
- Re: VMD failed after FFTW installation anu chandra (Tue Jul 12 2016 - 07:19:06 CDT)
- Re: VMD failed after FFTW installation John Stone (Mon Jul 11 2016 - 12:00:33 CDT)
- psf file is changed Tahmina Akter (Sat Jul 09 2016 - 11:15:52 CDT)
- Question: VMD sasa calculation of the hydrophobic surface area on segname P2 Tran, Tran (Thu Jul 07 2016 - 23:46:37 CDT)
- Atom names aliased after psfgen Kevin C Chan (Thu Jul 07 2016 - 04:51:42 CDT)
- how to explore the frame number in clustering analysis by the clustering plugin sunyeping (Thu Jul 07 2016 - 03:54:16 CDT)
- Inconsistent atom count Laura Joana (Tue Jul 05 2016 - 12:04:44 CDT)
- I want to change back ground color Seera Suryanarayana (Tue Jul 05 2016 - 01:16:24 CDT)
- changing molid number Benjamin Hill (Mon Jul 04 2016 - 16:02:27 CDT)
- Installing VMD-1.9.2 in Ubuntu 16.04-32bit Remya Ann (Mon Jul 04 2016 - 01:39:17 CDT)
- On CHARMM angle bending potential Mr Bernard Ramos (Sun Jul 03 2016 - 22:56:38 CDT)
- PSA & Rg values Naeem Mahmood Ashraf (Sun Jul 03 2016 - 02:42:57 CDT)
- Energy between desired selected molecules Faezeh Pousaneh (Fri Jul 01 2016 - 02:41:40 CDT)
- Image Flags Sachin Natesh (Thu Jun 30 2016 - 20:36:07 CDT)
- K-means clustering algorithm for multiple frames in C Sourav Ray (Thu Jun 30 2016 - 07:54:04 CDT)
- making cluster for simulations Naeem Mahmood Ashraf (Wed Jun 29 2016 - 11:56:33 CDT)
- Exactly align view direction to coordinate axes Zhang, Dansong (Wed Jun 29 2016 - 10:45:15 CDT)
- MultiSeq error Andreas Tosstorff (Wed Jun 29 2016 - 03:26:50 CDT)
- secondary structure script Qasim Pars (Tue Jun 28 2016 - 19:31:58 CDT)
- generating autopsf Tahmina Akter (Tue Jun 28 2016 - 13:07:20 CDT)
- VMD 1.9.3 Sebastian Schneider (Tue Jun 28 2016 - 12:07:28 CDT)
- QwikMD/IMD Error connecting to localhost on port 3000 Kevin C Chan (Tue Jun 28 2016 - 08:24:19 CDT)
- System requirement for MD 10ns Naeem Mahmood Ashraf (Tue Jun 28 2016 - 07:24:04 CDT)
- Re: System requirement for MD 10ns Ajasja Ljubeti膷 (Tue Jun 28 2016 - 07:57:07 CDT)
- Re: System requirement for MD 10ns J茅r么me H茅nin (Tue Jun 28 2016 - 08:15:34 CDT)
- RE: System requirement for MD 10ns Richard Wood (Tue Jun 28 2016 - 08:19:59 CDT)
- Re: System requirement for MD 10ns Ashar Malik (Tue Jun 28 2016 - 11:03:49 CDT)
- VMD TkConsole font size Kotaro Tanaka (Tue Jun 28 2016 - 02:24:58 CDT)
- TLS handshake failed Gianluca Interlandi (Mon Jun 27 2016 - 20:45:45 CDT)
- Shortening a Simulation Jackson Cavett (Mon Jun 27 2016 - 19:11:05 CDT)
- Move center of volmap.dx Jean-Patrick Francoia (Sun Jun 26 2016 - 15:00:34 CDT)
- GPU acceleration on tachyon rendering Kevin C Chan (Fri Jun 24 2016 - 05:05:16 CDT)
- Re: GPU acceleration on tachyon rendering Ajasja Ljubeti膷 (Fri Jun 24 2016 - 06:52:47 CDT)
- Re: GPU acceleration on tachyon rendering John Stone (Tue Jun 28 2016 - 11:34:40 CDT)
- Re: GPU acceleration on tachyon rendering Kevin C Chan (Tue Jun 28 2016 - 22:14:39 CDT)
- Re: GPU acceleration on tachyon rendering Fernando Vallejos-Burgos (Tue Jun 28 2016 - 23:16:54 CDT)
- Re: GPU acceleration on tachyon rendering Kevin C Chan (Wed Jun 29 2016 - 09:14:01 CDT)
- Re: GPU acceleration on tachyon rendering John Stone (Wed Jun 29 2016 - 09:29:57 CDT)
- Re: GPU acceleration on tachyon rendering Kevin C Chan (Wed Jun 29 2016 - 22:23:03 CDT)
- Re: GPU acceleration on tachyon rendering Kevin C Chan (Wed Jun 29 2016 - 22:26:58 CDT)
- Re: GPU acceleration on tachyon rendering Kevin C Chan (Thu Jun 30 2016 - 09:16:51 CDT)
- Re: GPU acceleration on tachyon rendering John Stone (Tue Jun 28 2016 - 11:34:40 CDT)
- Re: GPU acceleration on tachyon rendering Ajasja Ljubeti膷 (Fri Jun 24 2016 - 06:52:47 CDT)
- troubles with openGL Stefano Guglielmo (Thu Jun 23 2016 - 07:08:09 CDT)
- AW: Selecting atoms of same type in a certain distance (between X and Y angstroms away) Norman Geist (Thu Jun 23 2016 - 01:22:06 CDT)
- Render VR scenes in VMD 1.9.2 (possible?) Fernando Vallejos-Burgos (Wed Jun 22 2016 - 22:07:49 CDT)
- Selecting atoms of same type in a certain distance (between X and Y angstroms away) Simon D眉rr (Wed Jun 22 2016 - 08:42:50 CDT)
- catdcd Paul Schlesinger (Wed Jun 22 2016 - 06:11:00 CDT)
- Isosurface Render - No Color? Foster, Clay A. (Mon Jun 20 2016 - 18:06:37 CDT)
- Positioning protein on membrane-water interface Allen, Caley R (Fri Jun 17 2016 - 14:27:23 CDT)
- Setting atom coordinates in VMD Vishnu K (Fri Jun 17 2016 - 02:37:11 CDT)
- Can't read DCD files generated using NAMD. Richard Wood (Thu Jun 16 2016 - 11:12:53 CDT)
- Re: Can't read DCD files generated using NAMD. John Stone (Thu Jun 16 2016 - 15:02:42 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Thu Jun 16 2016 - 16:53:11 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Thu Jun 16 2016 - 19:17:04 CDT)
- Re: Can't read DCD files generated using NAMD. John Stone (Thu Jun 16 2016 - 19:39:05 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Fri Jun 17 2016 - 05:51:42 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Sat Jun 18 2016 - 09:20:09 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Sun Jun 19 2016 - 08:42:21 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Mon Jun 20 2016 - 07:47:38 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Tue Jun 21 2016 - 06:12:17 CDT)
- RE: Can't read DCD files generated using NAMD. Richard Wood (Thu Jun 16 2016 - 16:53:11 CDT)
- Re: Can't read DCD files generated using NAMD. John Stone (Thu Jun 16 2016 - 15:02:42 CDT)
- Density profile tool plugin Faezeh Pousaneh (Thu Jun 16 2016 - 02:12:50 CDT)
- SURF Stefano Guglielmo (Wed Jun 15 2016 - 19:42:01 CDT)
- zooming into a chosen atom Irem Altan (Wed Jun 15 2016 - 15:56:29 CDT)
- (no subject) Eric Smoll (Wed Jun 15 2016 - 15:41:27 CDT)
- segmentation fault on OSX El capitan Peter Schmidtke (Tue Jun 14 2016 - 03:00:50 CDT)
- frequecy of inter-residue contact Anjela Manandhar (Mon Jun 13 2016 - 16:12:15 CDT)
- CatDCD refuses to work (mac) Heather Boltz (Fri Jun 10 2016 - 22:05:39 CDT)
- hiding atoms outside the unit cell Irem Altan (Thu Jun 09 2016 - 10:16:29 CDT)
- VMD XYZ plugin: add support for reading velocities Christian Leitold (Thu Jun 09 2016 - 10:06:55 CDT)
- Saving variable information Murilo Kramar (Wed Jun 08 2016 - 15:49:45 CDT)
- Script to generate PSF: ERROR, additional atoms Francesco Greco (Wed Jun 08 2016 - 07:52:42 CDT)
- pyvmd: Highlevel python library for VMD Vlastimil Z铆ma (Wed Jun 08 2016 - 06:33:59 CDT)
- radius of gyration autocorrelation function faride badalkhani (Tue Jun 07 2016 - 15:40:10 CDT)
- How to extract residue names and resid from serial numbers in vmd using tcl? Devanand T (Tue Jun 07 2016 - 13:07:39 CDT)
- Using VMD in Java application Luis Omar Alvarez Mures (Tue Jun 07 2016 - 07:40:30 CDT)
- bond Label position Parvez Mh (Mon Jun 06 2016 - 12:21:00 CDT)
- psfgen error with "auto angles dihe patch" Chitrak Gupta (Mon Jun 06 2016 - 10:47:01 CDT)
- trr generated by catdcd Stefano Guglielmo (Sun Jun 05 2016 - 04:17:51 CDT)
- much larger diameter of ssDNA, Aliasghar Alizadeh-Mojarad (Sat Jun 04 2016 - 04:22:41 CDT)
- namdenergy and bigdcd Grant Schauer (Fri Jun 03 2016 - 15:55:26 CDT)
- rmsf calculation Stefano Guglielmo (Fri Jun 03 2016 - 03:01:50 CDT)
- radius of gyration autocorrelation function faride badalkhani (Thu Jun 02 2016 - 14:23:28 CDT)
- non-standard solvents faride badalkhani (Thu Jun 02 2016 - 12:54:20 CDT)
- how to plot multiple namd log files using NAMD plot sunyeping (Wed Jun 01 2016 - 22:07:54 CDT)
- Running a source script from a C shell Ky Wildermuth (Wed Jun 01 2016 - 21:52:38 CDT)
- Disabling VMD logo Bryan Roessler (Tue May 31 2016 - 20:40:27 CDT)
- vmd 1.9.3 beta release-regd Mohan maruthi sena (Tue May 31 2016 - 01:06:00 CDT)
- VMD with EGL Bruce D'Amora (Sun May 29 2016 - 07:34:56 CDT)
- Wrapping problem Ajasja Ljubeti膷 (Fri May 27 2016 - 11:10:05 CDT)
- non-water solvent prepared by VMD Deng, Jinxia (Nancy) (Thu May 26 2016 - 12:22:45 CDT)
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- Re: defining/updating atom selection within loop John Stone (Wed May 25 2016 - 21:52:21 CDT)
- Re: defining/updating atom selection within loop Chitrak Gupta (Wed May 25 2016 - 22:05:21 CDT)
- Re: defining/updating atom selection within loop Josh Vermaas (Thu May 26 2016 - 06:46:36 CDT)
- Re: defining/updating atom selection within loop Chitrak Gupta (Thu May 26 2016 - 13:11:05 CDT)
- Re: defining/updating atom selection within loop Josh Vermaas (Thu May 26 2016 - 13:14:36 CDT)
- Re: defining/updating atom selection within loop Chitrak Gupta (Thu May 26 2016 - 15:31:33 CDT)
- Re: defining/updating atom selection within loop Josh Vermaas (Thu May 26 2016 - 15:35:18 CDT)
- Re: defining/updating atom selection within loop Chitrak Gupta (Fri May 27 2016 - 14:03:47 CDT)
- Re: defining/updating atom selection within loop Chitrak Gupta (Wed May 25 2016 - 22:05:21 CDT)
- Re: defining/updating atom selection within loop John Stone (Wed May 25 2016 - 21:52:21 CDT)
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- Re: TCL script to track molecules moving within a specified region each time frame Chitrak Gupta (Mon May 16 2016 - 11:30:33 CDT)
- Re: TCL script to track molecules moving within a specified region each time frame Dive, Aniruddha Mukund (Mon May 16 2016 - 12:57:18 CDT)
- Re: TCL script to track molecules moving within a specified region each time frame Chitrak Gupta (Mon May 16 2016 - 13:53:54 CDT)
- AW: TCL script to track molecules moving within a specified region each time frame Norman Geist (Tue May 17 2016 - 00:02:49 CDT)
- Re: TCL script to track molecules moving within a specified region each time frame Dive, Aniruddha Mukund (Tue May 17 2016 - 11:26:04 CDT)
- Re: TCL script to track molecules moving within a specified region each time frame Dive, Aniruddha Mukund (Mon May 16 2016 - 12:57:18 CDT)
- Re: TCL script to track molecules moving within a specified region each time frame Chitrak Gupta (Mon May 16 2016 - 11:30:33 CDT)
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- Re: CHARMM36 alleged missing CC CT1 NH2 angle params Francesco Pietra (Mon May 16 2016 - 04:30:29 CDT)
- Re: CHARMM36 alleged missing CC CT1 NH2 angle params Peter Freddolino (Mon May 16 2016 - 07:46:47 CDT)
- Re: namd-l: Re: CHARMM36 alleged missing CC CT1 NH2 angle params Francesco Pietra (Mon May 16 2016 - 08:54:45 CDT)
- Re: CHARMM36 alleged missing CC CT1 NH2 angle params Francesco Pietra (Mon May 16 2016 - 08:54:31 CDT)
- Re: namd-l: Re: CHARMM36 alleged missing CC CT1 NH2 angle params JC Gumbart (Tue May 17 2016 - 09:29:52 CDT)
- Re: namd-l: Re: CHARMM36 alleged missing CC CT1 NH2 angle params Francesco Pietra (Tue May 17 2016 - 11:43:05 CDT)
- Re: CHARMM36 alleged missing CC CT1 NH2 angle params Peter Freddolino (Mon May 16 2016 - 07:46:47 CDT)
- Re: CHARMM36 alleged missing CC CT1 NH2 angle params Francesco Pietra (Mon May 16 2016 - 04:30:29 CDT)
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- Re: solvate fails to set coordinates for the first few residues of the first chain? Josh Vermaas (Tue Apr 19 2016 - 16:27:38 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Josh Vermaas (Tue Apr 19 2016 - 17:09:00 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Ashar Malik (Tue Apr 19 2016 - 19:33:32 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Ashar Malik (Tue Apr 19 2016 - 19:38:54 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Ashar Malik (Wed Apr 20 2016 - 00:29:41 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Olya Kravchenko (Wed Apr 20 2016 - 10:57:07 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Josh Vermaas (Tue Apr 19 2016 - 17:09:00 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Ashar Malik (Tue Apr 19 2016 - 16:17:17 CDT)
- Re: solvate fails to set coordinates for the first few residues of the first chain? Josh Vermaas (Tue Apr 19 2016 - 16:27:38 CDT)
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- Re: colvars problem - different values in VMD and NAMD Karteek Kumar (Fri Apr 15 2016 - 09:50:19 CDT)
- Re: colvars problem - different values in VMD and NAMD J茅r么me H茅nin (Fri Apr 15 2016 - 11:50:32 CDT)
- Re: colvars problem - different values in VMD and NAMD John Stone (Fri Apr 15 2016 - 12:22:00 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Sat Apr 16 2016 - 05:16:22 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Sat Apr 16 2016 - 07:34:20 CDT)
- Re: colvars problem - different values in VMD and NAMD J茅r么me H茅nin (Mon Apr 18 2016 - 07:20:25 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 07:36:54 CDT)
- Re: colvars problem - different values in VMD and NAMD J茅r么me H茅nin (Mon Apr 18 2016 - 07:40:59 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 07:52:01 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 07:53:44 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 08:24:25 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 08:31:40 CDT)
- Re: colvars problem - different values in VMD and NAMD J茅r么me H茅nin (Mon Apr 18 2016 - 08:40:03 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 09:05:44 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Mon Apr 18 2016 - 09:44:06 CDT)
- Re: colvars problem - different values in VMD and NAMD Laura Joana (Tue Apr 19 2016 - 04:17:09 CDT)
- Re: colvars problem - different values in VMD and NAMD J茅r么me H茅nin (Fri Apr 15 2016 - 11:50:32 CDT)
- Re: colvars problem - different values in VMD and NAMD J茅r么me H茅nin (Fri Apr 15 2016 - 09:50:05 CDT)
- Re: colvars problem - different values in VMD and NAMD Karteek Kumar (Fri Apr 15 2016 - 09:50:19 CDT)
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- Re: Clonerep GUI issue with VMD CVS Josh Vermaas (Fri Apr 08 2016 - 09:22:36 CDT)
- Re: Clonerep GUI issue with VMD CVS John Stone (Fri Apr 08 2016 - 09:14:42 CDT)
- Re: Clonerep GUI issue with VMD CVS Nuno Sousa Cerqueira (Fri Apr 08 2016 - 09:56:57 CDT)
- Re: Clonerep GUI issue with VMD CVS J茅r么me H茅nin (Mon May 02 2016 - 10:36:17 CDT)
- Re: Clonerep GUI issue with VMD CVS John Stone (Mon May 02 2016 - 10:47:18 CDT)
- Re: Clonerep GUI issue with VMD CVS J茅r么me H茅nin (Mon May 02 2016 - 11:26:13 CDT)
- Re: Clonerep GUI issue with VMD CVS John Stone (Mon May 02 2016 - 11:37:42 CDT)
- Re: Clonerep GUI issue with VMD CVS Nuno Sousa Cerqueira (Fri Apr 08 2016 - 09:56:57 CDT)
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- Re: setting up a 4k HD TV for passive stereoscopic 3d John Stone (Wed Apr 06 2016 - 14:31:51 CDT)
- RE: setting up a 4k HD TV for passive stereoscopic 3d Yoav Atsmon-Raz (Wed Apr 06 2016 - 14:49:10 CDT)
- Re: setting up a 4k HD TV for passive stereoscopic 3d John Stone (Wed Apr 06 2016 - 19:19:16 CDT)
- AW: setting up a 4k HD TV for passive stereoscopic 3d Norman Geist (Thu Apr 07 2016 - 00:30:41 CDT)
- RE: setting up a 4k HD TV for passive stereoscopic 3d Yoav Atsmon-Raz (Thu Apr 07 2016 - 15:34:34 CDT)
- Re: setting up a 4k HD TV for passive stereoscopic 3d John Stone (Fri Apr 08 2016 - 00:36:45 CDT)
- AW: setting up a 4k HD TV for passive stereoscopic 3d Norman Geist (Fri Apr 08 2016 - 01:46:12 CDT)
- RE: setting up a 4k HD TV for passive stereoscopic 3d Yoav Atsmon-Raz (Wed Apr 06 2016 - 14:49:10 CDT)
- Re: setting up a 4k HD TV for passive stereoscopic 3d John Stone (Wed Apr 06 2016 - 14:31:51 CDT)
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- Re: Rendering high quality obj, x3d and other files for use in other 3D representation systems John Stone (Sat Apr 02 2016 - 21:20:57 CDT)
- RE: Rendering high quality obj, x3d and other files for use in other 3D representation systems James Kress (Sat Apr 02 2016 - 22:14:08 CDT)
- Re: Rendering high quality obj, x3d and other files for use in other 3D representation systems John Stone (Sat Apr 02 2016 - 22:44:07 CDT)
- RE: Rendering high quality obj, x3d and other files for use in other 3D representation systems James Kress (Sat Apr 02 2016 - 22:54:03 CDT)
- Re: Rendering high quality obj, x3d and other files for use in other 3D representation systems John Stone (Sat Apr 02 2016 - 23:04:09 CDT)
- RE: Rendering high quality obj, x3d and other files for use in other 3D representation systems James Kress (Sat Apr 02 2016 - 23:11:04 CDT)
- RE: Rendering high quality obj, x3d and other files for use in other 3D representation systems James Kress (Sat Apr 02 2016 - 22:14:08 CDT)
- Re: Rendering high quality obj, x3d and other files for use in other 3D representation systems John Stone (Sat Apr 02 2016 - 21:20:57 CDT)
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- RE: How to draw a box in VMD and plot the coordinates of the system ABHISHEK GUPTA (Mon Mar 28 2016 - 00:50:24 CDT)
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- Re: Adding hydrogens breaks "protein" atomselection and bonds Peter Freddolino (Wed Mar 16 2016 - 08:55:12 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Stefan Doerr (Wed Mar 16 2016 - 09:01:22 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Peter Freddolino (Wed Mar 16 2016 - 09:23:48 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Axel Kohlmeyer (Wed Mar 16 2016 - 09:20:30 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Stefan Doerr (Wed Mar 16 2016 - 09:25:33 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Stefan Doerr (Wed Mar 16 2016 - 09:27:00 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Stefan Doerr (Wed Mar 16 2016 - 09:01:22 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Josh Vermaas (Wed Mar 16 2016 - 09:29:31 CDT)
- Re: Adding hydrogens breaks "protein" atomselection and bonds Peter Freddolino (Wed Mar 16 2016 - 08:55:12 CDT)
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- Re: Unable to visualize my polymer chains generated using RIS theory using VMD properly John Stone (Wed Mar 16 2016 - 11:25:51 CDT)
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- Re: visualizing MDFF results with explicit solvent John Stone (Tue Mar 01 2016 - 09:50:56 CST)
- how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 10:35:36 CST)
- Re: how to analyze fitting structure into density map Ryan McGreevy (Tue Mar 01 2016 - 11:09:45 CST)
- Re: how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 11:11:02 CST)
- Re: how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Tue Mar 01 2016 - 18:54:19 CST)
- Re: how to analyze fitting structure into density map Ryan McGreevy (Tue Mar 01 2016 - 23:28:07 CST)
- Re: how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Wed Mar 02 2016 - 18:05:34 CST)
- Re: how to analyze fitting structure into density map Ryan McGreevy (Wed Mar 02 2016 - 18:51:04 CST)
- Re: how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Wed Mar 02 2016 - 18:58:53 CST)
- RE: how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Thu Mar 03 2016 - 13:17:52 CST)
- Re: how to analyze fitting structure into density map Ryan McGreevy (Thu Mar 03 2016 - 13:36:28 CST)
- RE: how to analyze fitting structure into density map Bylund, Tatsiana (NIH/NIAID) [F] (Thu Mar 03 2016 - 13:38:59 CST)
- Re: how to analyze fitting structure into density map Ryan McGreevy (Tue Mar 01 2016 - 11:09:45 CST)
- pbc to keep membrane in center Deng, Jinxia (Nancy) (Tue Mar 01 2016 - 09:03:27 CST)
- vmd and proxy settings Greipel.Joachim_at_mh-hannover.de (Tue Mar 01 2016 - 05:59:03 CST)
- Re: vmd and proxy settings John Stone (Tue Mar 01 2016 - 10:22:15 CST)
- Re: Not all frames loaded Josh Vermaas (Mon Feb 29 2016 - 15:35:40 CST)
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- Re: wrapping multi chain proteins Josh Vermaas (Fri Feb 19 2016 - 09:50:34 CST)
- Re: wrapping multi chain proteins Nicolas Martin (Fri Feb 19 2016 - 11:48:59 CST)
- Re: wrapping multi chain proteins Josh Vermaas (Fri Feb 19 2016 - 11:54:04 CST)
- Re: wrapping multi chain proteins Nicolas Martin (Fri Feb 19 2016 - 12:04:18 CST)
- Re: wrapping multi chain proteins Josh Vermaas (Fri Feb 19 2016 - 12:10:53 CST)
- Re: wrapping multi chain proteins Nicolas Martin (Fri Feb 19 2016 - 12:14:44 CST)
- Re: wrapping multi chain proteins Chitrak Gupta (Mon Feb 22 2016 - 14:52:32 CST)
- Re: wrapping multi chain proteins Nicolas Martin (Tue Feb 23 2016 - 06:46:44 CST)
- Re: wrapping multi chain proteins Nicolas Martin (Fri Feb 19 2016 - 11:48:59 CST)
- Re: wrapping multi chain proteins Josh Vermaas (Fri Feb 19 2016 - 09:50:34 CST)
- Bond Optimization FFTK error Soumya Lipsa Rath (Thu Feb 18 2016 - 18:18:04 CST)
- Re: Re: Molecule not visible in VMD 1.9.2 MAC OS X El Capitan Nixon Raj (Wed Feb 17 2016 - 04:21:33 CST)
- Molecule not visible in VMD 1.9.2 MAC OS X El Capitan Nixon Raj (Mon Feb 15 2016 - 20:56:53 CST)
- hydrophobic interaction between peptide vs membrane Deng, Jinxia (Nancy) (Mon Feb 15 2016 - 10:51:28 CST)
- editing distance.tcl debra ragland (Mon Feb 15 2016 - 08:23:38 CST)
- moving atoms and updating distances jing liang (Sat Feb 13 2016 - 11:15:34 CST)
- Tachyon renderer memory error Eiros Zamora, Juan (Tue Feb 09 2016 - 04:44:38 CST)
- Changing molecule number Irem Altan (Mon Feb 08 2016 - 09:02:03 CST)
- Regarding pbc tool: pbc join fragment -bondlist + topo tool M K (Sat Feb 06 2016 - 07:23:08 CST)
- vmd console problem Reza Shakouri (Fri Feb 05 2016 - 14:31:04 CST)
- AW: loading electron density maps with a script Norman Geist (Fri Feb 05 2016 - 02:30:05 CST)
- FFTK and the divide and conquer strategy fvlieffe (Thu Feb 04 2016 - 03:37:02 CST)
- loading electron density maps with a script Irem Altan (Wed Feb 03 2016 - 16:02:48 CST)
- What is the correct way of using "pbcwrap" with "atomselect [within]"? Monika Madhavi (Tue Feb 02 2016 - 01:34:46 CST)
- Updating atomselections in every frame and write to a pdb Monika Madhavi (Mon Feb 01 2016 - 18:01:41 CST)
- Re: Updating atomselections in every frame and write to a pdb Peter Freddolino (Mon Feb 01 2016 - 20:51:30 CST)
- Re: Updating atomselections in every frame and write to a pdb Monika Madhavi (Mon Feb 01 2016 - 21:12:45 CST)
- Re: Updating atomselections in every frame and write to a pdb Peter Freddolino (Mon Feb 01 2016 - 21:21:28 CST)
- Re: Updating atomselections in every frame and write to a pdb Monika Madhavi (Mon Feb 01 2016 - 22:15:55 CST)
- Re: Updating atomselections in every frame and write to a pdb Peter Freddolino (Mon Feb 01 2016 - 22:25:26 CST)
- Re: Updating atomselections in every frame and write to a pdb Monika Madhavi (Mon Feb 01 2016 - 21:12:45 CST)
- Re: Updating atomselections in every frame and write to a pdb Peter Freddolino (Mon Feb 01 2016 - 20:51:30 CST)
- can't read "viewplist": no such variable Dimitrova, Maria (Mon Feb 01 2016 - 09:05:41 CST)
- VMD Hbond criterion vs. other software debra ragland (Mon Feb 01 2016 - 07:24:40 CST)
- A nanosphere with mass Shubham Mishra (Mon Feb 01 2016 - 02:25:09 CST)
- A nanosphere with mass Shubham Mishra (Mon Feb 01 2016 - 02:24:21 CST)
- A nanosphere with mass Shubham Mishra (Mon Feb 01 2016 - 01:29:43 CST)
- FFTK Diherdal Scan error Soumya Lipsa Rath (Mon Feb 01 2016 - 00:27:26 CST)
- building a solvent/gas filled simulation box, no protein inside Olya Kravchenko (Fri Jan 29 2016 - 13:17:28 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Maxim Belkin (Fri Jan 29 2016 - 13:26:21 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Olya Kravchenko (Fri Jan 29 2016 - 13:36:24 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Maxim Belkin (Fri Jan 29 2016 - 14:18:57 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Peter Freddolino (Sat Jan 30 2016 - 19:28:40 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Olya Kravchenko (Thu Feb 04 2016 - 20:53:17 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Olya Kravchenko (Thu Feb 04 2016 - 21:23:13 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Maxim Belkin (Fri Feb 05 2016 - 14:20:04 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Olya Kravchenko (Fri Jan 29 2016 - 13:36:24 CST)
- Re: building a solvent/gas filled simulation box, no protein inside Maxim Belkin (Fri Jan 29 2016 - 13:26:21 CST)
- selection of atoms/residues across multiple molecules... Shashidhar Rao (Fri Jan 29 2016 - 10:45:07 CST)
- Re: selection of atoms/residues across multiple molecules... Ashar Malik (Sat Jan 30 2016 - 23:26:21 CST)
- Re: selection of atoms/residues across multiple molecules... Shashidhar Rao (Mon Feb 01 2016 - 10:57:37 CST)
- Re: selection of atoms/residues across multiple molecules... Ashar Malik (Mon Feb 01 2016 - 11:52:22 CST)
- Re: selection of atoms/residues across multiple molecules... Shashidhar Rao (Mon Feb 01 2016 - 14:25:15 CST)
- Re: selection of atoms/residues across multiple molecules... Ashar Malik (Mon Feb 01 2016 - 16:02:49 CST)
- Re: selection of atoms/residues across multiple molecules... Shashidhar Rao (Mon Feb 01 2016 - 16:27:39 CST)
- Re: selection of atoms/residues across multiple molecules... Shashidhar Rao (Mon Feb 01 2016 - 10:57:37 CST)
- Re: selection of atoms/residues across multiple molecules... Ashar Malik (Sat Jan 30 2016 - 23:26:21 CST)
- atomselect: cannot parse selection text: index Monika Madhavi (Thu Jan 28 2016 - 23:11:57 CST)
- making a movie in a tcl script using graphics commands Nima Emadi (Thu Jan 28 2016 - 14:10:33 CST)
- Re: making a movie in a tcl script using graphics commands Josh Vermaas (Thu Jan 28 2016 - 14:52:33 CST)
- Re: making a movie in a tcl script using graphics commands Nima Emadi (Thu Jan 28 2016 - 14:50:50 CST)
- Feature request: Change printf( to fprintf(stderr, in molfile plugins Charles McAnany (Thu Jan 28 2016 - 12:23:46 CST)
- how to save coordinates from others molecule files Marta Wisniewska (Thu Jan 28 2016 - 11:08:19 CST)
- Extracting velocity information from .gro or .trr files Davide Mercadante (Thu Jan 28 2016 - 10:30:47 CST)
- Specify stride from command line Eiros Zamora, Juan (Thu Jan 28 2016 - 10:07:43 CST)
- tcl scripting for adding hydrogens to particular atoms in multiple pdb files Shoresh Shafei (Wed Jan 27 2016 - 10:15:58 CST)
- VMD 1.9.2 Crashes (CUDA,VRPN) Munir Ahmad (Wed Jan 27 2016 - 07:35:50 CST)
- tcl command to write amber format files Akshay Bhatnagar (Tue Jan 26 2016 - 22:40:18 CST)
- vmd does not start Kris Feher (Mon Jan 25 2016 - 11:41:09 CST)
- select atoms within a sphere - atomselect Monika Madhavi (Sun Jan 24 2016 - 23:31:07 CST)
- Re: select atoms within a sphere - atomselect Ashar Malik (Mon Jan 25 2016 - 00:51:22 CST)
- AW: select atoms within a sphere - atomselect Norman Geist (Mon Jan 25 2016 - 01:09:42 CST)
- Re: select atoms within a sphere - atomselect M K (Mon Jan 25 2016 - 03:35:42 CST)
- Re: select atoms within a sphere - atomselect Ashar Malik (Mon Jan 25 2016 - 03:56:04 CST)
- Re: select atoms within a sphere - atomselect M K (Mon Jan 25 2016 - 04:39:01 CST)
- Re: select atoms within a sphere - atomselect Monika Madhavi (Mon Jan 25 2016 - 08:58:54 CST)
- Re: select atoms within a sphere - atomselect Ashar Malik (Mon Jan 25 2016 - 12:59:23 CST)
- Re: select atoms within a sphere - atomselect M K (Mon Jan 25 2016 - 03:35:42 CST)
- Running atomselect made a seg fault yong zhou (Thu Jan 21 2016 - 09:11:24 CST)
- Obscure bug in RMSD tool (the original) Tristan Croll (Thu Jan 21 2016 - 02:41:42 CST)
- Manipulating the pdb file Mohsen Farshad (Wed Jan 20 2016 - 18:34:01 CST)
- "user add key" feature Eric Smoll (Wed Jan 20 2016 - 18:02:41 CST)
- Showing atom index in vmd reza vatan (Wed Jan 20 2016 - 16:28:36 CST)
- VMD stereo NVIDIA 3D vision with Composite Vlad Cojocaru (Wed Jan 20 2016 - 11:45:30 CST)
- which version!? Reza Shakouri (Tue Jan 19 2016 - 09:29:36 CST)
- No error details for VMD compilation from Source. Munir Ahmad (Thu Jan 14 2016 - 15:40:53 CST)
- pdb was not generated Albert (Thu Jan 14 2016 - 11:53:36 CST)
- Recommended method to attach labels to atoms in VMD Eric Smoll (Wed Jan 13 2016 - 15:33:47 CST)
- question about reading more volumes via atomselect or removing of them Daniel M鰈ler (Wed Jan 13 2016 - 08:33:13 CST)
- Show additional data Matthias Ernst (Fri Jan 08 2016 - 12:55:49 CST)
- PhD and postdoctoral positions in biomolecular simulation Allison, Jane (Thu Jan 07 2016 - 15:50:48 CST)
- removing water from inside the membranes in a duplicate membrane system Olya Kravchenko (Wed Jan 06 2016 - 15:51:47 CST)
- Bugs in solvate plugin Vlastimil Z铆ma (Wed Jan 06 2016 - 03:27:41 CST)
- -fpascal-strings flag when compiling with TDCONNEXION option Tristan Croll (Wed Jan 06 2016 - 01:50:30 CST)
- error message MultiSeq - sequence alignement Marie Erard (Tue Jan 05 2016 - 15:52:06 CST)
- Possible bug in topotools plugin Morteza Jalalvand (Sun Jan 03 2016 - 10:53:44 CST)
- mdff: tutorial Rose, Stuart Wallace (Wed Dec 30 2015 - 09:55:01 CST)
- Improving movie clarity anu chandra (Tue Dec 29 2015 - 18:05:58 CST)
- TCL code for psf file Mohsen Farshad (Sun Dec 27 2015 - 12:01:38 CST)
- calculating RMSD for a trajectory file Mai Aamer (Mon Dec 21 2015 - 04:44:53 CST)
- importing deMon2k "molden" files into VMD Urquhart, Stephen (Sat Dec 19 2015 - 17:22:27 CST)
- mol add url Thomas C Bishop (Fri Dec 18 2015 - 16:41:24 CST)
- Number of pdb and psf atoms are not the same! Francesco Pietra (Wed Dec 16 2015 - 09:23:41 CST)
- Request for atom sequence followed by topo tools Swamy Sumanth (Mon Dec 14 2015 - 23:59:25 CST)
- Coarse-graining: Inability to assign charge to C-terminus using fix_martini_psf.tcl Sourav Ray (Mon Dec 14 2015 - 17:51:46 CST)
- Steinhardt order parameter and clustering algorithms MannyEful E (Sat Dec 12 2015 - 13:04:18 CST)
- VMD-NAMD and PDB element column Francesco Pietra (Sat Dec 12 2015 - 09:09:55 CST)
- Re: namd-l: VMD-NAMD and PDB element column Jim Phillips (Sun Dec 13 2015 - 12:17:57 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Francesco Pietra (Sun Dec 13 2015 - 13:39:11 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Jim Phillips (Sun Dec 13 2015 - 14:32:38 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Francesco Pietra (Sun Dec 13 2015 - 15:59:37 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Jim Phillips (Mon Dec 14 2015 - 09:04:21 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Francesco Pietra (Mon Dec 14 2015 - 14:52:18 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Francesco Pietra (Mon Dec 14 2015 - 14:42:21 CST)
- Re: Re: namd-l: VMD-NAMD and PDB element column Francesco Pietra (Sun Dec 13 2015 - 13:39:11 CST)
- Re: namd-l: VMD-NAMD and PDB element column Jim Phillips (Sun Dec 13 2015 - 12:17:57 CST)
- NetCDF plug-in for VMD Wanlei Wei (Fri Dec 11 2015 - 07:49:43 CST)
- Problems with GLUP and ASPP with CHARMM36 Francesco Pietra (Fri Dec 11 2015 - 05:07:03 CST)
- Re: namd-l: Problems with GLUP and ASPP with CHARMM36 Josh Vermaas (Fri Dec 11 2015 - 08:45:00 CST)
- Unable to access config file Julio Cantu (Thu Dec 10 2015 - 17:36:05 CST)
- Re: Unable to access config file Ashar Malik (Thu Dec 10 2015 - 22:57:56 CST)
- Re: Unable to access config file Ajasja Ljubeti膷 (Fri Dec 11 2015 - 02:31:41 CST)
- RE: Unable to access config file Richard Wood (Fri Dec 11 2015 - 08:51:37 CST)
- Re: Unable to access config file Ajasja Ljubeti膷 (Fri Dec 11 2015 - 11:24:18 CST)
- RE: Unable to access config file Richard Wood (Fri Dec 11 2015 - 11:32:04 CST)
- Re: Unable to access config file Maxim Belkin (Fri Dec 11 2015 - 11:36:14 CST)
- Re: Unable to access config file Pawel Kedzierski (Fri Dec 11 2015 - 03:52:26 CST)
- Re: Unable to access config file Ajasja Ljubeti膷 (Fri Dec 11 2015 - 02:31:41 CST)
- Re: Unable to access config file Ashar Malik (Thu Dec 10 2015 - 22:57:56 CST)
- PRES and water-ions issues with charmm36 Francesco Pietra (Thu Dec 10 2015 - 15:30:14 CST)
- Ubuntu launcher and WM_CLASS Peter Husen (Thu Dec 10 2015 - 06:07:44 CST)
- Re: Ubuntu launcher and WM_CLASS John Stone (Thu Dec 10 2015 - 08:54:22 CST)
- [lammps-users] NPT/ Missing bonds / atoms & atom overlap Georgia Tsagkaropoulou (Wed Dec 09 2015 - 11:19:25 CST)
- Defining space coordinates for multiple structures Mariano Smoler (Tue Dec 08 2015 - 13:08:15 CST)
- residue-residue interaction energy elena ermakova (Tue Dec 08 2015 - 02:48:04 CST)
- Fwd: couldn't execute "psfgen": no such file or directory zeynab hoseyni (Sun Dec 06 2015 - 07:39:17 CST)
- couldn't execute "psfgen": no such file or directory zeynab hoseyni (Sun Dec 06 2015 - 07:02:21 CST)
- alignment of two the same structures Marta Wisniewska (Fri Dec 04 2015 - 11:45:39 CST)
- IR Spectral Density Tool Dive, Aniruddha Mukund (Thu Dec 03 2015 - 20:39:11 CST)
- (no subject) Abhijit Ghosh (Thu Dec 03 2015 - 12:35:43 CST)
- minimizing text console on startup (Windows) Jason Quenneville (Thu Dec 03 2015 - 10:02:30 CST)
- Measure atom position directly from index Tristan Croll (Wed Dec 02 2015 - 19:20:53 CST)
- Amber calculated structure(PDB) visualization in pymol vs chimera vs vmd V. Kumar (Wed Dec 02 2015 - 17:16:46 CST)
- measure contacts not working as expected Bryan Roessler (Wed Dec 02 2015 - 16:51:04 CST)
- Loading .vel files into vmd Ben Rousseau (Wed Dec 02 2015 - 11:42:00 CST)
- Guessbonds and retype bonds Karteek Kumar (Tue Dec 01 2015 - 23:12:30 CST)
- new structure file James Lord (Mon Nov 30 2015 - 05:27:35 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Francesco Pietra (Fri Nov 27 2015 - 10:18:28 CST)
- Possible memory leak with adding and deleting molecules frequently Daniel M鰈ler (Fri Nov 27 2015 - 04:33:06 CST)
- TIP4P and CHARMM27 Francesco Pietra (Thu Nov 26 2015 - 15:50:52 CST)
- Fwd: TIP4P and CHARMM27 Francesco Pietra (Fri Nov 27 2015 - 09:17:35 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Jim Phillips (Mon Nov 30 2015 - 16:21:44 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Francesco Pietra (Tue Dec 01 2015 - 03:22:31 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Francesco Pietra (Wed Dec 02 2015 - 11:47:58 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Peter Freddolino (Wed Dec 02 2015 - 12:51:43 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Francesco Pietra (Thu Dec 03 2015 - 12:19:58 CST)
- Re: namd-l: Fwd: TIP4P and CHARMM27 Jim Phillips (Mon Nov 30 2015 - 16:21:44 CST)
- Fwd: TIP4P and CHARMM27 Francesco Pietra (Fri Nov 27 2015 - 09:17:35 CST)
- vmd killed - memory problems? Frank Zack (Thu Nov 26 2015 - 06:30:57 CST)
- Re: fitting a line to 3D data points Vlad Cojocaru (Thu Nov 26 2015 - 02:18:55 CST)
- fitting a line to 3D data points Vlad Cojocaru (Wed Nov 25 2015 - 10:10:30 CST)
- Problem visualizing a pdbqt file generated by AutoDockTools Gustavo Seabra (Wed Nov 25 2015 - 06:59:53 CST)
- RE: Problem visualizing a pdbqt file generated by AutoDockTools Bennion, Brian (Wed Nov 25 2015 - 08:54:10 CST)
- Re: Problem visualizing a pdbqt file generated by AutoDockTools Gustavo Seabra (Wed Nov 25 2015 - 10:41:57 CST)
- Re: Problem visualizing a pdbqt file generated by AutoDockTools Gustavo Seabra (Wed Nov 25 2015 - 12:27:52 CST)
- Re: Problem visualizing a pdbqt file generated by AutoDockTools John Stone (Wed Dec 02 2015 - 16:51:09 CST)
- RE: Problem visualizing a pdbqt file generated by AutoDockTools Bennion, Brian (Wed Dec 02 2015 - 17:41:25 CST)
- Re: Problem visualizing a pdbqt file generated by AutoDockTools Gustavo Seabra (Wed Nov 25 2015 - 10:41:57 CST)
- RE: Problem visualizing a pdbqt file generated by AutoDockTools Bennion, Brian (Wed Nov 25 2015 - 08:54:10 CST)
- Stride for large structures Tristan Croll (Wed Nov 25 2015 - 02:04:50 CST)
- Minimum content/format of PSF file to specify bonds? Bret Hess (Mon Nov 23 2015 - 10:55:22 CST)
- Re: Minimum content/format of PSF file to specify bonds? Axel Kohlmeyer (Mon Nov 23 2015 - 11:29:58 CST)
- Re: Minimum content/format of PSF file to specify bonds? J茅r么me H茅nin (Mon Nov 23 2015 - 11:52:04 CST)
- Re: Minimum content/format of PSF file to specify bonds? Josh Vermaas (Mon Nov 23 2015 - 13:43:08 CST)
- possible issue with specden package Ana Celia Vila Verde (Mon Nov 23 2015 - 09:19:35 CST)
- output of salt bridge plugin Shyno Mathew (Sun Nov 22 2015 - 22:40:44 CST)
- Attractive or repulsive with Namd Energy? sunyeping (Sun Nov 22 2015 - 20:15:06 CST)
- Re: Attractive or repulsive with Namd Energy? J茅r么me H茅nin (Mon Nov 23 2015 - 03:33:30 CST)
- volmap parameters JhonY. I. (Sat Nov 21 2015 - 20:52:10 CST)
- periodic boundry in movie James Lord (Fri Nov 20 2015 - 02:45:52 CST)
- Using the -updatesel parameter in namdenergy Atreya Dey (Fri Nov 20 2015 - 01:49:58 CST)
- Changing the color of some atoms Majid Shahbabaei (Thu Nov 19 2015 - 22:54:49 CST)
- loading a several structures in the same time Marta Wisniewska (Wed Nov 18 2015 - 16:46:01 CST)
- extract certain part of atoms into separate file Albert (Wed Nov 18 2015 - 09:49:53 CST)
- Fwd: Compiling VMD with python interpreter on MacOSX kskeby (Wed Nov 18 2015 - 08:29:45 CST)
- FFTK dihedral scan Chitrak Gupta (Wed Nov 18 2015 - 08:07:57 CST)
- Re: FFTK dihedral scan Mayne, Christopher G (Wed Nov 18 2015 - 14:08:51 CST)
- Re: FFTK dihedral scan Chitrak Gupta (Wed Nov 18 2015 - 14:31:22 CST)
- Re: FFTK dihedral scan Mayne, Christopher G (Thu Nov 19 2015 - 15:23:27 CST)
- Re: FFTK dihedral scan Chitrak Gupta (Fri Nov 20 2015 - 20:48:25 CST)
- Re: FFTK dihedral scan Mayne, Christopher G (Sat Nov 21 2015 - 09:35:26 CST)
- Re: FFTK dihedral scan Chitrak Gupta (Sat Nov 21 2015 - 10:41:55 CST)
- Re: FFTK dihedral scan Mayne, Christopher G (Sat Nov 21 2015 - 10:44:49 CST)
- Re: FFTK dihedral scan Chitrak Gupta (Wed Nov 18 2015 - 14:31:22 CST)
- Re: FFTK dihedral scan Mayne, Christopher G (Wed Nov 18 2015 - 14:08:51 CST)
- Error while opening dump file Dive, Aniruddha Mukund (Tue Nov 17 2015 - 19:05:10 CST)
- vmd 1.9.3 A Christian Wohlschlager (Tue Nov 17 2015 - 01:31:46 CST)
- Error (incompatible tcl8.5.so) when installing VMD plugins Xinqiang Ding (Sat Nov 14 2015 - 07:09:59 CST)
- Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 16:48:21 CST)
- Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 18:14:28 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? John Stone (Fri Nov 13 2015 - 19:05:34 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 19:28:39 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? John Stone (Fri Nov 13 2015 - 20:17:53 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 21:24:25 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 22:20:15 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 22:55:11 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? John Stone (Sat Nov 14 2015 - 09:51:58 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Sun Nov 15 2015 - 04:32:42 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Sun Nov 15 2015 - 18:45:43 CST)
- RE: Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Sun Nov 15 2015 - 20:22:38 CST)
- Re: Re: namd-l: On-the-fly modification of tclforces script? John Stone (Fri Nov 13 2015 - 19:05:34 CST)
- Re: namd-l: On-the-fly modification of tclforces script? Tristan Croll (Fri Nov 13 2015 - 18:14:28 CST)
- VDW-radius-and-Interstitial-Space Chowdhury, Sanjib Chandra (Tue Nov 10 2015 - 19:10:18 CST)
- what is difference between "TOTAL", 鈥淭OTAL2" and "POTENTIAL" in the VMD plugin NAMD Plot? sunyeping (Mon Nov 09 2015 - 02:22:23 CST)
- can I change the axes type to look like something like a graduated coordinate? Nima Soltani (Sun Nov 08 2015 - 15:23:51 CST)
- VMD script variable is dipak sanap (Fri Nov 06 2015 - 03:56:41 CST)
- velocity array accessible for any loaded molecule? JC Gumbart (Thu Nov 05 2015 - 19:56:46 CST)
- Re: Query for eliminating proteins with unusual amino acids Akshay Bhatnagar (Thu Nov 05 2015 - 18:25:59 CST)
- Fwd: Query for eliminating proteins with unusual amino acids Akshay Bhatnagar (Thu Nov 05 2015 - 18:19:18 CST)
- Query for eliminating proteins with unusual amino acids Akshay Bhatnagar (Wed Nov 04 2015 - 23:46:02 CST)
- Charge optimization in ffTK Amira Yu (Wed Nov 04 2015 - 09:09:39 CST)
- RMSD per residue of docked molecule Evandro Semighini (Wed Nov 04 2015 - 07:08:34 CST)
- Shifting the Geometric Center of entire set of molecules to origin Sourav Ray (Wed Nov 04 2015 - 04:33:58 CST)
- Re: Shifting the Geometric Center of entire set of molecules to origin Tristan Croll (Wed Nov 04 2015 - 05:38:44 CST)
- RE: Shifting the Geometric Center of entire set of molecules to origin Joaquim Rui de Castro Rodrigues (Wed Nov 04 2015 - 06:14:13 CST)
- Re: Shifting the Geometric Center of entire set of molecules to origin Tim Lo (Fri Nov 06 2015 - 22:38:19 CST)
- Tracing on color by properties Tristan Croll (Wed Nov 04 2015 - 02:54:49 CST)
- Best VMD install for El Capitan OS X? Eiros Zamora, Juan (Mon Nov 02 2015 - 03:35:36 CST)
- Need help in selection Kshatresh Dutta Dubey (Mon Nov 02 2015 - 03:12:13 CST)
- Problems with vmd plugin namdenergy output sunyeping (Mon Nov 02 2015 - 03:06:32 CST)
- Making high quality pictures: How to increase the number of samples? Lai, Jonathan (Sun Nov 01 2015 - 16:34:45 CST)
- www.tcl.tk DNS taken by cybersquatter... John Stone (Fri Oct 30 2015 - 16:47:17 CDT)
- ffTK charge optimizations Amira Yu (Fri Oct 30 2015 - 09:22:24 CDT)
- netcdf trajectory file Atila Petrosian (Fri Oct 30 2015 - 02:22:12 CDT)
- Re: netcdf trajectory file Diego Vazquez (Fri Oct 30 2015 - 04:02:57 CDT)
- Re: netcdf trajectory file Atila Petrosian (Fri Oct 30 2015 - 06:17:27 CDT)
- Re: netcdf trajectory file Diego Vazquez (Fri Oct 30 2015 - 07:21:19 CDT)
- Re: netcdf trajectory file Atila Petrosian (Fri Oct 30 2015 - 07:46:10 CDT)
- Re: netcdf trajectory file Axel Kohlmeyer (Fri Oct 30 2015 - 08:28:50 CDT)
- Re: netcdf trajectory file Atila Petrosian (Fri Oct 30 2015 - 08:42:20 CDT)
- Re: netcdf trajectory file zoran (Fri Oct 30 2015 - 09:35:26 CDT)
- Re: netcdf trajectory file zoran (Fri Oct 30 2015 - 08:17:45 CDT)
- Re: netcdf trajectory file Diego Vazquez (Fri Oct 30 2015 - 08:19:32 CDT)
- Re: netcdf trajectory file Atila Petrosian (Fri Oct 30 2015 - 06:17:27 CDT)
- Re: netcdf trajectory file Diego Vazquez (Fri Oct 30 2015 - 04:02:57 CDT)
- Molefacture & Six-Character Atom Types Eric Schibli (Wed Oct 28 2015 - 21:52:09 CDT)
- fftk using Terachem? Tristan Croll (Wed Oct 28 2015 - 20:25:55 CDT)
- Including two parameters for protein-ligand simulation Nikhil Maroli (Wed Oct 28 2015 - 01:52:30 CDT)
- FFTK abort charge calculation. Eric Schibli (Tue Oct 27 2015 - 16:38:56 CDT)
- how to measure the thickness of the water shell sunyeping (Tue Oct 27 2015 - 00:50:48 CDT)
- script for plotting trajectories Aris Marcolongo (Mon Oct 26 2015 - 06:02:27 CDT)
- Re: script for plotting trajectories Aris Marcolongo (Mon Oct 26 2015 - 15:06:07 CDT)
- Re: script for plotting trajectories Axel Kohlmeyer (Mon Oct 26 2015 - 15:39:37 CDT)
- Re: script for plotting trajectories Aris Marcolongo (Mon Oct 26 2015 - 17:04:21 CDT)
- Re: script for plotting trajectories Axel Kohlmeyer (Mon Oct 26 2015 - 17:10:41 CDT)
- Re: script for plotting trajectories Aris Marcolongo (Mon Oct 26 2015 - 17:25:40 CDT)
- Re: script for plotting trajectories Axel Kohlmeyer (Mon Oct 26 2015 - 17:37:04 CDT)
- Re: script for plotting trajectories Aris Marcolongo (Mon Oct 26 2015 - 17:42:25 CDT)
- Re: script for plotting trajectories Axel Kohlmeyer (Mon Oct 26 2015 - 15:39:37 CDT)
- Re: script for plotting trajectories Aris Marcolongo (Mon Oct 26 2015 - 15:06:07 CDT)
- Errors in display yunshi11 . (Mon Oct 26 2015 - 00:19:59 CDT)
- Writing Wrapped coordinates to a xyz file using TCL script Abhishek Bagusetty (Sat Oct 24 2015 - 14:19:36 CDT)
- catdcd in VMD JhonY. I. (Sat Oct 24 2015 - 10:26:53 CDT)
- PLO2 Patch Francesco Greco (Sat Oct 24 2015 - 09:44:14 CDT)
- CHARMM parameters for iodide and bromide Stojanoski, Vlatko (Fri Oct 23 2015 - 12:10:58 CDT)
- GPU accelerated MD Nikhil Maroli (Fri Oct 23 2015 - 04:12:24 CDT)
- gromacs to charmm conversion Francesco Pietra (Fri Oct 23 2015 - 02:34:15 CDT)
- Problem of VMD in ubuntu 14.04 Bonakala Satyanarayana (Fri Oct 23 2015 - 01:46:40 CDT)
- VMD: Problems loading PDB Files from behind a proxy server Greipel.Joachim_at_mh-hannover.de (Fri Oct 23 2015 - 01:15:53 CDT)
- Tcl script for hydration shell of backbone carbonyl oxygen for whole trajectory. dipak sanap (Thu Oct 22 2015 - 01:06:39 CDT)
- Double bond in VMD Parvez Mh (Wed Oct 21 2015 - 17:45:25 CDT)
- Topology for drugs to do MD after docking Nikhil Maroli (Wed Oct 21 2015 - 11:40:04 CDT)
- Re: Topology for drugs to do MD after docking Mayne, Christopher G (Wed Oct 21 2015 - 14:44:18 CDT)
- Re: Topology for drugs to do MD after docking Mayne, Christopher G (Thu Oct 22 2015 - 09:39:02 CDT)
- RE: Topology for drugs to do MD after docking Richard Wood (Thu Oct 22 2015 - 11:08:44 CDT)
- Re: Topology for drugs to do MD after docking Nikhil Maroli (Thu Oct 22 2015 - 12:15:49 CDT)
- Re: Topology for drugs to do MD after docking Axel Kohlmeyer (Thu Oct 22 2015 - 12:39:04 CDT)
- Re: Topology for drugs to do MD after docking Nikhil Maroli (Thu Oct 22 2015 - 12:59:02 CDT)
- Re: Topology for drugs to do MD after docking Mayne, Christopher G (Thu Oct 22 2015 - 09:39:02 CDT)
- Re: Topology for drugs to do MD after docking Mayne, Christopher G (Wed Oct 21 2015 - 14:44:18 CDT)
- assign bond color based on bond type Zhang, Tao (Wed Oct 21 2015 - 10:53:26 CDT)
- Regarding generating force field Saumik Sen (Wed Oct 21 2015 - 01:50:33 CDT)
- TachyonL-Optix render command Edoardo Baldi (Tue Oct 20 2015 - 12:45:31 CDT)
- Problem on merging multi-psf files into one wliu (Tue Oct 20 2015 - 00:47:12 CDT)
- Plot waters vs time in a trajectory Daniela Rivas (Mon Oct 19 2015 - 15:05:24 CDT)
- How can I trace an oxygen atom in VMD? Majid Shahbabaei (Mon Oct 19 2015 - 00:52:11 CDT)
- problem of x3d in chrome and IE Albert (Sun Oct 18 2015 - 13:11:26 CDT)
- viewMaster plugin Nuno Sousa Cerqueira (Sun Oct 18 2015 - 12:11:41 CDT)
- Re: namd-l: Problem on merging multi-psf files into one Axel Kohlmeyer (Sun Oct 18 2015 - 09:39:43 CDT)
- can we export VMD scene as webGL file? Albert (Fri Oct 16 2015 - 16:22:59 CDT)
- Re: can we export VMD scene as webGL file? John Stone (Fri Oct 16 2015 - 16:34:10 CDT)
- Re: can we export VMD scene as webGL file? Albert (Fri Oct 16 2015 - 16:52:19 CDT)
- Re: can we export VMD scene as webGL file? John Stone (Fri Oct 16 2015 - 17:01:34 CDT)
- Re: can we export VMD scene as webGL file? Albert (Sat Oct 17 2015 - 02:22:56 CDT)
- Re: can we export VMD scene as webGL file? Albert (Sat Oct 17 2015 - 02:23:18 CDT)
- Re: can we export VMD scene as webGL file? Albert (Sat Oct 17 2015 - 02:23:54 CDT)
- Re: can we export VMD scene as webGL file? Albert (Fri Oct 16 2015 - 16:52:19 CDT)
- Re: can we export VMD scene as webGL file? John Stone (Fri Oct 16 2015 - 16:34:10 CDT)
- Regarding generating psf file Saumik Sen (Thu Oct 15 2015 - 03:49:50 CDT)
- Consistent size Eric Smoll (Wed Oct 14 2015 - 21:33:58 CDT)
- Ideal charge optimization strategy for atoms with existing ff parameters Bryan Roessler (Tue Oct 13 2015 - 14:08:02 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Mayne, Christopher G (Fri Oct 16 2015 - 02:50:39 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Bryan Roessler (Fri Oct 16 2015 - 10:01:53 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Bryan Roessler (Mon Oct 19 2015 - 09:45:32 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Mayne, Christopher G (Mon Oct 19 2015 - 09:50:09 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Chitrak Gupta (Mon Oct 19 2015 - 10:59:52 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Bryan Roessler (Tue Oct 20 2015 - 15:34:48 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Chitrak Gupta (Wed Oct 21 2015 - 10:45:08 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Bryan Roessler (Fri Oct 16 2015 - 10:01:53 CDT)
- Re: Ideal charge optimization strategy for atoms with existing ff parameters Mayne, Christopher G (Fri Oct 16 2015 - 02:50:39 CDT)
- Cyclic peptide nanotube psf second mail Nikhil Maroli (Tue Oct 13 2015 - 00:42:55 CDT)
- AW: query regarding phi-psi range for asigning secondary structure Norman Geist (Mon Oct 12 2015 - 01:44:23 CDT)
- Problems with S-Adenosyl-L-Methionine / SAM Topology & Parameter for MD simulations Daan Mevius (Sun Oct 11 2015 - 06:20:19 CDT)
- query regarding phi-psi range for asigning secondary structure Atanu Maity (Fri Oct 09 2015 - 01:43:43 CDT)
- Change color of drawn object Ebert Maximilian (Thu Oct 08 2015 - 13:48:07 CDT)
- catdcd - writing DCD with box info from namdbin and xsc files? Brian Radak (Thu Oct 08 2015 - 10:03:58 CDT)
- about opls-aam ff for small molecules Francesco Pietra (Wed Oct 07 2015 - 16:16:15 CDT)
- Draw cylinder with two different diameters for the endpoints (cone) Ebert Maximilian (Wed Oct 07 2015 - 11:21:08 CDT)
- Re: namd-l: Regarding problem in psfgen of heparin Tristan Croll (Tue Oct 06 2015 - 18:44:21 CDT)
- Announcement: call for abstracts (**extended deadline**): SC15 workshop "Producing High-Performance and Sustainable Software for Molecular Simulation" Arno Proeme (Mon Oct 05 2015 - 19:33:18 CDT)
- VMD 1.9.2 32 bit Linux Gianluca Interlandi (Fri Oct 02 2015 - 18:00:35 CDT)
- Re: VMD Tricky selection of protein water bridge (2 bridge waters) Yarrow Madrona (Fri Oct 02 2015 - 17:21:23 CDT)
- OpenDX file format website down: What do the three values at each grid point represent Ebert Maximilian (Fri Oct 02 2015 - 12:36:27 CDT)
- Re: OpenDX file format website down: What do the three values at each grid point represent Axel Kohlmeyer (Fri Oct 02 2015 - 13:09:36 CDT)
- Cyclic peptide Nanotube Nikhil Maroli (Fri Oct 02 2015 - 08:52:59 CDT)
- script error Nikhil Maroli (Fri Oct 02 2015 - 08:44:13 CDT)
- sqlite and vmd Nuno Sousa Cerqueira (Fri Oct 02 2015 - 08:39:08 CDT)
- PSF for cyclic peptide nanotube Nikhil Maroli (Fri Oct 02 2015 - 08:36:47 CDT)
- VMD with XTC trajectory and stride Ebert Maximilian (Thu Oct 01 2015 - 11:56:13 CDT)
- Re: namd-l: Atomselect within radial pair distribution function g(r) Chitrak Gupta (Wed Sep 30 2015 - 08:09:16 CDT)
- scipt for loading multiple copies in psfgen Prof. Eddie (Tue Sep 29 2015 - 12:59:40 CDT)
- Re: VMD crash when opening sunyeping (Tue Sep 29 2015 - 11:39:27 CDT)
- VMD crash when opening sunyeping (Tue Sep 29 2015 - 11:22:46 CDT)
- multiple parameterized ligands Prof. Eddie (Mon Sep 28 2015 - 18:57:37 CDT)
- ffTK & transition metals Francesco Pietra (Sun Sep 27 2015 - 13:20:28 CDT)
- Re: Why can VMD not be opened? sunyeping (Sun Sep 27 2015 - 13:03:32 CDT)
- Why can VMD not be opened? sunyeping (Sun Sep 27 2015 - 12:07:50 CDT)
- psf for cyclic peptide nanotube:psf ready for one ring but required for 8 ring Nikhil Maroli (Sat Sep 26 2015 - 06:50:31 CDT)
- PSF for CYCLIC PEPTIDE : Nikhil Maroli (Sat Sep 26 2015 - 05:45:17 CDT)
- Problems_calling_VMD_remotely_from_cluster Payal Chatterjee (Fri Sep 25 2015 - 17:32:25 CDT)
- REG: adding hydrogens using TCL surya narayanan chandrasekaran (Fri Sep 25 2015 - 11:11:41 CDT)
- Segmentation fault error only when executing command within script Eric Smoll (Thu Sep 24 2015 - 21:15:28 CDT)
- fftk and impropers Prof. Eddie (Thu Sep 24 2015 - 08:04:42 CDT)
- Implicit Ligand Sampling: How to get energy along a reaction coordinate? Ebert Maximilian (Wed Sep 23 2015 - 14:11:06 CDT)
- SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 13:22:06 CDT)
- Re: SSD vs SSHD vs mechanical John Stone (Wed Sep 23 2015 - 13:37:27 CDT)
- Re: SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 13:57:22 CDT)
- Re: SSD vs SSHD vs mechanical John Stone (Wed Sep 23 2015 - 14:11:51 CDT)
- Re: SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 14:24:18 CDT)
- Re: SSD vs SSHD vs mechanical John Stone (Wed Sep 23 2015 - 15:44:15 CDT)
- Re: SSD vs SSHD vs mechanical Axel Kohlmeyer (Wed Sep 23 2015 - 14:52:43 CDT)
- Re: SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 15:33:38 CDT)
- Re: SSD vs SSHD vs mechanical John Stone (Wed Sep 23 2015 - 15:50:18 CDT)
- Re: SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 16:28:07 CDT)
- Re: SSD vs SSHD vs mechanical John Stone (Wed Sep 23 2015 - 16:50:55 CDT)
- Re: SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 17:41:11 CDT)
- Re: SSD vs SSHD vs mechanical Gianluca Interlandi (Wed Sep 23 2015 - 13:57:22 CDT)
- RE: SSD vs SSHD vs mechanical James Kress (Thu Sep 24 2015 - 10:09:31 CDT)
- Re: SSD vs SSHD vs mechanical John Stone (Wed Sep 23 2015 - 13:37:27 CDT)
- visualising unit cell "plus a little more" Francesca L鴑stad Bleken (Wed Sep 23 2015 - 04:34:52 CDT)
- Cannot Remote Display on Ubuntu Christian Wohlschlager (Tue Sep 22 2015 - 02:30:12 CDT)
- Cannot Remote Display on Ububtu Christian Wohlschlager (Tue Sep 22 2015 - 00:54:34 CDT)
- volutil: -combinepmf - Bug? Simon D眉rr (Mon Sep 21 2015 - 13:39:30 CDT)
- mergemols not combining topology information Frank Zack (Mon Sep 21 2015 - 07:06:02 CDT)
- Which VMD AND NAMD should install Nikhil Maroli (Sat Sep 19 2015 - 01:57:30 CDT)
- error with tutorial beginer required help Nikhil Maroli (Fri Sep 18 2015 - 02:42:58 CDT)
- How to remove the simulation box M K (Thu Sep 17 2015 - 22:22:52 CDT)
- Plugin to read DCD files Gianluca Interlandi (Thu Sep 17 2015 - 17:35:29 CDT)
- ffTK: Charge optimization Amy Rice (Thu Sep 17 2015 - 14:39:05 CDT)
- -restrict option in measure sasa Chitrak Gupta (Wed Sep 16 2015 - 12:42:26 CDT)
- Bonds appearing as elongated lines Sourav Ray (Wed Sep 16 2015 - 04:34:43 CDT)
- PMEPot plugin: epilon-surface Anders Gabrielsson (Wed Sep 16 2015 - 04:29:29 CDT)
- psfgen error: FAILED TO RECOGNIZE LONEPAIR Monika Madhavi (Wed Sep 16 2015 - 04:10:11 CDT)
- align molecules using "anchor" atoms Xing (Tue Sep 15 2015 - 10:34:25 CDT)
- Autopsf problem Kevin C Chan (Tue Sep 15 2015 - 08:53:57 CDT)
- fftk Bond guassian input for hessian calculation fvlieffe (Tue Sep 15 2015 - 06:07:14 CDT)
- conversion of topology entries from charmm str format to vmd psfgen format Monika Madhavi (Tue Sep 15 2015 - 05:40:06 CDT)
- New user encounter an error as follows ;please guide me :: Tutorial Nikhil Maroli (Tue Sep 15 2015 - 02:56:47 CDT)
- New user encounter an error as follows ;please guide me :: Tutorial Nikhil Maroli (Tue Sep 15 2015 - 00:37:12 CDT)
- Align only translation not rotation Simon D眉rr (Mon Sep 14 2015 - 10:16:08 CDT)
- Merge PDB files to create a single PDB and PSF file Ern Seang Ong (Mon Sep 14 2015 - 02:10:22 CDT)
- ILS: Problems with the alignment Simon D眉rr (Fri Sep 11 2015 - 15:42:26 CDT)
- ILS: clash exclusion distance Simon D眉rr (Fri Sep 11 2015 - 12:25:46 CDT)
- FFTK Bond optimization Chitrak Gupta (Fri Sep 11 2015 - 08:26:42 CDT)
- Re: FFTK Bond optimization Mayne, Christopher G (Mon Sep 14 2015 - 08:34:39 CDT)
- Re: FFTK Bond optimization Chitrak Gupta (Tue Sep 22 2015 - 18:06:30 CDT)
- Re: FFTK Bond optimization Chitrak Gupta (Tue Sep 22 2015 - 18:18:00 CDT)
- Re: FFTK Bond optimization Mayne, Christopher G (Wed Sep 23 2015 - 09:56:01 CDT)
- Re: FFTK Bond optimization Chitrak Gupta (Fri Sep 25 2015 - 15:43:45 CDT)
- Re: FFTK Bond optimization Chitrak Gupta (Fri Sep 25 2015 - 15:44:39 CDT)
- Re: FFTK Bond optimization Mayne, Christopher G (Fri Sep 25 2015 - 16:18:52 CDT)
- Re: FFTK Bond optimization Mayne, Christopher G (Fri Sep 25 2015 - 16:14:33 CDT)
- Re: FFTK Bond optimization Chitrak Gupta (Tue Sep 22 2015 - 18:06:30 CDT)
- Re: FFTK Bond optimization Mayne, Christopher G (Mon Sep 14 2015 - 08:34:39 CDT)
- Out of memory when loading 700 MB trajectory file Lee-Ping Wang (Fri Sep 11 2015 - 04:35:12 CDT)
- psfgen error: FAILED TO RECOGNIZE LONEPAIR Monika Madhavi (Fri Sep 11 2015 - 00:48:51 CDT)
- Fwd: Inviting applications for a new PhD program in Quantitative Biosciences at Georgia Tech JC Gumbart (Wed Sep 09 2015 - 18:15:34 CDT)
- How to display frames title ? 脡ric Germaneau (Wed Sep 09 2015 - 16:43:44 CDT)
- Please vote for VMD in HPCWire Reader's Choice Awards.... John Stone (Wed Sep 09 2015 - 14:03:32 CDT)
- fftk charge validation fvlieffe (Wed Sep 09 2015 - 04:58:59 CDT)
- FFTK water interaction Chitrak Gupta (Tue Sep 08 2015 - 10:54:19 CDT)
- Re: FFTK water interaction Mayne, Christopher G (Tue Sep 08 2015 - 12:48:50 CDT)
- Re: FFTK water interaction Chitrak Gupta (Tue Sep 08 2015 - 14:57:55 CDT)
- Re: FFTK water interaction Mayne, Christopher G (Tue Sep 08 2015 - 15:10:03 CDT)
- Re: FFTK water interaction Chitrak Gupta (Wed Sep 09 2015 - 08:17:50 CDT)
- Re: FFTK water interaction Mayne, Christopher G (Wed Sep 09 2015 - 09:12:58 CDT)
- Re: FFTK water interaction Chitrak Gupta (Thu Sep 10 2015 - 12:39:01 CDT)
- Re: FFTK water interaction Mayne, Christopher G (Thu Sep 10 2015 - 13:41:26 CDT)
- Re: FFTK water interaction Chitrak Gupta (Tue Sep 08 2015 - 14:57:55 CDT)
- Re: FFTK water interaction Mayne, Christopher G (Tue Sep 08 2015 - 12:48:50 CDT)
- unable to view .pdb file Raag Saluja (Tue Sep 08 2015 - 08:16:51 CDT)
- Selecting atoms in the RMSD tool Dimitrova, Maria (Thu Sep 03 2015 - 07:34:49 CDT)
- Rendering options Eric Smoll (Wed Sep 02 2015 - 15:17:11 CDT)
- FFTK initial par file is empty Chitrak Gupta (Wed Sep 02 2015 - 11:05:47 CDT)
- ILS on GPU Cluster - Exceeded MAX_BINOFFSETS for CUDA kernel Simon D眉rr (Wed Sep 02 2015 - 09:42:03 CDT)
- APPCRASH when loading a big trajectory file (.dcd) into VMD Ern Seang Ong (Tue Sep 01 2015 - 17:49:45 CDT)
- Calculating distances from command line VMD 1.9.2 debra ragland (Tue Sep 01 2015 - 08:08:11 CDT)
- Distances from the command line VMD 1.9.2 debra ragland (Tue Sep 01 2015 - 07:49:25 CDT)
- How to close the box of situs electron density map? sunyeping (Mon Aug 31 2015 - 22:18:55 CDT)
- Set "center" in script Eric Smoll (Sat Aug 29 2015 - 01:10:04 CDT)
- How to set a common camera state Eric Smoll (Fri Aug 28 2015 - 23:15:22 CDT)
- salt bridge cutoff distance LW (Fri Aug 28 2015 - 04:30:00 CDT)
- why mdff griddx command cannot generate .dx file sunyeping (Fri Aug 28 2015 - 03:46:48 CDT)
- NAMD energy Shubhadip Das (Thu Aug 27 2015 - 09:15:34 CDT)
- 1.9.3 Version Christian Wohlschlager (Thu Aug 27 2015 - 08:22:51 CDT)
- Calculate torsional angle with big_dcd adding a boolean control for pyrimidines and purines selection Mahad Gatti (Wed Aug 26 2015 - 05:41:09 CDT)
- Interactive Optix ray tracing on multiple GPUs? Anders Gabrielsson (Tue Aug 25 2015 - 09:08:04 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? Anders Gabrielsson (Wed Aug 26 2015 - 10:19:26 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? John Stone (Wed Aug 26 2015 - 10:37:03 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? Anders Gabrielsson (Wed Aug 26 2015 - 10:56:20 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? John Stone (Wed Aug 26 2015 - 11:10:29 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? Anders Gabrielsson (Wed Aug 26 2015 - 11:18:18 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? John Stone (Wed Aug 26 2015 - 10:37:03 CDT)
- Re: Interactive Optix ray tracing on multiple GPUs? Anders Gabrielsson (Wed Aug 26 2015 - 10:19:26 CDT)
- VMD cannot display electron density map 瀛欎笟骞 (Sun Aug 23 2015 - 13:11:01 CDT)
- embedding proteins in membrane: child killed: segmentation violation Atila Petrosian (Sun Aug 23 2015 - 09:59:08 CDT)
- Bader Charge Analysis Ozan Dernek (Fri Aug 21 2015 - 10:05:18 CDT)
- removing bonds across periodic boundary in a video Charlesworth, Henry (Thu Aug 20 2015 - 12:44:22 CDT)
- ffTK and geometry optimization level Francesco Pietra (Thu Aug 20 2015 - 10:13:52 CDT)
- Namd Plot Plugin Daniela Rivas (Thu Aug 20 2015 - 08:54:58 CDT)
- Python.h error when compile VMD-1.9.2 sunyeping (Tue Aug 18 2015 - 21:26:54 CDT)
- How to extract data from NAMD log file for viscosity calculation Ern Seang Ong (Tue Aug 18 2015 - 20:38:57 CDT)
- Plot of distance between two atoms vs frame number Stojanoski, Vlatko (Tue Aug 18 2015 - 12:35:48 CDT)
- (no subject) Ozan Dernek (Tue Aug 18 2015 - 09:31:29 CDT)
- Hydrogen bonds plugin for liquid water Gupta, S.S. (Somil) (Tue Aug 18 2015 - 04:34:10 CDT)
- paratool Prof. Eddie (Mon Aug 17 2015 - 14:52:20 CDT)
- ffTK problems with Gaussian OPT Francesco Pietra (Sun Aug 16 2015 - 05:43:43 CDT)
- nvidia cuda mismatch andrea spitaleri (Thu Aug 13 2015 - 10:58:39 CDT)
- vmd freezes for certain files on MacOs 10.10.4 Beat Meier (Thu Aug 13 2015 - 02:17:10 CDT)
- RE: Delete redundant bonds in water molecule Xiaohui She (Wed Aug 12 2015 - 14:25:05 CDT)
- Delete redundant bonds in water molecule Xiaohui She (Wed Aug 12 2015 - 11:32:31 CDT)
- Problem with NAMD, fftk and Windows 7 64bits ABEL Stephane 175950 (Wed Aug 12 2015 - 08:17:26 CDT)
- rlwrap/ffTK issues with vmd 1.9.2 Francesco Pietra (Wed Aug 12 2015 - 02:49:01 CDT)
- why vmd cannot load situs type file in MDFF? sunyeping (Tue Aug 11 2015 - 10:19:53 CDT)
- Merging two structures with duplicate segment names using TCL/Tk Console Ash Johnson (Mon Aug 10 2015 - 19:29:31 CDT)
- Resuming changes in MOLEFACTURE Francesco Pietra (Mon Aug 10 2015 - 12:25:43 CDT)
- writing initial coordinates in Amber format Neelanjana Sengupta (Sat Aug 08 2015 - 01:40:04 CDT)
- ACS COMP division travel awards John Stone (Fri Aug 07 2015 - 11:35:14 CDT)
- Installing VMD on MACOSX 10.10.4 Yosemite Abhishek Bagusetty (Fri Aug 07 2015 - 09:36:19 CDT)
- About mdffi cc Kevin C Chan (Thu Aug 06 2015 - 01:12:27 CDT)
- 3dconnexion spacemouse pro and vmd on fedora 21 Bennion, Brian (Wed Aug 05 2015 - 15:02:54 CDT)
- Tilting helix in VMD Jessica Sarver (Wed Aug 05 2015 - 14:11:16 CDT)
- .mdcrd to .trr conversion problem Vishal Nemaysh (Wed Aug 05 2015 - 02:00:59 CDT)
- VMD movie error Kshatresh Dutta Dubey (Tue Aug 04 2015 - 17:00:51 CDT)
- VMD Composite Extension/swrast Error on Centos 6.6 Joseph Baker (Mon Aug 03 2015 - 16:31:41 CDT)
- Exporting Average Structure to .pdb file Kuiper, Ben (Mon Aug 03 2015 - 12:24:08 CDT)
- Hydrogen bond angle debra ragland (Mon Aug 03 2015 - 11:58:16 CDT)
- Get XST or XSC from NAMDenergy plugin? Aryan Vahedi-Faridi (Sun Aug 02 2015 - 19:30:52 CDT)
- setting the view in VMD Jeeno Jose (Sat Aug 01 2015 - 13:23:35 CDT)
- Script for recursive file execution debra ragland (Fri Jul 31 2015 - 11:48:10 CDT)
- Selective coloring question JeJoon Yeon (Thu Jul 30 2015 - 19:36:27 CDT)
- Using Automatic PSF Builder for Novel Residues Brianna McIntosh (Thu Jul 30 2015 - 17:32:56 CDT)
- pbc join bondlist Jacob Gissinger (Thu Jul 30 2015 - 16:01:23 CDT)
- Unwrap issue, Completely Different Chart Than Expected, Trajectory Compromised Aryan Vahedi-Faridi (Thu Jul 30 2015 - 15:04:12 CDT)
- Question regarding selection of atoms JeJoon Yeon (Wed Jul 29 2015 - 09:21:41 CDT)
- VMD camera feature request: zoom and tilt Charles McAnany (Mon Jul 27 2015 - 11:59:29 CDT)
- Re: 64 bit windows VMD Hart, David Blaine (Mon Jul 27 2015 - 11:16:11 CDT)
- SC'15 Sci viz showcase deadline extension John Stone (Mon Jul 27 2015 - 10:59:14 CDT)
- 64 bit windows VMD Sam Wallace (Mon Jul 27 2015 - 03:06:40 CDT)
- measure contact between com Kevin Chan (Mon Jul 27 2015 - 01:16:45 CDT)
- Question about visualization of multiple frame xyz file JeJoon Yeon (Sun Jul 26 2015 - 22:17:10 CDT)
- VMD - cannot download James Kress (Sun Jul 26 2015 - 17:40:50 CDT)
- Unit cell for clay material Evgeniya Volkova (Sat Jul 25 2015 - 15:55:00 CDT)
- Questions about the optimization of a molecule with fftk ABEL Stephane 175950 (Fri Jul 24 2015 - 08:31:54 CDT)
- Generating PSF for several proteins in one shot Akshay Bhatnagar (Tue Jul 21 2015 - 02:04:36 CDT)
- Re: Generating PSF for several proteins in one shot Ashar Malik (Tue Jul 21 2015 - 02:33:02 CDT)
- Re: Generating PSF for several proteins in one shot Josh Vermaas (Tue Jul 21 2015 - 13:44:49 CDT)
- Re: Generating PSF for several proteins in one shot Akshay Bhatnagar (Thu Jul 23 2015 - 23:33:56 CDT)
- RE: Generating PSF for several proteins in one shot Matthew Stewart (Fri Jul 24 2015 - 01:25:58 CDT)
- Re: Generating PSF for several proteins in one shot Akshay Bhatnagar (Fri Jul 24 2015 - 02:29:08 CDT)
- Re: Generating PSF for several proteins in one shot Felipe Merino (Fri Jul 24 2015 - 07:12:09 CDT)
- Re: Generating PSF for several proteins in one shot Tristan Croll (Fri Jul 24 2015 - 18:00:32 CDT)
- Re: Generating PSF for several proteins in one shot Akshay Bhatnagar (Tue Jul 28 2015 - 01:10:19 CDT)
- Re: Generating PSF for several proteins in one shot Tristan Croll (Tue Jul 28 2015 - 01:16:02 CDT)
- Re: Generating PSF for several proteins in one shot Akshay Bhatnagar (Sat Aug 08 2015 - 03:35:47 CDT)
- Re: Generating PSF for several proteins in one shot Tristan Croll (Sat Aug 08 2015 - 04:55:19 CDT)
- Re: Generating PSF for several proteins in one shot Tristan Croll (Sat Aug 08 2015 - 23:14:31 CDT)
- AW: Generating PSF for several proteins in one shot Daniel M枚ller (Sat Aug 08 2015 - 05:39:58 CDT)
- Re: Generating PSF for several proteins in one shot Josh Vermaas (Tue Jul 21 2015 - 13:44:49 CDT)
- Re: Generating PSF for several proteins in one shot Ashar Malik (Tue Jul 21 2015 - 02:33:02 CDT)
- [jfavre@cscs.ch: SC'15 Scientific Visualization Showcase] John Stone (Mon Jul 20 2015 - 15:35:53 CDT)
- tcl plugins Melvyn Drag (Sat Jul 18 2015 - 20:20:22 CDT)
- BUG REPORT: Malfunctioning of VMD with Yosemite/ Follow up Yasaman Ghadarghadr (Wed Jul 15 2015 - 14:14:31 CDT)
- Modify XYZ reader plugin Christian Leitold (Tue Jul 14 2015 - 11:07:07 CDT)
- fftk autoDetect indices and fvlieffe (Tue Jul 14 2015 - 07:13:10 CDT)
- cvs Christian Wohlschlager (Mon Jul 13 2015 - 02:08:53 CDT)
- Choosing an appropriate isovalue for comparing different systems DEBOSTUTI GHOSHDASTIDAR (Sun Jul 12 2015 - 10:37:35 CDT)
- recovery -e file name w/in vmd Thomas C. Bishop (Fri Jul 10 2015 - 16:05:26 CDT)
- Problem using BigDCD to wrap, unwrap and animate a long MD trajectory KK R (Fri Jul 10 2015 - 14:51:23 CDT)
- Re: Welcome to vmd-l Kyle Mills (Fri Jul 10 2015 - 13:08:48 CDT)
- Finding RMSD of atoms Mehdi Bagherpour (Fri Jul 10 2015 - 12:41:25 CDT)
- Finding RMSD of atoms Mehdi Bagherpour (Fri Jul 10 2015 - 11:49:16 CDT)
- Multiseq display settings Felipe Montecinos (Fri Jul 10 2015 - 11:28:23 CDT)
- Primary structure, Jinasena Hewage (Fri Jul 10 2015 - 10:45:06 CDT)
- a question regarding the signalproc package Ana Celia Vila Verde (Thu Jul 09 2015 - 10:34:08 CDT)
- script rotation of system with graphics Eric Smoll (Wed Jul 08 2015 - 19:17:50 CDT)
- Using BigDCD to wrap, unwrap and animate a long MD trajectory KK R (Wed Jul 08 2015 - 12:52:47 CDT)
- write psf is generating an error Life Sciences Inc (Wed Jul 08 2015 - 11:59:30 CDT)
- Text size in the VMD at high-resolutions Miroslav Krepl (Wed Jul 08 2015 - 11:14:36 CDT)
- Re: Text size in the VMD at high-resolutions John Stone (Thu Jul 09 2015 - 23:20:13 CDT)
- Re: Text size in the VMD at high-resolutions Miroslav Krepl (Fri Jul 10 2015 - 16:29:49 CDT)
- Re: Text size in the VMD at high-resolutions John Stone (Tue Jul 14 2015 - 10:12:18 CDT)
- Re: Text size in the VMD at high-resolutions Miroslav Krepl (Tue Jul 14 2015 - 15:13:26 CDT)
- Re: Text size in the VMD at high-resolutions Miroslav Krepl (Wed Sep 16 2015 - 09:41:29 CDT)
- Re: Text size in the VMD at high-resolutions Dow Hurst (Sat Oct 10 2015 - 22:27:00 CDT)
- Re: Text size in the VMD at high-resolutions John Stone (Mon Oct 12 2015 - 11:34:07 CDT)
- Re: Text size in the VMD at high-resolutions Miroslav Krepl (Fri Jul 10 2015 - 16:29:49 CDT)
- Re: Text size in the VMD at high-resolutions John Stone (Thu Jul 09 2015 - 23:20:13 CDT)
- creating psf file Mai Aamer (Tue Jul 07 2015 - 16:10:29 CDT)
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- Re: Building Plugins to work with Mac Builds John Stone (Mon Jul 06 2015 - 16:42:34 CDT)
- Re: Building Plugins to work with Mac Builds Hart, David Blaine (Mon Jul 06 2015 - 17:26:13 CDT)
- Re: Building Plugins to work with Mac Builds John Stone (Tue Jul 14 2015 - 14:45:46 CDT)
- Re: [EXTERNAL] Re: Building Plugins to work with Mac Builds Hart, David Blaine (Tue Jul 14 2015 - 14:52:02 CDT)
- Re: [EXTERNAL] Re: Building Plugins to work with Mac Builds John Stone (Tue Jul 14 2015 - 15:03:05 CDT)
- Re: Building Plugins to work with Mac Builds Hart, David Blaine (Mon Jul 06 2015 - 17:26:13 CDT)
- Re: Building Plugins to work with Mac Builds John Stone (Mon Jul 06 2015 - 16:42:34 CDT)
- molecule selection along an axis anu chandra (Mon Jul 06 2015 - 10:18:17 CDT)
- should commercial user pay for VMD Albert (Mon Jul 06 2015 - 08:48:50 CDT)
- Energy based coloring of residues Atreya Dey (Mon Jul 06 2015 - 06:28:54 CDT)
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- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Axel Kohlmeyer (Thu Jun 25 2015 - 08:56:29 CDT)
- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Vidyalakshmi CM (Thu Jun 25 2015 - 09:37:36 CDT)
- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Axel Kohlmeyer (Thu Jun 25 2015 - 10:29:11 CDT)
- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Vidyalakshmi CM (Thu Jun 25 2015 - 10:39:21 CDT)
- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Axel Kohlmeyer (Thu Jun 25 2015 - 10:45:51 CDT)
- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Vidyalakshmi CM (Thu Jun 25 2015 - 09:37:36 CDT)
- Re: Viewing gromacs .xtc trajectory 'Error reading timestep, file does not match format' Axel Kohlmeyer (Thu Jun 25 2015 - 08:56:29 CDT)
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- pbc tools Jacob Gissinger (Mon Jun 22 2015 - 11:20:28 CDT)
- Re: PBC unwrap a membrane Kevin C Chan (Sun Jun 21 2015 - 03:55:15 CDT)
- PBC unwrap a membrane Kevin C Chan (Sun Jun 21 2015 - 02:56:21 CDT)
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- Load trajectory file in .sim format Daniela Rivas (Tue Jun 16 2015 - 09:02:13 CDT)
- Merging multiple PDB files BALCZIAK, LOUIS (Mon Jun 15 2015 - 13:24:49 CDT)
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- Water molecules Jinasena Hewage (Fri Jun 12 2015 - 15:51:20 CDT)
- Re: namd-l: FFTK - error Mayne, Christopher G (Fri Jun 12 2015 - 11:52:09 CDT)
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- Re: unwap/wrap failure in recomposing splitted system from periodic cells Josh Vermaas (Thu Jun 11 2015 - 14:31:39 CDT)
- Re: unwap/wrap failure in recomposing splitted system from periodic cells Francesco Pietra (Fri Jun 12 2015 - 02:33:33 CDT)
- Re: unwap/wrap failure in recomposing splitted system from periodic cells Josh Vermaas (Fri Jun 12 2015 - 09:47:24 CDT)
- Re: unwap/wrap failure in recomposing splitted system from periodic cells Francesco Pietra (Fri Jun 12 2015 - 10:53:34 CDT)
- Fwd: unwap/wrap failure in recomposing splitted system from periodic cells Francesco Pietra (Fri Jun 12 2015 - 11:13:50 CDT)
- Re: Fwd: unwap/wrap failure in recomposing splitted system from periodic cells Josh Vermaas (Fri Jun 12 2015 - 11:20:26 CDT)
- Fwd: unwap/wrap failure in recomposing splitted system from periodic cells Francesco Pietra (Fri Jun 12 2015 - 10:57:06 CDT)
- Re: unwap/wrap failure in recomposing splitted system from periodic cells Francesco Pietra (Fri Jun 12 2015 - 02:33:33 CDT)
- Re: unwap/wrap failure in recomposing splitted system from periodic cells Josh Vermaas (Thu Jun 11 2015 - 14:31:39 CDT)
- problem with output format Mehdi Bagherpour (Thu Jun 11 2015 - 05:56:18 CDT)
- finding distance of atoms Mehdi Bagherpour (Wed Jun 10 2015 - 12:12:36 CDT)
- Splitting homotetramer subunits Francesco Pietra (Tue Jun 09 2015 - 06:04:37 CDT)
- Dynamic molecular connectivity Eric Smoll (Fri Jun 05 2015 - 22:31:53 CDT)
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- AW: IR Spectroscopy plugin questions Daniel M枚ller (Thu Jun 04 2015 - 12:57:00 CDT)
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- (no subject) Francesco Pietra (Fri May 29 2015 - 09:35:57 CDT)
- Modification of terminal N-amino and C-carboxyl of peptide Sourav Ray (Thu May 28 2015 - 05:13:17 CDT)
- Re: Alpha-RMSD Jevgenij Raskatov (Wed May 27 2015 - 20:25:27 CDT)
- Re-numbering resID after psfgen Kevin C Chan (Wed May 27 2015 - 00:18:58 CDT)
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- Protein Builder terminus Sourav Ray (Mon May 25 2015 - 02:02:31 CDT)
- where can I find the parameter file for chlorophenols? 丁晗 (Sun May 24 2015 - 21:43:04 CDT)
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- Error while merging structures Sanghamitra Debroy (Sat May 23 2015 - 04:10:08 CDT)
- Re: FFTK-optimization error Mayne, Christopher G (Fri May 22 2015 - 10:21:44 CDT)
- How to find distance between n-terminal c-alpha and c-terminal c-alpha. Seera Suryanarayana (Wed May 20 2015 - 05:29:47 CDT)
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- How to super impose NMR structures Seera Suryanarayana (Wed May 20 2015 - 01:55:44 CDT)
- Announcement: 鈥楬ands On鈥 Workshop on Computational Biophysics (Berkeley, CA, Aug 3-7, 2015) Lela Vukovic (Wed May 20 2015 - 00:06:46 CDT)
- Questions regarding fftk and Gaussian Evandro Semighini (Tue May 19 2015 - 08:06:47 CDT)
- RE: Questions regarding fftk and Gaussian Bennion, Brian (Tue May 19 2015 - 10:51:51 CDT)
- Re: Questions regarding fftk and Gaussian Evandro Semighini (Tue May 19 2015 - 12:45:53 CDT)
- Re: Questions regarding fftk and Gaussian Mayne, Christopher G (Tue May 19 2015 - 15:07:21 CDT)
- Re: Questions regarding fftk and Gaussian Evandro Semighini (Tue May 19 2015 - 15:19:40 CDT)
- Re: Questions regarding fftk and Gaussian Evandro Semighini (Thu Jun 25 2015 - 14:28:21 CDT)
- RE: Questions regarding fftk and Gaussian Bennion, Brian (Fri Jun 26 2015 - 20:32:01 CDT)
- Re: Questions regarding fftk and Gaussian Evandro Semighini (Mon Jul 06 2015 - 09:16:38 CDT)
- Re: Questions regarding fftk and Gaussian Evandro Semighini (Tue May 19 2015 - 12:45:53 CDT)
- RE: Questions regarding fftk and Gaussian Bennion, Brian (Tue May 19 2015 - 10:51:51 CDT)
- very high vdw and electrostatic energy for bulk urea molecules Subrata Paul (Tue May 19 2015 - 01:04:43 CDT)
- How to continue the calculation of NAMD in case of power failure? 丁晗 (Sun May 17 2015 - 20:28:31 CDT)
- Error in NAMD energy plugin of VMD Debashis Kundu (Fri May 15 2015 - 08:40:45 CDT)
- Running 64-bit Linux VMD in VMWare VM on Windows 8.1 64-bit Host Machine Justin (Fri May 15 2015 - 04:16:16 CDT)
- How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 12:53:27 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Maxim Belkin (Wed May 13 2015 - 13:07:04 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 13:11:06 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Josh Vermaas (Wed May 13 2015 - 13:44:50 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 16:17:24 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 16:22:06 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Josh Vermaas (Wed May 13 2015 - 16:29:28 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 18:48:21 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Josh Vermaas (Wed May 13 2015 - 19:00:28 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 20:35:42 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Maxim Belkin (Wed May 13 2015 - 20:43:46 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Josh Vermaas (Wed May 13 2015 - 20:51:23 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? JeJoon Yeon (Wed May 13 2015 - 21:30:47 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Axel Kohlmeyer (Wed May 13 2015 - 21:23:45 CDT)
- Re: How can I swap specific atoms for all frames of xyz file? Maxim Belkin (Wed May 13 2015 - 13:07:04 CDT)
- Is there currently support for loading large PDBx or PDBML files (e.g. 4YBB)? Lai, Jonathan (Wed May 13 2015 - 11:55:36 CDT)
- Limit to total number of atoms in PSF? Jeeno Jose (Wed May 13 2015 - 01:38:25 CDT)
- Re: Limit to total number of atoms in PSF? John Stone (Wed May 13 2015 - 01:49:00 CDT)
- Re: Limit to total number of atoms in PSF? Jeeno Jose (Wed May 13 2015 - 03:12:52 CDT)
- Re: Limit to total number of atoms in PSF? Jeeno Jose (Wed May 13 2015 - 09:04:07 CDT)
- Re: Limit to total number of atoms in PSF? John Stone (Wed May 13 2015 - 09:26:46 CDT)
- Re: Limit to total number of atoms in PSF? Maxim Belkin (Wed May 13 2015 - 09:52:28 CDT)
- Re: Limit to total number of atoms in PSF? Jeeno Jose (Wed May 13 2015 - 12:18:50 CDT)
- Re: Limit to total number of atoms in PSF? Jeeno Jose (Wed May 13 2015 - 03:12:52 CDT)
- Re: Limit to total number of atoms in PSF? John Stone (Wed May 13 2015 - 01:49:00 CDT)
- template script for cavity volume Francesco Pietra (Tue May 12 2015 - 13:06:29 CDT)
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- where are the files provided with MDFF TUTORIAL? sunyeping (Sun May 10 2015 - 22:12:03 CDT)
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- how to set the coordinates of carbon nanotube? 丁晗 (Fri May 08 2015 - 01:30:17 CDT)
- Re: AW: Problem with assignation of secondary structure in VMD Matic Kisovec (Thu May 07 2015 - 00:41:07 CDT)
- Re: AW: Problem with assignation of secondary structure in VMD Stefan Doerr (Thu May 07 2015 - 04:34:02 CDT)
- Re: AW: Problem with assignation of secondary structure in VMD Matic Kisovec (Thu May 07 2015 - 07:48:28 CDT)
- Problem with assignation of secondary structure in VMD Kevin C Chan (Thu May 07 2015 - 21:53:44 CDT)
- Re: Problem with assignation of secondary structure in VMD John Stone (Thu May 07 2015 - 22:37:56 CDT)
- Re: Problem with assignation of secondary structure in VMD Kevin C Chan (Thu May 07 2015 - 22:50:35 CDT)
- Re: Problem with assignation of secondary structure in VMD John Stone (Fri May 08 2015 - 00:09:44 CDT)
- Re: Problem with assignation of secondary structure in VMD Kevin C Chan (Tue Sep 08 2015 - 23:18:47 CDT)
- Re: Re: Problem with assignation of secondary structure in VMD Ryan McGreevy (Wed Sep 09 2015 - 10:37:09 CDT)
- Re: Re: Problem with assignation of secondary structure in VMD JC Gumbart (Wed Sep 09 2015 - 10:42:18 CDT)
- Re: Re: Problem with assignation of secondary structure in VMD Kevin C Chan (Thu Sep 10 2015 - 21:36:26 CDT)
- Re: AW: Problem with assignation of secondary structure in VMD Matic Kisovec (Thu May 07 2015 - 07:48:28 CDT)
- Re: AW: Problem with assignation of secondary structure in VMD Stefan Doerr (Thu May 07 2015 - 04:34:02 CDT)
- OPLS force-field in NAMD AnkiReddy katha (Thu May 07 2015 - 02:12:03 CDT)
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- Re: VMD for MacBook Pro -- NetCDF Axel Kohlmeyer (Wed May 06 2015 - 14:53:00 CDT)
- Re: VMD for MacBook Pro -- NetCDF Gabrielle Garcia (Wed May 06 2015 - 15:12:09 CDT)
- Re: VMD for MacBook Pro -- NetCDF Axel Kohlmeyer (Wed May 06 2015 - 15:17:00 CDT)
- Re: VMD for MacBook Pro -- NetCDF Gabrielle Garcia (Wed May 06 2015 - 15:28:08 CDT)
- Re: VMD for MacBook Pro -- NetCDF Axel Kohlmeyer (Wed May 06 2015 - 15:31:18 CDT)
- Re: VMD for MacBook Pro -- NetCDF John Stone (Wed May 06 2015 - 15:37:06 CDT)
- Re: VMD for MacBook Pro -- NetCDF Gabrielle Garcia (Wed May 06 2015 - 15:58:43 CDT)
- Re: VMD for MacBook Pro -- NetCDF John Stone (Wed May 06 2015 - 17:46:11 CDT)
- Re: VMD for MacBook Pro -- NetCDF Gabrielle Garcia (Wed May 06 2015 - 16:14:03 CDT)
- Re: VMD for MacBook Pro -- NetCDF Gabrielle Garcia (Wed May 06 2015 - 15:12:09 CDT)
- Re: VMD for MacBook Pro -- NetCDF Axel Kohlmeyer (Wed May 06 2015 - 14:53:00 CDT)
- Problem with assignation of secondary structure in VMD Matic Kisovec (Wed May 06 2015 - 06:29:20 CDT)
- Announcement: 鈥楬ands On鈥 Workshop on Computational Biophysics (Odense, Denmark, Oct 12-16, 2015) Lela Vukovic (Wed May 06 2015 - 01:39:55 CDT)
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- How to create an aggregation of molecules with VMD? 丁晗 (Mon May 04 2015 - 22:12:05 CDT)
- FFTk: donor water escape during optimization Michetti Davide (Mon May 04 2015 - 08:49:46 CDT)
- Error on fftk while optimizing bonded parameters Hyunjin Kim (Sun May 03 2015 - 02:55:11 CDT)
- Re: Error on fftk while optimizing bonded parameters Mayne, Christopher G (Mon May 04 2015 - 09:07:09 CDT)
- Re: Error on fftk while optimizing bonded parameters Mayne, Christopher G (Mon May 04 2015 - 11:27:06 CDT)
- Re: Error on fftk while optimizing bonded parameters Hyunjin Kim (Mon May 04 2015 - 11:37:38 CDT)
- Re: Error on fftk while optimizing bonded parameters Mayne, Christopher G (Mon May 04 2015 - 12:48:25 CDT)
- Re: Error on fftk while optimizing bonded parameters Hyunjin Kim (Mon May 04 2015 - 13:49:06 CDT)
- I can not see "Edit Entry" window. Hyunjin Kim (Tue May 05 2015 - 12:47:02 CDT)
- Re: I can not see "Edit Entry" window. Mayne, Christopher G (Wed May 06 2015 - 08:57:22 CDT)
- Re: Error on fftk while optimizing bonded parameters Mayne, Christopher G (Mon May 04 2015 - 11:27:06 CDT)
- Re: Error on fftk while optimizing bonded parameters Mayne, Christopher G (Mon May 04 2015 - 09:07:09 CDT)
- Problems in running AutoIMD Ern Seang Ong (Fri May 01 2015 - 00:49:39 CDT)
- Re: Problems in running AutoIMD John Stone (Thu May 07 2015 - 23:12:40 CDT)
- RE: Problems in running AutoIMD Ern Seang Ong (Sat May 09 2015 - 00:08:44 CDT)
- Re: Problems in running AutoIMD John Stone (Wed May 13 2015 - 15:39:17 CDT)
- RE: Problems in running AutoIMD Ern Seang Ong (Sun May 17 2015 - 20:24:46 CDT)
- RE: Problems in running AutoIMD Jim Phillips (Mon May 18 2015 - 10:32:20 CDT)
- RE: Problems in running AutoIMD Jim Phillips (Tue May 19 2015 - 15:18:08 CDT)
- RE: Problems in running AutoIMD Ern Seang Ong (Sat May 09 2015 - 00:08:44 CDT)
- Re: Problems in running AutoIMD John Stone (Thu May 07 2015 - 23:12:40 CDT)
- RDF in big trejectory Ondrej Kroutil (Thu Apr 30 2015 - 06:04:23 CDT)
- dielectric constant for ELEC energy in VMD namdenergy tool Subrata Paul (Tue Apr 28 2015 - 05:03:37 CDT)
- Setting up a truncation cutoff fro volumetric data Miguel Caro (Tue Apr 28 2015 - 04:03:52 CDT)
- using the colvar module in VMD within a tcl loop through trajectory frames Vlad Cojocaru (Mon Apr 27 2015 - 09:27:02 CDT)
- follow-up of "new VMD plugin for H5MD file format" Pierre de Buyl (Thu Apr 23 2015 - 06:56:29 CDT)
- Dumping the coordinates of single frame karthik kumar (Wed Apr 22 2015 - 05:01:04 CDT)
- fftk water interaction questions Bennion, Brian (Mon Apr 20 2015 - 14:18:45 CDT)
- Error saying "too many open files" Monika Madhavi (Mon Apr 20 2015 - 01:29:34 CDT)
- XTC to DCD conversion rajan kumar (Thu Apr 16 2015 - 13:41:24 CDT)
- measure sasa of a complex (CNT and protein) Aryan Vahedi (Thu Apr 16 2015 - 10:58:38 CDT)
- Valbond and NAMD zoran (Thu Apr 16 2015 - 07:11:37 CDT)
- CentOS 6.4 crashed right after starting vmd ASHISH BIHANI (Thu Apr 16 2015 - 00:57:51 CDT)
- Drawing a vector for each particle's velocity Hojjat Behmadi (Tue Apr 14 2015 - 13:04:42 CDT)
- velocity arrow and calculation Hojjat Behmadi (Tue Apr 14 2015 - 13:02:01 CDT)
- Assigning colors to atom names Lutz Maibaum (Mon Apr 13 2015 - 19:09:18 CDT)
- Updated VMD 1.9.2. Gromacs plugins posted for download John Stone (Mon Apr 13 2015 - 16:36:25 CDT)
- reg list of non standard residues. surya narayanan chandrasekaran (Sat Apr 11 2015 - 16:57:05 CDT)
- Read CHARMM VDW radii into VMD Gianluca Interlandi (Sat Apr 11 2015 - 02:22:42 CDT)
- MacOS X Yosemite 10.2.2 workaround for people to try... John Stone (Thu Apr 09 2015 - 21:16:22 CDT)
- Immediate Postdoctoral Position Opening Marawan Hussien (Thu Apr 09 2015 - 18:10:32 CDT)
- measure energy Gianluca Interlandi (Thu Apr 09 2015 - 17:39:49 CDT)
- measure sasa not consistent Gianluca Interlandi (Thu Apr 09 2015 - 16:17:18 CDT)
- Re: measure sasa not consistent John Stone (Thu Apr 09 2015 - 16:33:37 CDT)
- Re: measure sasa not consistent Gianluca Interlandi (Thu Apr 09 2015 - 16:52:40 CDT)
- Re: measure sasa not consistent John Stone (Thu Apr 09 2015 - 17:17:24 CDT)
- Re: measure sasa not consistent Gianluca Interlandi (Thu Apr 09 2015 - 17:34:43 CDT)
- Re: measure sasa not consistent John Stone (Thu Apr 09 2015 - 21:06:27 CDT)
- Re: measure sasa not consistent Gianluca Interlandi (Fri Apr 10 2015 - 00:10:07 CDT)
- Re: measure sasa not consistent Gianluca Interlandi (Sat Apr 11 2015 - 15:16:39 CDT)
- Re: measure sasa not consistent John Stone (Sat Apr 11 2015 - 15:20:01 CDT)
- Re: measure sasa not consistent Gianluca Interlandi (Thu Apr 09 2015 - 16:52:40 CDT)
- Re: measure sasa not consistent John Stone (Thu Apr 09 2015 - 16:33:37 CDT)
- new VMD plugin for H5MD file format Jonas Landsgesell (Thu Apr 09 2015 - 15:27:50 CDT)
- new VMD plugin for H5MD file format Jonas Landsgesell (Thu Apr 09 2015 - 15:25:52 CDT)
- XYZ to psf file Bharat Sharma (Thu Apr 09 2015 - 09:43:10 CDT)
- crash with 1.9.2 and not with 1.9.1 andrea spitaleri (Thu Apr 09 2015 - 07:14:52 CDT)
- VMD text mode on MAC OS Bharat Sharma (Wed Apr 08 2015 - 18:14:17 CDT)
- Adding groups Neelanjana Sengupta (Wed Apr 08 2015 - 09:01:41 CDT)
- new VMD plugin for H5MD file format Jonas Landsgesell (Wed Apr 08 2015 - 08:33:41 CDT)
- compiling VMD 1.9.2 source with tcl 8.6 Vlad Cojocaru (Tue Apr 07 2015 - 05:23:35 CDT)
- using namdstats.tcl oguz gurbulak (Sun Apr 05 2015 - 16:54:50 CDT)
- periodic boundary conditions displaying Ming Tang (Sun Apr 05 2015 - 03:58:31 CDT)
- Writing Lammps data file Benjamin Cowen (Sat Apr 04 2015 - 21:46:30 CDT)
- How to populate lib/ directory when compiling Michael Lamparski (Fri Apr 03 2015 - 15:48:15 CDT)
- Residues within a specified distance across all trajectories time steps Aryan Vahedi (Fri Apr 03 2015 - 11:24:56 CDT)
- Vmd Opengl display do not show anything Denis Zhu (Thu Apr 02 2015 - 09:25:13 CDT)
- Resid and residue atomselect bug Stefan Doerr (Thu Apr 02 2015 - 03:41:16 CDT)
- Re: Resid and residue atomselect bug Axel Kohlmeyer (Thu Apr 02 2015 - 06:54:55 CDT)
- Re: Resid and residue atomselect bug Stefan Doerr (Thu Apr 02 2015 - 07:08:33 CDT)
- Re: Resid and residue atomselect bug Axel Kohlmeyer (Thu Apr 02 2015 - 07:43:14 CDT)
- Re: Resid and residue atomselect bug Stefan Doerr (Thu Apr 02 2015 - 08:15:36 CDT)
- Re: Resid and residue atomselect bug Axel Kohlmeyer (Thu Apr 02 2015 - 08:20:34 CDT)
- Re: Resid and residue atomselect bug Stefan Doerr (Thu Apr 02 2015 - 08:32:02 CDT)
- Re: Resid and residue atomselect bug Axel Kohlmeyer (Thu Apr 02 2015 - 08:42:34 CDT)
- Re: Resid and residue atomselect bug Stefan Doerr (Thu Apr 02 2015 - 09:00:12 CDT)
- Re: Resid and residue atomselect bug Josh Vermaas (Thu Apr 02 2015 - 08:16:39 CDT)
- Re: Resid and residue atomselect bug Axel Kohlmeyer (Thu May 21 2015 - 08:09:00 CDT)
- Re: Resid and residue atomselect bug Stefan Doerr (Thu Apr 02 2015 - 07:08:33 CDT)
- Re: Resid and residue atomselect bug Axel Kohlmeyer (Thu Apr 02 2015 - 06:54:55 CDT)
- Questions with Solvation with TIP4P Water Model Kin Leung CHU (Thu Apr 02 2015 - 01:58:01 CDT)
- Calculating residence time M K (Wed Apr 01 2015 - 23:08:33 CDT)
- fftk bonded parameter optimization Chaya Stern (Wed Apr 01 2015 - 15:57:28 CDT)
- Optimizing an inter-residue distance measurement Charles McAnany (Wed Apr 01 2015 - 14:42:37 CDT)
- segv in vmd upon opening a file Burlen Loring (Tue Mar 31 2015 - 16:20:44 CDT)
- Re: segv in vmd upon opening a file John Stone (Tue Mar 31 2015 - 19:56:43 CDT)
- Re: segv in vmd upon opening a file Burlen Loring (Wed Apr 01 2015 - 03:23:28 CDT)
- Re: segv in vmd upon opening a file John Stone (Wed Apr 01 2015 - 09:51:15 CDT)
- Re: segv in vmd upon opening a file Axel Kohlmeyer (Wed Apr 01 2015 - 10:51:25 CDT)
- Re: segv in vmd upon opening a file John Stone (Wed Apr 01 2015 - 11:25:50 CDT)
- Re: segv in vmd upon opening a file Axel Kohlmeyer (Wed Apr 01 2015 - 11:29:34 CDT)
- Re: segv in vmd upon opening a file John Stone (Wed Apr 01 2015 - 11:51:58 CDT)
- Re: segv in vmd upon opening a file Burlen Loring (Wed Apr 01 2015 - 12:09:34 CDT)
- Re: segv in vmd upon opening a file Axel Kohlmeyer (Wed Apr 01 2015 - 13:01:07 CDT)
- Re: segv in vmd upon opening a file Burlen Loring (Wed Apr 01 2015 - 13:22:20 CDT)
- Re: segv in vmd upon opening a file John Stone (Wed Apr 01 2015 - 13:34:18 CDT)
- Re: segv in vmd upon opening a file Burlen Loring (Wed Apr 01 2015 - 13:46:17 CDT)
- Re: segv in vmd upon opening a file Burlen Loring (Wed Apr 01 2015 - 03:23:28 CDT)
- Re: segv in vmd upon opening a file John Stone (Tue Mar 31 2015 - 19:56:43 CDT)
- save coordinates Ducasse Laurent (Mon Mar 30 2015 - 09:00:31 CDT)
- about the diffusion & msd plugin M K (Mon Mar 30 2015 - 01:57:12 CDT)
- namdenergy pluding error Subrata Paul (Mon Mar 30 2015 - 00:26:54 CDT)
- The charge of glycine mutations in Mutator is not equal to zero Jian Dai (Sun Mar 29 2015 - 07:28:47 CDT)
- flip the sheet using transaxis command Mohan maruthi sena (Sat Mar 28 2015 - 22:37:04 CDT)
- Q=B0startup.command=A1=B1_can=A1=AFt_be?= opened because CoreServicesUIAgent is not allowed to open documents in Terminal. 苗家远 (Fri Mar 27 2015 - 15:33:20 CDT)
- Re: ??startup.command?? can??t be opened because CoreServicesUIAgent is not allowed to open documents in Terminal. John Stone (Mon Mar 30 2015 - 17:08:23 CDT)
- (no subject) Jevgenij Raskatov (Fri Mar 27 2015 - 11:43:31 CDT)
- VMD 1.9.3 alpha Matic Kisovec (Fri Mar 27 2015 - 07:58:47 CDT)
- MSD calculation - Memory saving. Bharat Sharma (Fri Mar 27 2015 - 07:33:56 CDT)
- Problem with generating psf and pdb files of metalloprotein made up of two fragments zoran (Thu Mar 26 2015 - 13:45:59 CDT)
- Colour coordinating atoms in a trajectory by Coordination Number Samuel Jobbins (Thu Mar 26 2015 - 10:57:51 CDT)
- Re: Colour coordinating atoms in a trajectory by Coordination Number Josh Vermaas (Thu Mar 26 2015 - 12:12:29 CDT)
- Fw: Colour coordinating atoms in a trajectory by Coordination Number Samuel Jobbins (Mon Mar 30 2015 - 10:13:00 CDT)
- Re: Fw: Colour coordinating atoms in a trajectory by Coordination Number Axel Kohlmeyer (Mon Mar 30 2015 - 10:59:18 CDT)
- Re: Fw: Colour coordinating atoms in a trajectory by Coordination Number Josh Vermaas (Mon Mar 30 2015 - 11:14:53 CDT)
- Fw: Fw: Colour coordinating atoms in a trajectory by Coordination Number Samuel Jobbins (Mon Mar 30 2015 - 11:28:54 CDT)
- Fw: Colour coordinating atoms in a trajectory by Coordination Number Samuel Jobbins (Mon Mar 30 2015 - 10:13:00 CDT)
- Re: Colour coordinating atoms in a trajectory by Coordination Number Axel Kohlmeyer (Thu Mar 26 2015 - 12:08:48 CDT)
- Re: Colour coordinating atoms in a trajectory by Coordination Number Josh Vermaas (Thu Mar 26 2015 - 12:12:29 CDT)
- Script to impose coordinates from separate file onto equivalent selection of atoms Sam Wallace (Thu Mar 26 2015 - 07:21:43 CDT)
- FFTK: Running optimizations in batch? Amira Yu (Wed Mar 25 2015 - 22:09:15 CDT)
- How to visualize the moving periodic boundaries in VMD Yihua Zhou (Wed Mar 25 2015 - 16:15:26 CDT)
- "color by mass" - change default colors Maria Sander (Wed Mar 25 2015 - 15:09:56 CDT)
- namdenergy Subrata Paul (Wed Mar 25 2015 - 13:21:07 CDT)
- Visualizing H-bonds between two segnames or chains Dolan, Michael A. (NIH/NIAID) [C] (Wed Mar 25 2015 - 10:30:07 CDT)
- Periodic Tab with PDB input Viswanath Pasumarthi (Wed Mar 25 2015 - 08:06:54 CDT)
- Running TCL scripts (textmode) on a Server Stephan Grein (Wed Mar 25 2015 - 06:00:58 CDT)
- Re: Running TCL scripts (textmode) on a Server Stephan Grein (Wed Mar 25 2015 - 06:45:04 CDT)
- Re: Running TCL scripts (textmode) on a Server karthik kumar (Wed Mar 25 2015 - 06:48:34 CDT)
- Re: Running TCL scripts (textmode) on a Server Michail Palaiokostas Avramidis (Wed Mar 25 2015 - 06:57:57 CDT)
- RE: Running TCL scripts (textmode) on a Server Joaquim Rui de Castro Rodrigues (Wed Mar 25 2015 - 07:12:38 CDT)
- RE: Running TCL scripts (textmode) on a Server Morgan, Brittany (Wed Mar 25 2015 - 07:20:38 CDT)
- Re: Running VMD in user folder on Windows (bug fix?) Pawel Kedzierski (Wed Mar 25 2015 - 04:33:10 CDT)
- Running VMD in user folder on Windows (bug fix?) Pawel Kedzierski (Wed Mar 25 2015 - 03:50:29 CDT)
- Coloring of basins Maria Ivanova (Tue Mar 24 2015 - 19:48:10 CDT)
- How to run VMD text mode on Windows 7 Bharat Sharma (Tue Mar 24 2015 - 19:33:47 CDT)
- Announcement: 鈥楬ands On鈥 Workshop on Computational Biophysics (Lake Tahoe, CA, Aug 3-7, 2015) Lela Vukovic (Tue Mar 24 2015 - 15:51:28 CDT)
- GPU Programming workshop @ ICTP: deadline extended for participants not requiring visa and financial support Axel Kohlmeyer (Tue Mar 24 2015 - 14:17:22 CDT)
- vmd-I: Using the MergeMultiFramesPDB code Akshata Rudrapatna (Sat Mar 21 2015 - 17:06:42 CDT)
- fftk bonded and dihedral optimization question Chaya Stern (Fri Mar 20 2015 - 09:13:01 CDT)
- Re: fftk bonded and dihedral optimization question Tim Lo (Fri Mar 20 2015 - 10:36:27 CDT)
- Re: fftk bonded and dihedral optimization question Chaya Stern (Fri Mar 20 2015 - 11:11:59 CDT)
- Re: fftk bonded and dihedral optimization question Mayne, Christopher G (Fri Mar 20 2015 - 11:21:42 CDT)
- Re: fftk bonded and dihedral optimization question Mayne, Christopher G (Fri Mar 20 2015 - 12:41:00 CDT)
- RE: fftk bonded and dihedral optimization question Richard Wood (Fri Mar 20 2015 - 12:50:25 CDT)
- Re: fftk bonded and dihedral optimization question Mayne, Christopher G (Fri Mar 20 2015 - 12:53:22 CDT)
- RE: fftk bonded and dihedral optimization question Richard Wood (Fri Mar 20 2015 - 13:06:15 CDT)
- Re: fftk bonded and dihedral optimization question Mayne, Christopher G (Fri Mar 20 2015 - 13:19:51 CDT)
- RE: fftk bonded and dihedral optimization question Richard Wood (Fri Mar 20 2015 - 14:29:57 CDT)
- Re: fftk bonded and dihedral optimization question Tim Lo (Fri Mar 20 2015 - 10:36:27 CDT)
- Recent martini top+par+cgc files Sourav Ray (Thu Mar 19 2015 - 06:34:03 CDT)
- Align a trajectory Kevin C Chan (Thu Mar 19 2015 - 07:35:06 CDT)
- Counting water transition through a channel nicolas martin (Thu Mar 19 2015 - 03:04:26 CDT)
- Total volume of ligand calculation in vmd mish (Tue Mar 17 2015 - 11:10:28 CDT)
- Coarse-graining a retro protein Sourav Ray (Tue Mar 17 2015 - 01:25:46 CDT)
- selected atoms James Lord (Mon Mar 16 2015 - 15:56:28 CDT)
- Atom order in VMD Arjun Sharma (Sat Mar 14 2015 - 17:50:42 CDT)
- Fwd: Segmentation fault (core dump) Nima Soltani (Fri Mar 13 2015 - 16:00:30 CDT)
- PBC Plugin Kevin C Chan (Wed Mar 11 2015 - 10:09:09 CDT)
- writing a new plugin Albert Solernou (Mon Mar 09 2015 - 10:11:26 CDT)
- Re: writing a new plugin John Stone (Mon Mar 09 2015 - 13:00:45 CDT)
- Re: writing a new plugin Albert Solernou (Tue Mar 10 2015 - 05:53:09 CDT)
- Re: writing a new plugin Axel Kohlmeyer (Tue Mar 10 2015 - 07:44:19 CDT)
- Re: writing a new plugin Albert Solernou (Tue Mar 10 2015 - 12:12:14 CDT)
- Re: writing a new plugin Axel Kohlmeyer (Tue Mar 10 2015 - 15:11:59 CDT)
- Re: writing a new plugin Albert Solernou (Wed Mar 11 2015 - 05:39:50 CDT)
- Re: writing a new plugin Axel Kohlmeyer (Wed Mar 11 2015 - 05:54:56 CDT)
- Re: writing a new plugin Pawel Kedzierski (Tue Mar 10 2015 - 07:38:34 CDT)
- Re: writing a new plugin Albert Solernou (Tue Mar 10 2015 - 05:53:09 CDT)
- Re: writing a new plugin John Stone (Mon Mar 09 2015 - 13:00:45 CDT)
- TopoTools and box information in LAMMPS data Ondrej Marsalek (Sun Mar 08 2015 - 23:28:28 CDT)
- How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Sun Mar 08 2015 - 09:33:03 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Joaquim Rui de Castro Rodrigues (Sun Mar 08 2015 - 11:41:18 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Sun Mar 08 2015 - 12:17:16 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Sun Mar 08 2015 - 12:33:29 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Joaquim Rui de Castro Rodrigues (Sun Mar 08 2015 - 13:50:57 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Mon Mar 09 2015 - 01:24:11 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Norman Geist (Mon Mar 09 2015 - 04:42:44 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Mon Mar 09 2015 - 05:26:18 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Norman Geist (Mon Mar 09 2015 - 06:08:36 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Josh Vermaas (Mon Mar 09 2015 - 08:30:25 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Thu Mar 12 2015 - 03:51:49 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Sun Jul 05 2015 - 23:55:29 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Norman Geist (Mon Jul 06 2015 - 02:28:01 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Mon Jul 06 2015 - 04:01:35 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Norman Geist (Mon Jul 06 2015 - 04:58:16 CDT)
- Re: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Mon Jul 06 2015 - 22:57:49 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Monika Madhavi (Sun Mar 08 2015 - 12:17:16 CDT)
- RE: How to write coordinates to a pdb without replacing existing entries Joaquim Rui de Castro Rodrigues (Sun Mar 08 2015 - 11:41:18 CDT)
- How to select a particular water molecule from a water box Monika Madhavi (Sat Mar 07 2015 - 01:19:45 CST)
- (no subject) Jevgenij Raskatov (Fri Mar 06 2015 - 14:26:49 CST)
- (no subject) Jevgenij Raskatov (Fri Mar 06 2015 - 14:01:48 CST)
- Re: vmd error saying "no atom selection" Monika Madhavi (Fri Mar 06 2015 - 08:04:17 CST)
- Oculus Rift Christian Wohlschlager (Fri Mar 06 2015 - 04:21:55 CST)
- vmd error saying "no atom selection" Monika Madhavi (Fri Mar 06 2015 - 02:56:46 CST)
- Residue label moves upon rendering James Lord (Wed Mar 04 2015 - 19:55:05 CST)
- Announcement: 鈥楬ands On鈥 Workshop on Computational Biophysics (Pittsburgh, PA, June 1-5, 2015) Lela Vukovic (Wed Mar 04 2015 - 13:08:28 CST)
- Using Multiseq for aligning a structure and a sequence Arijit Ghosh (Wed Mar 04 2015 - 00:56:40 CST)
- Render as Object or 3DS file Tom.Verhelst_at_ucb.com (Mon Mar 02 2015 - 06:01:09 CST)
- Aligning portions of proteins Anjela Manandhar (Sun Mar 01 2015 - 20:06:02 CST)
- movie making Maryam Kowsar (Sat Feb 28 2015 - 12:04:00 CST)
- Moving making with short trajectories anu chandra (Fri Feb 27 2015 - 14:24:59 CST)
- Re: Moving making with short trajectories John Stone (Fri Feb 27 2015 - 14:31:28 CST)
- Re: Moving making with short trajectories Maxim Belkin (Fri Feb 27 2015 - 14:42:10 CST)
- Re: Moving making with short trajectories anu chandra (Sat Feb 28 2015 - 07:49:41 CST)
- Re: Moving making with short trajectories Maxim Belkin (Sat Feb 28 2015 - 09:23:31 CST)
- Re: Moving making with short trajectories anu chandra (Sat Feb 28 2015 - 11:07:23 CST)
- Re: Moving making with short trajectories Josh Vermaas (Sat Feb 28 2015 - 13:11:03 CST)
- Re: Moving making with short trajectories Maxim Belkin (Sat Feb 28 2015 - 14:43:46 CST)
- Re: Moving making with short trajectories anu chandra (Sat Feb 28 2015 - 11:30:52 CST)
- Re: Moving making with short trajectories Maxim Belkin (Fri Feb 27 2015 - 14:42:10 CST)
- Re: Moving making with short trajectories John Stone (Fri Feb 27 2015 - 14:31:28 CST)
- Nvidia GPU driver not detected with VMD anu chandra (Fri Feb 27 2015 - 04:31:00 CST)
- RE: Nvidia GPU driver not detected with VMD Norman Geist (Fri Feb 27 2015 - 07:29:06 CST)
- Re: Nvidia GPU driver not detected with VMD John Stone (Fri Feb 27 2015 - 07:29:56 CST)
- Re: Nvidia GPU driver not detected with VMD anu chandra (Fri Feb 27 2015 - 07:58:43 CST)
- Re: Nvidia GPU driver not detected with VMD John Stone (Fri Feb 27 2015 - 08:16:00 CST)
- Re: Nvidia GPU driver not detected with VMD anu chandra (Fri Feb 27 2015 - 08:55:16 CST)
- Re: Nvidia GPU driver not detected with VMD John Stone (Fri Feb 27 2015 - 08:58:44 CST)
- Re: Nvidia GPU driver not detected with VMD anu chandra (Fri Feb 27 2015 - 14:14:59 CST)
- Re: Nvidia GPU driver not detected with VMD anu chandra (Fri Feb 27 2015 - 07:58:43 CST)
- Problem creating tetramer from a monomer Arijit Ghosh (Thu Feb 26 2015 - 23:03:23 CST)
- velocity IO with psfgen? Brian Radak (Thu Feb 26 2015 - 09:41:04 CST)
- (no subject) Jevgenij Raskatov (Wed Feb 25 2015 - 21:07:32 CST)
- Re: namd-l: Aggregation related analysis scripts J茅r么me H茅nin (Tue Feb 24 2015 - 09:39:01 CST)
- selecting all atoms within a given coordinate range Monika Madhavi (Mon Feb 23 2015 - 20:46:52 CST)
- camera navigator question Nuno Sousa Cerqueira (Mon Feb 23 2015 - 16:42:16 CST)
- Hydration Shell RDF -- VMD Nomenclature Needed Phelan Jr., Frederick R. Dr. (Mon Feb 23 2015 - 15:31:03 CST)
- (no subject) Jevgenij Raskatov (Mon Feb 23 2015 - 10:27:01 CST)
- adding additional atoms to psf and dcd Vlad Cojocaru (Sat Feb 21 2015 - 03:59:33 CST)
- topotools addbond and retypeimpropers commands Hugo Santos Silva (Thu Feb 19 2015 - 19:22:44 CST)
- OpenGL Display transparent jing liang (Thu Feb 19 2015 - 18:11:46 CST)
- (no subject) Jevgenij Raskatov (Thu Feb 19 2015 - 16:31:31 CST)
- script for displaying multiple frames jing liang (Thu Feb 19 2015 - 07:26:17 CST)
- (no subject) Jevgenij Raskatov (Wed Feb 18 2015 - 16:11:18 CST)
- FFTK scan torsions question Elena Lilkova (Tue Feb 17 2015 - 07:46:06 CST)
- Bonding energies between two atom selections Viswanath Pasumarthi (Tue Feb 17 2015 - 05:12:56 CST)
- MDFF plugin calculating ccc Kevin C Chan (Mon Feb 16 2015 - 21:19:19 CST)
- Re: MDFF plugin calculating ccc Ryan McGreevy (Tue Feb 17 2015 - 10:19:48 CST)
- MDFF plugin calculating ccc Kevin C Chan (Tue Feb 17 2015 - 11:04:40 CST)
- Re: MDFF plugin calculating ccc John Stone (Tue Feb 17 2015 - 11:08:40 CST)
- Re: MDFF plugin calculating ccc Ryan McGreevy (Tue Feb 17 2015 - 11:24:58 CST)
- Re: MDFF plugin calculating ccc Tristan Croll (Tue Feb 17 2015 - 16:13:02 CST)
- Re: MDFF plugin calculating ccc Kevin C Chan (Mon Feb 23 2015 - 03:59:03 CST)
- Re: MDFF plugin calculating ccc Ryan McGreevy (Mon Feb 23 2015 - 10:50:26 CST)
- MDFF plugin calculating ccc Kevin C Chan (Tue Feb 17 2015 - 11:04:40 CST)
- Re: MDFF plugin calculating ccc Ryan McGreevy (Tue Feb 17 2015 - 10:19:48 CST)
- On the behavior of "graphics material" Norman Geist (Mon Feb 16 2015 - 05:44:43 CST)
- Why NAMD??? a general question M K (Sun Feb 15 2015 - 05:49:19 CST)
- Extracting coordinates from DCD file to a single PDB file Sourav Ray (Fri Feb 13 2015 - 04:09:36 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Maxim Belkin (Fri Feb 13 2015 - 05:33:27 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Sun Feb 15 2015 - 23:21:59 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Maxim Belkin (Sun Feb 15 2015 - 23:51:48 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Mon Feb 16 2015 - 00:31:42 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Mon Feb 16 2015 - 00:41:26 CST)
- RE: Extracting coordinates from DCD file to a single PDB file Norman Geist (Mon Feb 16 2015 - 03:29:54 CST)
- RE: Extracting coordinates from DCD file to a single PDB file Norman Geist (Mon Feb 16 2015 - 01:52:34 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Mon Feb 16 2015 - 04:36:17 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Maxim Belkin (Mon Feb 16 2015 - 04:43:59 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Mon Feb 16 2015 - 04:53:02 CST)
- RE: Extracting coordinates from DCD file to a single PDB file Norman Geist (Mon Feb 16 2015 - 06:33:50 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Tue Feb 17 2015 - 01:20:27 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Tue Feb 17 2015 - 11:22:12 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Sourav Ray (Sun Feb 15 2015 - 23:21:59 CST)
- Re: Extracting coordinates from DCD file to a single PDB file Maxim Belkin (Fri Feb 13 2015 - 05:33:27 CST)
- vmd command not found Seera Suryanarayana (Fri Feb 13 2015 - 03:56:16 CST)
- Feature request: read environment to set FreeVR lib, include paths Stock, Mark (Thu Feb 12 2015 - 17:54:02 CST)
- color gradient based on the sequence Hyun (Thu Feb 12 2015 - 13:41:01 CST)
- Change VDW scaling in CPK drawing method Damien Serres (Thu Feb 12 2015 - 11:03:52 CST)
- Mac issue Michael Patzschke (Thu Feb 12 2015 - 09:08:12 CST)
- how to select a particular molecule Monika Madhavi (Thu Feb 12 2015 - 00:56:21 CST)
- Re: how to select a particular molecule Mike Makowski (Thu Feb 12 2015 - 02:28:35 CST)
- RE: how to select a particular molecule Norman Geist (Thu Feb 12 2015 - 02:35:21 CST)
- Re: how to select a particular molecule Tristan Croll (Thu Feb 12 2015 - 03:23:33 CST)
- Fwd: NAMDEnergy fails to locate supporting files Ashar Malik (Thu Feb 12 2015 - 00:48:48 CST)
- VMD Tcl Getting first index from residue number Bharat Sharma (Wed Feb 11 2015 - 12:14:21 CST)
- Handful of rendering issues Tristan Croll (Wed Feb 11 2015 - 05:15:19 CST)
- RE: Handful of rendering issues Norman Geist (Wed Feb 11 2015 - 09:32:35 CST)
- Re: Handful of rendering issues John Stone (Wed Feb 11 2015 - 10:21:09 CST)
- RE: Handful of rendering issues Norman Geist (Thu Feb 12 2015 - 02:44:34 CST)
- Re: Handful of rendering issues John Stone (Thu Feb 12 2015 - 09:15:59 CST)
- RE: Handful of rendering issues Norman Geist (Fri Feb 13 2015 - 01:42:15 CST)
- Re: Handful of rendering issues John Stone (Fri Feb 13 2015 - 08:54:37 CST)
- RE: Handful of rendering issues Norman Geist (Fri Feb 13 2015 - 09:25:36 CST)
- Re: Handful of rendering issues John Stone (Fri Feb 13 2015 - 09:42:02 CST)
- RE: Handful of rendering issues Norman Geist (Mon Feb 16 2015 - 02:23:37 CST)
- Re: Handful of rendering issues John Stone (Fri Apr 10 2015 - 01:51:22 CDT)
- Re: Handful of rendering issues John Stone (Wed Feb 11 2015 - 10:21:09 CST)
- Re: Handful of rendering issues Maxim Belkin (Wed Feb 11 2015 - 09:52:15 CST)
- Re: Handful of rendering issues John Stone (Wed Feb 11 2015 - 10:12:44 CST)
- RE: Handful of rendering issues Norman Geist (Wed Feb 11 2015 - 09:32:35 CST)
- GBIS in NAMD 2.10 CUDA with IMD Tristan Croll (Wed Feb 11 2015 - 04:18:11 CST)
- FFTK charge optimization of one charge group Elena Lilkova (Tue Feb 10 2015 - 08:08:18 CST)
- To delete some atoms via VMD Majid Shahbabaei (Tue Feb 10 2015 - 03:26:48 CST)
- topo guessatom Ben Hanson (Mon Feb 09 2015 - 12:03:14 CST)
- VMD secondary structure Stride bug Stefan Doerr (Mon Feb 09 2015 - 10:53:10 CST)
- Cross-correlation coefficient calculated MDFF package Kevin C Chan (Mon Feb 09 2015 - 06:47:21 CST)
- NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Mon Feb 09 2015 - 06:32:15 CST)
- Re: NAMDEnergy fails to locate supporting files Fotis Baltoumas (Mon Feb 09 2015 - 06:53:41 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Mon Feb 09 2015 - 07:59:09 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Tue Feb 10 2015 - 22:35:48 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Wed Feb 11 2015 - 00:55:18 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Wed Feb 11 2015 - 03:14:15 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Thu Feb 12 2015 - 00:12:36 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Thu Feb 12 2015 - 02:58:11 CST)
- Re: NAMDEnergy fails to locate supporting files Ashar Malik (Thu Feb 12 2015 - 03:00:29 CST)
- Re: NAMDEnergy fails to locate supporting files Ashar Malik (Thu Feb 12 2015 - 03:02:21 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Thu Feb 12 2015 - 03:15:21 CST)
- Re: NAMDEnergy fails to locate supporting files Ashar Malik (Thu Feb 12 2015 - 03:49:52 CST)
- Re: NAMDEnergy fails to locate supporting files Ashar Malik (Thu Feb 12 2015 - 03:53:34 CST)
- Re: NAMDEnergy fails to locate supporting files Viswanath Pasumarthi (Fri Feb 13 2015 - 03:17:41 CST)
- Re: NAMDEnergy fails to locate supporting files Fotis Baltoumas (Mon Feb 09 2015 - 06:53:41 CST)
- Select Residues Ardavan Mehdizadeh (Mon Feb 09 2015 - 00:46:16 CST)
- remove vmd package in centos Marzieh Dehghan (Sun Feb 08 2015 - 08:07:59 CST)
- Beta testers wanted for modified AutoPSF Tristan Croll (Sun Feb 08 2015 - 01:57:33 CST)
- (no subject) Jevgenij Raskatov (Sat Feb 07 2015 - 19:45:14 CST)
- Re: namd-l: Analysis plugins for Martini Coarse Grained protein simulations Fotis Baltoumas (Sat Feb 07 2015 - 05:25:50 CST)
- ACS COMP Division awards for Fall 2015 National Meeting in Boston Carlos Simmerling (Thu Feb 05 2015 - 10:55:09 CST)
- Problem by removing vmd 1.9.1 and installing 1.9.2. Majid Shahbabaei (Thu Feb 05 2015 - 05:32:16 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Khuong Truong Gia (Thu Feb 05 2015 - 05:56:15 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Majid Shahbabaei (Thu Feb 05 2015 - 19:55:18 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Josh Vermaas (Thu Feb 05 2015 - 21:13:34 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Majid Shahbabaei (Fri Feb 06 2015 - 01:19:13 CST)
- RE: Problem by removing vmd 1.9.1 and installing 1.9.2. Norman Geist (Fri Feb 06 2015 - 02:41:41 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Axel Kohlmeyer (Fri Feb 06 2015 - 06:47:56 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Majid Shahbabaei (Fri Feb 06 2015 - 05:28:48 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Majid Shahbabaei (Fri Feb 06 2015 - 21:31:06 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Majid Shahbabaei (Thu Feb 05 2015 - 19:55:18 CST)
- RE: Problem by removing vmd 1.9.1 and installing 1.9.2. Norman Geist (Thu Feb 05 2015 - 06:46:40 CST)
- Re: Problem by removing vmd 1.9.1 and installing 1.9.2. Khuong Truong Gia (Thu Feb 05 2015 - 05:56:15 CST)
- Putting different peptide chains (spaced apart) in a single .xbgf file Sourav Ray (Wed Feb 04 2015 - 05:25:19 CST)
- LAST CALL: Free Energy Workshop, M眉nster, March 9-11, 2015 Vlad Cojocaru (Tue Feb 03 2015 - 14:35:02 CST)
- Recognizing Chlorine atoms in VMD Debasish Mandal (Tue Feb 03 2015 - 13:56:20 CST)
- Selecting structure closest to average Jonathan Booth (Tue Feb 03 2015 - 10:46:38 CST)
- namd2.exe has stopped working - NAMDEnergy Viswanath Pasumarthi (Tue Feb 03 2015 - 01:28:13 CST)
- (no subject) Jevgenij Raskatov (Mon Feb 02 2015 - 20:15:45 CST)
- vmd-I: Fatal Error: Unable to Open CHARMM Parameter File Akshata Rudrapatna (Mon Feb 02 2015 - 19:44:56 CST)
- Unit Cell PDB of Copper JAVAD NOROOZI (Mon Feb 02 2015 - 17:04:35 CST)
- movie maker extension Eric Smoll (Mon Feb 02 2015 - 15:55:23 CST)
- questions about "new" posssible features Daniel M鰈ler (Mon Feb 02 2015 - 05:29:17 CST)
- BUG: vmd-1.9.2 final Representations GUI Norman Geist (Mon Feb 02 2015 - 03:52:52 CST)
- RE: BUG: vmd-1.9.2 final Representations GUI Norman Geist (Mon Feb 02 2015 - 05:30:42 CST)
- Re: BUG: vmd-1.9.2 final Representations GUI Maxim Belkin (Mon Feb 02 2015 - 05:39:53 CST)
- Re: BUG: vmd-1.9.2 final Representations GUI John Stone (Mon Feb 09 2015 - 15:37:55 CST)
- RE: BUG: vmd-1.9.2 final Representations GUI Norman Geist (Tue Feb 10 2015 - 05:01:19 CST)
- Re: BUG: vmd-1.9.2 final Representations GUI John Stone (Tue Feb 10 2015 - 10:10:03 CST)
- RE: BUG: vmd-1.9.2 final Representations GUI Norman Geist (Tue Feb 10 2015 - 10:30:48 CST)
- RE: BUG: vmd-1.9.2 final Representations GUI Norman Geist (Wed Feb 11 2015 - 01:38:08 CST)
- Re: BUG: vmd-1.9.2 final Representations GUI Maxim Belkin (Mon Feb 02 2015 - 05:39:53 CST)
- RE: BUG: vmd-1.9.2 final Representations GUI Norman Geist (Mon Feb 02 2015 - 05:30:42 CST)
- plot secondary structure of protein along trajectory. Vy Phan (Mon Feb 02 2015 - 01:20:50 CST)
- rms alignment in VMD Gianluca Interlandi (Fri Jan 30 2015 - 14:27:10 CST)
- quick tcl question with vmd/psfgen Brian Radak (Thu Jan 29 2015 - 12:30:47 CST)
- Fwd: To delete some angles via VMD Majid Shahbabaei (Wed Jan 28 2015 - 23:09:54 CST)
- VMD Segmentation fault (core dumped) Matic Kisovec (Wed Jan 28 2015 - 09:53:11 CST)
- Re-centering protein molecule Sourav Ray (Wed Jan 28 2015 - 05:14:56 CST)
- making self-adjustable high resolution images M K (Wed Jan 28 2015 - 04:47:26 CST)
- AW: making self-adjustable high resolution images Norman Geist (Wed Jan 28 2015 - 06:24:51 CST)
- Re: making self-adjustable high resolution images Axel Kohlmeyer (Wed Jan 28 2015 - 07:13:19 CST)
- catdcd 5.1 not working from VMD terminal Michail Palaiokostas Avramidis (Tue Jan 27 2015 - 09:20:46 CST)
- Hbond calculation - periodic atoms Bharat Sharma (Mon Jan 26 2015 - 18:59:58 CST)
- Exposed area of a particular residue from dehydrated trajectory Charles McAnany (Sun Jan 25 2015 - 23:31:38 CST)
- Hbond per residue Antonija Tomi膰 (Sun Jan 25 2015 - 03:56:19 CST)
- Does topo readlammpsdata automatically detect bonds? Dhritiman Talukdar (Sat Jan 24 2015 - 09:23:00 CST)
- Output of topo getbondlist to text file from VMD Dhritiman Talukdar (Fri Jan 23 2015 - 14:38:50 CST)
- within command Bennion, Brian (Fri Jan 23 2015 - 14:31:44 CST)
- within command Thomas C. Bishop (Fri Jan 23 2015 - 13:04:10 CST)
- VMD killed despite using $sel delete and unset sel MannyEful E (Thu Jan 22 2015 - 23:18:10 CST)
- Re: VMD killed despite using $sel delete and unset sel John Stone (Fri Jan 23 2015 - 00:20:52 CST)
- Re: VMD killed despite using $sel delete and unset sel John Stone (Fri Jan 23 2015 - 11:39:51 CST)
- optixRender error andrea spitaleri (Fri Jan 23 2015 - 12:37:43 CST)
- Re: optixRender error Axel Kohlmeyer (Fri Jan 23 2015 - 13:00:11 CST)
- Re: optixRender error John Stone (Fri Jan 23 2015 - 13:14:15 CST)
- Re: optixRender error andrea spitaleri (Sun Jan 25 2015 - 15:45:57 CST)
- Re: optixRender error John Stone (Tue Jan 27 2015 - 09:55:26 CST)
- Re: optixRender error Josh Vermaas (Fri Jan 23 2015 - 13:26:05 CST)
- Re: VMD killed despite using $sel delete and unset sel John Stone (Fri Jan 23 2015 - 23:25:25 CST)
- Re: VMD killed despite using $sel delete and unset sel John Stone (Fri Jan 23 2015 - 11:39:51 CST)
- Re: VMD killed despite using $sel delete and unset sel John Stone (Fri Jan 23 2015 - 00:20:52 CST)
- Problem with FFTK in VMD 1.9.2 Dawid das (Thu Jan 22 2015 - 07:41:31 CST)
- TachyonL-OptiX not shown in renderer list Alexandre Suman de Araujo (Thu Jan 22 2015 - 04:56:22 CST)
- tcl script for averaging a parameter along length Nima Nouri (Thu Jan 22 2015 - 03:40:31 CST)
- ion visualization in VMD JhonY. I. (Wed Jan 21 2015 - 21:47:30 CST)
- nvidia optimus problem for 1.9.2 Albert (Wed Jan 21 2015 - 12:05:14 CST)
- Error in disulfide bond identification in AutoPSF Tristan Croll (Tue Jan 20 2015 - 23:15:12 CST)
- vmd-1: Colors in Representations Tab Akshata Rudrapatna (Tue Jan 20 2015 - 16:09:28 CST)
- vmd-1: Creating movies in VMD Akshata Rudrapatna (Tue Jan 20 2015 - 14:57:14 CST)
- The quality of movie made by VMD sunyeping (Sun Jan 18 2015 - 21:45:31 CST)
- AW: The quality of movie made by VMD Norman Geist (Mon Jan 19 2015 - 02:41:23 CST)
- coloring scheme in "VolumeSlice" Walter Huang (Sat Jan 17 2015 - 21:08:02 CST)
- Re: Is a PDB file hiding something ??? Ashar Malik (Sat Jan 17 2015 - 05:01:53 CST)
- Is a PDB file hiding something ??? Ashar Malik (Sat Jan 17 2015 - 00:27:13 CST)
- Can I load NetCDF trajectories from AMBER in VMD on a Windows machine? Emilio Lence (Fri Jan 16 2015 - 06:12:54 CST)
- VMD not working with Yosemite nupur bansal (Thu Jan 15 2015 - 20:38:54 CST)
- namdenergy plugin, selection field Bahaa Mostafa (Wed Jan 14 2015 - 23:56:13 CST)
- using topotools: error in identifying atoms and dihedrals Nathan K Houtz (Wed Jan 14 2015 - 16:18:42 CST)
- Running CUDA on a laptop Tristan Croll (Tue Jan 13 2015 - 18:29:59 CST)
- Why does dipole moment depends so strongly on constraints? Dawid das (Tue Jan 13 2015 - 08:57:53 CST)
- Build a customized alpha helix using Molefacture by command Jian Dai (Tue Jan 13 2015 - 08:23:01 CST)
- Re: Feature Request: Stride on vmd commandline startup Axel Kohlmeyer (Tue Jan 13 2015 - 08:18:01 CST)
- Feature Request: Stride on vmd commandline startup Norman Geist (Tue Jan 13 2015 - 07:44:31 CST)
- atomselection by wildcard and distance exclusion Bennion, Brian (Mon Jan 12 2015 - 18:57:52 CST)
- FW: atomselection by wildcard and distance exclusion Bennion, Brian (Mon Jan 12 2015 - 23:12:58 CST)
- Re: FW: atomselection by wildcard and distance exclusion John Stone (Mon Jan 12 2015 - 23:25:20 CST)
- Re: Re: FW: atomselection by wildcard and distance exclusion John Stone (Mon Jan 12 2015 - 23:42:15 CST)
- RE: Re: FW: atomselection by wildcard and distance exclusion Bennion, Brian (Tue Jan 13 2015 - 12:23:11 CST)
- AW: Re: FW: atomselection by wildcard and distance exclusion Norman Geist (Tue Jan 13 2015 - 01:27:02 CST)
- RE: Re: FW: atomselection by wildcard and distance exclusion Bennion, Brian (Tue Jan 13 2015 - 10:04:52 CST)
- Re: Re: FW: atomselection by wildcard and distance exclusion John Stone (Tue Jan 13 2015 - 10:18:15 CST)
- RE: Re: FW: atomselection by wildcard and distance exclusion Richard Wood (Tue Jan 13 2015 - 11:05:22 CST)
- Re: Re: FW: atomselection by wildcard and distance exclusion Axel Kohlmeyer (Tue Jan 13 2015 - 10:54:08 CST)
- Re: FW: atomselection by wildcard and distance exclusion John Stone (Mon Jan 12 2015 - 23:25:20 CST)
- FW: atomselection by wildcard and distance exclusion Bennion, Brian (Mon Jan 12 2015 - 23:12:58 CST)
- Re: Problem with the display panel John Stone (Mon Jan 12 2015 - 10:25:56 CST)
- Re: Fwd: VMD 1.9.2 released! John Stone (Mon Jan 12 2015 - 10:37:35 CST)
- Reading chemical bonds by VMD from AMBER parm7 files Francesco Pietra (Sat Jan 10 2015 - 12:12:07 CST)
- Re: Reading chemical bonds by VMD from AMBER parm7 files John Stone (Wed Jan 14 2015 - 10:44:32 CST)
- Re: Reading chemical bonds by VMD from AMBER parm7 files Francesco Pietra (Wed Jan 21 2015 - 11:52:10 CST)
- Re: Reading chemical bonds by VMD from AMBER parm7 files John Stone (Wed Jan 21 2015 - 12:28:06 CST)
- Fwd: Reading chemical bonds by VMD from AMBER parm7 files Francesco Pietra (Sat Jan 31 2015 - 15:42:05 CST)
- Re: Fwd: Reading chemical bonds by VMD from AMBER parm7 files John Stone (Mon Feb 02 2015 - 11:30:53 CST)
- Re: Fwd: Reading chemical bonds by VMD from AMBER parm7 files Francesco Pietra (Mon Feb 02 2015 - 14:16:08 CST)
- Re: Reading chemical bonds by VMD from AMBER parm7 files Francesco Pietra (Wed Jan 21 2015 - 11:52:10 CST)
- Re: Reading chemical bonds by VMD from AMBER parm7 files John Stone (Wed Jan 14 2015 - 10:44:32 CST)
- Fwd: namd-l: Free Energy Workshop, M眉nster, March 9-11, 2015 Ana Celia Vila Verde (Fri Jan 09 2015 - 06:34:01 CST)
- Fwd: namd-l: Free Energy Workshop, M眉nster, March 9-11, 2015 Ana Celia Vila Verde (Fri Jan 09 2015 - 03:35:00 CST)
- Free Energy Workshop, M眉nster, March 9-11, 2015 Vlad Cojocaru (Fri Jan 09 2015 - 03:20:14 CST)
- write bonding/connectivity to file Eric Smoll (Thu Jan 08 2015 - 15:49:09 CST)
- RE: VMD TkConsole command Sanjib Chowdhury (Thu Jan 08 2015 - 10:27:51 CST)
- AW: VMD TkConsole command Norman Geist (Thu Jan 08 2015 - 09:17:15 CST)
- VMD TkConsole command Sanjib Chowdhury (Wed Jan 07 2015 - 18:53:29 CST)
- Troubles with VMD 1.9.2 recognizing TclTk 8.6 St. John, Alexander V. (MU-Student) (Wed Jan 07 2015 - 16:34:53 CST)
- Announcement: Hands-On Workshop On Computational Biophysics Danielle Chandler (Wed Jan 07 2015 - 12:30:34 CST)
- Problem with Kinetic Energy of Atomselection JAVAD NOROOZI (Wed Jan 07 2015 - 00:48:34 CST)
- Change bond per atom limit of VMD Dhritiman Talukdar (Tue Jan 06 2015 - 09:36:52 CST)
- Re: Change bond per atom limit of VMD John Stone (Tue Jan 06 2015 - 10:23:47 CST)
- Re: Change bond per atom limit of VMD Axel Kohlmeyer (Tue Jan 06 2015 - 10:24:19 CST)
- Re: Change bond per atom limit of VMD Dhritiman Talukdar (Tue Jan 06 2015 - 12:15:21 CST)
- Re: Change bond per atom limit of VMD Josh Vermaas (Tue Jan 06 2015 - 13:32:09 CST)
- Re: Change bond per atom limit of VMD Axel Kohlmeyer (Tue Jan 06 2015 - 14:23:56 CST)
- Re: Change bond per atom limit of VMD Dhritiman Talukdar (Tue Jan 06 2015 - 22:41:41 CST)
- Re: Change bond per atom limit of VMD Axel Kohlmeyer (Tue Jan 06 2015 - 23:24:11 CST)
- Re: Change bond per atom limit of VMD Dhritiman Talukdar (Wed Jan 07 2015 - 01:21:31 CST)
- Re: Change bond per atom limit of VMD Axel Kohlmeyer (Wed Jan 07 2015 - 02:44:03 CST)
- Re: Change bond per atom limit of VMD Dhritiman Talukdar (Wed Jan 07 2015 - 03:28:37 CST)
- AW: Change bond per atom limit of VMD Norman Geist (Wed Jan 07 2015 - 05:41:11 CST)
- Re: Change bond per atom limit of VMD John Stone (Mon Jan 12 2015 - 10:40:06 CST)
- Re: Change bond per atom limit of VMD Dhritiman Talukdar (Mon Jan 12 2015 - 13:40:49 CST)
- Re: Change bond per atom limit of VMD Dhritiman Talukdar (Tue Jan 06 2015 - 12:15:21 CST)
- Large angle force constants with FFTK Elena Lilkova (Tue Jan 06 2015 - 07:32:57 CST)
- add/remove bonds between different types of atoms DanLiu (Mon Jan 05 2015 - 05:20:07 CST)
- Display Problem with VMD in Mac OS Q=96zer_Duman?= (Sat Jan 03 2015 - 10:32:29 CST)
- show water around a residue for all the frames of the MD trajectory Sunyeping (Sat Jan 03 2015 - 09:13:16 CST)
- psf gen: missing atoms for bonds Mihaela Drenscko (Wed Dec 31 2014 - 10:17:49 CST)
- RE锛 a script to count the frames in which some water molecules interact with selected protein atoms sunyeping (Tue Dec 30 2014 - 19:13:35 CST)
- VMD 1.9.2 released! John Stone (Tue Dec 30 2014 - 13:47:29 CST)
- a script to count the frames in which some water molecules interact with selected protein atoms sunyeping (Tue Dec 30 2014 - 00:39:04 CST)
- 绛斿锛 the usage of measure bond sunyeping (Mon Dec 29 2014 - 20:01:36 CST)
- How to constrain a atom Sindrila Dutta Banik (Mon Dec 29 2014 - 10:19:13 CST)
- the usage of measure bond sunyeping (Mon Dec 29 2014 - 01:23:18 CST)
- density profile install Kazem Sepehrinia (Fri Dec 26 2014 - 10:14:19 CST)
- ribbon rendering errors Rebecca Taylor (Thu Dec 25 2014 - 23:15:15 CST)
- 1.9.2 beta2 doesn't pop up window Albert (Thu Dec 25 2014 - 05:34:25 CST)
- 绛斿锛 non-bonded interactions sunyeping (Thu Dec 25 2014 - 03:46:36 CST)
- non-bonded interactions Bahaa Mostafa (Wed Dec 24 2014 - 02:54:43 CST)
- IR Spectral Density Calculator Plugin Ramin Ekhteiari (Tue Dec 23 2014 - 02:31:01 CST)
- VMD 1.9.2 beta 2 posted for download... John Stone (Mon Dec 22 2014 - 21:03:04 CST)
- Graphic window does not refresh Alessandro Mariani (Mon Dec 22 2014 - 20:04:41 CST)
- Graphic window does not refresh Alessandro Mariani (Sun Dec 21 2014 - 13:19:41 CST)
- Problem to generate solvent box Sindrila Dutta Banik (Fri Dec 19 2014 - 06:27:01 CST)
- AW: AW: namd-l: FATAL ERROR: seek failed while writing DCD file: No such file or directory Norman Geist (Fri Dec 19 2014 - 02:45:26 CST)
- Topotools: Lammps data file for protein Hemant Gangwar (Thu Dec 18 2014 - 11:35:03 CST)
- Announcement: Hands-On Workshop On Computational Biophysics Danielle Chandler (Wed Dec 17 2014 - 10:24:49 CST)
- VMD crashing when loading prmtop files alex lin (Tue Dec 16 2014 - 17:37:58 CST)
- get the coordinate of the mouse arrow Xinqiang Ding (Tue Dec 16 2014 - 17:11:48 CST)
- Molspace volume calculation failed Albert (Tue Dec 16 2014 - 02:48:53 CST)
- FFTK work's with molecules containing new atom types zoran (Mon Dec 15 2014 - 17:57:28 CST)
- Question Eric Smoll (Mon Dec 15 2014 - 14:20:04 CST)
- need help for tcl script Kshatresh Dutta Dubey (Sun Dec 14 2014 - 10:02:14 CST)
- Network View plugin Vlad Cojocaru (Sat Dec 13 2014 - 06:40:55 CST)
- FFTK most probably doesn't work with molecules containing new atom types zoran (Sat Dec 13 2014 - 06:50:49 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Josh Vermaas (Sat Dec 13 2014 - 13:54:38 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types zoran (Sat Dec 13 2014 - 16:04:25 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types zoran (Sun Dec 14 2014 - 10:20:00 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types zoran (Mon Dec 15 2014 - 14:28:29 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types zoran (Mon Dec 15 2014 - 17:13:16 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Axel Kohlmeyer (Sat Dec 13 2014 - 15:15:52 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Francesco Pietra (Sat Dec 13 2014 - 16:44:12 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types zoran (Sat Dec 13 2014 - 17:22:16 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Axel Kohlmeyer (Sat Dec 13 2014 - 18:15:42 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types zoran (Sat Dec 13 2014 - 18:54:35 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Francesco Pietra (Sun Dec 14 2014 - 03:26:50 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Francesco Pietra (Sat Dec 13 2014 - 16:44:12 CST)
- Re: FFTK most probably doesn't work with molecules containing new atom types Josh Vermaas (Sat Dec 13 2014 - 13:54:38 CST)
- molefacture doesn't recognize lower-case letters nealec (Fri Dec 12 2014 - 20:23:24 CST)
- molefacture builds leucine with a nearly linear CA-CB-CG angle nealec (Fri Dec 12 2014 - 20:22:47 CST)
- Using the chirality and cispeptide plugins with "vmd -dispdev text" nealec (Fri Dec 12 2014 - 20:17:09 CST)
- VMD with 3D TV Smolin, Nikolai (Fri Dec 12 2014 - 10:09:43 CST)
- AW: VMD with 3D TV Norman Geist (Mon Dec 15 2014 - 01:43:12 CST)
- Re: VMD with 3D TV John Stone (Mon Dec 15 2014 - 08:25:00 CST)
- Re: VMD with 3D TV John Stone (Wed Dec 17 2014 - 10:12:18 CST)
- AW: VMD with 3D TV Norman Geist (Wed Dec 17 2014 - 10:34:14 CST)
- Re: VMD with 3D TV John Stone (Wed Dec 17 2014 - 10:45:24 CST)
- Re: VMD with 3D TV John Stone (Thu Dec 18 2014 - 14:31:56 CST)
- Re: VMD with 3D TV Smolin, Nikolai (Thu Dec 18 2014 - 15:13:43 CST)
- Re: VMD with 3D TV John Stone (Thu Dec 18 2014 - 15:38:11 CST)
- Re: VMD with 3D TV Kirby Vandivort (Thu Dec 18 2014 - 15:26:21 CST)
- Re: VMD with 3D TV Smolin, Nikolai (Wed Dec 17 2014 - 10:34:53 CST)
- Re: VMD with 3D TV John Stone (Wed Dec 17 2014 - 11:27:22 CST)
- AW: VMD with 3D TV Norman Geist (Mon Dec 15 2014 - 01:43:12 CST)
- Small bugfix for NAMD Plot Pawel Kedzierski (Fri Dec 12 2014 - 02:35:54 CST)
- VMD/IMD problems on MacOS Yosemite Dimitrov, Alex (Fri Dec 12 2014 - 00:38:53 CST)
- format I should use if I have different total number of atoms for each timesteps Jun-Chieh Wang (Thu Dec 11 2014 - 19:47:04 CST)
- tcl and vmd Eric Smoll (Thu Dec 11 2014 - 16:43:18 CST)
- adding solvation box Kshatresh Dutta Dubey (Thu Dec 11 2014 - 09:53:24 CST)
- fftk-bonded-opt problem zoran (Thu Dec 11 2014 - 03:30:25 CST)
- Fwd: How find water mediated hydrogen bond Mehdi Bagherpour (Wed Dec 10 2014 - 16:33:25 CST)
- How find water mediated hydrogen bond Mehdi Bagherpour (Wed Dec 10 2014 - 09:40:58 CST)
- Select phi, psi dihedrals with TopoTools George Patargias (Wed Dec 10 2014 - 08:12:25 CST)
- vmd and yosemite gergely.gyimesi_at_ibmm.unibe.ch (Wed Dec 10 2014 - 02:38:55 CST)
- How to save particular md frames by VMD Seera Suryanarayana (Tue Dec 09 2014 - 23:25:38 CST)
- A query about the deletion of Hydrogen and re-adding them by psfgen Kshatresh Dutta Dubey (Tue Dec 09 2014 - 09:39:10 CST)
- fftk problem - opt_bonded zoran (Mon Dec 08 2014 - 06:39:38 CST)
- H-Bonds not shown when loading by topo readlammpsdata M K (Sun Dec 07 2014 - 21:51:37 CST)
- Density of water box in solvate 1.5 plugin ~ 0.9 g/cc Jim Parker (Fri Dec 05 2014 - 07:29:22 CST)
- Problem with 'measure energy elect' command in VMD Sujata Roy (Thu Dec 04 2014 - 23:17:53 CST)
- Fwd: How can I get the path of the TOP molecule in the tcl console? Ashar Malik (Thu Dec 04 2014 - 22:15:51 CST)
- How can I get the path of the TOP molecule in the tcl console? Mohammad Khalkhali (Thu Dec 04 2014 - 19:25:50 CST)
- Re: How can I get the path of the TOP molecule in the tcl console? Cun Zhang (Thu Dec 04 2014 - 20:20:00 CST)
- Re: How can I get the path of the TOP molecule in the tcl console? Cun Zhang (Thu Dec 04 2014 - 20:58:18 CST)
- Re: How can I get the path of the TOP molecule in the tcl console? Mohammad Khalkhali (Thu Dec 04 2014 - 21:04:10 CST)
- RE: How can I get the path of the TOP molecule in the tcl console? Tristan Croll (Thu Dec 04 2014 - 22:46:08 CST)
- Re: How can I get the path of the TOP molecule in the tcl console? Mayne, Christopher G (Fri Dec 05 2014 - 09:05:46 CST)
- Re: How can I get the path of the TOP molecule in the tcl console? Cun Zhang (Thu Dec 04 2014 - 20:58:18 CST)
- Re: How can I get the path of the TOP molecule in the tcl console? Cun Zhang (Thu Dec 04 2014 - 20:20:00 CST)
- Topotools not changing psf Morgan, Brittany (Thu Dec 04 2014 - 12:00:21 CST)
- getting extra number of input file at the charge optimization phase/ ffTK Zeinab Emami (Wed Dec 03 2014 - 07:04:38 CST)
- XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 06:47:01 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 10:26:57 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 10:38:11 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 12:27:55 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 12:34:56 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 12:47:20 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 12:50:06 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Axel Kohlmeyer (Wed Dec 03 2014 - 13:21:23 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 13:21:49 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 14:00:49 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 14:04:03 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 14:23:30 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 14:31:21 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 14:34:31 CST)
- Re: XOpenIM failed (failed to find CUDA devices) Vlad Cojocaru (Wed Dec 03 2014 - 14:36:38 CST)
- Re: XOpenIM failed (failed to find CUDA devices) John Stone (Wed Dec 03 2014 - 10:26:57 CST)
- Regarding RMSD Seera Suryanarayana (Wed Dec 03 2014 - 00:53:03 CST)
- How to find rmsd of energy minimized structure of protein Seera Suryanarayana (Tue Dec 02 2014 - 23:24:46 CST)
- query about the force field toolkit Kshatresh Dutta Dubey (Tue Dec 02 2014 - 02:56:45 CST)
- paratool/forcefield tool error Kshatresh Dutta Dubey (Mon Dec 01 2014 - 08:16:07 CST)
- AW: Antw: AW: Oculus Rift DK2 Norman Geist (Mon Dec 01 2014 - 03:15:36 CST)
- program errors Albert (Sun Nov 30 2014 - 02:32:36 CST)
- Building structure Brittany Boykin (Sat Nov 29 2014 - 14:38:49 CST)
- Building zeolite cage Abu Naser (Fri Nov 28 2014 - 07:08:00 CST)
- How to make solid surfaces work with non-orthorhombic cells Miguel Caro (Fri Nov 28 2014 - 04:02:43 CST)
- AW: How to make solid surfaces work with non-orthorhombic cells Norman Geist (Fri Nov 28 2014 - 05:49:09 CST)
- Re: How to make solid surfaces work with non-orthorhombic cells Axel Kohlmeyer (Fri Nov 28 2014 - 07:04:17 CST)
- Re: How to make solid surfaces work with non-orthorhombic cells Miguel Caro (Fri Nov 28 2014 - 10:00:59 CST)
- Re: How to make solid surfaces work with non-orthorhombic cells John Stone (Fri Nov 28 2014 - 17:28:26 CST)
- RE: How to make solid surfaces work with non-orthorhombic cells Caro Miguel (Mon Dec 01 2014 - 10:57:05 CST)
- RE: How to make solid surfaces work with non-orthorhombic cells Tristan Croll (Sun Nov 30 2014 - 20:30:50 CST)
- Re: How to make solid surfaces work with non-orthorhombic cells Miguel Caro (Fri Nov 28 2014 - 10:00:59 CST)
- Oculus Rift DK2 Christian Wohlschlager (Fri Nov 28 2014 - 03:47:14 CST)
- Announcement: User defined movie animation Norman Geist (Fri Nov 28 2014 - 01:04:06 CST)
- "measure bond" vs veclength Gianluca Interlandi (Wed Nov 26 2014 - 18:06:03 CST)
- Any interest in VMD supporting mirror reflections w/ ray tracing? John Stone (Wed Nov 26 2014 - 13:49:51 CST)
- AW: Any interest in VMD supporting mirror reflections w/ ray tracing? Norman Geist (Thu Nov 27 2014 - 10:31:26 CST)
- Fwd: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Wed Nov 26 2014 - 11:09:20 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Axel Kohlmeyer (Wed Nov 26 2014 - 11:25:44 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Wed Nov 26 2014 - 12:15:03 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Axel Kohlmeyer (Wed Nov 26 2014 - 12:33:15 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Wed Nov 26 2014 - 15:32:49 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Axel Kohlmeyer (Wed Nov 26 2014 - 15:50:09 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Ashar Malik (Wed Nov 26 2014 - 17:02:34 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Thu Nov 27 2014 - 06:29:08 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Axel Kohlmeyer (Thu Nov 27 2014 - 08:19:22 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Thu Nov 27 2014 - 18:17:54 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Ashar Malik (Thu Nov 27 2014 - 08:48:56 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Maxim Belkin (Wed Nov 26 2014 - 18:00:19 CST)
- RE: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Tristan Croll (Wed Nov 26 2014 - 16:43:36 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Wed Nov 26 2014 - 12:15:03 CST)
- Re: Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Axel Kohlmeyer (Wed Nov 26 2014 - 11:25:44 CST)
- Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Wed Nov 26 2014 - 09:36:57 CST)
- Problem with merging structures!( psfgen) Warning: failed to set coordinate for atom AU0 AU:1 A) Rangeen Othman (Wed Nov 26 2014 - 09:20:10 CST)
- A box of amino acids Kevin C Chan (Mon Nov 24 2014 - 10:08:52 CST)
- Tachyon Optix BUG vmd-1.9.2beta1 Norman Geist (Mon Nov 24 2014 - 05:12:59 CST)
- question about CUDA-enabled maryam atabay (Mon Nov 24 2014 - 03:08:43 CST)
- Problem with incomplete ring in HIS Seera Suryanarayana (Mon Nov 24 2014 - 00:01:39 CST)
- velocity or force of water molecules sunyeping (Sun Nov 23 2014 - 19:29:50 CST)
- truncated atom types after merge Mihaela Drenscko (Sun Nov 23 2014 - 17:06:34 CST)
- Misleading failure of VMD with charge/CGenFF from waterbox Francesco Pietra (Sun Nov 23 2014 - 03:21:38 CST)
- problems with in text mode towards pdf and pdb files Francesco Pietra (Fri Nov 21 2014 - 09:09:52 CST)
- Re: namd-l: problems with in text mode towards pdf and pdb files Jim Phillips (Fri Nov 21 2014 - 09:29:35 CST)
- Re: namd-l: problems with in text mode towards pdf and pdb files Francesco Pietra (Fri Nov 21 2014 - 09:39:56 CST)
- Re: namd-l: problems with in text mode towards pdf and pdb files Jim Phillips (Fri Nov 21 2014 - 09:56:11 CST)
- Re: namd-l: problems with in text mode towards pdf and pdb files Francesco Pietra (Fri Nov 21 2014 - 10:06:28 CST)
- Fwd: Re: namd-l: problems with in text mode towards pdf and pdb files Francesco Pietra (Fri Nov 21 2014 - 10:42:05 CST)
- Re: Fwd: Re: namd-l: problems with in text mode towards pdf and pdb files Jim Phillips (Fri Nov 21 2014 - 10:54:20 CST)
- Re: Fwd: Re: namd-l: problems with in text mode towards pdf and pdb files Jim Phillips (Fri Nov 21 2014 - 12:50:22 CST)
- Re: namd-l: problems with in text mode towards pdf and pdb files Francesco Pietra (Fri Nov 21 2014 - 09:39:56 CST)
- Re: namd-l: problems with in text mode towards pdf and pdb files Jim Phillips (Fri Nov 21 2014 - 09:29:35 CST)
- create psf file without hydrogens Revthi Sanker (Thu Nov 20 2014 - 12:26:13 CST)
- Using "orient" - Vectors reversing direction? Meander Myself (Thu Nov 20 2014 - 09:26:27 CST)
- Fixing the rotation of complex during trajectory visualization Kshatresh Dutta Dubey (Wed Nov 19 2014 - 06:09:27 CST)
- (no subject) MannyEful E (Tue Nov 18 2014 - 07:40:29 CST)
- psfgen: no element symbol in pdb when occupancy zero Francesco Pietra (Fri Nov 14 2014 - 04:00:01 CST)
- plotchart problem Albert (Thu Nov 13 2014 - 03:11:24 CST)
- "Dynamic" gofr Ondrej Kroutil (Wed Nov 12 2014 - 17:52:22 CST)
- How to calculate MSD on VMD Bharat Sharma (Wed Nov 12 2014 - 12:38:19 CST)
- cartoon of alpha carbon trace Knapp Bernhard (Wed Nov 12 2014 - 08:00:27 CST)
- FFTK-Opt.Bonded-empty string error_VMD1.9.2Beta SEZEN VATANSEVER (Wed Nov 12 2014 - 04:40:59 CST)
- Re: FFTK-Opt.Bonded-empty string error_VMD1.9.2Beta Ashar Malik (Wed Nov 12 2014 - 06:51:52 CST)
- Query about the NAMD user forum Kshatresh Dutta Dubey (Wed Nov 12 2014 - 03:27:12 CST)
- Displaying Colors Kraemer, Tobias (Mon Nov 10 2014 - 07:04:58 CST)
- unable to create OpenGL window. Seera Suryanarayana (Mon Nov 10 2014 - 00:41:14 CST)
- can't use arrow key in vmd -disp text mode Xinqiang Ding (Sat Nov 08 2014 - 16:46:28 CST)
- can we visualize sos file? Albert (Sat Nov 08 2014 - 10:18:08 CST)
- ffTK: COLP (Charge Optimization Log Plotter) Zeinab Emami (Sat Nov 08 2014 - 10:07:14 CST)
- Charge Optimization error: error deleting "base-wat.pdb": permission denied Zeinab Emami (Sat Nov 08 2014 - 07:40:24 CST)
- Re: Charge Optimization error: error deleting "base-wat.pdb": permission denied Mayne, Christopher G (Sat Nov 08 2014 - 10:11:49 CST)
- Problem in fink install netpbm for Movie Making M K (Fri Nov 07 2014 - 22:55:07 CST)
- ffTK problem: OPT.Charges Zeinab Emami (Fri Nov 07 2014 - 09:14:15 CST)
- Problems with reading Amber NetCDF restart files Giuseppe La Rosa (Fri Nov 07 2014 - 07:51:26 CST)
- topology file for polystyrene Mihaela Drenscko (Thu Nov 06 2014 - 19:10:52 CST)
- FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OE Mihaela Drenscko (Thu Nov 06 2014 - 12:47:34 CST)
- Rotate exchanges y and z axes? Miguel Caro (Wed Nov 05 2014 - 04:53:08 CST)
- how to have residues list and properties in vmd James Lord (Wed Nov 05 2014 - 03:20:58 CST)
- Antw: Stereo Mode User Defined Christian Wohlschlager (Wed Nov 05 2014 - 02:08:34 CST)
- Stereo Mode User Defined Christian Wohlschlager (Wed Nov 05 2014 - 02:06:10 CST)
- Fwd: namd-l: Why RDF increases as r increase instead of constant Nifeng Guo hui (Sun Nov 02 2014 - 16:01:29 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Tim Lo (Sun Nov 02 2014 - 19:19:57 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Nifeng Guo hui (Sun Nov 02 2014 - 22:19:43 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Axel Kohlmeyer (Mon Nov 03 2014 - 00:58:07 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Nifeng Guo hui (Mon Nov 03 2014 - 15:29:25 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Axel Kohlmeyer (Mon Nov 03 2014 - 15:49:48 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Nifeng Guo hui (Tue Nov 04 2014 - 10:58:23 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Axel Kohlmeyer (Tue Nov 04 2014 - 11:39:49 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Nifeng Guo hui (Tue Nov 04 2014 - 13:07:26 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Axel Kohlmeyer (Tue Nov 04 2014 - 14:29:41 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Tim Lo (Tue Nov 04 2014 - 20:48:32 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Nifeng Guo hui (Sun Nov 02 2014 - 22:19:43 CST)
- Re: Fwd: namd-l: Why RDF increases as r increase instead of constant Tim Lo (Sun Nov 02 2014 - 19:19:57 CST)
- psfgen N-terminal patches Chaya Stern (Fri Oct 31 2014 - 14:08:07 CDT)
- can VMD render movies in stereo quad-buffered mode? Jose Borreguero (Fri Oct 31 2014 - 13:11:58 CDT)
- Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. John Stone (Fri Oct 31 2014 - 11:31:36 CDT)
- Problem with VMD 1.9.1 and OS X 10.10 (OpenGL display freezing on reading PDB coordinates) Nick Fisher (Fri Oct 31 2014 - 10:51:09 CDT)
- Graphics card suitable for VMD Afroditi Maria Zaki (Fri Oct 31 2014 - 09:46:10 CDT)
- Oculus Rift Christian Wohlschlager (Fri Oct 31 2014 - 06:51:43 CDT)
- Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. John Stone (Thu Oct 30 2014 - 11:33:12 CDT)
- Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. John Stone (Thu Nov 13 2014 - 00:21:33 CST)
- AW: Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. Norman Geist (Wed Nov 26 2014 - 02:32:21 CST)
- Re: Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. John Stone (Wed Nov 26 2014 - 13:42:21 CST)
- AW: Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. Norman Geist (Thu Nov 27 2014 - 03:19:00 CST)
- Re: Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. Maxim Belkin (Thu Nov 27 2014 - 12:27:54 CST)
- AW: Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. Norman Geist (Wed Nov 26 2014 - 02:32:21 CST)
- Re: Need testers: VMD 1.9.2 w/ interactive GPU ray tracing w/ AO, depth of field, etc. John Stone (Thu Nov 13 2014 - 00:21:33 CST)
- Dynamic atomselect Ondrej Kroutil (Thu Oct 30 2014 - 08:49:09 CDT)
- essential dynamics visualization in VMD Vlad Cojocaru (Thu Oct 30 2014 - 04:38:51 CDT)
- install the third part plugins sunyeping (Wed Oct 29 2014 - 12:26:59 CDT)
- BUG(s): vmd-1.9.2b Norman Geist (Wed Oct 29 2014 - 04:10:16 CDT)
- removing water inside the nanotube Asis Jana (Tue Oct 28 2014 - 11:19:42 CDT)
- ParseFEP in text mode Gianluca Interlandi (Mon Oct 27 2014 - 21:19:54 CDT)
- VMD with Cuda 6.5, Mac OS X 10.10 McNutt, Nick (Mon Oct 27 2014 - 17:14:25 CDT)
- AW: AW: AW: VMD warnings Norman Geist (Mon Oct 27 2014 - 03:05:14 CDT)
- AW: AW: VMD warnings Norman Geist (Fri Oct 24 2014 - 13:01:27 CDT)
- (no subject) Rangeen Othman (Fri Oct 24 2014 - 06:39:03 CDT)
- vmd-l incoming mails become Spam Ashar Malik (Fri Oct 24 2014 - 06:20:43 CDT)
- VMD warnings amirhossein taghavi (Fri Oct 24 2014 - 01:58:41 CDT)
- converting a .cif file into a vmd readable format, how? Jonathan Gough (Thu Oct 23 2014 - 11:58:07 CDT)
- Extensions menu empty Woodson, Michael (Thu Oct 23 2014 - 10:27:54 CDT)
- Re: Extensions menu empty Josh Vermaas (Thu Oct 23 2014 - 12:13:23 CDT)
- RE: Extensions menu empty Woodson, Michael (Thu Oct 23 2014 - 13:15:05 CDT)
- Re: Extensions menu empty Josh Vermaas (Thu Oct 23 2014 - 14:14:12 CDT)
- Re: Extensions menu empty John Stone (Thu Oct 23 2014 - 15:43:35 CDT)
- RE: Extensions menu empty Woodson, Michael (Thu Oct 23 2014 - 15:51:13 CDT)
- Re: Extensions menu empty John Stone (Thu Oct 23 2014 - 16:00:00 CDT)
- RE: Extensions menu empty Woodson, Michael (Thu Oct 23 2014 - 16:14:59 CDT)
- Re: Extensions menu empty John Stone (Thu Oct 23 2014 - 16:22:02 CDT)
- RE: Extensions menu empty Woodson, Michael (Thu Oct 23 2014 - 16:31:57 CDT)
- RE: Extensions menu empty Woodson, Michael (Thu Oct 23 2014 - 13:15:05 CDT)
- Re: Extensions menu empty Josh Vermaas (Thu Oct 23 2014 - 12:13:23 CDT)
- Tachyon-Optix failure when SSH X11 Norman Geist (Thu Oct 23 2014 - 10:01:31 CDT)
- Re: Tachyon-Optix failure when SSH X11 John Stone (Thu Oct 23 2014 - 10:29:43 CDT)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Thu Oct 23 2014 - 10:48:28 CDT)
- Re: Tachyon-Optix failure when SSH X11 Maxim Belkin (Thu Oct 23 2014 - 11:15:25 CDT)
- Re: Tachyon-Optix failure when SSH X11 John Stone (Thu Oct 23 2014 - 12:34:44 CDT)
- Re: Tachyon-Optix failure when SSH X11 Maxim Belkin (Thu Oct 23 2014 - 13:10:28 CDT)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Fri Oct 24 2014 - 02:10:23 CDT)
- Re: Tachyon-Optix failure when SSH X11 Maxim Belkin (Fri Oct 24 2014 - 06:41:00 CDT)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Fri Oct 24 2014 - 07:15:21 CDT)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Tue Oct 28 2014 - 08:57:59 CDT)
- Re: Tachyon-Optix failure when SSH X11 Maxim Belkin (Tue Oct 28 2014 - 09:11:08 CDT)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Tue Oct 28 2014 - 09:31:36 CDT)
- Re: Tachyon-Optix failure when SSH X11 John Stone (Tue Oct 28 2014 - 10:00:57 CDT)
- Re: Tachyon-Optix failure when SSH X11 John Stone (Tue Oct 28 2014 - 10:38:33 CDT)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Wed Oct 29 2014 - 03:01:50 CDT)
- Re: Tachyon-Optix failure when SSH X11 John Stone (Fri Nov 07 2014 - 17:42:40 CST)
- AW: Tachyon-Optix failure when SSH X11 Norman Geist (Thu Oct 23 2014 - 10:48:28 CDT)
- Re: Tachyon-Optix failure when SSH X11 Maxim Belkin (Thu Oct 23 2014 - 10:34:22 CDT)
- Re: Tachyon-Optix failure when SSH X11 John Stone (Thu Oct 23 2014 - 10:29:43 CDT)
- Syntax of the "within [distance] of" command Meander Myself (Wed Oct 22 2014 - 13:01:55 CDT)
- compile VMD with cuda 6.5.14 Vlad Cojocaru (Wed Oct 22 2014 - 09:39:04 CDT)
- Gaussian run for ffTK: Solvation needed? Zeinab Emami (Wed Oct 22 2014 - 09:00:53 CDT)
- Python text interpreter in VMD Woodson, Michael (Tue Oct 21 2014 - 10:13:18 CDT)
- namd-l: Re: ffTK problem: initial parameter file is void of atoms! Zeinab Emami (Mon Oct 20 2014 - 11:34:17 CDT)
- Re: namd-l: Re: ffTK problem: initial parameter file is void of atoms! Zeinab Emami (Mon Oct 20 2014 - 12:44:19 CDT)
- Re: namd-l: Re: ffTK problem: initial parameter file is void of atoms! Zeinab Emami (Mon Oct 20 2014 - 14:14:23 CDT)
- Selecting one half of a residue based CG lipid bilayer Meander Myself (Thu Oct 16 2014 - 21:01:58 CDT)
- Re: Issue rendering cylinders in povray John Stone (Thu Oct 16 2014 - 15:57:32 CDT)
- VRPN support for the Windows VMD 1.9.1 George Patargias (Thu Oct 16 2014 - 09:27:53 CDT)
- Re: VRPN support for the Windows VMD 1.9.1 John Stone (Thu Oct 16 2014 - 15:40:32 CDT)
- Re: VRPN support for the Windows VMD 1.9.1 George Patargias (Fri Oct 17 2014 - 02:45:52 CDT)
- Re: VRPN support for the Windows VMD 1.9.1 George Patargias (Mon Oct 20 2014 - 09:15:34 CDT)
- Re: VRPN support for the Windows VMD 1.9.1 John Stone (Mon Oct 20 2014 - 13:21:06 CDT)
- Re: VRPN support for the Windows VMD 1.9.1 George Patargias (Tue Oct 21 2014 - 01:59:12 CDT)
- Re: VRPN support for the Windows VMD 1.9.1 Tristan Croll (Tue Jan 13 2015 - 18:32:18 CST)
- Re: VRPN support for the Windows VMD 1.9.1 John Stone (Tue Jan 13 2015 - 18:39:02 CST)
- Re: VRPN support for the Windows VMD 1.9.1 John Stone (Thu Oct 16 2014 - 15:40:32 CDT)
- "graphics top line" and "render POV3" Eric Smoll (Wed Oct 15 2014 - 21:46:05 CDT)
- Re: "graphics top line" and "render POV3" John Stone (Wed Oct 15 2014 - 22:03:09 CDT)
- Re: "graphics top line" and "render POV3" Eric Smoll (Wed Oct 15 2014 - 22:25:37 CDT)
- Re: "graphics top line" and "render POV3" Eric Smoll (Thu Oct 16 2014 - 13:01:57 CDT)
- Re: "graphics top line" and "render POV3" John Stone (Thu Oct 16 2014 - 13:19:42 CDT)
- Re: "graphics top line" and "render POV3" Eric Smoll (Thu Oct 16 2014 - 13:53:04 CDT)
- Re: "graphics top line" and "render POV3" John Stone (Thu Oct 16 2014 - 14:00:05 CDT)
- Re: "graphics top line" and "render POV3" Eric Smoll (Thu Oct 16 2014 - 14:07:32 CDT)
- Re: "graphics top line" and "render POV3" John Stone (Thu Oct 16 2014 - 14:11:34 CDT)
- Re: "graphics top line" and "render POV3" Eric Smoll (Wed Oct 15 2014 - 22:25:37 CDT)
- Re: "graphics top line" and "render POV3" John Stone (Wed Oct 15 2014 - 22:03:09 CDT)
- VMD with Falcon George Patargias (Wed Oct 15 2014 - 10:07:29 CDT)
- GTP and GDP parameter files Anjela Manandhar (Wed Oct 15 2014 - 10:02:23 CDT)
- Scale the molecule spandu K (Wed Oct 15 2014 - 03:21:57 CDT)
- Transparency rendering by Tachyon Kevin C Chan (Sun Oct 12 2014 - 23:39:05 CDT)
- Displaying residue name in simulation movie James Lord (Sun Oct 12 2014 - 22:04:36 CDT)
- set tcl/tk variable from "get resname" command mason H (Fri Oct 10 2014 - 12:58:47 CDT)
- Successful VMD win64 Compile Nima Nouri (Thu Oct 09 2014 - 16:48:15 CDT)
- Error while calculating rotational angle Aiswarya (Thu Oct 09 2014 - 13:32:55 CDT)
- How to remove particular residues and then view "ramachandran plot" in VMD Devanand T (Thu Oct 09 2014 - 04:44:06 CDT)
- Visualizing two different data sets in the isosurface mode DEBOSTUTI GHOSHDASTIDAR (Thu Oct 09 2014 - 02:24:39 CDT)
- VMD plugins not available without gui Bj枚rn Forsberg (Wed Oct 08 2014 - 03:37:23 CDT)
- Announcement: Hands-On Workshop On Computational Biophysics Danielle Chandler (Tue Oct 07 2014 - 11:30:00 CDT)
- Haptic interface options Tristan Croll (Mon Oct 06 2014 - 20:00:28 CDT)
- Fwd: VMD Compile problem Nima Nouri (Mon Oct 06 2014 - 16:51:59 CDT)
- psfgen not parsing toppar_all36_lipid_detergent.str Chaya Stern (Mon Oct 06 2014 - 15:01:48 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Josh Vermaas (Mon Oct 06 2014 - 16:09:00 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Chaya Stern (Mon Oct 06 2014 - 16:25:30 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Josh Vermaas (Mon Oct 06 2014 - 16:31:42 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Chaya Stern (Mon Oct 06 2014 - 16:51:46 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Josh Vermaas (Mon Oct 06 2014 - 17:24:32 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Chaya Stern (Mon Oct 06 2014 - 16:25:30 CDT)
- Re: psfgen not parsing toppar_all36_lipid_detergent.str Josh Vermaas (Mon Oct 06 2014 - 16:09:00 CDT)
- log colorscale Eric Smoll (Sun Oct 05 2014 - 15:28:58 CDT)
- Compiling VMD for Windows 64bit Nima Nouri (Fri Oct 03 2014 - 15:08:15 CDT)
- creating an index file for POPC in water Mihaela Drenscko (Fri Oct 03 2014 - 13:57:31 CDT)
- topotools question regarding ordering of bonds, angles, etc in output. Dave Schall (Fri Oct 03 2014 - 11:08:27 CDT)
- Re: topotools question regarding ordering of bonds, angles, etc in output. Josh Vermaas (Fri Oct 03 2014 - 12:21:34 CDT)
- Re: topotools question regarding ordering of bonds, angles, etc in output. Axel Kohlmeyer (Fri Oct 03 2014 - 12:44:53 CDT)
- calculate structure of protein Rangeen Othman (Fri Oct 03 2014 - 06:45:21 CDT)
- Fwd: making psf files Zeinab Emami (Thu Oct 02 2014 - 11:45:27 CDT)
- making psf files M Karim (Wed Oct 01 2014 - 07:53:14 CDT)
- Creating multiple views from same trajectory file for movie generation Michael Doig (Wed Oct 01 2014 - 07:25:04 CDT)
- Reg: Peptide dimer Amit Jaiswal (Wed Oct 01 2014 - 03:42:30 CDT)
- NetworkView -- Averaging SEPARATE contact.dat files? mason H (Tue Sep 30 2014 - 20:22:31 CDT)
- NetworkView - Path lengths mason H (Tue Sep 30 2014 - 19:39:53 CDT)
- Tk script Pawe艂 Wolski (Tue Sep 30 2014 - 09:54:26 CDT)
- Stray PME grid Vy Phan (Tue Sep 30 2014 - 09:39:12 CDT)
- Problem with ViewChangeRender Mikhail Suyetin (Tue Sep 30 2014 - 09:07:18 CDT)
- Reg: Peptide dimer Amit Jaiswal (Tue Sep 30 2014 - 06:18:14 CDT)
- Protein went out of the Box Vy Phan (Mon Sep 29 2014 - 08:09:02 CDT)
- Re: Protein went out of the Box Ana Celia Vila Verde (Mon Sep 29 2014 - 09:21:18 CDT)
- Re: Protein went out of the Box Josh Vermaas (Mon Sep 29 2014 - 09:14:02 CDT)
- Re: Protein went out of the Box M K (Tue Nov 11 2014 - 18:12:50 CST)
- Re: Protein went out of the Box Josh Vermaas (Tue Nov 11 2014 - 18:23:25 CST)
- AW: Protein went out of the Box Norman Geist (Wed Nov 12 2014 - 00:15:06 CST)
- RE: Protein went out of the Box Tristan Croll (Tue Nov 11 2014 - 19:28:15 CST)
- Re: Protein went out of the Box M K (Tue Nov 11 2014 - 22:46:57 CST)
- RE: Protein went out of the Box Tristan Croll (Tue Nov 11 2014 - 22:49:27 CST)
- Re: Protein went out of the Box Ashar Malik (Wed Nov 12 2014 - 00:41:23 CST)
- Re: Protein went out of the Box Axel Kohlmeyer (Wed Nov 12 2014 - 01:38:30 CST)
- Re: Protein went out of the Box Ashar Malik (Tue Nov 11 2014 - 19:13:00 CST)
- Re: Protein went out of the Box M K (Tue Nov 11 2014 - 18:12:50 CST)
- how to make the structures in the movie look better ALIYUN (Mon Sep 29 2014 - 05:06:14 CDT)
- color by Name Pawe艂 Wolski (Mon Sep 29 2014 - 04:10:04 CDT)
- Writepdb all frames of DCD to same file using command line Mike Makowski (Sun Sep 28 2014 - 21:41:06 CDT)
- "OpenGL Display" and "VMD Main" windows; size and location on launch Eric Smoll (Sun Sep 28 2014 - 15:06:37 CDT)
- Is there a way to view .Hin files in VMD Ganesh Kamath (Fri Sep 26 2014 - 12:38:17 CDT)
- VMD 1.9.2 b1 OptiX Tachyon Error Stober, Spencer T (Fri Sep 26 2014 - 09:40:07 CDT)
- Problem with TIP3 angles during phosphorylation Thierry Oscar Wambo (Fri Sep 26 2014 - 08:04:18 CDT)
- select a group of atoms/distance measurement amirhossein taghavi (Fri Sep 26 2014 - 07:59:17 CDT)
- create bonds with uniform pairwise cut off radius for XYZ trajectories. khannan krishna (Fri Sep 26 2014 - 00:48:04 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. Axel Kohlmeyer (Fri Sep 26 2014 - 03:59:32 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. khannan krishna (Fri Sep 26 2014 - 05:05:52 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. khannan krishna (Fri Sep 26 2014 - 06:14:22 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. Axel Kohlmeyer (Fri Sep 26 2014 - 06:47:40 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. Axel Kohlmeyer (Fri Sep 26 2014 - 06:46:27 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. khannan krishna (Fri Sep 26 2014 - 05:05:52 CDT)
- Re: create bonds with uniform pairwise cut off radius for XYZ trajectories. Axel Kohlmeyer (Fri Sep 26 2014 - 03:59:32 CDT)
- Labels for part of a trajectory Thomas Sexton (Thu Sep 25 2014 - 10:28:10 CDT)
- Atom Selection Rectangle Parker de Waal (Tue Sep 23 2014 - 20:27:08 CDT)
- Re: Atom Selection Rectangle John Stone (Tue Sep 23 2014 - 21:00:29 CDT)
- Re: Atom Selection Rectangle Parker de Waal (Tue Sep 23 2014 - 21:49:32 CDT)
- Re: Atom Selection Rectangle John Stone (Tue Sep 23 2014 - 22:02:31 CDT)
- RE: Atom Selection Rectangle Parker de Waal (Wed Sep 24 2014 - 13:49:27 CDT)
- Re: Atom Selection Rectangle John Stone (Wed Sep 24 2014 - 13:56:29 CDT)
- RE: Atom Selection Rectangle Parker de Waal (Wed Sep 24 2014 - 14:45:42 CDT)
- Re: Atom Selection Rectangle Josh Vermaas (Wed Sep 24 2014 - 15:50:37 CDT)
- Re: Atom Selection Rectangle Parker de Waal (Tue Sep 23 2014 - 21:49:32 CDT)
- Re: Atom Selection Rectangle John Stone (Tue Sep 23 2014 - 21:00:29 CDT)
- Resname CHARMM to NAMD Thierry Oscar Wambo (Mon Sep 22 2014 - 22:58:32 CDT)
- Selecting atoms based on the charges M Karim (Mon Sep 22 2014 - 21:25:44 CDT)
- CatDCD on Windows Ashar Malik (Mon Sep 22 2014 - 18:07:48 CDT)
- Re: namd-l: Problem with running namdenergy plugin from text interface Josh Vermaas (Mon Sep 22 2014 - 15:09:10 CDT)
- draw geometrical objects on specific frames Bin Liu (Mon Sep 22 2014 - 11:44:59 CDT)
- Solvate Plugin: Why "Rotate to minimize volume" along 2 instead of 3 axes? Sebastian Stolzenberg (Mon Sep 22 2014 - 09:59:35 CDT)
- Solvate Plugin: Why "Rotate to minimize volume" along 2 instead of 3 axes? Sebastian Stolzenberg (Mon Sep 22 2014 - 10:22:13 CDT)
- Re: Solvate Plugin: Why "Rotate to minimize volume" along 2 instead of 3 axes? Josh Vermaas (Mon Sep 22 2014 - 10:58:56 CDT)
- Re: Solvate Plugin: Why "Rotate to minimize volume" along 2 instead of 3 axes? John Stone (Mon Sep 22 2014 - 11:33:40 CDT)
- merging several pdbs in one file Aref Takiden (Mon Sep 22 2014 - 07:55:53 CDT)
- Re: merging several pdbs in one file Maxim Belkin (Mon Sep 22 2014 - 13:04:37 CDT)
- Re: merging several pdbs in one file Dennis N Bromley (Mon Sep 22 2014 - 12:52:59 CDT)
- using vmd to apply symmetry operators part 2 Bennion, Brian (Thu Sep 18 2014 - 17:21:43 CDT)
- measure hbonds in VMD tcl script Vasumathi Velachi (Fri Sep 19 2014 - 04:34:21 CDT)
- Carbon Nanotube Interaction with Protein Simulation NAMD VMD Aryan Vahedi-Faridi (Thu Sep 18 2014 - 14:44:34 CDT)
- gofr not full PBC length Casey Johnson (Wed Sep 17 2014 - 18:45:23 CDT)
- graphics command displays shapes of unusual sizes Lane Votapka (Wed Sep 17 2014 - 17:43:55 CDT)
- Clusters help Alessandro Mariani (Wed Sep 17 2014 - 03:57:10 CDT)
- Constraining two sets of atoms Natnael Doilicho (Mon Sep 15 2014 - 18:21:45 CDT)
- Modify bond label. Dawid das (Mon Sep 15 2014 - 10:01:01 CDT)
- question about hbonds in vmd tutorial Version 1.9.2beta1 maryam atabay (Mon Sep 15 2014 - 01:45:26 CDT)
- question about hbonds in vmd tutorial Version 1.9.2beta1 maryam atabay (Mon Sep 15 2014 - 01:37:59 CDT)
- question about hbonds in vmd tutorial Version 1.9.2beta1 maryam atabay (Mon Sep 15 2014 - 00:46:31 CDT)
- VMD 1.9.2 beta 1 posted for download... John Stone (Sat Sep 13 2014 - 00:03:12 CDT)
- ACS COMP Division travel awards for Spring 2015 National Meeting in Denver Carlos Simmerling (Fri Sep 12 2014 - 09:42:32 CDT)
- problems with tachyon David Muramatsu (Fri Sep 12 2014 - 04:46:39 CDT)
- Re: FFTK: Opt Bonded error Mayne, Christopher G (Thu Sep 11 2014 - 11:17:17 CDT)
- Half of a dimer out of the box in a simulation Luis Agullo (Wed Sep 10 2014 - 14:49:13 CDT)
- velocities in trr Eric Smoll (Wed Sep 10 2014 - 14:28:56 CDT)
- vmd in windows 8 (64bite) Boshra Moradi (Tue Sep 09 2014 - 12:47:23 CDT)
- NAMD energy on dihedrals Joyce Yang (Tue Sep 09 2014 - 10:38:00 CDT)
- Unable to read corrupted binary DCD trajectory file Viswanath Pasumarthi (Mon Sep 08 2014 - 09:03:50 CDT)
- Re: Unable to read corrupted binary DCD trajectory file John Stone (Mon Sep 08 2014 - 10:00:13 CDT)
- Re: Unable to read corrupted binary DCD trajectory file Josh Vermaas (Mon Sep 08 2014 - 10:15:23 CDT)
- Etiquette, please. Ivan Gregoretti (Mon Sep 08 2014 - 07:58:34 CDT)
- Overlaying multiple files in VMD ankit agrawal (Mon Sep 08 2014 - 00:13:59 CDT)
- update selection used in "animate write" Eric Smoll (Sun Sep 07 2014 - 23:43:05 CDT)
- Selection along line in 3D Eric Smoll (Sat Sep 06 2014 - 01:40:10 CDT)
- RE: Fwd: fixed atoms_creating psf with out change in pdb Tristan Croll (Sat Sep 06 2014 - 00:10:59 CDT)
- actual simulation time for a frame Dominik Bottl鋘der (Thu Sep 04 2014 - 10:12:22 CDT)
- Re: actual simulation time for a frame Axel Kohlmeyer (Thu Sep 04 2014 - 10:51:44 CDT)
- Re: actual simulation time for a frame John Stone (Thu Sep 04 2014 - 11:10:30 CDT)
- Re: actual simulation time for a frame Dominik Bottl鋘der (Sat Sep 06 2014 - 01:36:43 CDT)
- Re: actual simulation time for a frame John Stone (Mon Sep 08 2014 - 10:08:18 CDT)
- Re: actual simulation time for a frame Dominik Bottl鋘der (Mon Sep 08 2014 - 12:07:12 CDT)
- Re: actual simulation time for a frame Axel Kohlmeyer (Mon Sep 08 2014 - 12:45:34 CDT)
- Re: actual simulation time for a frame Dominik Bottl盲nder (Tue Sep 09 2014 - 12:18:57 CDT)
- Re: actual simulation time for a frame Axel Kohlmeyer (Thu Sep 11 2014 - 08:38:34 CDT)
- Re: actual simulation time for a frame Axel Kohlmeyer (Thu Sep 04 2014 - 10:51:44 CDT)
- Fwd: fixed atoms_creating psf with out change in pdb Boshra Moradi (Wed Sep 03 2014 - 21:13:08 CDT)
- Possible malfunctioning of VMD with Yosemite? Davide Mercadante (Wed Sep 03 2014 - 14:37:39 CDT)
- Re: BUG REPORT: Malfunctioning of VMD with Yosemite? Davide Mercadante (Thu Sep 04 2014 - 07:08:57 CDT)
- Making trajectory movie last longer. Dawid das (Wed Sep 03 2014 - 08:33:37 CDT)
- Dynamical Network Analysis (Network View) -- Please help mason H (Mon Sep 01 2014 - 13:27:25 CDT)
- How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Mon Sep 01 2014 - 07:36:34 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Mon Sep 01 2014 - 08:19:05 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Tue Sep 02 2014 - 07:11:05 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet karthik kumar (Tue Sep 02 2014 - 08:08:58 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Tue Sep 02 2014 - 08:37:31 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Tue Sep 02 2014 - 08:42:38 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Wed Sep 03 2014 - 01:21:35 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Dudo (Wed Sep 03 2014 - 02:00:12 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Wed Sep 03 2014 - 02:08:45 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Wed Sep 03 2014 - 03:07:04 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Wed Sep 03 2014 - 05:05:03 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Wed Sep 03 2014 - 10:14:35 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Wed Sep 03 2014 - 10:17:38 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Wed Sep 03 2014 - 10:23:12 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Wed Sep 03 2014 - 10:30:27 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Pavan Miriyala (Tue Sep 02 2014 - 07:11:05 CDT)
- Re: How to get all bond angles and bond distances for all atoms in sheet Axel Kohlmeyer (Mon Sep 01 2014 - 08:19:05 CDT)
- re锛氱瓟澶嶏細 c_top2psf.pl sunyeping (Sun Aug 31 2014 - 10:33:48 CDT)
- Network View -- how to Load Network from command line mason H (Sat Aug 30 2014 - 20:03:09 CDT)
- entropy calculation by g_anaeig sunyeping (Sat Aug 30 2014 - 10:19:03 CDT)
- c_top2psf.pl sunyeping (Sat Aug 30 2014 - 10:14:02 CDT)
- Calling VMD from Linux Cluster Gonzalez, Aaron (Fri Aug 29 2014 - 12:34:02 CDT)
- VMD and FreeVR Michael Krause (Fri Aug 29 2014 - 08:43:46 CDT)
- APBS: ELEC values Jean-Patrick Francoia (Thu Aug 28 2014 - 16:35:56 CDT)
- APBS: uncharged molecule Jean-Patrick Francoia (Thu Aug 28 2014 - 15:00:58 CDT)
- Save position of entire molecule and draw it later Ebert Maximilian (Thu Aug 28 2014 - 10:37:34 CDT)
- Re: Accessible volume around an atom Dudo (Thu Aug 28 2014 - 04:55:01 CDT)
- Dynamical Network Analysis -- Question on Nodes and Restrictions mason H (Wed Aug 27 2014 - 21:38:53 CDT)
- building amino acid modification Bennion, Brian (Wed Aug 27 2014 - 18:00:26 CDT)
- Different colouring of the same molecule. Dawid das (Wed Aug 27 2014 - 13:37:20 CDT)
- Accessible volume around an atom Ebert Maximilian (Wed Aug 27 2014 - 13:22:29 CDT)
- Announcement: Hands-On Workshop On Computational Biophysics Danielle Chandler (Wed Aug 27 2014 - 13:04:56 CDT)
- The dreaded VMD / Mac OS 10.9 problems John Grime (Wed Aug 27 2014 - 12:39:50 CDT)
- Remote visualisation inconsistency Cara Kreck (Wed Aug 27 2014 - 11:37:39 CDT)
- The dreaded VMD / Mac OS 10.9 problems John Grime (Wed Aug 27 2014 - 10:57:24 CDT)
- Dynamical Network Analysis (NetworkView): Changing contact cutoff values for edges Fotis Baltoumas (Tue Aug 26 2014 - 10:39:47 CDT)
- Minor bug report in VMD 1.9.1 Tristan Croll (Mon Aug 25 2014 - 22:23:37 CDT)
- How does saltbr calculate distance? Dawid das (Sat Aug 23 2014 - 13:55:48 CDT)
- VMD 1.9.1 installation Annika Wittenbecher (Fri Aug 22 2014 - 01:59:24 CDT)
- Tachyon transparency and depth cueing Tristan Croll (Thu Aug 21 2014 - 02:15:24 CDT)
- Need compile options for text-only version of VMD Jim Parker (Wed Aug 20 2014 - 16:09:15 CDT)
- Re: Need compile options for text-only version of VMD Jim Parker (Wed Aug 20 2014 - 16:17:16 CDT)
- Re: Re: Need compile options for text-only version of VMD John Stone (Wed Aug 20 2014 - 16:27:30 CDT)
- Re: Re: Need compile options for text-only version of VMD Jim Parker (Thu Aug 21 2014 - 15:22:06 CDT)
- Re: Re: Need compile options for text-only version of VMD John Stone (Thu Aug 21 2014 - 15:25:42 CDT)
- Re: Re: Need compile options for text-only version of VMD Jim Parker (Thu Aug 21 2014 - 16:26:37 CDT)
- Re: Re: Need compile options for text-only version of VMD John Stone (Thu Aug 21 2014 - 16:33:47 CDT)
- Re: Re: Need compile options for text-only version of VMD John Stone (Wed Aug 20 2014 - 16:27:30 CDT)
- Re: Need compile options for text-only version of VMD Jim Parker (Wed Aug 20 2014 - 16:17:16 CDT)
- vmd without OpenGL window Eric Smoll (Wed Aug 20 2014 - 13:41:57 CDT)
- How can i connect molecules? Rafa艂 G膮sior (Wed Aug 20 2014 - 10:26:19 CDT)
- can we delete in command line? Albert (Wed Aug 20 2014 - 04:29:42 CDT)
- how to bind peripheral membrane protein to the membrane sunyeping (Tue Aug 19 2014 - 23:24:14 CDT)
- Making an extensive search of PDB Diego Granados (Tue Aug 19 2014 - 18:21:25 CDT)
- vmd hangs at creating CUDA pool Bennion, Brian (Tue Aug 19 2014 - 11:11:17 CDT)
- autoionize with polyatomic ions Bennion, Brian (Mon Aug 18 2014 - 16:06:29 CDT)
- Parameter and Topology File UPDATE. Ashar Malik (Fri Aug 15 2014 - 21:23:48 CDT)
- Labeling atoms by index Andrew DeYoung (Fri Aug 15 2014 - 16:46:00 CDT)
- ammonium sulfate ions in system Bennion, Brian (Fri Aug 15 2014 - 15:51:52 CDT)
- Autoi::sod2pot problem in "Modeling Nanopores for Sequencing DNA" tutorial Basheer Subei (Fri Aug 15 2014 - 13:45:20 CDT)
- Units used by Volmap Tool Alexandre Suman de Araujo (Fri Aug 15 2014 - 12:54:58 CDT)
- Psf format Bashir (Sat Aug 16 2014 - 12:28:49 CDT)
- python 2.7 probelms Chris Knorowski (Thu Aug 14 2014 - 15:52:40 CDT)
- Extension crashes Anoop Krishnan (Thu Aug 14 2014 - 06:49:57 CDT)
- Re: Extension crashes John Stone (Tue Aug 19 2014 - 15:26:22 CDT)
- Re: Extension crashes Anoop Krishnan (Tue Aug 19 2014 - 23:51:35 CDT)
- Re: Extension crashes John Stone (Wed Aug 20 2014 - 00:04:24 CDT)
- Re: Extension crashes Anoop Krishnan (Wed Aug 20 2014 - 23:30:37 CDT)
- Re: Extension crashes John Stone (Fri Sep 19 2014 - 23:45:14 CDT)
- Re: Extension crashes Anoop Krishnan (Sat Sep 20 2014 - 00:42:51 CDT)
- Re: Extension crashes Anoop Krishnan (Sat Sep 20 2014 - 01:43:04 CDT)
- Re: Extension crashes Anoop Krishnan (Tue Aug 19 2014 - 23:51:35 CDT)
- Re: Extension crashes John Stone (Tue Aug 19 2014 - 15:26:22 CDT)
- Ssrestraints error Kevin C Chan (Thu Aug 14 2014 - 06:21:21 CDT)
- Reading PSF files with longer than 4-letter atom types Alexander Balaeff (Wed Aug 13 2014 - 10:59:22 CDT)
- Re: Reading PSF files with longer than 4-letter atom types Josh Vermaas (Wed Aug 13 2014 - 11:55:16 CDT)
- writing improper dihedral in topotools, Ali Alizadeh (Tue Aug 12 2014 - 16:31:15 CDT)
- Announcement: Hands-On Workshop On Computational Biophysics Danielle Chandler (Tue Aug 12 2014 - 09:30:56 CDT)
- Re: Tcl scripting - Coloring residues by frame along trajectory Maur铆cio Menegatti Rigo (Tue Aug 12 2014 - 08:31:12 CDT)
- Rendering snapshots DEBOSTUTI GHOSHDASTIDAR (Tue Aug 12 2014 - 08:23:50 CDT)
- averaged structure Natal Kanaan (Tue Aug 12 2014 - 06:30:30 CDT)
- Re: averaged structure Josh Vermaas (Tue Aug 12 2014 - 09:36:49 CDT)
- Re: averaged structure John Stone (Tue Aug 12 2014 - 10:05:56 CDT)
- Re: averaged structure Natal Kanaan (Tue Aug 12 2014 - 11:42:05 CDT)
- Re: averaged structure John Stone (Tue Aug 12 2014 - 11:54:34 CDT)
- Re: averaged structure Natal Kanaan (Tue Aug 12 2014 - 12:01:02 CDT)
- Re: averaged structure John Stone (Tue Aug 12 2014 - 12:05:15 CDT)
- Re: averaged structure Axel Kohlmeyer (Tue Aug 12 2014 - 12:35:25 CDT)
- Re: averaged structure Natal Kanaan (Tue Aug 12 2014 - 12:47:56 CDT)
- Re: averaged structure Axel Kohlmeyer (Tue Aug 12 2014 - 14:18:33 CDT)
- RE: averaged structure Irene Newhouse (Tue Aug 12 2014 - 12:45:19 CDT)
- Re: averaged structure Josh Vermaas (Tue Aug 12 2014 - 11:49:12 CDT)
- Re: averaged structure Ajasja Ljubeti膷 (Tue Aug 12 2014 - 12:21:28 CDT)
- Re: averaged structure Cesar Millan (Tue Aug 12 2014 - 12:15:11 CDT)
- Re: averaged structure Josh Vermaas (Tue Aug 12 2014 - 09:36:49 CDT)
- mol new [from memory] Thomas C. Bishop (Mon Aug 11 2014 - 11:59:51 CDT)
- renumbering water molecules Natal Kanaan (Mon Aug 11 2014 - 11:41:36 CDT)
- MDFF simulations Luba Simhaev (Mon Aug 11 2014 - 04:22:31 CDT)
- Re: MDFF simulations Ryan McGreevy (Mon Aug 11 2014 - 12:24:26 CDT)
- RE: MDFF simulations Tristan Croll (Mon Aug 11 2014 - 20:13:42 CDT)
- Re: MDFF simulations Ryan McGreevy (Mon Aug 11 2014 - 21:09:34 CDT)
- Re: MDFF simulations Luba Simhaev (Tue Aug 12 2014 - 01:44:02 CDT)
- Re: MDFF simulations Tristan Croll (Tue Aug 12 2014 - 02:21:59 CDT)
- Re: MDFF simulations John Stone (Tue Aug 12 2014 - 10:01:41 CDT)
- Re: MDFF simulations Ryan McGreevy (Tue Aug 12 2014 - 10:17:34 CDT)
- Re: MDFF simulations Ryan McGreevy (Tue Aug 12 2014 - 11:31:31 CDT)
- Re: MDFF simulations Luba Simhaev (Wed Aug 13 2014 - 00:41:04 CDT)
- Re: MDFF simulations Ryan McGreevy (Mon Aug 11 2014 - 21:09:34 CDT)
- visualizing janus particles in VMD Gamot, Ritchie (Sat Aug 09 2014 - 13:24:42 CDT)
- Tcl scripting - Coloring residues by frame along trajectory Maur铆cio Menegatti Rigo (Fri Aug 08 2014 - 13:12:31 CDT)
- Using more than 9 atom types for coloring method and visualizing half of a structure Fikret Aydin (Fri Aug 08 2014 - 12:58:12 CDT)
- To the developers: TCL implementation of autofit zoom Norman Geist (Fri Aug 08 2014 - 07:11:32 CDT)
- Re: To the developers: Get current zoom value (scale) J茅r么me H茅nin (Fri Aug 08 2014 - 03:49:23 CDT)
- To the developers: Get current zoom value (scale) Norman Geist (Fri Aug 08 2014 - 01:27:45 CDT)
- vmd nearclip setting different from that used in povray render Eric Smoll (Wed Aug 06 2014 - 16:52:02 CDT)
- Problem with RBCG tutorial! Rangeen Othman (Wed Aug 06 2014 - 06:30:20 CDT)
- Problem with RBCG tutorial! Rangeen Othman (Wed Aug 06 2014 - 05:21:51 CDT)
- Feature suggestion: "glow" representation Tristan Croll (Wed Aug 06 2014 - 01:49:00 CDT)
- Cardiolipin residue names changed by vmd Rose, Stuart Wallace (Tue Aug 05 2014 - 19:30:02 CDT)
- Does the VMD Linux 64-bit version perform better than the Windows 32-bit when visualizing large molecules? Can Ali Tomruk (Tue Aug 05 2014 - 16:45:31 CDT)
- Re: Does the VMD Linux 64-bit version perform better than the Windows 32-bit when visualizing large molecules? John Stone (Tue Aug 05 2014 - 21:05:56 CDT)
- AW: Does the VMD Linux 64-bit version perform better than the Windows 32-bit when visualizing large molecules? Norman Geist (Wed Aug 06 2014 - 00:35:18 CDT)
- Vmd problem in display of surface in Md movie ( Gromacs trajectory) rama david (Tue Aug 05 2014 - 10:05:58 CDT)
- automatic extraction of RMSD values of the heavy atoms of residues from NAMD output? Andras Borosy (Tue Aug 05 2014 - 03:10:51 CDT)
- Running ABF to seperate DNA strands Charles Whidborne (Mon Aug 04 2014 - 19:40:28 CDT)
- Running ABF to separate DNA strands Charles Whidborne (Mon Aug 04 2014 - 19:36:33 CDT)
- Is VMD available to control the movie made by movie maker Xiaohui She (Mon Aug 04 2014 - 16:44:44 CDT)
- CG definition of POPS Steven Neumann (Sun Aug 03 2014 - 23:31:23 CDT)
- Re锛 display water sunyeping (Sun Aug 03 2014 - 20:41:20 CDT)
- display water sunyeping (Sun Aug 03 2014 - 02:06:44 CDT)
- ParseFEP Error Foster, Clay A. (Thu Jul 31 2014 - 17:44:45 CDT)
- color scale definitions with more than three colors? Brian Radak (Thu Jul 31 2014 - 12:38:49 CDT)
- VMD error Kshatresh Dutta Dubey (Thu Jul 31 2014 - 05:56:41 CDT)
- drop off in IO speed for bigdcd analysis Mayne, Christopher G (Wed Jul 30 2014 - 21:20:53 CDT)
- AutoPSF error Kukol, Andreas (Wed Jul 30 2014 - 05:12:20 CDT)
- Accelerated MD (aMD) Ramin Ekhteiari (Sat Jul 26 2014 - 06:06:25 CDT)
- membrane lipid involvement of cholesterol Ramin Ekhteiari (Sat Jul 26 2014 - 03:14:38 CDT)
- Does VMD 1.8.6 support SMP under IRIX? tyrrell t (Fri Jul 25 2014 - 22:25:46 CDT)
- loading multiple trajectories with stride command in the terminal George Gerogiokas (Fri Jul 25 2014 - 08:27:36 CDT)
- export trajectory all frames coordinates to numpy array Bachir Aoun (Thu Jul 24 2014 - 13:58:49 CDT)
- Re: export trajectory all frames coordinates to numpy array Axel Kohlmeyer (Thu Jul 24 2014 - 14:37:31 CDT)
- Re: export trajectory all frames coordinates to numpy array Ajasja Ljubeti膷 (Thu Jul 24 2014 - 14:59:45 CDT)
- Re: export trajectory all frames coordinates to numpy array Bachir Aoun (Thu Jul 24 2014 - 16:33:06 CDT)
- Re: export trajectory all frames coordinates to numpy array Axel Kohlmeyer (Thu Jul 24 2014 - 17:04:28 CDT)
- Re: export trajectory all frames coordinates to numpy array Bachir Aoun (Thu Jul 24 2014 - 17:13:27 CDT)
- Re: export trajectory all frames coordinates to numpy array Axel Kohlmeyer (Thu Jul 24 2014 - 17:49:26 CDT)
- Re: export trajectory all frames coordinates to numpy array Josh Vermaas (Thu Jul 24 2014 - 17:54:39 CDT)
- Re: export trajectory all frames coordinates to numpy array Bachir Aoun (Fri Jul 25 2014 - 10:34:43 CDT)
- Re: export trajectory all frames coordinates to numpy array Bachir Aoun (Thu Jul 24 2014 - 16:33:06 CDT)
- NVT system: constant energy, small DCD file size ZEINAB EMAMI (Thu Jul 24 2014 - 06:42:49 CDT)
- Self-Assemble Monolayer Natnael Doilicho (Wed Jul 23 2014 - 17:22:16 CDT)
- .obj Oddity Darrell Kuykendall (Wed Jul 23 2014 - 15:30:19 CDT)
- Topo Tools for triclinic system karthik kumar (Wed Jul 23 2014 - 03:16:25 CDT)
- Creating data file for triclinic system Bonakala Satyanarayana (Wed Jul 23 2014 - 01:40:58 CDT)
- MDFF for multiple subunits Anjela Manandhar (Mon Jul 21 2014 - 14:05:34 CDT)
- vmd-1.9.1 linux installation problem Weiping Liu (Sun Jul 20 2014 - 20:43:54 CDT)
- merge structure of two pdb files Marzieh Dehghan (Sun Jul 20 2014 - 15:31:26 CDT)
- VMD Quantum Chemistry Visualization Darrell Kuykendall (Sat Jul 19 2014 - 12:38:28 CDT)
- How to adjust different atom size separately Xiaohui She (Fri Jul 18 2014 - 11:02:32 CDT)
- School on Molecular Dynamics with NAMD and LAMMPS in Philadelphia, August 18-22 2014 Axel Kohlmeyer (Thu Jul 17 2014 - 14:48:17 CDT)
- hbonds Mary Varughese (Tue Jul 15 2014 - 04:51:50 CDT)
- Graphene Bashir Fotouhi (Sat Jul 12 2014 - 04:55:12 CDT)
- Subtract structure to a trajectory Marco Gerolin (Thu Jul 10 2014 - 09:06:29 CDT)
- pdb animation Nuno Sousa Cerqueira (Thu Jul 10 2014 - 07:24:47 CDT)
- origin in VMD Chetan Mahajan (Wed Jul 09 2014 - 20:48:53 CDT)
- How to contribute to VMD? Vlastimil Z铆ma (Wed Jul 09 2014 - 06:35:03 CDT)
- VMD 1.9.2a39_64 segmentation fault MacOS Mark Wistey (Tue Jul 08 2014 - 18:28:09 CDT)
- secondary structure calculation at certain frame Anjela Manandhar (Tue Jul 08 2014 - 12:32:50 CDT)
- tcl script Mihaela Drenscko (Tue Jul 08 2014 - 09:27:06 CDT)
- NAMD energy plugin - dielectric constant Ramin Ekhteiari (Mon Jul 07 2014 - 14:59:42 CDT)
- obtain a list of residue numbers kirtana S (Mon Jul 07 2014 - 12:11:40 CDT)
- residue within x of <geometric centre> Gurunath Katagi (Fri Jul 04 2014 - 09:48:48 CDT)
- Fwd: Visualizing the displacement vector karthik kumar (Fri Jul 04 2014 - 09:28:07 CDT)
- CL Christian Wohlschlager (Fri Jul 04 2014 - 06:13:43 CDT)
- Temporary Files for STRIDE Inaccessible on Windows 8 Chris Ing (Thu Jul 03 2014 - 16:08:03 CDT)
- salt bridge sunyeping (Wed Jul 02 2014 - 09:18:47 CDT)
- salt bridge sunyeping (Wed Jul 02 2014 - 08:41:15 CDT)
- Combining PDB/PSF of Protein and CNT Adam Kells (Wed Jul 02 2014 - 04:15:55 CDT)
- Re: namd-l: Re: NAMD energy calculation Ramin Ekhteiari (Tue Jul 01 2014 - 12:07:47 CDT)
- RE锛 select all residues in a molecule sunyeping (Mon Jun 30 2014 - 02:10:45 CDT)
- select all residues in a molecule sunyeping (Sat Jun 28 2014 - 21:45:16 CDT)
- Select the residue which comprises the atom with index Ebert Maximilian (Fri Jun 27 2014 - 11:08:22 CDT)
- Which function for animate speed Samuele Salis (Fri Jun 27 2014 - 04:38:36 CDT)
- tachyon renderer syntax Tristan Croll (Thu Jun 26 2014 - 23:12:33 CDT)
- what is the center of rotation for the transformation matrix obtained by "measure fit" command? James Chen (Thu Jun 26 2014 - 16:27:43 CDT)
- running a C code in VMD Rohan Mehta (Thu Jun 26 2014 - 04:38:40 CDT)
- NAMD energy calculation Ramin Ekhteiari (Wed Jun 25 2014 - 11:45:33 CDT)
- sscache with bigdcd Puspita Halder (Wed Jun 25 2014 - 08:23:56 CDT)
- tcl script causes VMD crash... Alberto Sergio Garay (Wed Jun 25 2014 - 07:55:08 CDT)
- any way to rotate and translate with mouse without changing modes? Carlos Simmerling (Tue Jun 24 2014 - 13:17:52 CDT)
- Re: any way to rotate and translate with mouse without changing modes? Ajasja Ljubeti膷 (Tue Jun 24 2014 - 15:37:39 CDT)
- Re: any way to rotate and translate with mouse without changing modes? Carlos Simmerling (Wed Jun 25 2014 - 09:30:48 CDT)
- Re: any way to rotate and translate with mouse without changing modes? Josh Vermaas (Wed Jun 25 2014 - 10:49:48 CDT)
- Re: any way to rotate and translate with mouse without changing modes? John Stone (Wed Jun 25 2014 - 11:33:15 CDT)
- Re: any way to rotate and translate with mouse without changing modes? Carlos Simmerling (Wed Jun 25 2014 - 11:42:32 CDT)
- Re: any way to rotate and translate with mouse without changing modes? John Stone (Mon Jun 30 2014 - 22:31:31 CDT)
- Re: any way to rotate and translate with mouse without changing modes? Carlos Simmerling (Wed Jun 25 2014 - 09:30:48 CDT)
- Re: any way to rotate and translate with mouse without changing modes? Ajasja Ljubeti膷 (Tue Jun 24 2014 - 15:37:39 CDT)
- Minor bug/annoyance: AutoPSF and acetylated CHARMM glycans Tristan Croll (Sat Jun 21 2014 - 19:13:31 CDT)
- Cannot start VMD in background from a script Jim (Sat Jun 21 2014 - 11:08:51 CDT)
- Boron nitride preparation khannan krishna (Sat Jun 21 2014 - 01:08:27 CDT)
- Preparation of Boron nitride using Carbon nanotube builder khannan krishna (Tue Jun 17 2014 - 22:56:24 CDT)
- Compute angle between 2 principal axis Revthi Sanker (Tue Jun 17 2014 - 00:57:58 CDT)
- regarding .vmdrc file Monoj Mon Kalita (Mon Jun 16 2014 - 20:53:54 CDT)
- .vmdrc file Monoj Mon Kalita (Mon Jun 16 2014 - 10:06:57 CDT)
- rmsdtt, itrajcomp and other plugins open sourced in github Luis Gracia (Mon Jun 16 2014 - 09:13:22 CDT)
- Visualizing Salt Bridges Mitul Saha (Sat Jun 14 2014 - 19:33:44 CDT)
- Fake Guru Hamid Arabnia and bogus WORLDCOMP and CSCI jermy23_at_hushmail.com (Sat Jun 14 2014 - 08:29:47 CDT)
- Building Boron Nitride khannan krishna (Fri Jun 13 2014 - 00:23:03 CDT)
- Viewing SASA points through draw command-problem Vasumathi Velachi (Thu Jun 12 2014 - 11:33:04 CDT)
- substrate moving out of the box Revthi Sanker (Mon Jun 09 2014 - 06:31:11 CDT)
- analyzing gromacs trajectories with VMD sunyeping (Sat Jun 07 2014 - 04:47:59 CDT)
- Trouble with visual representations while loading a dcd. Diego Granados (Thu Jun 05 2014 - 11:34:52 CDT)
- Re: namd-l: NAMD energy plugin Ramin Ekhteiari (Wed Jun 04 2014 - 13:55:23 CDT)
- NAMD energy plugin Ramin Ekhteiari (Wed Jun 04 2014 - 12:45:36 CDT)
- membrane generation question Richard Wood (Tue Jun 03 2014 - 11:35:35 CDT)
- Unwrap visualization Ivan Moncayo (Fri May 30 2014 - 16:17:32 CDT)
- Re: Hydrogen bond occupancy bharat gupta (Thu May 29 2014 - 20:55:55 CDT)
- Re: Re: Hydrogen bond occupancy John Stone (Thu May 29 2014 - 21:18:48 CDT)
- Re: Re: Hydrogen bond occupancy bharat gupta (Thu May 29 2014 - 21:23:18 CDT)
- Re: Re: Hydrogen bond occupancy Jeremiah Babcock (Fri May 30 2014 - 03:25:40 CDT)
- Re: Re: Hydrogen bond occupancy Josh Vermaas (Fri May 30 2014 - 07:11:42 CDT)
- Re: Re: Hydrogen bond occupancy Jeremiah Babcock (Fri May 30 2014 - 14:40:15 CDT)
- Re: Re: Hydrogen bond occupancy bharat gupta (Fri May 30 2014 - 18:33:20 CDT)
- Re: Re: Hydrogen bond occupancy bharat gupta (Wed Jun 04 2014 - 18:37:26 CDT)
- Re: Re: Hydrogen bond occupancy Josh Vermaas (Wed Jun 04 2014 - 22:09:45 CDT)
- Re: Re: Hydrogen bond occupancy bharat gupta (Thu May 29 2014 - 21:23:18 CDT)
- Re: Re: Hydrogen bond occupancy John Stone (Thu May 29 2014 - 21:18:48 CDT)
- Calculating RMSF for a lot of trajectories Ricard Argelaguet (Thu May 29 2014 - 11:22:18 CDT)
- psfgen-reading residues above 10 thousand Vasumathi Velachi (Thu May 29 2014 - 05:13:26 CDT)
- CUDA errors for graphics card in Linux Matthew J. Comstock (Wed May 28 2014 - 14:06:23 CDT)
- Re: Help with RDF calculation Axel Kohlmeyer (Wed May 28 2014 - 13:45:51 CDT)
- Re: Rapid and accurate parameterization of new molecules in CHARMM Mayne, Christopher G (Wed May 28 2014 - 08:17:56 CDT)
- snapshot including molecules in a distance interval Ali Alizadeh (Mon May 26 2014 - 05:55:37 CDT)
- Re: Help request regarding PBCTOOLs plugin in vmd Olaf Lenz (Mon May 26 2014 - 02:38:58 CDT)
- when will 1.9.2 be released? Albert (Sun May 25 2014 - 12:12:31 CDT)
- Distance measurement and PBC Ozgun Kirker (Student) (Fri May 23 2014 - 21:30:17 CDT)
- Re: pbc wrap -center com Olaf Lenz (Thu May 22 2014 - 05:45:00 CDT)
- pbc wrap -center com Norman Geist (Thu May 22 2014 - 04:43:39 CDT)
- Periodic boundaries and long bonds Olaf Lenz (Thu May 22 2014 - 01:17:51 CDT)
- Ask VMD scripts Vy Phan (Tue May 20 2014 - 22:52:08 CDT)
- How to delete unwanted atoms from PSF Sadegh Faramarzi Ganjabad (Tue May 20 2014 - 22:40:59 CDT)
- Select atoms within certain distance of vertical symmetry axis Bryan Roessler (Tue May 20 2014 - 16:25:26 CDT)
- RE锛 RE锛 proper enviroment for the VMD namdenergy plugin sunyeping (Mon May 19 2014 - 16:40:05 CDT)
- RE锛 RE锛 proper enviroment for the VMD namdenergy plugin sunyeping (Mon May 19 2014 - 16:39:49 CDT)
- RE锛 proper enviroment for the VMD namdenergy plugin sunyeping (Sun May 18 2014 - 12:00:10 CDT)
- proper enviroment for the VMD namdenergy plugin sunyeping (Sun May 18 2014 - 00:30:00 CDT)
- Workshop on Very Large System Simulation, Urbana, IL, August 11-15, 2014 David Brandon (Sat May 17 2014 - 18:26:44 CDT)
- 3-d printing of vmd scenes Bennion, Brian (Fri May 16 2014 - 12:49:05 CDT)
- Re: 3-d printing of vmd scenes John Stone (Fri May 16 2014 - 14:11:06 CDT)
- Re: 3-d printing of vmd scenes Hurt, Darrell (NIH/NIAID) [E] (Mon May 19 2014 - 09:49:56 CDT)
- RE: 3-d printing of vmd scenes Bennion, Brian (Wed May 28 2014 - 11:53:36 CDT)
- Re: 3-d printing of vmd scenes John Stone (Wed May 28 2014 - 14:31:10 CDT)
- Re: 3-d printing of vmd scenes Hurt, Darrell (NIH/NIAID) [E] (Wed May 28 2014 - 15:11:38 CDT)
- Re: 3-d printing of vmd scenes Hurt, Darrell (NIH/NIAID) [E] (Wed May 28 2014 - 15:04:24 CDT)
- Re: 3-d printing of vmd scenes Hurt, Darrell (NIH/NIAID) [E] (Mon May 19 2014 - 09:49:56 CDT)
- Re: 3-d printing of vmd scenes John Stone (Fri May 16 2014 - 14:11:06 CDT)
- Unable to use VMD1.9.1 binary (no CUDA) on Mac OSX 10.9.3 Leah Isseroff Bendavid (Thu May 15 2014 - 20:58:40 CDT)
- Re: Unable to use VMD1.9.1 binary (no CUDA) on Mac OSX 10.9.3 Joshua Skootsky (Thu May 15 2014 - 21:51:17 CDT)
- Re: Unable to use VMD1.9.1 binary (no CUDA) on Mac OSX 10.9.3 John Stone (Fri May 16 2014 - 10:04:00 CDT)
- Using bigdcd Ozgun Kirker (Student) (Thu May 15 2014 - 18:40:57 CDT)
- default representations for multiple molecules Bokas George (Thu May 15 2014 - 16:48:54 CDT)
- file output issue Karl Lundquist (Thu May 15 2014 - 14:13:58 CDT)
- mutating a residue Research Jubilant (Wed May 14 2014 - 22:28:39 CDT)
- (no subject) Mahesh Chandrasekhar Gandikota (Wed May 14 2014 - 09:59:40 CDT)
- NAMD-GPU Ramin Ekhteiari (Wed May 14 2014 - 07:19:10 CDT)
- multiplying maps in non-orthogonal coordinates Tristan Croll (Tue May 13 2014 - 20:42:57 CDT)
- (no subject) Ed Robertson (Tue May 13 2014 - 04:48:54 CDT)
- Space between protein and simulaton cell boundaries ramin_ekh_at_REMOVE_yahoo.com (Sun May 11 2014 - 09:30:33 CDT)
- Problem with amorphous silicon dioxide: Inorganic builder Pavan Miriyala (Sun May 11 2014 - 08:53:30 CDT)
- Trajectory from multiple .gro files John Brown (Sat May 10 2014 - 06:49:42 CDT)
- select two segment in structure sunyeping (Thu May 08 2014 - 11:36:28 CDT)
- Re: [apbs-users] Missing library on mac Fateme Sadat Emami (Wed May 07 2014 - 14:45:22 CDT)
- Trouble Recognizing Peptide Sequence Shyam Saladi (Wed May 07 2014 - 00:45:46 CDT)
- APBS plugin - lib error Fateme Sadat Emami (Tue May 06 2014 - 20:59:58 CDT)
- choosing an optimal workstation video card for VMD Erik Nordgren (Tue May 06 2014 - 11:08:40 CDT)
- Re: choosing an optimal workstation video card for VMD Axel Kohlmeyer (Tue May 06 2014 - 12:58:13 CDT)
- Re: choosing an optimal workstation video card for VMD Josh Vermaas (Tue May 06 2014 - 12:48:05 CDT)
- Re: choosing an optimal workstation video card for VMD John Stone (Tue May 06 2014 - 16:01:20 CDT)
- Add bond across boundaries Passerone, Daniele (Tue May 06 2014 - 08:25:54 CDT)
- Empirical force fields: release new version of RED Server Dev/PyRED FyD (Mon May 05 2014 - 06:07:18 CDT)
- number of water molecules within 5 angstroms of the ligand Ramin Ekhteiari (Mon May 05 2014 - 03:47:17 CDT)
- AW: number of water molecules within 5 angstroms of the ligand Norman Geist (Mon May 05 2014 - 05:16:47 CDT)
- AW: number of water molecules within 5 angstroms of the ligand Norman Geist (Mon May 05 2014 - 05:09:05 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Axel Kohlmeyer (Mon May 05 2014 - 05:30:00 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Ramin Ekhteiari (Mon May 05 2014 - 13:03:34 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Ramin Ekhteiari (Mon May 05 2014 - 13:05:21 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Maxim Belkin (Mon May 05 2014 - 13:41:34 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Josh Vermaas (Mon May 05 2014 - 14:06:43 CDT)
- AW: number of water molecules within 5 angstroms of the ligand Norman Geist (Tue May 06 2014 - 01:44:43 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Ana Celia Vila Verde (Tue May 06 2014 - 01:35:14 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Joshua Skootsky (Tue May 06 2014 - 13:38:46 CDT)
- AW: number of water molecules within 5 angstroms of the ligand Norman Geist (Wed May 07 2014 - 01:56:50 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Joshua Skootsky (Wed May 07 2014 - 07:22:04 CDT)
- Re: number of water molecules within 5 angstroms of the ligand Ramin Ekhteiari (Mon May 05 2014 - 13:03:34 CDT)
- Patch to connect monomers code Rawan Al Nsour (Sun May 04 2014 - 12:15:12 CDT)
- Water visualization de Waal, Parker (Wed Apr 30 2014 - 20:46:31 CDT)
- Re: [lammps-users] Regarding rdf from VMD extensions+lammps Axel Kohlmeyer (Tue Apr 29 2014 - 13:37:43 CDT)
- Visualize a SMILES string Jean-Patrick Francoia (Tue Apr 29 2014 - 07:49:11 CDT)
- Re: Visualize a SMILES string Axel Kohlmeyer (Tue Apr 29 2014 - 08:54:50 CDT)
- Re: Visualize a SMILES string Jean-Patrick Francoia (Tue Apr 29 2014 - 09:01:39 CDT)
- Re: Visualize a SMILES string Axel Kohlmeyer (Tue Apr 29 2014 - 09:32:36 CDT)
- Re: Visualize a SMILES string Axel Kohlmeyer (Tue Apr 29 2014 - 10:50:28 CDT)
- Re: Visualize a SMILES string Lorenzo Gontrani (Tue Apr 29 2014 - 11:15:35 CDT)
- Re: Visualize a SMILES string Davide Provasi (Tue Apr 29 2014 - 11:56:16 CDT)
- Re: Visualize a SMILES string Jean-Patrick Francoia (Tue Apr 29 2014 - 15:51:45 CDT)
- Re: Visualize a SMILES string Jean-Patrick Francoia (Wed Apr 30 2014 - 01:37:00 CDT)
- AW: Visualize a SMILES string Norman Geist (Tue Apr 29 2014 - 10:01:56 CDT)
- Re: Visualize a SMILES string Axel Kohlmeyer (Tue Apr 29 2014 - 08:54:50 CDT)
- writing out a new dcd file Ramin Ekhteiari (Tue Apr 29 2014 - 06:07:48 CDT)
- surface charge calculations Fateme Sadat Emami (Fri Apr 25 2014 - 13:28:40 CDT)
- AW: measure Hbond and orient (with vec {0 0 1}) of a selected molecule Norman Geist (Fri Apr 25 2014 - 06:36:35 CDT)
- AW: measure Hbond and orient (with vec {0 0 1}) of a selected molecule Norman Geist (Fri Apr 25 2014 - 05:39:11 CDT)
- AW: measure Hbond and orient (with vec {0 0 1}) of a selected molecule Norman Geist (Fri Apr 25 2014 - 02:49:20 CDT)
- measure Hbond and orient (with vec {0 0 1}) of a selected molecule HongTham (Thu Apr 24 2014 - 19:51:51 CDT)
- ligand-protein bonds representation Jerem韆s Corradi (Tue Apr 22 2014 - 08:36:14 CDT)
- selection manager Nuno Sousa Cerqueira (Tue Apr 22 2014 - 05:44:00 CDT)
- alchemical transformations Chiara Cardelli (Sun Apr 20 2014 - 13:19:41 CDT)
- printf in tcl script Martin, Erik W (Fri Apr 18 2014 - 17:05:09 CDT)
- Workshop on GPU Programming for Molecular Modeling, in Urbana, Illinois, July 22-24, 2014 David Brandon (Fri Apr 18 2014 - 16:42:16 CDT)
- automate pdb processing Martin, Erik W (Thu Apr 17 2014 - 16:32:13 CDT)
- code precision problem Jeremiah Babcock (Wed Apr 16 2014 - 15:06:15 CDT)
- convert AMBER format file to CHARMM format file or NAMD format file Norge Cruz Hern谩ndez (Wed Apr 16 2014 - 13:24:26 CDT)
- Re: convert AMBER format file to CHARMM format file or NAMD format file Josh Vermaas (Wed Apr 16 2014 - 14:29:44 CDT)
- Re: convert AMBER format file to CHARMM format file or NAMD format file Axel Kohlmeyer (Wed Apr 16 2014 - 14:55:58 CDT)
- How do i merge files with mergemols Ashish .Chauniyal (Wed Apr 16 2014 - 10:07:00 CDT)
- Re: How do i merge files with mergemols Josh Vermaas (Wed Apr 16 2014 - 11:04:15 CDT)
- Re: How do i merge files with mergemols Ashish .Chauniyal (Fri Apr 25 2014 - 06:14:22 CDT)
- Re: How do i merge files with mergemols Josh Vermaas (Fri Apr 25 2014 - 10:29:15 CDT)
- Re: How do i merge files with mergemols Ashish .Chauniyal (Sat Apr 26 2014 - 09:01:14 CDT)
- Re: How do i merge files with mergemols Ashish .Chauniyal (Sat Apr 26 2014 - 09:07:27 CDT)
- Re: How do i merge files with mergemols Axel Kohlmeyer (Sat Apr 26 2014 - 10:02:00 CDT)
- Re: How do i merge files with mergemols Ashish .Chauniyal (Sat Apr 26 2014 - 10:10:45 CDT)
- Re: How do i merge files with mergemols Axel Kohlmeyer (Sat Apr 26 2014 - 15:15:35 CDT)
- Re: How do i merge files with mergemols Ashish .Chauniyal (Thu May 01 2014 - 05:39:14 CDT)
- Re: How do i merge files with mergemols Axel Kohlmeyer (Thu May 01 2014 - 06:29:36 CDT)
- Re: How do i merge files with mergemols Axel Kohlmeyer (Thu May 01 2014 - 06:32:35 CDT)
- Re: How do i merge files with mergemols Ashish .Chauniyal (Fri Apr 25 2014 - 06:14:22 CDT)
- Re: How do i merge files with mergemols Josh Vermaas (Wed Apr 16 2014 - 11:04:15 CDT)
- How to output formed dynamic bonds in VMD Mingchao Wang (Wed Apr 16 2014 - 00:01:20 CDT)
- get resname from resid sunyeping (Tue Apr 15 2014 - 04:18:38 CDT)
- Matal binding protein prediction 3d Recep ad齳aman (Tue Apr 15 2014 - 03:49:01 CDT)
- Altering extrabonds force constant during MD Bryan Roessler (Mon Apr 14 2014 - 16:11:28 CDT)
- No native HOOMD xml support for Windows? Joshua Dempster (Mon Apr 14 2014 - 11:10:51 CDT)
- Changing the Font size of the XYZ Logo Mehdi Eftekhari (Fri Apr 11 2014 - 10:48:37 CDT)
- how to control the superposition (measure fit) ? Vlad Cojocaru (Fri Apr 11 2014 - 07:16:17 CDT)
- Re: namd-l: MMPBSA Energy Calculations using VMD (Post-Processing) Fotis Baltoumas (Thu Apr 10 2014 - 10:09:00 CDT)
- manually generate PSF for small molecules Adam Goler (Wed Apr 09 2014 - 20:04:56 CDT)
- hiding or disabling some of the atom types Mehdi Eftekhari (Wed Apr 09 2014 - 15:45:31 CDT)
- problem with movie generation Carlos Simmerling (Wed Apr 09 2014 - 10:31:51 CDT)
- Changing colors during a dynamics Luca Bellarosa (Wed Apr 09 2014 - 09:29:21 CDT)
- psf file with D-proline Gurunath Katagi (Wed Apr 09 2014 - 01:18:35 CDT)
- problem displaying CPK Misraim Enrique Gurrola Acosta (Tue Apr 08 2014 - 21:04:12 CDT)
- posting from Yahoo addresses disabled Jim Phillips (Tue Apr 08 2014 - 17:45:46 CDT)
- problem with 'atomselect' command Ashish .Chauniyal (Tue Apr 08 2014 - 12:23:05 CDT)
- FFTK: bond and angle parameters denilson_at_dqi.ufla.br (Mon Apr 07 2014 - 14:42:28 CDT)
- Minimal VMD Jacob Durrant (Mon Apr 07 2014 - 14:42:47 CDT)
- RE锛 Re: RE锛 visualize gromacs trajectory in vmd sunyeping (Mon Apr 07 2014 - 06:52:55 CDT)
- Feature request: capturing tool location and steering forces in IMD trajectory Tristan Croll (Mon Apr 07 2014 - 00:45:51 CDT)
- Re: Feature request: capturing tool location and steering forces in IMD trajectory Axel Kohlmeyer (Mon Apr 07 2014 - 01:23:09 CDT)
- Movie Smoothing error Maria Pikoula (Sun Apr 06 2014 - 08:36:15 CDT)
- Dynamical bond rendering Caro Miguel (Sat Apr 05 2014 - 01:36:34 CDT)
- SHAKE or RATTLE algorithm Ramin Ekhteiari (Fri Apr 04 2014 - 15:08:04 CDT)
- VMD color by user Zhencheng Ren (Fri Apr 04 2014 - 14:24:53 CDT)
- ffTk user feature request Jim Parker (Fri Apr 04 2014 - 05:58:57 CDT)
- ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Jim Parker (Fri Apr 04 2014 - 05:42:33 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Mayne, Christopher G (Fri Apr 04 2014 - 11:08:13 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Jim Parker (Fri Apr 04 2014 - 14:32:24 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Mayne, Christopher G (Mon Apr 07 2014 - 12:55:08 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run JC Gumbart (Tue Apr 08 2014 - 15:05:23 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Jim Parker (Wed Apr 23 2014 - 07:13:37 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Jim Parker (Fri Apr 04 2014 - 14:32:24 CDT)
- Re: ffTK generated Gaussian file puts "atoms too close" and Gaussian fails to run Mayne, Christopher G (Fri Apr 04 2014 - 11:08:13 CDT)
- GPU-accelerated ionization Tristan Croll (Thu Apr 03 2014 - 20:05:50 CDT)
- writing velocities from VMD Marcela Madrid (Thu Apr 03 2014 - 19:31:10 CDT)
- Gaussian Log File problem Hay, Stuart (Thu Apr 03 2014 - 12:35:55 CDT)
- Comparing Structures with Multiseq and Qres Donald Karr (Thu Apr 03 2014 - 10:33:55 CDT)
- HOW MAKE CROSS CO-RELATION MATRIX rajan kumar (Thu Apr 03 2014 - 04:06:55 CDT)
- Visualizing volume slice from PME electrostatics Riccardo Innocenti Malini (Thu Apr 03 2014 - 03:40:28 CDT)
- BUG? Hbond rep brakes RowInterleaved Stereo VMD 1.9.2a35 Norman Geist (Thu Apr 03 2014 - 02:17:38 CDT)
- secondary structure inconsistency Charles Greenberg (Wed Apr 02 2014 - 12:39:33 CDT)
- RE锛 visualize gromacs trajectory in vmd sunyeping (Wed Apr 02 2014 - 10:40:07 CDT)
- "Hands-on" Workshop on Computational Biophysics at Lake Tahoe, August 4-8, 2014 David Brandon (Tue Apr 01 2014 - 16:23:08 CDT)
- visualize gromacs trajectory in vmd sunyeping (Tue Apr 01 2014 - 10:43:41 CDT)
- generatei psf file for a dimer protein Ramin Ekhteiari (Tue Apr 01 2014 - 08:24:33 CDT)
- set view along an chosen axis wei gao (Mon Mar 31 2014 - 15:44:07 CDT)
- Assigning different temperatures in the same simulaiton Jhonatam Cordeiro Rodrigues (Mon Mar 31 2014 - 08:25:06 CDT)
- Fwd: Align specific residues of two structures Hailin Huang (Mon Mar 31 2014 - 02:07:44 CDT)
- Align specific residues of two structures Hailin Huang (Fri Mar 28 2014 - 15:37:37 CDT)
- TCL scripting question: how to make a list of atomselections persistent? Tristan Croll (Thu Mar 27 2014 - 19:04:22 CDT)
- AW: TCL scripting question: how to make a list of atomselections persistent? Norman Geist (Fri Mar 28 2014 - 03:00:02 CDT)
- AW: TCL scripting question: how to make a list of atomselections persistent? Norman Geist (Fri Mar 28 2014 - 03:02:24 CDT)
- selecting every nth residue in a protein Research Jubilant (Thu Mar 27 2014 - 15:29:06 CDT)
- atomselect across two different molids Ravinder Abrol (Thu Mar 27 2014 - 15:15:42 CDT)
- cant find output file from tachyon render. Semeraro, B David (Thu Mar 27 2014 - 08:50:56 CDT)
- Re: cant find output file from tachyon render. Massimiliano Porrini (Thu Mar 27 2014 - 11:51:33 CDT)
- RE: cant find output file from tachyon render. Semeraro, B David (Thu Mar 27 2014 - 12:07:45 CDT)
- Re: cant find output file from tachyon render. Josh Vermaas (Thu Mar 27 2014 - 13:12:33 CDT)
- RE: cant find output file from tachyon render. Semeraro, B David (Thu Mar 27 2014 - 14:30:05 CDT)
- RE: cant find output file from tachyon render. Joaquim Rui de Castro Rodrigues (Thu Mar 27 2014 - 14:52:23 CDT)
- RE: cant find output file from tachyon render. Semeraro, B David (Thu Mar 27 2014 - 14:56:12 CDT)
- Re: cant find output file from tachyon render. Ajasja Ljubeti膷 (Thu Mar 27 2014 - 15:41:47 CDT)
- RE: cant find output file from tachyon render. Semeraro, B David (Thu Mar 27 2014 - 15:55:28 CDT)
- RE: cant find output file from tachyon render. Semeraro, B David (Thu Mar 27 2014 - 12:07:45 CDT)
- Re: cant find output file from tachyon render. Massimiliano Porrini (Thu Mar 27 2014 - 11:51:33 CDT)
- Multiple proteins in MDFF? Lyman K Monroe (Tue Mar 25 2014 - 20:59:49 CDT)
- multiple proteins Lyman K Monroe (Tue Mar 25 2014 - 20:58:41 CDT)
- topo writelammpsdata: size limitation? Laurent Joly (Sun Mar 23 2014 - 18:11:29 CDT)
- impropers dropped when using psfgen Michael F. Harrach (Fri Mar 21 2014 - 11:36:31 CDT)
- problem for VMD extension_radial pair distribution function_truncation Ming-Tsung Lee (Fri Mar 21 2014 - 10:23:22 CDT)
- Re: Writing DCD from modified coordinates Ivan Gregoretti (Fri Mar 21 2014 - 07:31:32 CDT)
- Writing DCD from modified coordinates Adam Goler (Thu Mar 20 2014 - 23:59:33 CDT)
- Broken link to MacKerell parameterization tutorial Jim Parker (Thu Mar 20 2014 - 14:26:40 CDT)
- Some useful scripts for people using CHARMM-36 glycans Tristan Croll (Thu Mar 20 2014 - 01:20:29 CDT)
- wrapping option in namd Research Jubilant (Wed Mar 19 2014 - 21:34:57 CDT)
- Writing dcd/pdb file of selection from NAMD velocity dcd file Chola Regmi (Wed Mar 19 2014 - 16:29:06 CDT)
- XRD from a structure Fatemesadat Emami (Wed Mar 19 2014 - 16:01:03 CDT)
- psfgen, adding residues with command "residue" Ivan Gregoretti (Wed Mar 19 2014 - 13:07:42 CDT)
- Get num. of residues spandu K (Wed Mar 19 2014 - 01:38:44 CDT)
- psfgen and Alternate location indicator Ivan Gregoretti (Tue Mar 18 2014 - 13:53:18 CDT)
- Error : Lammps-data file error after merging two structures. Pavan Miriyala (Tue Mar 18 2014 - 10:47:37 CDT)
- RE锛 removing water from dcd file sunyeping (Tue Mar 18 2014 - 08:13:31 CDT)
- removing water from dcd file Ramin Ekhteiari (Tue Mar 18 2014 - 08:01:41 CDT)
- Unwrapping a trajectory with H2O Kipp Johnson (Mon Mar 17 2014 - 18:08:45 CDT)
- Custom Visualization of Atom Properties Change with Color Nima Nouri (Sun Mar 16 2014 - 16:59:58 CDT)
- adding new colors Leonhard Henkes (Thu Mar 13 2014 - 09:21:57 CDT)
- SURF error Shomesankar Bhunia (Wed Mar 12 2014 - 05:17:40 CDT)
- radial pair distribution function Adam Goler (Tue Mar 11 2014 - 20:03:55 CDT)
- Segmentation fault Simon Etter (Tue Mar 11 2014 - 07:31:17 CDT)
- Re: Segmentation fault John Stone (Tue Mar 11 2014 - 10:10:44 CDT)
- Re: Segmentation fault Simon Etter (Tue Mar 11 2014 - 10:21:07 CDT)
- Re: Segmentation fault John Stone (Tue Mar 11 2014 - 10:41:00 CDT)
- Re: Segmentation fault Simon Etter (Tue Mar 11 2014 - 11:04:22 CDT)
- Re: Segmentation fault Axel Kohlmeyer (Tue Mar 11 2014 - 11:42:18 CDT)
- Re: Segmentation fault Ivan Gregoretti (Tue Mar 11 2014 - 12:42:31 CDT)
- Re: Segmentation fault John Stone (Tue Mar 11 2014 - 12:02:14 CDT)
- Re: Segmentation fault Simon Etter (Tue Mar 11 2014 - 10:21:07 CDT)
- RE: Segmentation fault Cosseddu, Salvatore (Tue Mar 11 2014 - 10:00:30 CDT)
- Re: Segmentation fault John Stone (Tue Mar 11 2014 - 10:10:44 CDT)
- Call for participation: ISQBP Meeting, Telluride 15-19.06.2014 Vlad Cojocaru (Mon Mar 10 2014 - 11:38:42 CDT)
- Fedora 20 x86_64 + ibus + sazanami fonts + GNOME => VMD 1.9.1 crashes Ren Genz (Sun Mar 09 2014 - 08:51:55 CDT)
- Changing bond numbers T K (Sun Mar 09 2014 - 00:52:22 CST)
- Velocity storing in VMD Maria Pikoula (Sat Mar 08 2014 - 05:51:44 CST)
- Re: Velocity storing in VMD Maxim Belkin (Sat Mar 08 2014 - 10:50:07 CST)
- Re: Velocity storing in VMD Maria Pikoula (Sat Mar 08 2014 - 18:52:56 CST)
- Re: Velocity storing in VMD Maxim Belkin (Sun Mar 09 2014 - 03:21:22 CDT)
- Re: Velocity storing in VMD Maria Pikoula (Sun Mar 09 2014 - 08:28:42 CDT)
- Re: Velocity storing in VMD Maxim Belkin (Sun Mar 09 2014 - 11:05:43 CDT)
- Re: Velocity storing in VMD Maria Pikoula (Sun Mar 09 2014 - 11:36:48 CDT)
- Re: Velocity storing in VMD Maxim Belkin (Sun Mar 09 2014 - 11:47:45 CDT)
- Re: Velocity storing in VMD Maria Pikoula (Sun Mar 09 2014 - 11:59:20 CDT)
- Re: Velocity storing in VMD Maxim Belkin (Sun Mar 09 2014 - 12:52:16 CDT)
- Re: Velocity storing in VMD Maria Pikoula (Sat Mar 08 2014 - 18:52:56 CST)
- Re: Velocity storing in VMD Maria Pikoula (Sat Mar 08 2014 - 18:52:56 CST)
- Re: Velocity storing in VMD Maxim Belkin (Sat Mar 08 2014 - 10:50:07 CST)
- distance selection Antonio Tilocca (Fri Mar 07 2014 - 10:41:43 CST)
- VMD within emacs Cosseddu, Salvatore (Thu Mar 06 2014 - 11:17:53 CST)
- How to delete atoms in graphene sheet Pavan Miriyala (Wed Mar 05 2014 - 10:21:29 CST)
- Compile VMD saeed (Wed Mar 05 2014 - 09:52:59 CST)
- Generalisation of chirality plugin to handle chiral bonds spanning residues Tristan Croll (Wed Mar 05 2014 - 05:48:46 CST)
- Mutate Residue Extension Daou, Joseph A (Tue Mar 04 2014 - 14:25:38 CST)
- Writing new coordinates to file. Dawid das (Mon Mar 03 2014 - 15:25:14 CST)
- Re: Writing new coordinates to file. Maxim Belkin (Mon Mar 03 2014 - 15:49:00 CST)
- Re: Writing new coordinates to file. Maxim Belkin (Mon Mar 03 2014 - 15:37:36 CST)
- Re: Writing new coordinates to file. Axel Kohlmeyer (Mon Mar 03 2014 - 16:04:14 CST)
- Re: Writing new coordinates to file. Josh Vermaas (Mon Mar 03 2014 - 16:27:05 CST)
- rlwrap: No match. Subbarao Kanchi (Mon Mar 03 2014 - 07:34:17 CST)
- Re: rlwrap: No match. Axel Kohlmeyer (Mon Mar 03 2014 - 08:15:26 CST)
- Re: rlwrap: No match. Subbarao Kanchi (Mon Mar 03 2014 - 08:24:55 CST)
- Re: rlwrap: No match. Axel Kohlmeyer (Mon Mar 03 2014 - 08:32:39 CST)
- Re: rlwrap: No match. Daniel Strahs (Fri Aug 01 2014 - 15:34:01 CDT)
- Re: rlwrap: No match. Axel Kohlmeyer (Fri Aug 01 2014 - 15:51:43 CDT)
- Re: rlwrap: No match. Daniel Strahs (Fri Aug 01 2014 - 16:16:13 CDT)
- Re: rlwrap: No match. Axel Kohlmeyer (Fri Aug 01 2014 - 16:23:39 CDT)
- Re: rlwrap: No match. Subbarao Kanchi (Mon Mar 03 2014 - 08:24:55 CST)
- Re: rlwrap: No match. Axel Kohlmeyer (Mon Mar 03 2014 - 08:15:26 CST)
- Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Sun Mar 02 2014 - 14:42:31 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Axel Kohlmeyer (Sun Mar 02 2014 - 15:20:48 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Sun Mar 02 2014 - 16:54:02 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Maxim Belkin (Sun Mar 02 2014 - 17:54:44 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Mon Mar 03 2014 - 10:08:18 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 09:45:23 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Tue Mar 04 2014 - 09:51:08 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 10:35:49 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 10:47:34 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Tue Mar 04 2014 - 10:55:15 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Maxim Belkin (Tue Mar 04 2014 - 10:55:22 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 11:09:46 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Tue Mar 04 2014 - 11:26:01 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Maxim Belkin (Tue Mar 04 2014 - 11:16:12 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 12:09:54 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Joshua Anderson (Tue Mar 04 2014 - 13:01:15 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Tue Mar 04 2014 - 15:39:26 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 19:31:53 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 19:39:23 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Tue Mar 04 2014 - 19:50:32 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Wed Mar 05 2014 - 09:43:44 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Wed Mar 05 2014 - 16:15:00 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Wed Mar 05 2014 - 16:40:49 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 John Stone (Wed Mar 05 2014 - 16:49:42 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Phillips, Carolyn L. (Sun Mar 02 2014 - 16:54:02 CST)
- Re: Issues using VMD 1.91. with CUDA on Mac OSX 10.9.1 Axel Kohlmeyer (Sun Mar 02 2014 - 15:20:48 CST)
- Drawing circles and tooltips. Lee-Ping Wang (Fri Feb 28 2014 - 08:58:35 CST)
- Re: Drawing circles and tooltips. Benjamin Kaduk (Fri Feb 28 2014 - 21:57:36 CST)
- Re: Drawing circles and tooltips. John Stone (Mon Mar 03 2014 - 10:22:46 CST)
- charges optimisation of a cationic molecule with ffTK Massimiliano Porrini (Fri Feb 28 2014 - 05:18:51 CST)
- isosurfaces with non-orthorhombic unit cells using cube file Karen Chan (Thu Feb 27 2014 - 17:54:03 CST)
- Compiling 64bit VMD Nima Nouri (Wed Feb 26 2014 - 03:15:31 CST)
- issue(s) with ffTK of vmd-1.9.2a35 Massimiliano Porrini (Tue Feb 25 2014 - 16:18:25 CST)
- Nanostructure Plugin from TCL Script Michail Palaiokostas Avramidis (Tue Feb 25 2014 - 11:41:32 CST)
- Failed to compile VMD 1.9.2 on OSX 10.9 Zhenquan Hu (Tue Feb 25 2014 - 10:19:01 CST)
- Update Plugin DanLiu (Tue Feb 25 2014 - 05:18:07 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Sun Feb 23 2014 - 17:39:13 CST)
- RE: psfgen and unknown residue types Tristan Croll (Sun Feb 23 2014 - 17:48:04 CST)
- RE: psfgen and unknown residue types Tristan Croll (Sun Feb 23 2014 - 18:13:23 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Sun Feb 23 2014 - 18:56:42 CST)
- Re: psfgen and unknown residue types Boris Steipe (Sun Feb 23 2014 - 21:19:42 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Mon Feb 24 2014 - 09:51:24 CST)
- Re: psfgen and unknown residue types Boris Steipe (Mon Feb 24 2014 - 10:16:00 CST)
- Re: psfgen and unknown residue types Josh Vermaas (Mon Feb 24 2014 - 11:20:10 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Mon Feb 24 2014 - 15:06:40 CST)
- Re: psfgen and unknown residue types Josh Vermaas (Mon Feb 24 2014 - 15:14:09 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Mon Feb 24 2014 - 17:32:30 CST)
- Re: psfgen and unknown residue types Josh Vermaas (Mon Feb 24 2014 - 18:05:26 CST)
- Re: psfgen and unknown residue types John Stone (Mon Feb 24 2014 - 18:22:48 CST)
- RE: psfgen and unknown residue types Tristan Croll (Mon Feb 24 2014 - 19:43:13 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Tue Feb 25 2014 - 07:35:49 CST)
- Re: psfgen and unknown residue types Ivan Gregoretti (Sun Feb 23 2014 - 18:56:42 CST)
- psfgen and unknown residue types Ivan Gregoretti (Sat Feb 22 2014 - 17:29:35 CST)
- Oculus Rift support in VMD? Mirco Wahab (Sat Feb 22 2014 - 03:40:21 CST)
- Atom selection to identify residues that clash Jacob Durrant (Fri Feb 21 2014 - 21:56:32 CST)
- importing topology file from PRODRG chandrakala gowda (Fri Feb 21 2014 - 10:48:00 CST)
- manually change secondary structure Beat Meier (Fri Feb 21 2014 - 07:46:02 CST)
- Security problem? Olaf Lenz (Wed Feb 19 2014 - 06:01:26 CST)
- coordinates: visual and in-file Chetan Mahajan (Tue Feb 18 2014 - 19:18:14 CST)
- ACS COMP Division student and junior faculty awards for Fall 2014 meeting in San Francisco Carlos Simmerling (Tue Feb 18 2014 - 15:30:45 CST)
- Extracting complex of protein-ligand+water from every frame of DCD trajectory KK R (Tue Feb 18 2014 - 13:30:19 CST)
- Bounced VMD-L postings... John Stone (Tue Feb 18 2014 - 13:17:04 CST)
- Webinar on VMD's use of GPUs to accelerate MD visualization and analysis John Stone (Mon Feb 17 2014 - 16:15:03 CST)
- Pruning defunct users and bouncing email accounts from VMD-L... John Stone (Mon Feb 17 2014 - 10:24:16 CST)
- help with stereo viz on new samsung "3D" LCD and quadro card Carlos Simmerling (Fri Feb 14 2014 - 13:25:25 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card John Stone (Mon Feb 17 2014 - 11:53:45 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card Carlos Simmerling (Tue Feb 18 2014 - 07:06:04 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card John Stone (Tue Feb 18 2014 - 10:34:55 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card Carlos Simmerling (Tue Feb 18 2014 - 10:53:04 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card John Stone (Tue Feb 18 2014 - 13:04:18 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card Carlos Simmerling (Tue Feb 18 2014 - 07:06:04 CST)
- Re: help with stereo viz on new samsung "3D" LCD and quadro card John Stone (Mon Feb 17 2014 - 11:53:45 CST)
- How upgrade a molfile plugin? Arham Amouie (Sun Feb 16 2014 - 12:28:17 CST)
- Tachyon question Andrew DeYoung (Sun Feb 16 2014 - 09:48:37 CST)
- AW: namd-l: Solvation in non standard solvent Norman Geist (Fri Feb 14 2014 - 06:47:51 CST)
- deleting trajectory paths Research Jubilant (Wed Feb 12 2014 - 19:31:53 CST)
- Modulus atom selection Jacob Durrant (Wed Feb 12 2014 - 14:37:09 CST)
- Simplest file format that includes atom color? Arham Amouie (Wed Feb 12 2014 - 13:28:44 CST)
- AW: Simplest file format that includes atom color? Norman Geist (Thu Feb 13 2014 - 00:20:11 CST)
- Re: Simplest file format that includes atom color? Olaf Lenz (Thu Feb 13 2014 - 02:18:39 CST)
- Re: Simplest file format that includes atom color? Arham Amouie (Thu Feb 13 2014 - 05:06:07 CST)
- Re: Simplest file format that includes atom color? Arham Amouie (Thu Feb 13 2014 - 05:27:45 CST)
- Re: Simplest file format that includes atom color? Arham Amouie (Sun Feb 16 2014 - 05:44:20 CST)
- Re: Simplest file format that includes atom color? Olaf Lenz (Mon Feb 17 2014 - 02:44:09 CST)
- AW: Simplest file format that includes atom color? Norman Geist (Mon Feb 17 2014 - 05:36:01 CST)
- Re: Simplest file format that includes atom color? Arham Amouie (Tue Feb 18 2014 - 03:59:27 CST)
- Re: Simplest file format that includes atom color? Olaf Lenz (Tue Feb 18 2014 - 04:21:08 CST)
- Re: Simplest file format that includes atom color? Arham Amouie (Tue Feb 18 2014 - 04:52:20 CST)
- Re: Simplest file format that includes atom color? John Stone (Mon Feb 17 2014 - 09:47:17 CST)
- Re: Simplest file format that includes atom color? Arham Amouie (Tue Feb 18 2014 - 05:17:57 CST)
- Re: Simplest file format that includes atom color? Olaf Lenz (Mon Feb 17 2014 - 05:48:56 CST)
- Re: Simplest file format that includes atom color? Axel Kohlmeyer (Mon Feb 17 2014 - 06:45:42 CST)
- Re: Simplest file format that includes atom color? Olaf Lenz (Mon Feb 17 2014 - 06:29:54 CST)
- (no subject) Arham Amouie (Wed Feb 12 2014 - 13:22:40 CST)
- Installation of VMD topotools Jeeno Jose (Tue Feb 11 2014 - 11:22:07 CST)
- reg extracting coordinates for first water shell. surya narayanan chandrasekaran (Tue Feb 11 2014 - 06:52:31 CST)
- VMD can't read 1OXY Boris Steipe (Mon Feb 10 2014 - 21:16:55 CST)
- Re: VMD can't read 1OXY Axel Kohlmeyer (Mon Feb 10 2014 - 22:20:25 CST)
- Re: VMD can't read 1OXY Boris Steipe (Tue Feb 11 2014 - 09:51:10 CST)
- RE: VMD can't read 1OXY Bennion, Brian (Tue Feb 11 2014 - 11:03:32 CST)
- Re: VMD can't read 1OXY Ivan Gregoretti (Tue Feb 11 2014 - 12:01:59 CST)
- RE: VMD can't read 1OXY Bennion, Brian (Tue Feb 11 2014 - 12:17:16 CST)
- RE: VMD can't read 1OXY Bennion, Brian (Tue Feb 11 2014 - 12:31:35 CST)
- Re: VMD can't read 1OXY Boris Steipe (Tue Feb 11 2014 - 16:15:13 CST)
- Re: VMD can't read 1OXY John Stone (Mon Feb 17 2014 - 10:40:21 CST)
- Re: VMD can't read 1OXY Josh Vermaas (Tue Feb 11 2014 - 09:42:22 CST)
- Re: VMD can't read 1OXY Boris Steipe (Tue Feb 11 2014 - 09:51:10 CST)
- Re: VMD can't read 1OXY Maxim Belkin (Tue Feb 11 2014 - 09:31:47 CST)
- Re: VMD can't read 1OXY Axel Kohlmeyer (Mon Feb 10 2014 - 22:20:25 CST)
- Do I need a "professional" graphics card? Charles McAnany (Sun Feb 09 2014 - 13:29:41 CST)
- Script commands that control the display of periodic images Eric Smoll (Sat Feb 08 2014 - 21:46:40 CST)
- Minor bug: clash between Multiseq representations and AutoIMD Tristan Croll (Sat Feb 08 2014 - 18:40:16 CST)
- Calculating density for a molecule Research Jubilant (Fri Feb 07 2014 - 11:36:41 CST)
- measure dihedral angle for all the loaded pdb files chandrakala gowda (Fri Feb 07 2014 - 10:08:55 CST)
- loading .xtc file Chetan Mahajan (Thu Feb 06 2014 - 20:18:25 CST)
- FFTK: Error when optimizing charges Shane.OMahony (Thu Feb 06 2014 - 08:10:00 CST)
- porcupine plot Revthi Sanker (Wed Feb 05 2014 - 08:05:55 CST)
- How do you construct a .cgc file that actually works? Freda Lim (IHPC) (Wed Feb 05 2014 - 00:12:20 CST)
- Query on introducing a protein Aditya Padhi (Tue Feb 04 2014 - 23:12:10 CST)
- Re: SScache performance; fast secondary structure assignment Axel Kohlmeyer (Tue Feb 04 2014 - 07:44:58 CST)
- AW: SScache performance; fast secondary structure assignment Norman Geist (Tue Feb 04 2014 - 08:00:29 CST)
- Re: SScache performance; fast secondary structure assignment John Stone (Tue Feb 04 2014 - 09:00:55 CST)
- Re: SScache performance; fast secondary structure assignment John Stone (Tue Feb 04 2014 - 10:13:51 CST)
- SScache performance; fast secondary structure assignment Norman Geist (Tue Feb 04 2014 - 06:40:26 CST)
- Loading molfileplugins without modifying vmd install Daniel Russel (Mon Feb 03 2014 - 16:04:55 CST)
- AW: wrapper for VMD to read compressed .xz files Norman Geist (Mon Feb 03 2014 - 01:01:49 CST)
- triple bond parametrization Tim Lo (Fri Jan 31 2014 - 20:11:55 CST)
- wrapper for VMD to read compressed .xz files Bennion, Brian (Fri Jan 31 2014 - 16:33:18 CST)
- Re: self-diffusion coefficient from RMSD Ali Alizadeh (Thu Jan 30 2014 - 06:57:55 CST)
- Adding a keyword to mol addfile Tristan Croll (Wed Jan 29 2014 - 22:39:41 CST)
- VMD crash on large DCD files. Villalain Boullon, Jose (Wed Jan 29 2014 - 12:46:18 CST)
- background color Fateme Sadat Emami (Mon Jan 27 2014 - 11:08:58 CST)
- psfgen error for Argon atoms Arash Azari (Sun Jan 26 2014 - 15:06:16 CST)
- Re: psfgen error for Argon atoms Josh Vermaas (Sun Jan 26 2014 - 16:29:06 CST)
- Re: psfgen error for Argon atoms Arash Azari (Mon Jan 27 2014 - 00:51:37 CST)
- Re: psfgen error for Argon atoms Boris Steipe (Mon Jan 27 2014 - 10:14:28 CST)
- Re: psfgen error for Argon atoms Josh Vermaas (Mon Jan 27 2014 - 11:41:08 CST)
- Re: psfgen error for Argon atoms Arash Azari (Mon Jan 27 2014 - 15:10:16 CST)
- Re: psfgen error for Argon atoms Axel Kohlmeyer (Mon Jan 27 2014 - 11:05:02 CST)
- Re: psfgen error for Argon atoms Arash Azari (Mon Jan 27 2014 - 00:51:37 CST)
- Re: psfgen error for Argon atoms Josh Vermaas (Sun Jan 26 2014 - 16:29:06 CST)
- RE: namd-l: How to solvate a protein using C36 and not C27 Tristan Croll (Sat Jan 25 2014 - 23:07:30 CST)
- Upgrade CUDA5.5 driver and vmd doesn't work anymore Damiano Buratto (Fri Jan 24 2014 - 10:09:36 CST)
- Crash with molfile plugin when doing "Load data into molecule" Daniel Russel (Thu Jan 23 2014 - 23:23:06 CST)
- FATAL ERROR: UNABLE TO FIND DIHEDRAL PARAMETERS FOR NH3 CT1 CT2A CT2 (ATOMS 1 5 7 10) Allen, Caley R (Thu Jan 23 2014 - 13:37:06 CST)
- 3D texture mapping Nicola De Mitri (Thu Jan 23 2014 - 04:07:49 CST)
- Creating a Regular Structure Fatemesadat Emami (Wed Jan 22 2014 - 17:38:31 CST)
- VMD text mode commands Subbarao Kanchi (Wed Jan 22 2014 - 13:29:55 CST)
- select and save every X atom Steven Neumann (Tue Jan 21 2014 - 15:01:19 CST)
- misleading documentation for -res switch in MDFF plugin Tristan Croll (Mon Jan 20 2014 - 19:50:35 CST)
- Question about measure cluster manali_at_bioinfo.net.in (Mon Jan 20 2014 - 05:43:39 CST)
- Question about measure cluster manali_at_bioinfo.net.in (Mon Jan 20 2014 - 05:43:39 CST)
- Bond order cut-off value Sanjib Chowdhury (Thu Jan 16 2014 - 16:53:54 CST)
- DCD is not detected as protein but single pdbs are? Michael LeVine (Wed Jan 15 2014 - 19:45:48 CST)
- merging multiple structures Martin, Erik W (Wed Jan 15 2014 - 12:49:32 CST)
- PDMS with VMD Buddhika Jayasena (Tue Jan 14 2014 - 16:07:07 CST)
- RDF calculation . Juita (Mon Jan 13 2014 - 18:27:09 CST)
- centering problem in salvation box Ramin Ekhteiari (Fri Jan 10 2014 - 12:01:22 CST)
- strange problems adding extra bonds to interactive simulations Tristan Croll (Thu Jan 09 2014 - 20:03:39 CST)
- Re: strange problems adding extra bonds to interactive simulations Axel Kohlmeyer (Thu Jan 09 2014 - 21:50:21 CST)
- Display APBS on Solvent Accessible Surface Ricardo O. S. Soares (Thu Jan 09 2014 - 15:12:41 CST)
- Viscosity calculation Yan Shen (Thu Jan 09 2014 - 13:19:25 CST)
- Surface Area Calculation flavio seixas (Tue Jan 07 2014 - 12:40:57 CST)
- RDF Normalization Mike Makowski (Mon Jan 06 2014 - 15:14:21 CST)
- citing SODIUM program Shyno Mathew (Sat Jan 04 2014 - 10:45:36 CST)
- measure command in vmd 吕康杰 (Fri Jan 03 2014 - 21:03:43 CST)
- Issues with tachyon internal renderer Tyler Smith (Fri Jan 03 2014 - 14:19:36 CST)
- RE: Issues with tachyon internal renderer Ryan Hoffman (Fri Jan 03 2014 - 16:07:52 CST)
- Re: Issues with tachyon internal renderer Josh Vermaas (Fri Jan 03 2014 - 16:13:15 CST)
- cgtools Gurunath Katagi (Wed Jan 01 2014 - 04:08:07 CST)
- why tutorial cannot be played? Albert (Fri Dec 27 2013 - 14:32:17 CST)
- setup path to write Jorgen Simonsen (Fri Dec 27 2013 - 13:38:32 CST)
- VMD's NAMD GUI Douglas Houston (Tue Dec 24 2013 - 06:13:24 CST)
- constructing a .tpr Rasoul Nasiri (Tue Dec 24 2013 - 02:30:03 CST)
- Problem while installing VMD indu purushothaman (Tue Dec 24 2013 - 01:18:38 CST)
- How to generate a PDB file of the protein containing one phosphoserine Sunita Patel (Sat Dec 21 2013 - 06:42:12 CST)
- Regarding calculating principal Axis Vectors using VMD ssaurabh_at_physics.iisc.ernet.in (Fri Dec 20 2013 - 14:09:28 CST)
- VMD on Blue Waters Avisek Das (Fri Dec 20 2013 - 11:55:25 CST)
- slice image Tomek Wlodarski (Tue Dec 17 2013 - 11:09:38 CST)
- (no subject) jeevan gc (Mon Dec 16 2013 - 17:00:04 CST)
- Define bond length Lee, Sa (Mon Dec 16 2013 - 11:41:38 CST)
- Convert RNA to DNA Iman Jeddi (Sat Dec 14 2013 - 11:54:12 CST)
- Unit of RMSF calculated by measure HIRA BATOOL (Sat Dec 14 2013 - 05:30:17 CST)
- HBonds representation draws bonds with atoms (Hs) not included in the selection Camilo Andr閟 Jimenez Cruz (Fri Dec 13 2013 - 09:35:37 CST)
- changing chain id and pdb generating Ramin Ekhteiari (Thu Dec 12 2013 - 03:06:36 CST)
- AMD vs. nvidia support J茅r么me H茅nin (Wed Dec 11 2013 - 11:31:12 CST)
- generated pdb file via vmd Ramin Ekhteiari (Wed Dec 11 2013 - 04:26:39 CST)
- AW: AW: AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Norman Geist (Wed Dec 11 2013 - 01:06:44 CST)
- how can we improve it in VMD? Albert (Tue Dec 10 2013 - 01:55:04 CST)
- AW: AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Norman Geist (Tue Dec 10 2013 - 00:57:37 CST)
- Re: Change transparency along a trajectory Axel Kohlmeyer (Mon Dec 09 2013 - 08:13:35 CST)
- Atomic trajectory to COM trajectory, Ali Alizadeh (Mon Dec 09 2013 - 07:09:30 CST)
- Re: Atomic trajectory to COM trajectory, Axel Kohlmeyer (Mon Dec 09 2013 - 08:32:15 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Mon Dec 09 2013 - 09:55:58 CST)
- Re: Atomic trajectory to COM trajectory, Axel Kohlmeyer (Mon Dec 09 2013 - 10:21:08 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Mon Dec 09 2013 - 10:26:49 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Mon Dec 09 2013 - 12:43:57 CST)
- Re: Atomic trajectory to COM trajectory, Axel Kohlmeyer (Mon Dec 09 2013 - 13:09:22 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Mon Dec 09 2013 - 13:13:49 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Wed Dec 11 2013 - 17:29:26 CST)
- Re: Atomic trajectory to COM trajectory, Axel Kohlmeyer (Wed Dec 11 2013 - 23:53:59 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Tue Feb 04 2014 - 15:21:03 CST)
- Re: Atomic trajectory to COM trajectory, Maxim Belkin (Tue Feb 04 2014 - 16:00:03 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Wed Feb 05 2014 - 05:31:39 CST)
- Re: Atomic trajectory to COM trajectory, Maxim Belkin (Wed Feb 05 2014 - 10:53:15 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Wed Feb 05 2014 - 14:20:17 CST)
- Re: Atomic trajectory to COM trajectory, Maxim Belkin (Wed Feb 05 2014 - 14:30:37 CST)
- Re: Atomic trajectory to COM trajectory, Ali Alizadeh (Mon Dec 09 2013 - 09:55:58 CST)
- Re: Atomic trajectory to COM trajectory, Axel Kohlmeyer (Mon Dec 09 2013 - 08:32:15 CST)
- Change transparency along a trajectory Gaetano Calabr (Mon Dec 09 2013 - 05:55:12 CST)
- AW: AW: hydrogen bond criteria Norman Geist (Fri Dec 06 2013 - 01:14:33 CST)
- Fwd: dcd file uploading problem Subbusinger N (Thu Dec 05 2013 - 21:59:32 CST)
- hydrogen bond criteria Alexandre PERRET (Thu Dec 05 2013 - 04:31:55 CST)
- Combination of bigdcd.tcl and topotools plugin Sofya Lushchekina (Wed Dec 04 2013 - 10:34:47 CST)
- line DanLiu (Tue Nov 19 2013 - 02:01:37 CST)
- RE锛 Re: RE锛 hydrogen bond cutoff value sunyeping (Tue Dec 03 2013 - 06:57:20 CST)
- Dowser installation trouble James Marsh (Tue Dec 03 2013 - 03:09:29 CST)
- RE锛 hydrogen bond cutoff value sunyeping (Tue Dec 03 2013 - 01:45:26 CST)
- hydrogen bond cutoff value sunyeping (Mon Dec 02 2013 - 21:37:00 CST)
- Domain Error while using ParseFEP plugin Shyno Mathew (Mon Dec 02 2013 - 11:42:37 CST)
- Re: Domain Error while using ParseFEP plugin Josh Vermaas (Tue Dec 03 2013 - 10:08:48 CST)
- Re: Domain Error while using ParseFEP plugin John Stone (Tue Dec 03 2013 - 10:46:15 CST)
- Re: Domain Error while using ParseFEP plugin Shyno Mathew (Wed Dec 04 2013 - 10:41:18 CST)
- Re: Domain Error while using ParseFEP plugin Shyno Mathew (Sun Dec 08 2013 - 22:40:58 CST)
- Re: Domain Error while using ParseFEP plugin Shyno Mathew (Mon Dec 09 2013 - 11:01:38 CST)
- Re: Domain Error while using ParseFEP plugin Shyno Mathew (Mon Dec 09 2013 - 12:23:29 CST)
- Re: Domain Error while using ParseFEP plugin John Stone (Tue Dec 10 2013 - 10:32:07 CST)
- Re: Domain Error while using ParseFEP plugin John Stone (Tue Dec 03 2013 - 10:46:15 CST)
- Re: Domain Error while using ParseFEP plugin Josh Vermaas (Tue Dec 03 2013 - 10:08:48 CST)
- vmd display problem Andy Lam (Sat Nov 30 2013 - 19:22:27 CST)
- atoms selection/special characters Fatemesadat Emami (Fri Nov 29 2013 - 18:13:17 CST)
- Re: atoms selection/special characters Axel Kohlmeyer (Fri Nov 29 2013 - 19:17:08 CST)
- Re: atoms selection/special characters Axel Kohlmeyer (Fri Nov 29 2013 - 20:43:33 CST)
- Re: atoms selection/special characters Fatemesadat Emami (Fri Dec 20 2013 - 20:52:32 CST)
- Re: atoms selection/special characters mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:04:07 CST)
- Re: atoms selection/special characters mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:03:29 CST)
- Re: atoms selection/special characters mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:06:18 CST)
- Re: atoms selection/special characters mbelkin_at_ks.uiuc.edu (Sat Dec 21 2013 - 02:06:47 CST)
- Re: atoms selection/special characters Axel Kohlmeyer (Fri Nov 29 2013 - 20:43:33 CST)
- Re: atoms selection/special characters Axel Kohlmeyer (Fri Nov 29 2013 - 19:17:08 CST)
- Why are all carbon atoms lumped into C in the Name category in the colors dialog? Andrew DeYoung (Fri Nov 29 2013 - 11:37:41 CST)
- loading pdb files from multiple directories chandrakala gowda (Fri Nov 29 2013 - 04:43:37 CST)
- script to draw lines between labelled atoms david MARTROU (Wed Nov 27 2013 - 07:30:07 CST)
- script to draw lines between labelled atoms david MARTROU (Wed Nov 27 2013 - 05:26:21 CST)
- Centering water molecules Mihaela Drenscko (Tue Nov 26 2013 - 18:26:51 CST)
- Speeding up the VDW drawing method and Tachyon rendering process Andrews, Casey (Tue Nov 26 2013 - 17:53:02 CST)
- vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Robert Wohlhueter (Tue Nov 26 2013 - 16:15:53 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 John Stone (Tue Nov 26 2013 - 17:03:22 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Josh Vermaas (Tue Nov 26 2013 - 18:42:09 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 John Stone (Tue Nov 26 2013 - 19:08:09 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 aramice Malkhasian (Wed Nov 27 2013 - 00:53:30 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Robert Wohlhueter (Wed Nov 27 2013 - 09:12:57 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Robert Wohlhueter (Wed Nov 27 2013 - 10:00:38 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 denilson_at_dqi.ufla.br (Wed Nov 27 2013 - 11:52:28 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Robert Wohlhueter (Sun Dec 08 2013 - 12:00:24 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Josh Vermaas (Sun Dec 08 2013 - 15:01:36 CST)
- AW: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 Norman Geist (Mon Dec 09 2013 - 01:25:59 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 John Stone (Mon Dec 09 2013 - 09:19:01 CST)
- Re: vmd-1.9.1 broken after upgrade to Ubuntu 13.10 John Stone (Tue Nov 26 2013 - 19:08:09 CST)
- RMSD for non-pdb file. Dawid das (Tue Nov 26 2013 - 08:07:48 CST)
- ugly font in linux/xubuntu-13.10 Spitaleri Andrea (Sat Nov 23 2013 - 02:56:18 CST)
- Mapping Gaussian electrostatic potential to electron density with cube files David Slochower (Fri Nov 22 2013 - 12:56:35 CST)
- New empirical force field tools: Release of R.E.D. Server Dev./R.E.D. Python FyD (Fri Nov 22 2013 - 04:18:53 CST)
- pre residues and ligands interaction Ramin Ekhteiari (Thu Nov 21 2013 - 06:48:15 CST)
- windows usage question Thomas C. Bishop (Tue Nov 19 2013 - 12:26:47 CST)
- issues rendering images Tyler Smith (Mon Nov 18 2013 - 18:40:48 CST)
- Ramachandran plot question Thomas Albers (Mon Nov 18 2013 - 11:47:07 CST)
- segmentation fault error when trying to add bonds to Si3N4 crystal in vmd Mehdi Bakhshi (Sat Nov 16 2013 - 23:37:46 CST)
- Error when opening the VMD.exe (Window 8) Thiau Fu Ang (Thu Nov 14 2013 - 22:51:06 CST)
- Re: Error when opening the VMD.exe (Window 8) John Stone (Fri Nov 15 2013 - 17:24:43 CST)
- Re: Error when opening the VMD.exe (Window 8) Thiau Fu Ang (Fri Nov 15 2013 - 23:43:51 CST)
- Migrating a tcl plugin to C Charles McAnany (Sat Nov 16 2013 - 16:14:21 CST)
- Re: Migrating a tcl plugin to C John Stone (Fri Nov 22 2013 - 23:33:07 CST)
- Re: Error when opening the VMD.exe (Window 8) John Stone (Fri Nov 22 2013 - 23:35:36 CST)
- Re: Error when opening the VMD.exe (Window 8) Thiau Fu Ang (Wed Nov 27 2013 - 01:36:58 CST)
- Re: Error when opening the VMD.exe (Window 8) Thiau Fu Ang (Fri Nov 15 2013 - 23:43:51 CST)
- Re: Error when opening the VMD.exe (Window 8) John Stone (Fri Nov 15 2013 - 17:24:43 CST)
- H-atoms placed at the end in PDB file Biswa Ranjan Meher (Thu Nov 14 2013 - 17:15:15 CST)
- BN nanostructure builder Upamanyu Ray (Thu Nov 14 2013 - 15:54:42 CST)
- issue with ppmtompeg movie making Louis Smith (Thu Nov 14 2013 - 11:41:07 CST)
- "measure symmetry" and SymmetryTools fail to find simple symmetry FX (Thu Nov 14 2013 - 10:42:58 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry FX (Sat Nov 16 2013 - 15:58:20 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry FX (Wed Nov 20 2013 - 18:00:44 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry John Stone (Wed Nov 20 2013 - 19:27:21 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry FX (Fri Nov 22 2013 - 07:13:43 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry John Stone (Fri Nov 22 2013 - 14:43:21 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry FX (Wed Nov 20 2013 - 18:00:44 CST)
- Re: "measure symmetry" and SymmetryTools fail to find simple symmetry FX (Sat Nov 16 2013 - 15:58:20 CST)
- Tachyon generation of dat files only Shomesankar Bhunia (Thu Nov 14 2013 - 08:04:40 CST)
- Trace Frame in "Draw Multiple Frames"-Representations Norman Geist (Thu Nov 14 2013 - 04:17:53 CST)
- VMD closes upon loading a gromacs xtc file jayant james (Wed Nov 13 2013 - 20:55:46 CST)
- Re: Depicting hydrogen bonds between water and residues bharat gupta (Mon Nov 11 2013 - 20:24:59 CST)
- periodic images with xyz coordinates Chris Knorowski (Mon Nov 11 2013 - 16:09:50 CST)
- Problems with large solvation boxes John Grime (Mon Nov 11 2013 - 09:04:24 CST)
- creating high quality movie in VMD Shomesankar Bhunia (Sat Nov 09 2013 - 12:57:10 CST)
- Re: [philippebopp@yahoo.com: PME calculations] Jim Phillips (Fri Nov 08 2013 - 12:47:05 CST)
- Running Multiseq Operations in Text-Only Mode Dennis N (Thu Nov 07 2013 - 16:53:42 CST)
- Interactive MD and Tcl Leonhard Henkes (Thu Nov 07 2013 - 15:37:50 CST)
- problem with trr file Alexandre PERRET (Thu Nov 07 2013 - 09:31:15 CST)
- Rmsd Subbusinger N (Thu Nov 07 2013 - 00:25:37 CST)
- installing netpbm Tom Haxton (Wed Nov 06 2013 - 16:34:18 CST)
- Structure summary in output file Anurag Sharma (Wed Nov 06 2013 - 12:11:55 CST)
- PME calculations Philippe Bopp (Wed Nov 06 2013 - 10:50:37 CST)
- ramachandran plot Marzieh Dehghan (Wed Nov 06 2013 - 09:31:15 CST)
- APBS Output file missing or unreadable Ahmet y齦d齬齧 (Wed Nov 06 2013 - 07:05:09 CST)
- Re: APBS Output file missing or unreadable John Stone (Wed Nov 06 2013 - 10:31:14 CST)
- Re: APBS Output file missing or unreadable Ahmet y齦d齬齧 (Thu Nov 07 2013 - 03:11:40 CST)
- Re: APBS Output file missing or unreadable Ahmet y齦d齬齧 (Thu Nov 07 2013 - 07:33:26 CST)
- Re: APBS Output file missing or unreadable Gmail2 (Thu Nov 07 2013 - 21:31:32 CST)
- Re: APBS Output file missing or unreadable Ahmet y齦d齬齧 (Fri Nov 08 2013 - 14:31:42 CST)
- Re: APBS Output file missing or unreadable John Stone (Fri Nov 08 2013 - 14:47:25 CST)
- Re: APBS Output file missing or unreadable Ahmet y齦d齬齧 (Thu Nov 07 2013 - 03:11:40 CST)
- Re: APBS Output file missing or unreadable John Stone (Wed Nov 06 2013 - 10:31:14 CST)
- APBS electrostatics: Output file missing or unreadable. Ahmet y齦d齬齧 (Wed Nov 06 2013 - 05:57:40 CST)
- MM-PBSA calculation Ramin Ekhteiari (Wed Nov 06 2013 - 02:56:43 CST)
- genetaring psf file for HEME ( hemoglobin) Ramin Ekhteiari (Tue Nov 05 2013 - 03:15:07 CST)
- VolMap Occupancy Anne Laustsen (Tue Nov 05 2013 - 03:04:48 CST)
- measuring angles between principal axes through multiple frames Jeremiah Babcock (Mon Nov 04 2013 - 21:55:13 CST)
- generate parameter and topology file Ramin Ekhteiari (Mon Nov 04 2013 - 13:51:29 CST)
- Fwd: Re: Volmap bharat gupta (Mon Nov 04 2013 - 07:47:29 CST)
- Re: Newbie question - Labeling a residue bharat gupta (Mon Nov 04 2013 - 06:07:47 CST)
- Re: Volmap bharat gupta (Mon Nov 04 2013 - 04:49:34 CST)
- The radius of sphere representing an atom shown as vdw sunyeping (Sun Nov 03 2013 - 19:58:02 CST)
- sugar cluster analysis Subrata Paul (Sat Nov 02 2013 - 00:14:14 CDT)
- Problems with external Tachyon Renderer Bryan Roessler (Fri Nov 01 2013 - 21:02:34 CDT)
- How to prevent psfgen from adding atoms Pete Kekenes-Huskey (Fri Nov 01 2013 - 11:23:22 CDT)
- volume analysis in vmd Revthi Sanker (Wed Oct 30 2013 - 03:44:54 CDT)
- fftk optimization of bonded parameters + Error: missing close-bracket AnkiReddy katha (Wed Oct 30 2013 - 03:08:57 CDT)
- Creating custom molecule in VMD scripting Luk峁 Pravda (Tue Oct 29 2013 - 04:40:29 CDT)
- Hydrogen Bond Calculation in VMD for DNA in VMD Himanshu Joshi (Tue Oct 29 2013 - 02:16:11 CDT)
- namdenergy pugin for interaction energy Jana, Suvamay (Mon Oct 28 2013 - 13:02:40 CDT)
- How to address two different geometries for same atom in PDB? Sung M Hong (Fri Oct 25 2013 - 19:17:49 CDT)
- NVIDIA GeForce GT 750M and CUDA Ebert Maximilian (Fri Oct 25 2013 - 15:06:36 CDT)
- isto variable in gofr Lorenzo Gontrani (Thu Oct 24 2013 - 12:35:13 CDT)
- Problem with using FFKT to optimize bonded parameters Shane O Mahony (Wed Oct 23 2013 - 09:29:46 CDT)
- Re: Problem with using FFKT to optimize bonded parameters John Stone (Wed Oct 23 2013 - 09:49:42 CDT)
- Re: Problem with using FFKT to optimize bonded parameters Shane O Mahony (Wed Oct 23 2013 - 10:03:37 CDT)
- Re: Problem with using FFKT to optimize bonded parameters John Stone (Wed Oct 23 2013 - 10:09:02 CDT)
- Re: Problem with using FFKT to optimize bonded parameters Mayne, Christopher G (Wed Oct 23 2013 - 12:38:41 CDT)
- Re: Problem with using FFKT to optimize bonded parameters Mayne, Christopher G (Wed Oct 23 2013 - 16:51:31 CDT)
- Re: Problem with using FFKT to optimize bonded parameters Mayne, Christopher G (Mon Oct 28 2013 - 08:05:37 CDT)
- Re: Problem with using FFKT to optimize bonded parameters Shane O Mahony (Wed Oct 23 2013 - 10:03:37 CDT)
- Re: Problem with using FFKT to optimize bonded parameters John Stone (Wed Oct 23 2013 - 09:49:42 CDT)
- Cluster plug Ramin Ekhteiari (Tue Oct 22 2013 - 15:39:48 CDT)
- loading trajectory Ramin Ekhteiari (Tue Oct 22 2013 - 04:24:26 CDT)
- Re: fftk-charges rodolfo gonzalez (Mon Oct 21 2013 - 01:57:55 CDT)
- fftk-charges rodolfo gonzalez (Sun Oct 20 2013 - 10:00:50 CDT)
- Volarea Himanshu Joshi (Fri Oct 18 2013 - 07:44:40 CDT)
- topotools question Vikas Varshney (Thu Oct 17 2013 - 15:34:42 CDT)
- FFTK, pyrrolidine parametrization bonded parameters- issue with Hessian AnkiReddy katha (Thu Oct 17 2013 - 02:44:02 CDT)
- writepsf method of atomselect objects generates bad atom types Jim Parker (Wed Oct 16 2013 - 13:20:30 CDT)
- how shall we fill in clipped molecules? Albert (Wed Oct 16 2013 - 09:08:10 CDT)
- Dowser-plugin with RNA Behrmann, Elmar (Wed Oct 16 2013 - 07:36:12 CDT)
- visualization of el. potential Petr Jerabek (Mon Oct 14 2013 - 07:44:32 CDT)
- BUG Report -> Draw multiple frames Norman Geist (Fri Oct 11 2013 - 02:41:25 CDT)
- Compiling VMD from source John Grime (Thu Oct 10 2013 - 16:29:04 CDT)
- embed a protein that includes a ligand into the membrane Ramin Ekhteiari (Thu Oct 10 2013 - 12:38:11 CDT)
- namdenergy plugin for Amber simulations Nupur Bansal (Thu Oct 10 2013 - 12:25:00 CDT)
- Installing VMD with PYTHON support A. Gomez-Sicilia (Thu Oct 10 2013 - 07:09:29 CDT)
- VMD graphical representations: a few bugs Tristan Croll (Thu Oct 10 2013 - 00:50:06 CDT)
- psfgen forces to apply terminils to peptide Wanzhi Qiu (Thu Oct 10 2013 - 00:11:40 CDT)
- clipping plane Chris Knorowski (Wed Oct 09 2013 - 14:25:45 CDT)
- create and operate a point in space sunyeping (Wed Oct 09 2013 - 05:15:44 CDT)
- Finding particles that are close Olaf Lenz (Tue Oct 08 2013 - 03:31:45 CDT)
- No timestep available for 'within' search! Nupur Bansal (Mon Oct 07 2013 - 15:28:04 CDT)
- How to calculate tetrahedral order parameter ? Subrata Paul (Sat Oct 05 2013 - 00:07:03 CDT)
- namdenergy fulldirect Prof. Eddie (Fri Oct 04 2013 - 14:02:30 CDT)
- GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) Vani Vemparala (Thu Oct 03 2013 - 23:30:59 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) Axel Kohlmeyer (Fri Oct 04 2013 - 00:33:13 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) John Stone (Mon Oct 07 2013 - 12:07:21 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) Vani Vemparala (Fri Oct 11 2013 - 05:24:09 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) John Stone (Fri Oct 11 2013 - 08:11:48 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) Vani Vemparala (Sat Oct 12 2013 - 22:43:02 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) John Stone (Mon Oct 07 2013 - 12:07:21 CDT)
- Re: GLSL rendering problems on MAC OS 10.8.5 (Intel Graphics Card) Axel Kohlmeyer (Fri Oct 04 2013 - 00:33:13 CDT)
- Measuring angle between two domains? Peterson J (Thu Oct 03 2013 - 10:40:50 CDT)
- Creating very large solvation boxes John Grime (Wed Oct 02 2013 - 16:45:14 CDT)
- convert dcd file to xyz Huong Vu (Wed Oct 02 2013 - 12:21:04 CDT)
- ffTK dihedral fitting question and cmap derivation Daniel Klose (Wed Oct 02 2013 - 03:24:38 CDT)
- custom residue ribbon/cartoon representation issue Do Yong Kim (Tue Oct 01 2013 - 10:59:08 CDT)
- How to diagnose SpaceNavigator not working with VMD? FX (Tue Oct 01 2013 - 07:02:56 CDT)
- Re: 氮蝋: How to show section contour of volumetric data Axel Kohlmeyer (Tue Oct 01 2013 - 02:58:10 CDT)
- How to show section contour of volumetric data CHEN, Chi (Mon Sep 30 2013 - 20:57:24 CDT)
- RE: get resisue names from atom index number sunyeping (Mon Sep 30 2013 - 02:56:04 CDT)
- Force field tool kit - missing close brackets-vmd version 1.9.2 Mohan maruthi sena (Mon Sep 30 2013 - 01:40:41 CDT)
- need your hep about IR Spectrum Plugin Hamid (Sun Sep 29 2013 - 07:26:56 CDT)
- get resisue names from atom index number sunyeping (Sun Sep 29 2013 - 01:33:09 CDT)
- User defined command order Stephanie Teich-McGoldrick (Fri Sep 27 2013 - 19:42:43 CDT)
- Running the ParseFEP Plugin from the Command Line David Huggins (Thu Sep 26 2013 - 11:14:59 CDT)
- rendering Luciano Pinho (Thu Sep 26 2013 - 07:01:49 CDT)
- non-orthorhombic PBCs Jaap Kroes (Wed Sep 25 2013 - 20:14:39 CDT)
- VMD script Marzieh Dehghan (Wed Sep 25 2013 - 07:30:05 CDT)
- Re: Making a trajectory movie from frames. Dawid das (Tue Sep 24 2013 - 11:04:38 CDT)
- Re: HBonds from Desmond Trajectory JC Gumbart (Tue Sep 24 2013 - 10:35:31 CDT)
- Incompatible cubefiles (G09revD.01 cubegen) Ari Turpeinen (Tue Sep 24 2013 - 01:20:18 CDT)
- draw a time bar for a trajectory Davide Mercadante (Mon Sep 23 2013 - 09:53:24 CDT)
- VMD freezing up when left alone Tristan Croll (Sun Sep 22 2013 - 18:34:46 CDT)
- water cluster analysis? Subrata Paul (Sun Sep 22 2013 - 08:50:33 CDT)
- water interaction - force field kit vmd - Mohan maruthi sena (Sat Sep 21 2013 - 14:23:58 CDT)
- Creating very large solvation boxes John Grime (Fri Sep 20 2013 - 12:12:45 CDT)
- to set VMDFORCECPUCOUNT upayan baul (Fri Sep 20 2013 - 09:04:30 CDT)
- ehrenfest dynamics surya narayanan chandrasekaran (Fri Sep 20 2013 - 04:58:06 CDT)
- force field tool kit - error in the step of tutorial charges optimization 2-using vmd1.9.1 Mohan maruthi sena (Thu Sep 19 2013 - 03:38:09 CDT)
- Open VMD from a remote host Gianluca Interlandi (Wed Sep 18 2013 - 13:43:49 CDT)
- Buffer Overflow in "label add" in VMD Christopher MacDermaid (Wed Sep 18 2013 - 10:19:26 CDT)
- remove hydrogen atoms from psf file Yunjie Zhao (Wed Sep 18 2013 - 01:57:38 CDT)
- 鈽 vmd-l@ks.uiuc.edu., Parth left a message for you Hot or Not (Mon Sep 16 2013 - 22:51:51 CDT)
- show_replicas.vmd can't find basesel Francesco Pietra (Mon Sep 16 2013 - 12:49:15 CDT)
- data analysis script help Martin, Erik W (Mon Sep 16 2013 - 11:51:15 CDT)
- Certain combinations of X-server and X-client do not allow VMD to start Clarinet (Mon Sep 16 2013 - 09:40:08 CDT)
- regd arrangment of atom types in psf and par from fftk surya narayanan chandrasekaran (Sun Sep 15 2013 - 13:27:53 CDT)
- calculating total energy rasti_at_ut.ac.ir (Sun Sep 15 2013 - 03:17:42 CDT)
- Hbonds color in VMD Research Jubilant (Fri Sep 13 2013 - 12:38:17 CDT)
- vmd in Debian Johannes Schauer (Thu Sep 12 2013 - 07:18:32 CDT)
- (no subject) Ignacio Irurzun (Wed Sep 11 2013 - 13:50:22 CDT)
- searching for contact atomh sunyeping (Wed Sep 11 2013 - 01:35:13 CDT)
- reg FFTK surya narayanan chandrasekaran (Tue Sep 10 2013 - 14:12:27 CDT)
- Problems uploading new molecule Daniel.Mulvihill (Tue Sep 10 2013 - 10:22:20 CDT)
- monitoring of aromatic interactions? Cecilia Lindgren (Tue Sep 10 2013 - 07:25:46 CDT)
- Problem with VMD's depth cueing and 3DConnexion SpaceNavigator Christian M點ksch (Tue Sep 10 2013 - 07:11:21 CDT)
- tetrahedral order parameter Subrata Paul (Tue Sep 10 2013 - 01:12:51 CDT)
- cispeptide and chirality extrab options Tristan Croll (Mon Sep 09 2013 - 04:15:06 CDT)
- Error: Maximum number of bonds exceeded Orsolya Kar醕sony (Sat Sep 07 2013 - 13:30:21 CDT)
- water cluster size analysis Subrata Paul (Fri Sep 06 2013 - 07:14:47 CDT)
- Autobond Criterion Oliver Stenning (Fri Sep 06 2013 - 03:52:40 CDT)
- Add a gap in my simulation Ali Alizadeh (Thu Sep 05 2013 - 11:40:46 CDT)
- Add a gap in my simulation Ali Alizadeh (Thu Sep 05 2013 - 11:36:54 CDT)
- calculation of angular distribution function Subrata Paul (Thu Sep 05 2013 - 09:32:12 CDT)
- Re: AW: how to enable multiple core rendering? Albert (Thu Sep 05 2013 - 04:02:10 CDT)
- tachyon batch render in parallel Anne Dara Bowen (Wed Sep 04 2013 - 10:51:22 CDT)
- Puckering Parameters mish (Wed Sep 04 2013 - 07:49:44 CDT)
- how to enable multiple core rendering? Albert (Wed Sep 04 2013 - 03:05:15 CDT)
- Increasing number of digits Dawid das (Tue Sep 03 2013 - 09:31:00 CDT)
- Error with show_replicas.vmd Francesco Pietra (Tue Sep 03 2013 - 04:44:55 CDT)
- atom selection from multiple molecules Oliver Schillinger (Mon Sep 02 2013 - 10:17:06 CDT)
- psf file Marzieh Dehghan (Sat Aug 31 2013 - 07:42:26 CDT)
- Question regarding color schemes on crystals and grain boundaries Roger A Larson (Fri Aug 30 2013 - 16:13:13 CDT)
- SangbaeLee: question about pbc wrap Lee, Sangbae (Thu Aug 29 2013 - 13:12:21 CDT)
- Energy contribution analysis eneas_at_usal.es (Wed Aug 28 2013 - 05:42:43 CDT)
- .VMD state file does not load properly Hamed Mortazavi (Wed Aug 28 2013 - 03:43:30 CDT)
- Re: .VMD state file does not load properly Axel Kohlmeyer (Wed Aug 28 2013 - 04:52:20 CDT)
- Re: .VMD state file does not load properly Hamed Mortazavi (Wed Aug 28 2013 - 04:58:32 CDT)
- Re: .VMD state file does not load properly Axel Kohlmeyer (Wed Aug 28 2013 - 05:05:07 CDT)
- Re: .VMD state file does not load properly Hamed Mortazavi (Wed Aug 28 2013 - 07:30:07 CDT)
- Re: .VMD state file does not load properly Axel Kohlmeyer (Wed Aug 28 2013 - 07:45:20 CDT)
- Re: .VMD state file does not load properly Hamed Mortazavi (Wed Aug 28 2013 - 11:03:01 CDT)
- Re: .VMD state file does not load properly Axel Kohlmeyer (Wed Aug 28 2013 - 11:09:28 CDT)
- Re: .VMD state file does not load properly Hamed Mortazavi (Wed Aug 28 2013 - 04:58:32 CDT)
- Re: .VMD state file does not load properly Axel Kohlmeyer (Wed Aug 28 2013 - 04:52:20 CDT)
- making patch rasti_at_ut.ac.ir (Tue Aug 27 2013 - 18:41:06 CDT)
- Installation Problem Vin韈ius Aguiar (Tue Aug 27 2013 - 15:25:15 CDT)
- Problem in buried surface area calculation m r (Tue Aug 27 2013 - 08:35:55 CDT)
- MOLEFACTURE with more than 200 atoms Francesco Pietra (Tue Aug 27 2013 - 05:24:23 CDT)
- compiling VMD -- confused failure Cook, Rich (Mon Aug 26 2013 - 20:15:07 CDT)
- RE: compiling VMD -- confused failure Strahs, Dr. Daniel Bernard (Mon Aug 26 2013 - 22:03:56 CDT)
- Re: compiling VMD -- confused failure John Stone (Tue Aug 27 2013 - 10:29:49 CDT)
- Re: compiling VMD -- confused failure Cook, Rich (Tue Aug 27 2013 - 13:31:05 CDT)
- Re: compiling VMD -- confused failure Axel Kohlmeyer (Tue Aug 27 2013 - 14:20:24 CDT)
- Re: compiling VMD -- confused failure Cook, Rich (Tue Aug 27 2013 - 14:49:26 CDT)
- Re: compiling VMD -- confused failure John Stone (Tue Aug 27 2013 - 15:08:59 CDT)
- Re: compiling VMD -- confused failure Cook, Rich (Tue Aug 27 2013 - 15:29:47 CDT)
- Re: compiling VMD -- confused failure Cook, Rich (Tue Aug 27 2013 - 13:31:05 CDT)
- trouble compiling/setting up VMD Cook, Rich (Mon Aug 26 2013 - 18:44:26 CDT)
- problem with ptch ... rasti (Mon Aug 26 2013 - 15:23:34 CDT)
- Segmentation fault (core dumped) Yubo Fan (Mon Aug 26 2013 - 13:33:57 CDT)
- movie making in vmd chin chun (Mon Aug 26 2013 - 13:29:20 CDT)
- reg FFTK BOND opt surya narayanan chandrasekaran (Mon Aug 26 2013 - 10:16:02 CDT)
- matching part of two models Francesco Pietra (Mon Aug 26 2013 - 01:47:33 CDT)
- problem with building psf file rasti (Sun Aug 25 2013 - 14:52:40 CDT)
- Quality of color scale bar when creating images for publication Holger Scheib (Sat Aug 24 2013 - 02:44:47 CDT)
- VMD script Marzieh Dehghan (Sat Aug 24 2013 - 00:54:37 CDT)
- Computational Biophysics Workshop using NAMD and VMD, November 18-22, 2013, Urbana, Illinois, USA David Brandon (Fri Aug 23 2013 - 14:15:11 CDT)
- generation of psf of phenol Asaf Farhi (Thu Aug 22 2013 - 11:42:14 CDT)
- Re: problem with using parameterization tool of VMD Suresh (Thu Aug 22 2013 - 08:39:06 CDT)
- problem with using parameterization tool of VMD rasti (Thu Aug 22 2013 - 04:07:36 CDT)
- unable to load .xtc files on VMD 1.8.7 Holden Ranz (Wed Aug 21 2013 - 16:18:50 CDT)
- measure gofr for finding hydration shells Martin, Erik W (Mon Aug 19 2013 - 16:54:13 CDT)
- A question with dipwatch.tcl script in VMD Ganesh Kamath (Sat Aug 17 2013 - 14:10:52 CDT)
- how to use measure cluster and clustering plugin of VMD? sunyeping (Fri Aug 16 2013 - 01:39:39 CDT)
- Question related to circular membrane snoze pa (Thu Aug 15 2013 - 16:26:28 CDT)
- STAMP Multiseq Eli Alster (Tue Aug 13 2013 - 11:40:32 CDT)
- Re: Urgent---documents uploaded for you John Stone (Tue Aug 13 2013 - 11:35:55 CDT)
- Vmd visualizing occupancy maps Andrei Tudor (Tue Aug 13 2013 - 10:21:14 CDT)
- dihedral angle distribution Collins Nganou (Tue Aug 13 2013 - 08:36:47 CDT)
- RE : namd-l: AW: Occupancy maps Andrei Tudor (Mon Aug 12 2013 - 10:40:27 CDT)
- nonbond and covalent bond Marzieh Dehghan (Sun Aug 11 2013 - 06:53:38 CDT)
- everything grey with glsl Gordon Wells (Sat Aug 10 2013 - 12:39:42 CDT)
- Fwd: adding calcium atom to the nmr structure Mahendra B Thapa (Fri Aug 09 2013 - 18:38:33 CDT)
- gofr CUDA in script Martin, Erik W (Fri Aug 09 2013 - 17:12:07 CDT)
- Occupancy maps Andrei Tudor (Fri Aug 09 2013 - 11:27:25 CDT)
- cmd line FFK surya narayanan chandrasekaran (Fri Aug 09 2013 - 08:00:12 CDT)
- Fwd: APBS on each frame PANAGIOTA KYRIAKOU (Thu Aug 08 2013 - 14:56:39 CDT)
- Considering special bonds not all of bonds, Ali Alizadeh (Wed Aug 07 2013 - 08:03:40 CDT)
- Re: Considering special bonds not all of bonds, Axel Kohlmeyer (Wed Aug 07 2013 - 09:10:43 CDT)
- Re: Considering special bonds not all of bonds, Ali Alizadeh (Wed Aug 07 2013 - 12:42:56 CDT)
- Re: Considering special bonds not all of bonds, Axel Kohlmeyer (Wed Aug 07 2013 - 13:44:04 CDT)
- Re: Considering special bonds not all of bonds, Josh Vermaas (Wed Aug 07 2013 - 14:28:46 CDT)
- Re: Considering special bonds not all of bonds, Ali Alizadeh (Wed Aug 07 2013 - 15:03:10 CDT)
- Re: Considering special bonds not all of bonds, Josh Vermaas (Wed Aug 07 2013 - 15:15:45 CDT)
- Re: Considering special bonds not all of bonds, Ali Alizadeh (Wed Aug 07 2013 - 16:07:29 CDT)
- Re: Considering special bonds not all of bonds, Ali Alizadeh (Wed Aug 07 2013 - 12:42:56 CDT)
- Re: Considering special bonds not all of bonds, Axel Kohlmeyer (Wed Aug 07 2013 - 09:10:43 CDT)
- VMD Mutate to nonstandard amino acid residue George Omolloh (Tue Aug 06 2013 - 15:06:26 CDT)
- NAMDGUI Li, Haiqing (Tue Aug 06 2013 - 13:29:54 CDT)
- about the wrap and unwrap by pbc plugin Kong, Ren (Tue Aug 06 2013 - 11:06:41 CDT)
- Loading new molecule without changing view? Marc van der Kamp (Tue Aug 06 2013 - 04:49:07 CDT)
- extracting grid points from an isosurface Georgios Gerogiokas (Tue Aug 06 2013 - 03:44:15 CDT)
- Animations using VMD: Sumit Kumar (Mon Aug 05 2013 - 19:00:03 CDT)
- Regarding FFTK option surya narayanan chandrasekaran (Mon Aug 05 2013 - 12:06:32 CDT)
- Re: X11 on Mac 10.8 Valentina Erastova (Mon Aug 05 2013 - 09:50:05 CDT)
- Display CCP4 density map around selection only Jim (Sun Aug 04 2013 - 18:51:08 CDT)
- Bond error Benjamin Cowen (Fri Aug 02 2013 - 15:25:37 CDT)
- Segmentation fault (core dumped) Hailin Huang (Thu Aug 01 2013 - 15:03:59 CDT)
- Area per lipid for tubular micellae Vita Duka (Thu Aug 01 2013 - 08:10:10 CDT)
- BUG in VMD dx reader plugin Norman Geist (Thu Aug 01 2013 - 03:43:07 CDT)
- Re: Problems when using specden package in VMD Axel Kohlmeyer (Thu Aug 01 2013 - 01:59:16 CDT)
- Problems when using specden package in VMD Mingchao Wang (Thu Aug 01 2013 - 00:19:16 CDT)
- bypassing MolFrac step surya narayanan chandrasekaran (Wed Jul 31 2013 - 05:50:57 CDT)
- Leap Motion Olaf Lenz (Tue Jul 30 2013 - 03:19:38 CDT)
- Replica exchange, colvars & harmonic restraints Andrei Tudor (Mon Jul 29 2013 - 11:14:01 CDT)
- problems wrapping waters using PBC tools Markus Dahlgren (Mon Jul 29 2013 - 10:02:46 CDT)
- Re: How to import .lammpstrj files using LAMMPS plugin Axel Kohlmeyer (Mon Jul 29 2013 - 01:17:40 CDT)
- How to import .lammpstrj files using LAMMPS plugin Mingchao Wang (Mon Jul 29 2013 - 00:13:26 CDT)
- SOLVED Fwd: Merge structures coordinate failure Francesco Pietra (Sun Jul 28 2013 - 05:06:14 CDT)
- Error in merging manipulated graphene sheet (generate with VMD and manipulate with Hyperchem) with protein v.satarifard (Sun Jul 28 2013 - 03:22:20 CDT)
- remove vmd in ubuntu v.satarifard (Sun Jul 28 2013 - 02:52:17 CDT)
- Problem with autoionize plugin and long atomtypes Thomas Albers (Sat Jul 27 2013 - 16:37:19 CDT)
- RE: Problem with autoionize plugin and long atomtypes Tristan Croll (Sun Jul 28 2013 - 18:54:19 CDT)
- Re: Problem with autoionize plugin and long atomtypes Thomas Albers (Mon Jul 29 2013 - 10:47:11 CDT)
- Re: Problem with autoionize plugin and long atomtypes Josh Vermaas (Mon Jul 29 2013 - 12:35:01 CDT)
- Re: Problem with autoionize plugin and long atomtypes Thomas Albers (Mon Jul 29 2013 - 15:22:49 CDT)
- Re: Problem with autoionize plugin and long atomtypes John Stone (Wed Aug 07 2013 - 13:48:21 CDT)
- Re: Problem with autoionize plugin and long atomtypes Thomas Albers (Wed Aug 07 2013 - 14:24:22 CDT)
- RE: Problem with autoionize plugin and long atomtypes Tristan Croll (Mon Aug 19 2013 - 19:53:11 CDT)
- Re: Problem with autoionize plugin and long atomtypes Thomas Albers (Mon Jul 29 2013 - 10:47:11 CDT)
- RE: Problem with autoionize plugin and long atomtypes Tristan Croll (Sun Jul 28 2013 - 18:54:19 CDT)
- Merge structures coordinate failure Francesco Pietra (Sat Jul 27 2013 - 13:04:11 CDT)
- VMD with Python on MacOSX 10.7.5 Payne, Christina M (Fri Jul 26 2013 - 11:52:24 CDT)
- Re: autoionize error in vmd Revthi Sanker (Fri Jul 26 2013 - 09:53:30 CDT)
- FFTK question regarding dihedral fitting Daniel Klose (Fri Jul 26 2013 - 01:29:14 CDT)
- new VMD plugin for reading LAMMPS dumps with variable number of atoms Axel Kohlmeyer (Thu Jul 25 2013 - 07:43:34 CDT)
- Muhammad Radifar Muhammad Radifar (Wed Jul 24 2013 - 11:58:37 CDT)
- FFTK partial charges against water Francesco Pietra (Wed Jul 24 2013 - 08:32:42 CDT)
- catdcd a vmd extension? R. Charbel MAROUN (Tue Jul 23 2013 - 12:09:30 CDT)
- catdcd -first R. Charbel MAROUN (Tue Jul 23 2013 - 09:30:01 CDT)
- Mutator plugin error Thomas Christott (Tue Jul 23 2013 - 05:54:51 CDT)
- FFTK scan torsions aromatics Francesco Pietra (Tue Jul 23 2013 - 02:14:14 CDT)
- Fwd: FFTK scan torsions aromatics Francesco Pietra (Tue Jul 23 2013 - 03:12:05 CDT)
- Re: FFTK scan torsions aromatics Christian Jorgensen (Fri Dec 06 2013 - 11:12:48 CST)
- FFTK scan torsions MP2 vs RHF Francesco Pietra (Mon Jul 22 2013 - 11:24:55 CDT)
- regarding FFTK improper angle surya narayanan chandrasekaran (Mon Jul 22 2013 - 11:08:37 CDT)
- unusual bond warning during psf building melis.yildirim_at_boun.edu.tr (Mon Jul 22 2013 - 09:19:51 CDT)
- Re: density of system Axel Kohlmeyer (Sun Jul 21 2013 - 16:08:49 CDT)
- density of system chin chun (Sun Jul 21 2013 - 14:46:30 CDT)
- Dynamic number of atoms visualization amit kunte (Sat Jul 20 2013 - 05:36:19 CDT)
- simulating proteins with missing resdiues melis.yildirim_at_boun.edu.tr (Fri Jul 19 2013 - 11:01:49 CDT)
- charge re-optimization Darre Castell, Leonardo (Fri Jul 19 2013 - 08:10:47 CDT)
- combine .pdb files to make movie Sarah MohammadiNejad (Fri Jul 19 2013 - 06:35:57 CDT)
- CatDCD windows binaries Axel Kohlmeyer (Fri Jul 19 2013 - 04:56:00 CDT)
- How can I easily show ball and stick residues across all molecules and representations? Dennis N Bromley (Thu Jul 18 2013 - 17:07:51 CDT)
- FFTK about Water Interaction Francesco Pietra (Thu Jul 18 2013 - 11:18:21 CDT)
- VTF Bailey, Steven (Thu Jul 18 2013 - 08:35:28 CDT)
- Re: VTF Olaf Lenz (Thu Jul 18 2013 - 10:10:48 CDT)
- Re: VTF Olaf Lenz (Mon Feb 03 2014 - 12:09:13 CST)
- Re: VTF Ming-Tsung Lee (Mon Feb 03 2014 - 13:01:52 CST)
- Re: Re: VTF Axel Kohlmeyer (Mon Feb 03 2014 - 13:21:47 CST)
- Re: Re: VTF Olaf Lenz (Tue Feb 04 2014 - 08:32:49 CST)
- Re: Re: VTF Ming-Tsung Lee (Tue Feb 04 2014 - 10:08:26 CST)
- Re: Re: VTF Olaf Lenz (Tue Feb 04 2014 - 10:22:15 CST)
- Re: Re: VTF John Stone (Tue Feb 04 2014 - 10:21:58 CST)
- Re: Re: VTF Olaf Lenz (Tue Feb 04 2014 - 10:27:57 CST)
- Re: Re: VTF Axel Kohlmeyer (Tue Feb 04 2014 - 10:29:13 CST)
- Re: Re: VTF John Stone (Tue Feb 04 2014 - 10:33:04 CST)
- Re: Re: VTF John Stone (Tue Feb 04 2014 - 11:01:47 CST)
- Re: Re: VTF John Stone (Mon Feb 03 2014 - 16:36:47 CST)
- WG: VMD mismatch between CUDA runtime and GPU driver Greipel.Joachim_at_mh-hannover.de (Thu Jul 18 2013 - 02:24:18 CDT)
- VMD mismatch between CUDA runtime and GPU driver Greipel.Joachim_at_mh-hannover.de (Thu Jul 18 2013 - 02:01:31 CDT)
- charmm36 and charmm27 together with namd? Francesco Pietra (Thu Jul 18 2013 - 01:54:35 CDT)
- RE: Re: problems about atoms display in certain region sunnytov (Thu Jul 18 2013 - 01:07:21 CDT)
- Re: problems about atoms display in certain region Axel Kohlmeyer (Wed Jul 17 2013 - 23:04:53 CDT)
- FFTK and CGenFF Francesco Pietra (Wed Jul 17 2013 - 10:14:04 CDT)
- script for size distribution niladri patra (Tue Jul 16 2013 - 10:53:29 CDT)
- Center a trajectory Andrei Tudor (Tue Jul 16 2013 - 09:18:15 CDT)
- Combine volmap occupancy maps Andrei Tudor (Mon Jul 15 2013 - 14:44:54 CDT)
- logging in vmd Verwandlung Die (Sun Jul 14 2013 - 22:32:40 CDT)
- membrane in xplor format Francesco Pietra (Fri Jul 12 2013 - 05:14:50 CDT)
- autoionization error in VMD melis.yildirim_at_boun.edu.tr (Fri Jul 12 2013 - 03:21:25 CDT)
- How to change resolution default setting? 张相雄 (Thu Jul 11 2013 - 09:02:35 CDT)
- Movies in VMD Hunter Brown (Wed Jul 10 2013 - 13:22:41 CDT)
- Error during Water interaction data generation using gaussian following ffTK screencast Peterson J (Wed Jul 10 2013 - 12:03:45 CDT)
- Water interaction generation step in ffTK Peterson J (Tue Jul 09 2013 - 14:59:47 CDT)
- manipulation of atomselections Bennion, Brian (Fri Jul 05 2013 - 15:54:16 CDT)
- center of mass Jorgen Simonsen (Fri Jul 05 2013 - 11:25:55 CDT)
- two Molecules in one pdb and psf Christian Wohlschlager (Fri Jul 05 2013 - 04:37:21 CDT)
- dihedrals in ffTK Darre Castell, Leonardo (Thu Jul 04 2013 - 06:56:16 CDT)
- FW: Dynamical network analysis-NetworkView Ciara McCormack (Thu Jul 04 2013 - 04:17:14 CDT)
- Trouble with the mergepdbs.tcl script Hunter Brown (Wed Jul 03 2013 - 09:56:51 CDT)
- Merge Structur Christian Wohlschlager (Wed Jul 03 2013 - 08:52:00 CDT)
- atom indices from x y z coordinates Gurunath Katagi (Wed Jul 03 2013 - 03:00:15 CDT)
- Macromolecule? Benjamin Cowen (Tue Jul 02 2013 - 18:38:55 CDT)
- Announcement about Faraday Discussion on Molecular Simulation and Visualization - call for abstracts deadline 22 July 2013 Marc Baaden (Tue Jul 02 2013 - 15:00:02 CDT)
- secondary structure works on linux, it doesn't work on Mac in certain structures Juan Felipe Ortiz (Tue Jul 02 2013 - 11:24:06 CDT)
- reg interaction energy surya narayanan chandrasekaran (Tue Jul 02 2013 - 11:08:33 CDT)
- Use AMBER files in CG-builder Nathaniel Eagan (Mon Jul 01 2013 - 16:21:14 CDT)
- Box boundaries displaying Michele Formica (Mon Jul 01 2013 - 10:21:54 CDT)
- VMD 1.9.1 namdenergy plugin problem with GPU acceleration Alessandro Mascioni (Sun Jun 30 2013 - 15:42:38 CDT)
- 3d pdf Roberto Gaspari (Sun Jun 30 2013 - 14:47:25 CDT)
- auto ionise error Revthi Sanker (Sat Jun 29 2013 - 07:53:03 CDT)
- VMD shows there's a H-BOND between Carbon and Hydrogen? Hovakim Grabski (Sat Jun 29 2013 - 05:47:02 CDT)
- Reusing the psf file Peterson J (Fri Jun 28 2013 - 22:06:56 CDT)
- setting bonds so that they are saved in DMS format output Christopher Neale (Fri Jun 28 2013 - 21:26:40 CDT)
- Coarse Graining Cholesterol with VMD's cg builder Christopher Gutnajer (Fri Jun 28 2013 - 15:12:48 CDT)
- ureybradley and impropers in ffTK Darre Castell, Leonardo (Fri Jun 28 2013 - 11:52:21 CDT)
- Change in color of residue rama david (Fri Jun 28 2013 - 09:59:29 CDT)
- calculating distance between center of mass of two set of residues Peterson J (Thu Jun 27 2013 - 13:06:44 CDT)
- Visualise variable atoms amit kunte (Thu Jun 27 2013 - 01:34:09 CDT)
- variable atoms visualization amit kunte (Wed Jun 26 2013 - 23:28:17 CDT)
- can't read "::vmd_pick_event": no such variable Alex Richards (Wed Jun 26 2013 - 11:13:33 CDT)
- Problems with MDFF tutorial Catalin Buiu (Tue Jun 25 2013 - 16:27:02 CDT)
- load speed of dcds Thomas C. Bishop (Tue Jun 25 2013 - 12:22:23 CDT)
- question concerning measure gofr Philippe Bopp (Tue Jun 25 2013 - 11:14:51 CDT)
- Desmond Trajectory Alignment for Timeline Analysis Pedley, Anthony M (Tue Jun 25 2013 - 09:15:33 CDT)
- How to save 2 gro file in 1 gro file? leila karami (Sun Jun 23 2013 - 09:34:10 CDT)
- How to save 2 gro file in 1 gro file? leila karami (Sun Jun 23 2013 - 08:08:12 CDT)
- Query regarding getting intial configuration of laponite clay!! Siddharth Subramanian (Sat Jun 22 2013 - 12:19:33 CDT)
- Re: multiseq Ramin Ekhteiari (Fri Jun 21 2013 - 08:24:23 CDT)
- multiseq Ramin Ekhteiari (Fri Jun 21 2013 - 03:13:06 CDT)
- Fw: PSF not generating flavio seixas (Thu Jun 20 2013 - 11:25:52 CDT)
- Basic question about improper Wenhao Liu (Tue Jun 18 2013 - 18:29:38 CDT)
- fftk Opt. Charges Prof. Eddie (Tue Jun 18 2013 - 16:47:25 CDT)
- RE: fftk Opt. Charges Bennion, Brian (Tue Jun 18 2013 - 17:47:56 CDT)
- Re: fftk Opt. Charges Prof. Eddie (Wed Jun 19 2013 - 08:50:47 CDT)
- Re: fftk Opt. Charges Mayne, Christopher G (Wed Jun 19 2013 - 10:53:43 CDT)
- Re: fftk Opt. Charges Prof. Eddie (Wed Jun 19 2013 - 13:16:20 CDT)
- Re: fftk Opt. Charges Prof. Eddie (Thu Jun 27 2013 - 14:37:15 CDT)
- RE: fftk Opt. Charges Bennion, Brian (Thu Jun 27 2013 - 14:53:35 CDT)
- RE: fftk Opt. Charges Bennion, Brian (Thu Jun 27 2013 - 15:56:52 CDT)
- Re: fftk Opt. Charges Prof. Eddie (Thu Jun 27 2013 - 16:12:27 CDT)
- Re: fftk Opt. Charges Prof. Eddie (Wed Jun 19 2013 - 08:50:47 CDT)
- RE: fftk Opt. Charges Bennion, Brian (Tue Jun 18 2013 - 17:47:56 CDT)
- PSF not generating Nathan Li (Tue Jun 18 2013 - 12:53:27 CDT)
- AutoIMD with Periodic Boundary Conditions Robert Johnson (Tue Jun 18 2013 - 11:43:13 CDT)
- Atom Selection & List Generation Alex Richards (Mon Jun 17 2013 - 16:32:12 CDT)
- Generating .top and .crd using VMD manikanthan bhavaraju (Mon Jun 17 2013 - 10:18:25 CDT)
- periodic boxes Jonathan Phillips (Fri Jun 14 2013 - 16:53:33 CDT)
- graphics: not enough parameters Chavent Mathieu (Fri Jun 14 2013 - 12:56:24 CDT)
- namdenergy non-bonded question Prof. Eddie (Fri Jun 14 2013 - 11:45:14 CDT)
- How to read the output of ParseFEP Ramie (Fri Jun 14 2013 - 07:58:04 CDT)
- Query regarding merging structures in vmd!! Siddharth Subramanian (Fri Jun 14 2013 - 04:52:55 CDT)
- variable particle size Solen (Thu Jun 13 2013 - 23:01:19 CDT)
- Problem with writepsf and CGenFF long atomtypes Alexandre Suman de Araujo (Thu Jun 13 2013 - 12:57:30 CDT)
- error: too many open files Ludovic (Wed Jun 12 2013 - 19:14:35 CDT)
- protein order parameter Thomas Schmidt (Wed Jun 12 2013 - 15:39:01 CDT)
- (no subject) Thomas Schmidt (Wed Jun 12 2013 - 15:37:37 CDT)
- Workshop on GPU Programming for Molecular Modeling, August 2-4, 2013, in Urbana, Illinois David Brandon (Wed Jun 12 2013 - 11:03:08 CDT)
- Re: protein schematic representaton francesco oteri (Wed Jun 12 2013 - 09:24:32 CDT)
- multiple vector in smd yp sun (Mon Jun 10 2013 - 22:34:44 CDT)
- protein schematic representaton francesco oteri (Mon Jun 10 2013 - 13:23:17 CDT)
- best method for showing metal nanoparticle and protein in vmd hamid mosaddeghi (Fri Jun 07 2013 - 04:24:15 CDT)
- charge exceed the range between Low bound and High bound in ffTK charge optimization Wenhao Liu (Thu Jun 06 2013 - 21:58:35 CDT)
- RE: charge exceed the range between Low bound and High bound in ffTK charge optimization JC Gumbart (Fri Jun 07 2013 - 07:40:49 CDT)
- Calculation of no. of turns, pitch in DNA Anurag Sharma (Wed Jun 05 2013 - 17:04:45 CDT)
- Dihedrals Ali Alizadeh (Wed Jun 05 2013 - 07:48:14 CDT)
- Change atom color dynamically. amit kunte (Wed Jun 05 2013 - 02:12:49 CDT)
- Compare "measure rgyr" to SAXS Martin, Erik W (Tue Jun 04 2013 - 14:37:28 CDT)
- Re: molfracture force field Prof. Eddie (Tue Jun 04 2013 - 07:12:11 CDT)
- Which Linux distribution works best with Quadro cards? Alexander Balaeff (Tue Jun 04 2013 - 01:39:26 CDT)
- Bond Labels - Issue with Rendering Peter Murphy (Mon Jun 03 2013 - 12:12:04 CDT)
- Showing bonds created with"bond" command of LEaP Francesco Pietra (Mon Jun 03 2013 - 09:42:28 CDT)
- Calculation of VAF using signalproc plugin Mingchao Wang (Mon Jun 03 2013 - 00:33:25 CDT)
- not work "selection atoms" for trajectory of dl_poly hamid mosaddeghi (Sat Jun 01 2013 - 09:55:06 CDT)
- How to place the origin point at the position of an atom? WuChaofu (Fri May 31 2013 - 02:14:00 CDT)
- save waters around ligand trajectory updated Laura Lopez Munoz (Fri May 31 2013 - 01:17:12 CDT)
- What is revbonds in cgtools.tcl? WuChaofu (Thu May 30 2013 - 08:16:44 CDT)
- molfracture force field Prof. Eddie (Wed May 29 2013 - 15:32:57 CDT)
- MDFF difficulties with mdff sim command Martin Jones (Wed May 29 2013 - 09:24:44 CDT)
- autopsf Prof. Eddie (Tue May 28 2013 - 14:43:16 CDT)
- file format of VMD Reza Md. (Tue May 28 2013 - 09:19:19 CDT)
- regarding FFTK surya narayanan chandrasekaran (Mon May 27 2013 - 11:02:39 CDT)
- RE: regarding FFTK Bennion, Brian (Tue May 28 2013 - 11:09:20 CDT)
- Re: regarding FFTK Mayne, Christopher G (Tue May 28 2013 - 12:13:33 CDT)
- Re: regarding FFTK surya narayanan chandrasekaran (Thu May 30 2013 - 06:11:28 CDT)
- Fwd: regarding FFTK surya narayanan chandrasekaran (Thu May 30 2013 - 09:26:58 CDT)
- Re: regarding FFTK Mayne, Christopher G (Thu May 30 2013 - 10:17:42 CDT)
- Re: regarding FFTK surya narayanan chandrasekaran (Thu May 30 2013 - 13:20:02 CDT)
- Re: regarding FFTK Mayne, Christopher G (Thu May 30 2013 - 13:34:35 CDT)
- Re: regarding FFTK JC Gumbart (Thu May 30 2013 - 13:30:07 CDT)
- Re: regarding FFTK Mayne, Christopher G (Thu May 30 2013 - 13:56:35 CDT)
- Re: regarding FFTK surya narayanan chandrasekaran (Thu May 30 2013 - 14:43:57 CDT)
- Re: regarding FFTK Mayne, Christopher G (Thu May 30 2013 - 15:46:28 CDT)
- Re: regarding FFTK surya narayanan chandrasekaran (Mon Jun 10 2013 - 15:55:19 CDT)
- Re: regarding FFTK Mayne, Christopher G (Mon Jun 10 2013 - 16:11:19 CDT)
- Re: regarding FFTK Mayne, Christopher G (Mon Jun 10 2013 - 17:32:22 CDT)
- Re: regarding FFTK Mayne, Christopher G (Tue Jun 11 2013 - 08:42:01 CDT)
- Re: regarding FFTK Mayne, Christopher G (Tue Jun 11 2013 - 15:32:40 CDT)
- Re: regarding FFTK surya narayanan chandrasekaran (Thu May 30 2013 - 06:11:28 CDT)
- How to characterize and change the tacticity of polymer chain WuChaofu (Mon May 27 2013 - 04:44:12 CDT)
- why does VMD load dcd file so slowly? yp sun (Sat May 25 2013 - 20:40:46 CDT)
- VMD crashes on opening large cube files VandeVondele Joost (Sat May 25 2013 - 11:38:14 CDT)
- RE: MDFF difficulties with mdff sim command Martin Jones (Fri May 24 2013 - 14:02:50 CDT)
- MDFF difficulties with mdff sim command Martin Jones (Fri May 24 2013 - 12:55:05 CDT)
- Remove overlapping solvent molecules Michele Formica (Thu May 23 2013 - 07:40:44 CDT)
- starting vmd in current working directory Bennion, Brian (Wed May 22 2013 - 11:59:28 CDT)
- Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Mon May 20 2013 - 13:03:57 CDT)
- RE: Suggestions on parameterizing a ligand to simulate in NAMD Bennion, Brian (Mon May 20 2013 - 14:15:26 CDT)
- Re: Suggestions on parameterizing a ligand to simulate in NAMD Jiawei Xu (Mon May 20 2013 - 14:11:50 CDT)
- Re: Suggestions on parameterizing a ligand to simulate in NAMD Mayne, Christopher G (Mon May 20 2013 - 14:32:42 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Mon May 20 2013 - 23:48:48 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Mayne, Christopher G (Tue May 21 2013 - 07:59:25 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Tue May 21 2013 - 11:35:01 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Mayne, Christopher G (Tue May 21 2013 - 13:05:04 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Tue May 21 2013 - 14:24:51 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Mayne, Christopher G (Tue May 21 2013 - 15:46:07 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Tue May 21 2013 - 16:38:07 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Mayne, Christopher G (Tue May 21 2013 - 16:55:01 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Thu Jun 13 2013 - 11:59:28 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Mayne, Christopher G (Thu Jun 13 2013 - 15:55:52 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Thu Jun 13 2013 - 17:08:29 CDT)
- Re: namd-l: Re: Suggestions on parameterizing a ligand to simulate in NAMD Peterson J (Mon May 20 2013 - 23:48:48 CDT)
- Obtain solvent-accessible surface vertices Filip Persson (Mon May 20 2013 - 10:47:47 CDT)
- please remove me from the list Denis Davydov (Fri May 17 2013 - 04:40:56 CDT)
- Formatting labels in script Pawe艂 K臋dzierski (Fri May 17 2013 - 04:17:59 CDT)
- dynamical network analysis on GROMACS trajectories Payman Pirzadeh (Thu May 16 2013 - 14:46:23 CDT)
- building VMD with opnempi support Vlad Cojocaru (Thu May 16 2013 - 11:00:43 CDT)
- error in merging two structures Anurag Sharma (Wed May 15 2013 - 18:38:58 CDT)
- error in merging two structures Anurag Sharma (Mon May 20 2013 - 12:38:18 CDT)
- Re: error in merging two structures John Stone (Wed May 22 2013 - 10:24:02 CDT)
- Re: error in merging two structures John Stone (Wed Jun 12 2013 - 23:19:30 CDT)
- RE: error in merging two structures Anurag Sharma (Thu Jun 13 2013 - 09:21:43 CDT)
- RE: error in merging two structures Bennion, Brian (Thu Jun 13 2013 - 10:32:34 CDT)
- RE: error in merging two structures Anurag Sharma (Thu Jun 13 2013 - 12:18:17 CDT)
- RE: error in merging two structures Bennion, Brian (Thu Jun 13 2013 - 12:25:34 CDT)
- RE: error in merging two structures Anurag Sharma (Thu Jun 13 2013 - 17:26:59 CDT)
- Re: error in merging two structures Subbarao Kanchi (Thu Jun 13 2013 - 11:24:21 CDT)
- RE: error in merging two structures Anurag Sharma (Thu Jun 13 2013 - 12:24:09 CDT)
- Re: error in merging two structures John Stone (Wed May 22 2013 - 10:24:02 CDT)
- error in merging two structures Anurag Sharma (Mon May 20 2013 - 12:38:18 CDT)
- paratool and g09 Prof. Eddie (Wed May 15 2013 - 16:13:29 CDT)
- Error when compiling plugins: tcl.h not found Daniel L茅vesque (Tue May 14 2013 - 11:37:47 CDT)
- Re: Error when compiling plugins: tcl.h not found Axel Kohlmeyer (Tue May 14 2013 - 12:48:29 CDT)
- Re: Error when compiling plugins: tcl.h not found Josh Vermaas (Tue May 14 2013 - 12:38:42 CDT)
- dynamic cross correlation map Prof. Eddie (Tue May 14 2013 - 11:12:26 CDT)
- visualizing dynamic charge Dave Schall (Mon May 13 2013 - 15:20:24 CDT)
- hide/display VMD graphics primitives Chavent Mathieu (Fri May 10 2013 - 12:09:52 CDT)
- molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 08:30:13 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Axel Kohlmeyer (Thu May 09 2013 - 09:21:27 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:32:35 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Axel Kohlmeyer (Thu May 09 2013 - 10:41:28 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:43:20 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" John Stone (Thu May 09 2013 - 10:48:49 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:59:03 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Christopher MacDermaid (Thu May 09 2013 - 10:32:35 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Mayne, Christopher G (Thu May 09 2013 - 09:52:08 CDT)
- Re: molinfo top get filename, dialogue vs. "mol new" Axel Kohlmeyer (Thu May 09 2013 - 09:21:27 CDT)
- convert pdb file from angstorm to nm units Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 22:47:24 CDT)
- convert pdb file from angstorm to nm units Nandigana, Vishal Venkata Raghave (Tue May 07 2013 - 13:55:18 CDT)
- ABF tutorial: Methane-Hydration water going -> Water in gas phase? Maximilian Ebert (Fri May 03 2013 - 21:13:38 CDT)
- problem/NVIDIA 3D vision/VMD/Windows 7 Pro 64-bit/GeForce GTX680 Ming-Tsung Lee (Fri May 03 2013 - 20:59:37 CDT)
- ABF tutorial: Methane-Hydration water going -> Water in gas phase? Maximilian Ebert (Fri May 03 2013 - 20:49:33 CDT)
- Question about FFTK charge optimization procedure to CGENFF modeling Alexandre Suman de Araujo (Fri May 03 2013 - 15:40:41 CDT)
- Re: Fwd: VMD Crash with Ubuntu 12.04 LTS and NVidia 310.44 driver. DENILSON FERREIRA DE OLIVEIRA (Fri May 03 2013 - 13:36:24 CDT)
- Step 6 ffTK ligand calculation. aravind chandrasekaran (Thu May 02 2013 - 10:26:06 CDT)
- VMD Crash with Ubuntu 12.04 LTS and NVidia 310.44 driver. Aric Newton (Thu May 02 2013 - 06:17:49 CDT)
- Unable to find bond parameters for NOH P4 (ATOMS 292 294) 肖富贵 (Thu May 02 2013 - 04:14:35 CDT)
- how do I show spheres that are rotating around their centre Das, Debasish (Wed May 01 2013 - 17:33:38 CDT)
- cannot ionize coarse-grained system 肖富贵 (Wed May 01 2013 - 14:25:37 CDT)
- Tiled display setup John Hodrien (Tue Apr 30 2013 - 03:08:06 CDT)
- OpenGL problem Avisek Das (Mon Apr 29 2013 - 11:04:36 CDT)
- FFTK - Step -3 missing log file. aravind chandrasekaran (Sun Apr 28 2013 - 10:54:59 CDT)
- water in crystal yp sun (Sat Apr 27 2013 - 19:43:24 CDT)
- How to get improper dihedral list Wenhao Liu (Sat Apr 27 2013 - 15:39:56 CDT)
- "transparent" material not working Martin, Erik W (Fri Apr 26 2013 - 15:57:12 CDT)
- number of atoms changes on loading .cms file Nidhi Jatana (Fri Apr 26 2013 - 02:04:09 CDT)
- Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 13:13:57 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 14:51:15 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 17:15:20 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 17:49:44 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 17:53:44 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 19:02:36 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 19:12:09 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 19:07:30 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 17:39:51 CDT)
- Re: Detecting Custom "h-bonds" Salomon Turgman Cohen (Thu Apr 25 2013 - 17:15:20 CDT)
- Re: Detecting Custom "h-bonds" Josh Vermaas (Thu Apr 25 2013 - 14:51:15 CDT)
- (no subject) Lorenzo Gontrani (Wed Apr 24 2013 - 16:51:59 CDT)
- criteria for hydrogen bonds. Kristine Manibog (Tue Apr 23 2013 - 19:39:17 CDT)
- VMD: Mutator --> ASP to ASN problems Peter Murphy (Tue Apr 23 2013 - 13:40:57 CDT)
- Re: dock LW (Tue Apr 23 2013 - 03:40:47 CDT)
- problem in saving the output Sindrila Dutta Banik (Tue Apr 23 2013 - 02:22:13 CDT)
- mol options first and last Andrew Petersen (Mon Apr 22 2013 - 13:59:06 CDT)
- problem of pbc command Albert (Mon Apr 22 2013 - 01:39:37 CDT)
- how to calculate binding free energy and contribution of individual residue? yp sun (Sun Apr 21 2013 - 21:40:19 CDT)
- HEME acting unplanar Yarrow Madrona (Sun Apr 21 2013 - 17:49:21 CDT)
- how to write pbc option in python? Albert (Sun Apr 21 2013 - 11:50:19 CDT)
- ellipsoidal particles farrokh yousefi (Sun Apr 21 2013 - 10:33:18 CDT)
- (no subject) Rob (Sun Apr 21 2013 - 06:10:17 CDT)
- (no subject) Ganesh Shahane (Sun Apr 21 2013 - 02:10:12 CDT)
- VMD crashes KDE at startup Felix Rausch (Fri Apr 19 2013 - 06:41:40 CDT)
- pdb -arge magnitude coordinates Mohan maruthi sena (Fri Apr 19 2013 - 00:34:56 CDT)
- how vmd return actual vector for given atom Steven Neumann (Thu Apr 18 2013 - 10:36:50 CDT)
- Computing the transformation_matrix for best fit alignment of structures LW (Wed Apr 17 2013 - 22:54:18 CDT)
- No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 14:54:35 CDT)
- Re: No bonds in the generated psf file Josh Vermaas (Wed Apr 17 2013 - 17:34:14 CDT)
- Re: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 17:52:16 CDT)
- Re: No bonds in the generated psf file Josh Vermaas (Wed Apr 17 2013 - 18:32:56 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 19:37:42 CDT)
- Re: No bonds in the generated psf file John Stone (Wed Apr 17 2013 - 20:48:35 CDT)
- Re: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 20:59:28 CDT)
- Re: No bonds in the generated psf file John Stone (Wed Apr 17 2013 - 21:07:42 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 21:34:36 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 21:25:30 CDT)
- Re: No bonds in the generated psf file John Stone (Wed Apr 17 2013 - 21:51:14 CDT)
- RE: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 23:33:21 CDT)
- Re: No bonds in the generated psf file Anurag Sharma (Wed Apr 17 2013 - 17:52:16 CDT)
- Re: No bonds in the generated psf file Josh Vermaas (Wed Apr 17 2013 - 17:34:14 CDT)
- FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 12:51:08 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Mayne, Christopher G (Wed Apr 17 2013 - 14:11:45 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Jeffrey Potoff (Wed Apr 17 2013 - 15:16:06 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 16:54:08 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Josh Vermaas (Wed Apr 17 2013 - 17:57:01 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 18:48:41 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Mayne, Christopher G (Wed Apr 17 2013 - 22:18:05 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Thu Apr 18 2013 - 13:03:53 CDT)
- Re: FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE toppar_water_ions.str LINE=*set nat ?NATC* Research Jubilant (Wed Apr 17 2013 - 16:54:08 CDT)
- command line rep creation Martin, Erik W (Wed Apr 17 2013 - 11:14:26 CDT)
- SASA Algorithm? Esra Bozkurt (Wed Apr 17 2013 - 11:04:24 CDT)
- build unit cells and supercells for VASP ゅ (Wed Apr 17 2013 - 10:03:30 CDT)
- Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 01:53:12 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 08:00:26 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 09:17:23 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 12:26:35 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 12:46:20 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 12:51:05 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 13:11:22 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 13:14:08 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Wenhao Liu (Wed Apr 17 2013 - 13:17:42 CDT)
- Re: Is it necessary to set up more than 1 hydrogen bonding for one Acceptor in Water Int. in ffTK Mayne, Christopher G (Wed Apr 17 2013 - 08:00:26 CDT)
- VMD water box vs. CHARMM Yarrow Madrona (Tue Apr 16 2013 - 18:21:20 CDT)
- Save trr using command line Steven Neumann (Tue Apr 16 2013 - 05:31:18 CDT)
- problem about displaying hbond in periodic box yi (Tue Apr 16 2013 - 04:22:06 CDT)
- fftk - Opt-charges Carolina Penhavel de souza (Mon Apr 15 2013 - 09:40:26 CDT)
- Mouse-Add/Remove Bonds DanLiu (Mon Apr 15 2013 - 07:04:24 CDT)
- Improper parameters for CNT Anurag Sharma (Sun Apr 14 2013 - 16:30:59 CDT)
- VMD, Paratool 陈航燕 (Fri Apr 12 2013 - 15:40:20 CDT)
- average structure generation from trajectory Sindrila Dutta Banik (Thu Apr 11 2013 - 02:00:10 CDT)
- put the water box in a grid and traverse for the atoms in each grid Gurunath Katagi (Thu Apr 11 2013 - 01:53:45 CDT)
- parameters for PE100 chain? kerexen_at_gmail.com (Wed Apr 10 2013 - 10:41:22 CDT)
- Placing a peptide between two points Mohan maruthi sena (Wed Apr 10 2013 - 02:47:31 CDT)
- fftk source code Francesco Pietra (Wed Apr 10 2013 - 01:05:13 CDT)
- is there a way to measure the long axis of a protein or angle between domains in VMD Kristine Manibog (Wed Apr 10 2013 - 00:54:46 CDT)
- Writing povray files from a VMD trajectory Gordon S Freeman (Tue Apr 09 2013 - 14:32:07 CDT)
- Re: how to convert dcd to pdbs in command line Yarrow Madrona (Mon Apr 08 2013 - 18:42:49 CDT)
- RE: how to convert dcd to pdbs in command line peter.schmidtke_at_fr.netgrs.com (Tue Apr 09 2013 - 01:12:20 CDT)
- Re: how to convert dcd to pdbs in command line Josh Vermaas (Tue Apr 09 2013 - 09:25:07 CDT)
- RE: how to convert dcd to pdbs in command line Bennion, Brian (Tue Apr 09 2013 - 12:44:59 CDT)
- Re: how to convert dcd to pdbs in command line Yarrow Madrona (Tue Apr 09 2013 - 19:50:10 CDT)
- Re: how to convert dcd to pdbs in command line Josh Vermaas (Tue Apr 09 2013 - 20:06:05 CDT)
- Re: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Wed Apr 10 2013 - 10:41:17 CDT)
- Re: how to convert dcd AND ALIGN molecules then to pdbs in command line Josh Vermaas (Wed Apr 10 2013 - 11:10:03 CDT)
- Re: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Thu Apr 11 2013 - 08:25:43 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Bennion, Brian (Wed Apr 10 2013 - 11:52:03 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Thu Apr 11 2013 - 08:33:14 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Bennion, Brian (Thu Apr 11 2013 - 10:08:08 CDT)
- RE: how to convert dcd AND ALIGN molecules then to pdbs in command line Yarrow Madrona (Thu Apr 11 2013 - 12:24:41 CDT)
- Re: how to convert dcd to pdbs in command line Josh Vermaas (Tue Apr 09 2013 - 09:25:07 CDT)
- Re: how to convert dcd to pdbs in command line Anthony Cruz Balberdi (Tue Apr 09 2013 - 10:00:24 CDT)
- RE: how to convert dcd to pdbs in command line peter.schmidtke_at_fr.netgrs.com (Tue Apr 09 2013 - 01:12:20 CDT)
- Disable autobonds for LAMMPS trajectory file John Michael Alex Grime (Mon Apr 08 2013 - 17:26:12 CDT)
- Merge Protein/Small Molecule psf/pdb Zachary E Tibbs (Mon Apr 08 2013 - 16:54:52 CDT)
- Concatenate translated pdb's in to one pdb file- Writepdb is giving error Mohan maruthi sena (Mon Apr 08 2013 - 06:27:15 CDT)
- Re: Qwrap Beta Issue J茅r么me H茅nin (Mon Apr 08 2013 - 05:45:35 CDT)
- moving center of protien to another new center x,y,z Mohan maruthi sena (Sun Apr 07 2013 - 10:31:03 CDT)
- Moving center of protein to another center x,y,z Mohan maruthi sena (Sun Apr 07 2013 - 10:28:52 CDT)
- how to visualize water movement over trajectory Yarrow Madrona (Sat Apr 06 2013 - 20:46:00 CDT)
- Kshatresh Dutta, let's connect on LinkedIn shiyong liu (Sat Apr 06 2013 - 00:06:13 CDT)
- Solvate with a define number of water molecule Yann Fichou (Thu Apr 04 2013 - 12:54:22 CDT)
- complex buried area Felipe Merino (Wed Apr 03 2013 - 11:07:38 CDT)
- fftk - Opt. Torsion Carolina Penhavel de souza (Tue Apr 02 2013 - 17:53:54 CDT)
- Quick wrapping J茅r么me H茅nin (Tue Apr 02 2013 - 10:05:11 CDT)
- How to build a coiled alpha-helix shixin yang (Tue Apr 02 2013 - 09:23:44 CDT)
- generate nanotube other than CNT Sundararajan Natarajan (Tue Apr 02 2013 - 06:26:43 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Tue Apr 02 2013 - 07:20:55 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Tue Apr 02 2013 - 14:06:48 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Mon Apr 15 2013 - 03:31:34 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Mon Apr 15 2013 - 04:02:27 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Mon Apr 15 2013 - 04:33:04 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Mon Apr 15 2013 - 04:50:46 CDT)
- Re: generate nanotube other than CNT Sundararajan Natarajan (Tue Apr 02 2013 - 14:06:48 CDT)
- Re: generate nanotube other than CNT Axel Kohlmeyer (Tue Apr 02 2013 - 07:20:55 CDT)
- Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 22:11:35 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk JC Gumbart (Mon Apr 01 2013 - 22:51:27 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 23:23:15 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 23:25:12 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Axel Kohlmeyer (Tue Apr 02 2013 - 02:06:50 CDT)
- RE: Issue in Cal. Bonded and Scan Torsion in fftk JC Gumbart (Tue Apr 02 2013 - 07:39:32 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Tue Apr 02 2013 - 08:53:49 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk John Stone (Tue Apr 09 2013 - 10:28:43 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk Win Liu (Mon Apr 01 2013 - 23:23:15 CDT)
- Re: Issue in Cal. Bonded and Scan Torsion in fftk JC Gumbart (Mon Apr 01 2013 - 22:51:27 CDT)
- Exported POSCAR does not match original Steve Jensen (Mon Apr 01 2013 - 17:12:37 CDT)
- CGTools with pdb and top files WuChaofu (Mon Apr 01 2013 - 02:55:13 CDT)
- Disable display resetview Crosskey, Mark William (Sun Mar 31 2013 - 22:38:11 CDT)
- FFTK bond optimization +idlepoll request Francesco Pietra (Sun Mar 31 2013 - 13:14:38 CDT)
- Re: One same issue happened as before in fftk Win Liu (Sun Mar 31 2013 - 11:37:19 CDT)
- One same issue happened as before in fftk Win Liu (Sat Mar 30 2013 - 21:00:47 CDT)
- bug in xsfplugin [patch included] Roberto Guerra (Sat Mar 30 2013 - 19:55:43 CDT)
- transparent option sollebac (Fri Mar 29 2013 - 02:55:20 CDT)
- Re: vmd-I: remove water, protein from a dcd Axel Kohlmeyer (Thu Mar 28 2013 - 17:42:06 CDT)
- How to strip atoms from dcd in command line Yarrow Madrona (Thu Mar 28 2013 - 16:37:45 CDT)
- vmd-I: remove water, protein from a dcd Yarrow Madrona (Thu Mar 28 2013 - 15:45:02 CDT)
- Error with NAMD Energy Anurag Sharma (Thu Mar 28 2013 - 15:25:11 CDT)
- Is there a script to calculate root-mean-square thermal displacement Z.Y.Qiu (Thu Mar 28 2013 - 07:51:31 CDT)
- FFTK Update Parameter File with Optimized Parameters - fails? Pawe艂 K臋dzierski (Thu Mar 28 2013 - 06:26:15 CDT)
- Re: FFTK Update Parameter File with Optimized Parameters - fails? Mayne, Christopher G (Thu Mar 28 2013 - 08:03:11 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Pawe艂 K臋dzierski (Thu Mar 28 2013 - 09:25:50 CDT)
- Re: FFTK... and now gaussian version or QMtool problem John Stone (Thu Mar 28 2013 - 09:34:50 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Mayne, Christopher G (Thu Mar 28 2013 - 11:13:33 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Pawe艂 K臋dzierski (Thu Mar 28 2013 - 19:23:45 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Mayne, Christopher G (Thu Mar 28 2013 - 20:52:28 CDT)
- Re: FFTK... and now gaussian version or QMtool problem Pawe艂 K臋dzierski (Thu Mar 28 2013 - 09:25:50 CDT)
- Re: FFTK Update Parameter File with Optimized Parameters - fails? Mayne, Christopher G (Thu Mar 28 2013 - 08:03:11 CDT)
- Computational Electrostatics for Biological Applications (CEBA'13) July 01-03, 2013 - Genova - Italy Walter Rocchia (Wed Mar 27 2013 - 17:49:09 CDT)
- Hotkeys don't work Aaron Taudt (Wed Mar 27 2013 - 03:50:41 CDT)
- FFTK Atom types Francesco Pietra (Wed Mar 27 2013 - 02:21:13 CDT)
- making the Orient plugin available in VMD Research Jubilant (Tue Mar 26 2013 - 17:30:20 CDT)
- Re: problems aligning two simillar structures Yarrow Madrona (Tue Mar 26 2013 - 14:19:48 CDT)
- problems aligning two simillar structures Yarrow Madrona (Tue Mar 26 2013 - 14:10:38 CDT)
- FFTK plugin, Water Inter issue Francesco Pietra (Tue Mar 26 2013 - 12:15:00 CDT)
- How to generate average structure from trajectory using VMD Sindrila Dutta Banik (Tue Mar 26 2013 - 07:13:00 CDT)
- RE: Theory of backmapping of CGTools WuChaofu (Mon Mar 25 2013 - 19:04:21 CDT)
- Theory of backmapping of CGTools WuChaofu (Mon Mar 25 2013 - 07:06:07 CDT)
- Tethering, or restraining, part of a molecule during MD playback John Keller (Mon Mar 25 2013 - 00:14:44 CDT)
- Aminoacid selection Juan Antonio Raygoza Garay (Sun Mar 24 2013 - 16:51:02 CDT)
- Morse potentail with charmm 27 Francesco Pietra (Sun Mar 24 2013 - 11:04:56 CDT)
- Re: vmd-l digest V1 #2344 Amit Jaiswal (Sun Mar 24 2013 - 02:26:04 CDT)
- Topo tools: can't use non-numeric string as operand of "+" Ivan Moncayo (Fri Mar 22 2013 - 08:36:15 CDT)
- protein secondary structure Juan Antonio Raygoza Garay (Thu Mar 21 2013 - 16:42:25 CDT)
- VMD 1.9.1 for 64-bit Windows Jernej Zidar (Tue Mar 19 2013 - 21:18:11 CDT)
- phantom omni linux install Thomas C. Bishop (Tue Mar 19 2013 - 11:28:14 CDT)
- How to save a snapshot from the trajectory in amber restrt formate Sindrila Dutta Banik (Tue Mar 19 2013 - 02:47:39 CDT)
- delete segments from dcd file yp sun (Tue Mar 19 2013 - 01:12:22 CDT)
- gofr between center of mass of a functional group and solvent AnkiReddy katha (Tue Mar 19 2013 - 00:52:52 CDT)
- Amorphous Structure code or builder for non-programmer Rawan Al Nsour (Mon Mar 18 2013 - 15:20:05 CDT)
- cp: cannot stat `../LINUXAMD64/vmd_LINUXAMD64': No such file or directory ゅ (Mon Mar 18 2013 - 09:16:44 CDT)
- atomselect within a loop Yohann Morille (Mon Mar 18 2013 - 06:17:15 CDT)
- membrane protein embedding Ramin Ekhteiari (Wed Mar 13 2013 - 14:32:57 CDT)
- Fit function Joseph Geraci (Wed Mar 13 2013 - 14:00:55 CDT)
- using cionize Shyno Mathew (Tue Mar 12 2013 - 17:44:55 CDT)
- Calculating rdfs without the VMD gui Salvador H-V (Tue Mar 12 2013 - 14:42:57 CDT)
- Re: Calculating rdfs without the VMD gui J茅r么me H茅nin (Wed Mar 13 2013 - 02:36:42 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Wed Mar 13 2013 - 10:37:39 CDT)
- Re: Calculating rdfs without the VMD gui Josh Vermaas (Wed Mar 13 2013 - 15:15:18 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Wed Mar 13 2013 - 17:46:25 CDT)
- Re: Calculating rdfs without the VMD gui Josh Vermaas (Wed Mar 13 2013 - 19:03:32 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Thu Mar 14 2013 - 08:26:32 CDT)
- Re: Calculating rdfs without the VMD gui Salvador H-V (Wed Mar 13 2013 - 10:37:39 CDT)
- Re: Calculating rdfs without the VMD gui J茅r么me H茅nin (Wed Mar 13 2013 - 02:36:42 CDT)
- problem related to generation of average structure from trajectory Sindrila Dutta Banik (Tue Mar 12 2013 - 14:06:20 CDT)
- namdenergy: different results for single vs multiple frames Joshua Adelman (Tue Mar 12 2013 - 11:53:01 CDT)
- clear altloc field Martin, Erik W (Mon Mar 11 2013 - 16:49:47 CDT)
- color problem with tachyon Rejwan (Tue Mar 12 2013 - 10:36:40 CDT)
- Re: color problem with tachyon John Stone (Tue Mar 12 2013 - 14:21:40 CDT)
- Re: color problem with tachyon Rejwan (Wed Mar 13 2013 - 11:37:43 CDT)
- Re: color problem with tachyon John Stone (Wed Mar 13 2013 - 11:53:23 CDT)
- POPC membrane in Leap, Amber Format Rejwan (Mon Jun 17 2013 - 10:34:32 CDT)
- writing PDB Rejwan (Thu Oct 24 2013 - 15:49:20 CDT)
- Re: writing PDB Josh Vermaas (Thu Oct 24 2013 - 17:03:50 CDT)
- RE: writing PDB Bennion, Brian (Thu Oct 24 2013 - 17:23:25 CDT)
- RE: writing PDB Matthew Stewart (Thu Oct 24 2013 - 18:30:51 CDT)
- Re: color problem with tachyon John Stone (Tue Mar 12 2013 - 14:21:40 CDT)
- Re: clear altloc field John Stone (Tue Mar 12 2013 - 14:50:37 CDT)
- color problem with tachyon Rejwan (Tue Mar 12 2013 - 10:36:40 CDT)
- dx file format Edward Lyman (Mon Mar 11 2013 - 16:41:46 CDT)
- ~Tawhid Ezaz~ Tawhid Ezaz (Mon Mar 11 2013 - 14:57:41 CDT)
- VMD-L Mailing List: Velocity autocorrelation and spatial distribution functions David Smith (Sun Mar 10 2013 - 14:33:17 CDT)
- 'Hands-on' Workshop on Computational Biophysics using VMD, NAMD, and ProDy, June 10-14, 2013 in Pittsburgh, PA David Brandon (Fri Mar 08 2013 - 12:22:27 CST)
- Tachyon Renderer and Multiple Representations Salomon Turgman Cohen (Fri Mar 08 2013 - 09:27:21 CST)
- (no subject) Jessica Padden (Thu Mar 07 2013 - 13:05:49 CST)
- Installation Tolga Akiner (Thu Mar 07 2013 - 10:17:37 CST)
- Re: Installation John Stone (Thu Mar 07 2013 - 10:34:17 CST)
- Re: Installation tolga.akiner (Fri Mar 08 2013 - 01:11:10 CST)
- transparent material: set different opacity andrea spitaleri (Fri Mar 08 2013 - 08:19:14 CST)
- Re: transparent material: set different opacity Axel Kohlmeyer (Fri Mar 08 2013 - 09:06:06 CST)
- Re: transparent material: set different opacity andrea spitaleri (Fri Mar 08 2013 - 09:19:38 CST)
- Re: transparent material: set different opacity Josh Vermaas (Fri Mar 08 2013 - 09:18:28 CST)
- Re: Installation John Stone (Mon Mar 11 2013 - 13:06:50 CDT)
- Re: Installation tolga.akiner (Fri Mar 08 2013 - 01:11:10 CST)
- Re: Installation John Stone (Thu Mar 07 2013 - 10:34:17 CST)
- Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Tue Mar 05 2013 - 14:01:21 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Tue Mar 05 2013 - 15:27:41 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Fri Mar 08 2013 - 11:56:12 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Fri Mar 08 2013 - 13:09:14 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Fri Mar 15 2013 - 09:25:32 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Mon Mar 18 2013 - 07:19:09 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Thu Mar 21 2013 - 10:43:25 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Mon Apr 15 2013 - 05:51:10 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Mon Apr 15 2013 - 09:51:45 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Jack Bulat (Wed May 29 2013 - 13:29:58 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Wed May 29 2013 - 13:36:10 CDT)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux Bogdan Costescu (Fri Mar 08 2013 - 11:56:12 CST)
- Re: Slow display with nVidia GeForce 9400GT and 3xx drivers on Linux John Stone (Tue Mar 05 2013 - 15:27:41 CST)
- Radial pair distribution function Bharath K. Srikanth (Fri Mar 01 2013 - 03:05:58 CST)
- gofr with PBC Khanal Rabi (Thu Feb 28 2013 - 19:19:06 CST)
- Amorphous Structure code or builder Rawan Al Nsour (Thu Feb 28 2013 - 14:47:14 CST)
- lammps charge data, adding bond Erik (Wed Feb 27 2013 - 19:50:07 CST)
- About PLUMED with NAMD VMD Francesco Pietra (Wed Feb 27 2013 - 02:16:28 CST)
- Problem related to the save trajectory] Sindrila Dutta Banik (Wed Feb 27 2013 - 00:35:46 CST)
- definition of single word "protein" selection Bennion, Brian (Tue Feb 26 2013 - 17:00:39 CST)
- Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Tue Feb 26 2013 - 15:52:38 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Tue Feb 26 2013 - 16:16:53 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Tue Feb 26 2013 - 16:35:54 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Wed Feb 27 2013 - 10:34:02 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Wed Feb 27 2013 - 15:59:32 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Wed Feb 27 2013 - 16:05:25 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console Maximilian Ebert (Tue Feb 26 2013 - 16:35:54 CST)
- Re: Load a molecule in a function without output and slow Tcl gui console John Stone (Tue Feb 26 2013 - 16:16:53 CST)
- VMD crashes with malloc error Fahimeh Baftizadeh (Tue Feb 26 2013 - 12:42:59 CST)
- ParseFEP plugin error Bernandie Jean (Tue Feb 26 2013 - 12:11:13 CST)
- Displaying Flat Cross-Sections Using Surface Representation Robert Johnson (Tue Feb 26 2013 - 11:59:28 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Mayne, Christopher G (Tue Feb 26 2013 - 12:58:11 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation John Stone (Tue Feb 26 2013 - 13:06:47 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Robert Johnson (Thu Feb 28 2013 - 16:29:40 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Robert Johnson (Thu Mar 28 2013 - 12:35:10 CDT)
- Re: Displaying Flat Cross-Sections Using Surface Representation John Stone (Thu Mar 28 2013 - 14:16:49 CDT)
- Re: Displaying Flat Cross-Sections Using Surface Representation John Stone (Tue Feb 26 2013 - 13:06:47 CST)
- Re: Displaying Flat Cross-Sections Using Surface Representation Mayne, Christopher G (Tue Feb 26 2013 - 12:58:11 CST)
- VMD Tutorial Help Nance, Sierra (Tue Feb 26 2013 - 09:07:41 CST)
- trajectory conversion: dcd to trr to xtc manali_at_bioinfo.net.in (Tue Feb 26 2013 - 03:59:34 CST)
- Can I calculate B-factor using VMD Sindrila Dutta Banik (Tue Feb 26 2013 - 01:19:10 CST)
- conversion from CHARMM27 psf to charmm36 with psfgen? Edward Lyman (Mon Feb 25 2013 - 08:37:12 CST)
- gofr with periodic boundary condition in vasp trajectory Khanal Rabi (Sun Feb 24 2013 - 19:08:17 CST)
- spectrum simulation francesco oteri (Sun Feb 24 2013 - 14:57:13 CST)
- Different output of Saltbridge calculation between Saltbridge plugin and Timeline Priyabrata Panigrahi (Sat Feb 23 2013 - 02:21:14 CST)
- measure fit rotation matrix convention Daniel Klose (Fri Feb 22 2013 - 10:16:23 CST)
- setting up the grid for periodic coulomb volmap calc Edward Lyman (Fri Feb 22 2013 - 09:19:43 CST)
- FPR monitor+glasses Marcel UJI (IMAP) (Fri Feb 22 2013 - 07:13:42 CST)
- about visualization in VMD hamid mosaddeghi (Thu Feb 21 2013 - 05:32:12 CST)
- Atom serial numbers in array format Marzieh Alishahi (Thu Feb 21 2013 - 03:26:33 CST)
- edit pdb file hamid mosaddeghi (Wed Feb 20 2013 - 18:03:13 CST)
- How to save coordinates of periodic systems skolev_at_mnet.bg (Wed Feb 20 2013 - 08:31:15 CST)
- Measuring the order parameter Rawan Al Nsour (Tue Feb 19 2013 - 11:59:31 CST)
- select by residue Jorgen Simonsen (Mon Feb 18 2013 - 11:45:55 CST)
- Surface won't close Sabine Reisser (Mon Feb 18 2013 - 09:45:38 CST)
- Spring script not working Davide Mercadante (Mon Feb 18 2013 - 07:26:13 CST)
- Problem related to the save trajectory Sindrila Dutta Banik (Mon Feb 18 2013 - 00:56:07 CST)
- porcupine plot - dynatraj server missing NG HUI WEN (Mon Feb 18 2013 - 00:18:29 CST)
- SSRestraints missing some beta sheets Charles Greenberg (Fri Feb 15 2013 - 18:57:14 CST)
- Licorice in transparent surface visualisation Sabine Reisser (Fri Feb 15 2013 - 08:57:40 CST)
- modeling rGO without ReaxFF David Cohen-Tanugi (Fri Feb 15 2013 - 08:53:15 CST)
- residency times continued Magnus Andersson (Fri Feb 15 2013 - 07:12:04 CST)
- making time lapse video Do Yong Kim (Thu Feb 14 2013 - 15:06:06 CST)
- Dynamic bonds for amorphous silicon carbide? Dave Schall (Thu Feb 14 2013 - 13:52:07 CST)
- psfread error Mohammad Elgamacy (Wed Feb 13 2013 - 08:55:03 CST)
- vmd1.9.2 alpha on windows/Mac valeria.losasso_at_stfc.ac.uk (Tue Feb 12 2013 - 10:42:01 CST)
- FW: vmd1.9.2 alpha on windows/Mac valeria.losasso_at_stfc.ac.uk (Tue Feb 12 2013 - 10:45:28 CST)
- Re: vmd1.9.2 alpha on windows/Mac John Stone (Thu Feb 14 2013 - 10:32:58 CST)
- Re: vmd1.9.2 alpha on windows/Mac John Stone (Mon Feb 25 2013 - 15:15:13 CST)
- How to display a selection from the Tk console Raul Araya (Tue Feb 12 2013 - 08:59:33 CST)
- VMD for Windows with VRPN option Stefano Ugolini (Tue Feb 12 2013 - 08:04:51 CST)
- Command not found Error Allison Rossetto (Mon Feb 11 2013 - 16:02:50 CST)
- draw structure with xyz coordinates DanLiu (Mon Feb 11 2013 - 09:46:48 CST)
- non-bonded residue-residue namdEnergy question Prof. Eddie (Mon Feb 11 2013 - 08:51:38 CST)
- problem with g(r) Ali Alizadeh (Sat Feb 09 2013 - 08:29:46 CST)
- differing particle numbers in each frame Gavin Melaugh (Fri Feb 08 2013 - 06:55:05 CST)
- Head Tracking for Desktop VR Displays using the WiiRemote and VMD Ajasja Ljubeti膷 (Thu Feb 07 2013 - 15:48:00 CST)
- isosurface for non-orthorhombic cells Torsten Kerber (Thu Feb 07 2013 - 08:55:52 CST)
- Colouring rings in paperchain gargiulo (Wed Feb 06 2013 - 09:04:01 CST)
- same problem Albert (Tue Feb 05 2013 - 12:31:29 CST)
- Unable to re-install vmd Soumya Lipsa Rath (Mon Feb 04 2013 - 00:01:33 CST)
- delet a frame from dcd file yp sun (Sat Feb 02 2013 - 19:59:51 CST)
- making movies in vmd Payman Pirzadeh (Fri Feb 01 2013 - 01:53:05 CST)
- Problem in loading the trajectories Soumya Lipsa Rath (Thu Jan 31 2013 - 22:35:29 CST)
- Removing an installed Plug-in aneesh cna (Thu Jan 31 2013 - 00:26:49 CST)
- PYTHONPATH Word too long francesco oteri (Tue Jan 29 2013 - 09:56:21 CST)
- how to configure VMD plugin location? Albert (Tue Jan 29 2013 - 01:35:26 CST)
- NameError: name 'AtomSel' is not defined Albert (Mon Jan 28 2013 - 11:38:16 CST)
- Extracting Entropies and Enthalpies With The ParseFEP Plugin Using SOS or BAR David Huggins (Fri Jan 25 2013 - 07:41:58 CST)
- cannot open vmd ragesh c (Fri Jan 25 2013 - 00:22:50 CST)
- plugin path problem Albert (Thu Jan 24 2013 - 12:33:04 CST)
- How to split large DCD file snoze pa (Thu Jan 24 2013 - 10:50:27 CST)
- Re: namd-l: Assigning Partial Charges to FE in Active Site Superoxide Dismutase. JC Gumbart (Wed Jan 23 2013 - 14:26:59 CST)
- compiling stopped without any obvious erros Albert (Wed Jan 23 2013 - 13:00:41 CST)
- another tachyon problem Albert (Wed Jan 23 2013 - 11:15:04 CST)
- tc.h problem Albert (Wed Jan 23 2013 - 10:50:27 CST)
- Dynamic bond representations Peitong Duan (Tue Jan 22 2013 - 16:44:02 CST)
- Color scale data range for coloring by timestep J茅r么me H茅nin (Mon Jan 21 2013 - 08:25:37 CST)
- Fwd: namd-l: About "add solvation" Francesco Pietra (Mon Jan 21 2013 - 03:49:06 CST)
- fftk charge optimization option ehsan zahedinejad (Sat Jan 19 2013 - 19:12:06 CST)
- tachyon configuration failed Albert (Sat Jan 19 2013 - 11:52:07 CST)
- Re: tachyon configuration failed Albert (Sat Jan 19 2013 - 11:53:19 CST)
- Re: Re: tachyon configuration failed John Stone (Tue Jan 22 2013 - 11:11:39 CST)
- Re: Re: tachyon configuration failed Albert (Tue Jan 22 2013 - 11:28:08 CST)
- Re: Re: tachyon configuration failed John Stone (Tue Jan 22 2013 - 11:30:55 CST)
- Re: Re: tachyon configuration failed Albert (Wed Jan 23 2013 - 09:32:58 CST)
- Re: Re: tachyon configuration failed John Stone (Wed Jan 23 2013 - 09:38:51 CST)
- Re: Re: tachyon configuration failed Albert (Wed Jan 23 2013 - 10:11:17 CST)
- Re: Re: tachyon configuration failed John Stone (Tue Jan 22 2013 - 11:11:39 CST)
- Re: tachyon configuration failed Albert (Sat Jan 19 2013 - 11:53:19 CST)
- ied with VMD 1.9.1 Antonija Tomi (Fri Jan 18 2013 - 09:03:05 CST)
- about inorganic builder and define variable hamid mosaddeghi (Thu Jan 17 2013 - 16:19:23 CST)
- VMD-1.9.1 and TC/TK-8.6 break analysis g(r) and IR Spectral Density Calculator Benj FitzPatrick (Thu Jan 17 2013 - 14:47:11 CST)
- Re: VMD-1.9.1 and TC/TK-8.6 break analysis g(r) and IR Spectral Density Calculator John Stone (Tue Feb 26 2013 - 16:04:09 CST)
- RE: Editing in Molefacture plugin by importing pdb file Him Bandhu Upadhyay (Thu Jan 17 2013 - 11:49:41 CST)
- Editing in Molefacture plugin by importing pdb file Him Bandhu Upadhyay (Thu Jan 17 2013 - 10:36:52 CST)
- Martini RBCG denilson_at_dqi.ufla.br (Wed Jan 16 2013 - 12:18:00 CST)
- ssrestraints for determining the secondary structure of large protein complex Yujie Wu (Wed Jan 16 2013 - 05:51:36 CST)
- Variable number of steps in run command? David Cohen-Tanugi (Tue Jan 15 2013 - 10:30:55 CST)
- CG- CNT hamid mosaddeghi (Sat Jan 12 2013 - 06:05:02 CST)
- displaying charge distribution mpincu (Fri Jan 11 2013 - 15:28:51 CST)
- write new dcd after duplicating periodic images? Fatemesadat Emami (Fri Jan 11 2013 - 15:12:35 CST)
- periodic images in the hydrogen bond tool Fatemesadat Emami (Fri Jan 11 2013 - 14:15:37 CST)
- Autoionize error in VMD Shaherin Basith (Fri Jan 11 2013 - 02:06:22 CST)
- Potential memory consumption bug in VMD 1.9.1 John Jumper (Thu Jan 10 2013 - 21:08:22 CST)
- Error in loading large trajectories Esam Tolba (Thu Jan 10 2013 - 15:56:15 CST)
- VMD read wrong charges if the atom type is longer than 5 characters in PSF file Jiawei Xu (Thu Jan 10 2013 - 11:30:40 CST)
- Regarding fit_angle.tcl script Chola Regmi (Thu Jan 10 2013 - 10:45:59 CST)
- rgyr from big DCD Steven Neumann (Mon Jan 07 2013 - 05:49:58 CST)
- RE: Stride update in every frame of a trajectory? peter.schmidtke_at_fr.netgrs.com (Mon Jan 07 2013 - 03:03:13 CST)
- Stride update in every frame of a trajectory? Martin, Erik W (Sat Jan 05 2013 - 10:57:17 CST)
- how to plot per-atom field variable Wei Gao (Sat Jan 05 2013 - 10:42:53 CST)
- tcl script for vmd troubleshooting Martin, Erik W (Fri Jan 04 2013 - 11:17:30 CST)
- FW: 3D-Connexion Space Navigator for Macosx Passerone, Daniele (Fri Jan 04 2013 - 00:47:42 CST)
- How to read every second frame with bigdcd Jiawei Xu (Thu Jan 03 2013 - 11:33:31 CST)
- 'Abort file I/O' key not working aneesh cna (Fri Dec 28 2012 - 04:59:56 CST)
- about atomselect command Marzieh Alishahi (Mon Dec 24 2012 - 09:13:08 CST)
- python simple script Adrian Jasi駍ki (Fri Dec 21 2012 - 04:52:41 CST)
- VMD not displaying represenations by line maria goranovic (Thu Dec 20 2012 - 04:48:03 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Dec 20 2012 - 09:49:40 CST)
- Re: VMD not displaying represenations by line maria goranovic (Thu Dec 20 2012 - 09:53:05 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Dec 20 2012 - 15:33:36 CST)
- Re: VMD not displaying represenations by line maria goranovic (Fri Dec 21 2012 - 03:19:26 CST)
- Re: VMD not displaying represenations by line maria goranovic (Thu Jan 03 2013 - 04:24:09 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Jan 03 2013 - 09:59:07 CST)
- Re: VMD not displaying represenations by line maria goranovic (Thu Dec 20 2012 - 09:53:05 CST)
- Re: VMD not displaying represenations by line John Stone (Thu Dec 20 2012 - 09:49:40 CST)
- Tachyon does not capture the dark colors! Fatemesadat Emami (Wed Dec 19 2012 - 13:25:20 CST)
- Real-time Representation Changes During Interactive MD Chris Ing (Wed Dec 19 2012 - 11:36:22 CST)
- vmd 1.9.2a11macx86_64 on OSX 10.8 Raul Araya (Wed Dec 19 2012 - 07:28:33 CST)
- Gromacs index file Ignacio Fern醤dez Galv醤 (Wed Dec 19 2012 - 03:01:58 CST)
- problem of selection Albert (Wed Dec 19 2012 - 02:52:30 CST)
- Update atom labels each frame Sandeep Kumar Reddy (Wed Dec 19 2012 - 00:42:18 CST)
- How to get the coordinate of periodic images anyy zsj (Tue Dec 18 2012 - 23:58:53 CST)
- VMD 1.9.1 src // GCC 4.7.0 - Error compiling plugins directory Adam Brenner (Tue Dec 18 2012 - 19:32:00 CST)
- can vmd add protons to particular atoms? yp sun (Tue Dec 18 2012 - 00:43:01 CST)
- combine.tcl yp sun (Mon Dec 17 2012 - 08:52:24 CST)
- delete of some molecules mohammad agha (Fri Dec 14 2012 - 23:42:56 CST)
- visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Thu Dec 13 2012 - 11:46:18 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Thu Dec 13 2012 - 12:53:11 CST)
- RE: visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Fri Dec 14 2012 - 17:06:03 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Sat Dec 15 2012 - 01:07:21 CST)
- RE: visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Mon Dec 17 2012 - 10:19:02 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Mon Dec 17 2012 - 10:37:43 CST)
- RE: visualizing multiframe trajectory simultaneously with multimolecule Bennion, Brian (Fri Dec 14 2012 - 17:06:03 CST)
- Re: visualizing multiframe trajectory simultaneously with multimolecule Axel Kohlmeyer (Thu Dec 13 2012 - 12:53:11 CST)
- problem with ascribing data to the user field Pawel Siuda (Thu Dec 13 2012 - 04:48:58 CST)
- Re: visualizing certain sanpshots on top of each other Suresh (Mon Dec 10 2012 - 22:27:04 CST)
- visualizing certain sanpshots on top of each other Fatemesadat Emami (Mon Dec 10 2012 - 13:23:23 CST)
- VMD : Force Field Toolkit : Help Esra Bozkurt (Mon Dec 10 2012 - 13:21:06 CST)
- VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 09:14:43 CST)
- Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 09:19:55 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 John Stone (Mon Dec 10 2012 - 11:40:11 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 14:11:53 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 16:58:57 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Tue Dec 11 2012 - 05:10:38 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Bogdan Costescu (Tue Dec 11 2012 - 07:50:23 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 John Stone (Tue Dec 11 2012 - 08:59:37 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Thu Dec 13 2012 - 11:41:46 CST)
- Re: Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 John Stone (Mon Dec 10 2012 - 11:40:11 CST)
- Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Axel Kohlmeyer (Mon Dec 10 2012 - 10:22:49 CST)
- Re: VMD 1.9.1 core dumps (CentOS-5 x86_64) nvidia drivers: 304.64/4x GTX 680 Tru Huynh (Mon Dec 10 2012 - 09:19:55 CST)
- Getting volumetric map from old Insight file into VMD-readable format Tristan Croll (Sun Dec 09 2012 - 22:36:44 CST)
- VMD-CUDA crash on Mac OSX 10.8.2 James Conway (Thu Dec 06 2012 - 12:35:11 CST)
- Coloring lots of Groups Doran Bennett (Thu Dec 06 2012 - 10:25:06 CST)
- invalid command name "dict" mohammad agha (Thu Dec 06 2012 - 01:26:01 CST)
- error while loading shared libraries: libcudart.so.4 Micha艂 Kadlof (Wed Dec 05 2012 - 19:25:26 CST)
- Default XML format Tim Moore (Wed Dec 05 2012 - 09:55:15 CST)
- Use Movie Maker Plugin in Script Aaron Taudt (Wed Dec 05 2012 - 08:40:46 CST)
- vmd invalid connection error when launched Huixi Violet Zhang (Tue Dec 04 2012 - 14:48:01 CST)
- Full-Screen display Sabine Reisser (Tue Dec 04 2012 - 06:54:47 CST)
- A problem about atomselect command in a script Z.Y.Qiu (Mon Dec 03 2012 - 22:53:30 CST)
- use volmap tool for probability density map Liyu Jin (Leo) (Sat Dec 01 2012 - 07:56:30 CST)
- Re: use volmap tool for probability density map John Stone (Sat Dec 01 2012 - 22:36:22 CST)
- unable to load cartoon represention of my peptide Shubhadip Das (Sat Dec 01 2012 - 01:49:23 CST)
- cant open .car file Erik (Fri Nov 30 2012 - 12:25:30 CST)
- Question regarding dihedral fitting using fftk ehsan zahedinejad (Fri Nov 30 2012 - 00:23:42 CST)
- delete the most recent atomselect? Fatemesadat Emami (Thu Nov 29 2012 - 14:21:23 CST)
- Setting up a Phantom Omni for use with VMD on CentOS 6 Ray, William (Thu Nov 29 2012 - 12:22:23 CST)
- How do I make sure the normals value of trinorms? javacfish (Wed Nov 28 2012 - 14:21:16 CST)
- not very helpful documentation Philippe Bopp / temporary (Wed Nov 28 2012 - 09:02:28 CST)
- (no subject) Mustafa Tekpinar (Tue Nov 27 2012 - 15:00:55 CST)
- update selection every frame not working Pawel Siuda (Mon Nov 26 2012 - 15:41:15 CST)
- compiled failed Albert (Mon Nov 26 2012 - 12:16:28 CST)
- Coarse Grained - angle/bond parameters Steven Neumann (Mon Nov 26 2012 - 10:20:33 CST)
- python script failed Albert (Mon Nov 26 2012 - 04:44:12 CST)
- 3D-Connexion Space Navigator for Macosx Passerone, Daniele (Wed Nov 21 2012 - 04:35:43 CST)
- Hole program for vmd hole tcl script Ban Arn (Tue Nov 20 2012 - 08:59:20 CST)
- Re: Hole program for vmd hole tcl script John Stone (Tue Nov 20 2012 - 10:54:38 CST)
- RE: Hole program for vmd hole tcl script Bennion, Brian (Tue Nov 20 2012 - 12:14:30 CST)
- Re: Hole program for vmd hole tcl script Ban Arn (Wed Nov 21 2012 - 04:19:09 CST)
- Re: Hole program for vmd hole tcl script Jan Brezovsky (Wed Nov 21 2012 - 05:52:37 CST)
- Re: Hole program for vmd hole tcl script Ban Arn (Wed Nov 21 2012 - 08:19:48 CST)
- Re: Hole program for vmd hole tcl script Jan Brezovsky (Wed Nov 21 2012 - 08:54:18 CST)
- RE: Hole program for vmd hole tcl script Bennion, Brian (Wed Nov 21 2012 - 10:20:21 CST)
- Re: Hole program for vmd hole tcl script Grace Brannigan (Wed Nov 21 2012 - 11:32:27 CST)
- Re: Hole program for vmd hole tcl script Jan Brezovsky (Wed Nov 21 2012 - 13:39:17 CST)
- RE: Hole program for vmd hole tcl script Bennion, Brian (Tue Nov 20 2012 - 12:14:30 CST)
- Re: Hole program for vmd hole tcl script John Stone (Tue Nov 20 2012 - 10:54:38 CST)
- Drawing Method: Lines does not display anything Clarinet (Tue Nov 20 2012 - 08:04:09 CST)
- How to calculate the Hydrogen bond strengh 肖富贵 (Tue Nov 20 2012 - 06:10:22 CST)
- [Solved]RE: molfile_plugins makefile errors Bennion, Brian (Mon Nov 19 2012 - 18:09:11 CST)
- Structural Change of DNA satya kumar (Mon Nov 19 2012 - 17:50:42 CST)
- VMD can't display new PDB secondary structure properly (pyMol, jMol can) Larry Guy (Mon Nov 19 2012 - 16:00:29 CST)
- RE: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Bennion, Brian (Mon Nov 19 2012 - 17:30:19 CST)
- Re: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Mayne, Christopher G (Mon Nov 19 2012 - 18:46:09 CST)
- Re: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Larry Guy (Mon Nov 19 2012 - 18:52:52 CST)
- RE: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . Martin, Erik W (Mon Nov 19 2012 - 20:03:29 CST)
- Re: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . John Stone (Mon Nov 19 2012 - 21:02:20 CST)
- Re: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . Boris Steipe (Tue Nov 20 2012 - 11:20:04 CST)
- Re: VMD can't display new PDB secondary structure properly ( pyMol, jMol can). . Boris Steipe (Tue Nov 20 2012 - 14:44:53 CST)
- Re: VMD can't display new PDB secondary structure properly (pyMol, jMol can) John Stone (Mon Nov 19 2012 - 18:18:10 CST)
- RE: VMD can't display new PDB secondary structure properly (pyMol, jMol can) Bennion, Brian (Mon Nov 19 2012 - 17:30:19 CST)
- Error in RATTLE algorithm Stefan Franzen (Mon Nov 19 2012 - 15:38:05 CST)
- molfile_plugins makefile errors Bennion, Brian (Mon Nov 19 2012 - 15:24:33 CST)
- building plugins fails on tcl based plugins Bennion, Brian (Mon Nov 19 2012 - 14:59:18 CST)
- (no subject) Gert Peters (Sun Nov 18 2012 - 12:50:32 CST)
- how to measure the distance of two atoms in 1000 conformations? 肖富贵 (Sat Nov 17 2012 - 07:33:39 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Bj酶rnar Jensen (Mon Nov 19 2012 - 07:05:21 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Thomas Evangelidis (Mon Nov 19 2012 - 09:04:07 CST)
- VMD QMTool Martin, Erik W (Mon Nov 19 2012 - 11:42:19 CST)
- Re: VMD QMTool Mayne, Christopher G (Mon Nov 19 2012 - 13:20:06 CST)
- RE: VMD QMTool Bennion, Brian (Mon Nov 19 2012 - 14:51:36 CST)
- RE: VMD QMTool Martin, Erik W (Mon Nov 19 2012 - 19:19:23 CST)
- Re: VMD QMTool JC Gumbart (Tue Nov 20 2012 - 00:09:17 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Thomas Evangelidis (Mon Nov 19 2012 - 09:04:07 CST)
- Re: how to measure the distance of two atoms in 1000 conformations? Bj酶rnar Jensen (Mon Nov 19 2012 - 07:05:21 CST)
- creating SiO2 device with Inorganic Builder Marzieh Alishahi (Sat Nov 17 2012 - 02:36:22 CST)
- Typo in my previous e-mail subject. It's: "VMD" very slow on a 8400M GS laptop.... Pietro Amodeo (Sat Nov 17 2012 - 02:18:12 CST)
- MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Fri Nov 16 2012 - 13:44:51 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Sun Nov 18 2012 - 22:25:27 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 10:25:33 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Mon Nov 19 2012 - 11:25:48 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 12:58:26 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 14:03:38 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Mon Nov 19 2012 - 18:28:54 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 20:18:27 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 Pietro Amodeo (Mon Nov 19 2012 - 10:25:33 CST)
- Re: MD very slow on a 8400M GS laptop (but not on a GT230M one) after NVidia driver update to 304.64 or 310.14 John Stone (Sun Nov 18 2012 - 22:25:27 CST)
- How to label the chains in a multimer 肖富贵 (Fri Nov 16 2012 - 09:00:21 CST)
- how to delete one peptide from dimer 肖富贵 (Thu Nov 15 2012 - 07:26:22 CST)
- pbc box problem Albert (Thu Nov 15 2012 - 01:37:27 CST)
- RE: acylated and amidated parameters. Bennion, Brian (Wed Nov 14 2012 - 11:52:05 CST)
- periodicity and bonds Celia Bremer (Wed Nov 14 2012 - 10:23:18 CST)
- tc.h error while compiling vmd Bennion, Brian (Tue Nov 13 2012 - 16:00:27 CST)
- Installation error with rlwrap Matthew Barlow (Tue Nov 13 2012 - 13:41:55 CST)
- calculate HBOND George Lai (Mon Nov 12 2012 - 19:48:50 CST)
- psfgen generating incorrect dihedrals Sasha Perkins (Thu Nov 08 2012 - 16:40:39 CST)
- test VMD mailist post Erik Winardi (Thu Nov 08 2012 - 14:42:36 CST)
- Units of bond distance in vmd siladitya mukherjee (Thu Nov 08 2012 - 11:04:06 CST)
- vmd cause linux system freezes randomly Kasra Fattah (Wed Nov 07 2012 - 19:18:01 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Wed Nov 07 2012 - 23:03:50 CST)
- Re: vmd cause linux system freezes randomly Axel Kohlmeyer (Thu Nov 08 2012 - 00:15:21 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Fri Nov 09 2012 - 11:07:12 CST)
- Re: vmd cause linux system freezes randomly John Stone (Fri Nov 09 2012 - 13:32:35 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Mon Nov 12 2012 - 18:44:02 CST)
- Re: vmd cause linux system freezes randomly John Stone (Wed Nov 14 2012 - 22:20:11 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Fri Nov 16 2012 - 17:03:26 CST)
- Re: vmd cause linux system freezes randomly John Stone (Sun Nov 18 2012 - 22:21:22 CST)
- Re: vmd cause linux system freezes randomly John Stone (Mon Nov 19 2012 - 17:44:27 CST)
- Re: vmd cause linux system freezes randomly Kasra Fattah (Wed Nov 07 2012 - 23:03:50 CST)
- dihedral energy using namdenergy -regd Rajitha Tatikonda (Wed Nov 07 2012 - 06:52:20 CST)
- periodic images of molecule containing custom graphics rocfo (Wed Nov 07 2012 - 05:31:46 CST)
- vmd crashes during gromacs trr loading Roberto Gaspari (Wed Nov 07 2012 - 02:05:11 CST)
- 3rd party tools- vmd Ban Arn (Tue Nov 06 2012 - 11:46:59 CST)
- Solvating protein in water sucrose solution amin_at_imtech.res.in (Tue Nov 06 2012 - 11:01:17 CST)
- Workshop on Scientific Software Development at ICTP in Trieste Axel Kohlmeyer (Thu Nov 01 2012 - 09:39:46 CDT)
- Re: control the spacing between the dashes in the hydrogen bonding between two atoms mahesh gudem (Tue Oct 30 2012 - 07:48:21 CDT)
- Command line representation Aronica, Pietro (Mon Oct 29 2012 - 06:57:30 CDT)
- Colouring by velocity component in VMD Michael Doig (Mon Oct 29 2012 - 05:20:27 CDT)
- IMD with Novint Falcon George Patargias (Fri Oct 26 2012 - 06:01:47 CDT)
- how to extract a frame in a binary coordinate restart file format for NAMD ? Jose Borreguero (Wed Oct 24 2012 - 14:13:37 CDT)
- Secondary structure analysis ngpntm_at_gmail.com (Wed Oct 24 2012 - 05:44:33 CDT)
- Error in reading data file prakhar gupta (Tue Oct 23 2012 - 08:50:50 CDT)
- Units reported by VMD SASA ??? Germ醤 Andr閟 Mi駉 (Mon Oct 22 2012 - 19:06:35 CDT)
- Re: Re: how to make separate molecule whole? Axel Kohlmeyer (Sun Oct 21 2012 - 23:20:57 CDT)
- Re: how to make separate molecule whole? Axel Kohlmeyer (Sun Oct 21 2012 - 11:06:32 CDT)
- Visualizing phonon displacement patterns from axsf format forces? Ij鋝 Mari (Sun Oct 21 2012 - 01:46:49 CDT)
- calculate end-to-end distance with trajectory files Eric Lovejoy (Sat Oct 20 2012 - 16:44:13 CDT)
- VMD (and NAMD) fail to read simple AMBER prmtop file (and it's not the SCEE and SCNB flags) Jose Borreguero (Sat Oct 20 2012 - 15:57:16 CDT)
- Selecting waters between two given distances from a particular point Sajeewa Pemasinghe (Fri Oct 19 2012 - 21:13:57 CDT)
- Application Error message during dihedral optimization using FFTK Him Bandhu Upadhyay (Thu Oct 18 2012 - 21:53:45 CDT)
- how to put command line arguments in tcl script Vikas Varshney (Thu Oct 18 2012 - 14:30:52 CDT)
- duplicating an equilibrated system with psfgen Gianluca Lattanzi (Wed Oct 17 2012 - 11:11:09 CDT)
- Graphic card Han Hu (Wed Oct 17 2012 - 08:27:40 CDT)
- postdoc position available JC Gumbart (Tue Oct 16 2012 - 00:47:41 CDT)
- pick center with tcl text command Yi Shang (Mon Oct 15 2012 - 11:59:59 CDT)
- coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Mon Oct 15 2012 - 10:53:26 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Axel Kohlmeyer (Mon Oct 15 2012 - 14:12:33 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 10:11:24 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Axel Kohlmeyer (Tue Oct 16 2012 - 10:33:57 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 11:51:51 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 13:37:55 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Vikas Varshney (Tue Oct 16 2012 - 10:11:24 CDT)
- Re: coloring atoms based on max bond length; Need help with bond retrieval Axel Kohlmeyer (Mon Oct 15 2012 - 14:12:33 CDT)
- VRPN driver for Novint Falcon haptic device available - Looking for Testers Marcos Ackel (Sun Oct 14 2012 - 12:31:59 CDT)
- Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Axel Kohlmeyer (Sun Oct 14 2012 - 13:31:12 CDT)
- Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Marcos Ackel (Wed Oct 17 2012 - 20:58:31 CDT)
- RE: Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Tristan Croll (Wed Jul 03 2013 - 23:32:06 CDT)
- Re: Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Axel Kohlmeyer (Wed Jul 03 2013 - 23:44:18 CDT)
- RE: Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Tristan Croll (Wed Jul 03 2013 - 23:46:50 CDT)
- RE: Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Tristan Croll (Fri Aug 16 2013 - 06:41:17 CDT)
- Re: Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Axel Kohlmeyer (Sat Aug 17 2013 - 09:05:43 CDT)
- Re: Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers John Stone (Mon Aug 19 2013 - 11:52:52 CDT)
- Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Marcos Ackel (Wed Oct 17 2012 - 20:58:31 CDT)
- Re: VRPN driver for Novint Falcon haptic device available - Looking for Testers Axel Kohlmeyer (Sun Oct 14 2012 - 13:31:12 CDT)
- problem of VMD-1.91 in MacOS10.8 Albert (Sat Oct 13 2012 - 11:09:44 CDT)
- secondary structure calculations Bennion, Brian (Thu Oct 11 2012 - 18:16:25 CDT)
- Error message -" cannot find NAMD binary files" during parameterization using FFTK plugin. Him Bandhu Upadhyay (Thu Oct 11 2012 - 12:41:59 CDT)
- Problem in invoking VMD P A Deshpande (Mon Oct 08 2012 - 10:27:00 CDT)
- Heat mapper Esam Tolba (Mon Oct 08 2012 - 05:53:04 CDT)
- VMD on Mac OS X, converter problem DanLiu (Mon Oct 08 2012 - 02:44:56 CDT)
- Coloring bonds in VMD Mingchao Wang (Mon Oct 08 2012 - 01:24:21 CDT)
- Script for reading Gaussian 09 MD file? John Keller (Fri Oct 05 2012 - 17:06:49 CDT)
- Visualizing DNA Damage satya kumar (Fri Oct 05 2012 - 14:40:05 CDT)
- Lennard-Jones parameters of rubidium Abolfazl Bayat (Fri Oct 05 2012 - 10:44:19 CDT)
- adding 3rdparty plugins in VMD-1.9.1 Ban Arn (Fri Oct 05 2012 - 07:00:11 CDT)
- Heat mapper Esam Tolba (Thu Oct 04 2012 - 16:42:25 CDT)
- Rendering "draw text" in Povray Joshua D. Moore (Thu Oct 04 2012 - 12:12:32 CDT)
- Persistent troubles with tk fonts Vlastimil Z铆ma (Thu Oct 04 2012 - 04:07:03 CDT)
- Re: Persistent troubles with tk fonts John Stone (Fri Oct 05 2012 - 09:08:05 CDT)
- Re: Persistent troubles with tk fonts Vlastimil Z韒a (Fri Oct 05 2012 - 12:07:49 CDT)
- Re: Persistent troubles with tk fonts Vlastimil Z铆ma (Wed Nov 27 2013 - 10:11:34 CST)
- Re: Persistent troubles with tk fonts John Stone (Wed Nov 27 2013 - 13:09:04 CST)
- Re: Persistent troubles with tk fonts Vlastimil Z铆ma (Wed Dec 04 2013 - 03:11:02 CST)
- Re: Persistent troubles with tk fonts Vlastimil Z铆ma (Wed Aug 13 2014 - 04:12:10 CDT)
- Re: Persistent troubles with tk fonts Josh Vermaas (Wed Aug 13 2014 - 09:48:33 CDT)
- Re: Persistent troubles with tk fonts Vlastimil Z铆ma (Wed Aug 13 2014 - 11:34:42 CDT)
- Re: Persistent troubles with tk fonts Vlastimil Z铆ma (Wed Aug 13 2014 - 12:21:12 CDT)
- Re: Persistent troubles with tk fonts John Stone (Wed Aug 13 2014 - 12:28:32 CDT)
- Re: Persistent troubles with tk fonts John Stone (Mon Feb 09 2015 - 15:32:56 CST)
- Re: Persistent troubles with tk fonts Vlastimil Z韒a (Fri Oct 05 2012 - 12:07:49 CDT)
- Re: Persistent troubles with tk fonts John Stone (Fri Oct 05 2012 - 09:08:05 CDT)
- Fw: VMD compile on windows (where is windows.h?) Marcos Ackel (Wed Oct 03 2012 - 13:48:45 CDT)
- compiling VMD with gcc 4.7 Vlad Cojocaru (Wed Oct 03 2012 - 09:37:45 CDT)
- VMD compile on windows (where is windows.h?) Marcos Ackel (Tue Oct 02 2012 - 15:17:48 CDT)
- regarding representations, resolution and length of trajectory movies Derya Meral (Tue Oct 02 2012 - 13:00:54 CDT)
- Lennard-Jones parameters Abolfazl Bayat (Tue Oct 02 2012 - 10:28:38 CDT)
- question about fftk Carolina Penhavel de souza (Tue Oct 02 2012 - 08:26:12 CDT)
- writing Gaussian input files in FFTK ..... Him Bandhu Upadhyay (Mon Oct 01 2012 - 12:40:44 CDT)
- Fwd: RE:psfgen and CG lloyd riggs (Mon Oct 01 2012 - 12:10:05 CDT)
- RE:psfgen and CG lloyd riggs (Mon Oct 01 2012 - 11:39:43 CDT)
- Solvated outside the box Steven Neumann (Mon Oct 01 2012 - 02:58:44 CDT)
- Support for Retina displays? FX (Sun Sep 30 2012 - 05:40:23 CDT)
- Radius of gyration from Big DCD flavio seixas (Thu Sep 27 2012 - 14:08:31 CDT)
- Color atoms Ivan Moncayo (Thu Sep 27 2012 - 11:59:32 CDT)
- IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 09:57:52 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Thu Sep 27 2012 - 10:15:08 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 10:51:44 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 14:21:31 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 15:13:03 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Sun Sep 30 2012 - 16:50:11 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Mon Oct 01 2012 - 10:09:39 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Mon Oct 01 2012 - 10:23:45 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Fri Oct 05 2012 - 12:41:42 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Thu Oct 18 2012 - 10:36:25 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Mon Oct 22 2012 - 11:15:38 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 13:09:55 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? William Ray (Thu Sep 27 2012 - 10:51:44 CDT)
- Re: IMD and AutoIMD bug when releasing forces on residues? John Stone (Thu Sep 27 2012 - 10:15:08 CDT)
- Re: Get objects from precompiled VMD? Axel Kohlmeyer (Thu Sep 27 2012 - 06:11:16 CDT)
- Get objects from precompiled VMD? Sabine Reisser (Thu Sep 27 2012 - 04:32:01 CDT)
- High Bound charge values missing during charge optimization in FFTK Him Bandhu Upadhyay (Wed Sep 26 2012 - 22:32:44 CDT)
- Convergence of the Gram-Charlier expansion Ali Khanlarkhani (Wed Sep 26 2012 - 10:36:37 CDT)
- Big DCD file help flavio seixas (Tue Sep 25 2012 - 10:16:29 CDT)
- Big DCD file flavio seixas (Tue Sep 25 2012 - 07:37:40 CDT)
- Lammps simulation Ivan Moncayo (Mon Sep 24 2012 - 11:39:06 CDT)
- Linking Error on Mac OS X Stephen Herbein (Mon Sep 24 2012 - 10:45:25 CDT)
- Printing accessible hydrophobic surface area Sabine Reisser (Mon Sep 24 2012 - 09:41:04 CDT)
- Extracting chi angles / Saving coordinate with a script Jon (Mon Sep 24 2012 - 03:56:59 CDT)
- Getting trajectories from DCD files? Venkata Mandala (Sun Sep 23 2012 - 13:48:30 CDT)
- changing name of N and C term residues Martin, Erik W (Fri Sep 21 2012 - 10:23:12 CDT)
- Re: VMD in Linux, assigning a variable using awk Axel Kohlmeyer (Thu Sep 20 2012 - 14:40:52 CDT)
- VMD in Linux, assigning a variable using awk Joshua D. Moore (Thu Sep 20 2012 - 13:44:04 CDT)
- Use of topotools kirtana S (Thu Sep 20 2012 - 00:13:47 CDT)
- Name selections Prof. Eddie (Wed Sep 19 2012 - 13:23:33 CDT)
- Color code the structure by RMSF values Esam Tolba (Wed Sep 19 2012 - 11:40:26 CDT)
- compiling vmd with g++-4.6 on ubuntu Sandeep Gupta (Wed Sep 19 2012 - 06:45:55 CDT)
- Reading trajectories from FMO-MD run Rasoul Nasiri (Wed Sep 19 2012 - 05:00:20 CDT)
- How to create strong bond between atoms in VMD ragesh c (Wed Sep 19 2012 - 04:24:38 CDT)
- How to create strong bond between atoms in VMD ragesh c (Wed Sep 19 2012 - 04:22:41 CDT)
- Q-chem MD output with VMD? John Keller (Wed Sep 19 2012 - 01:53:38 CDT)
- Hello hanif mahboobi (Tue Sep 18 2012 - 18:41:20 CDT)
- (no subject) ragesh c (Tue Sep 18 2012 - 12:22:58 CDT)
- Using Tools (grab, tug, etc) Marcos Ackel (Mon Sep 17 2012 - 13:53:51 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Sep 18 2012 - 14:40:12 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Tue Sep 18 2012 - 15:17:01 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Wed Sep 19 2012 - 20:14:01 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Thu Sep 20 2012 - 16:55:13 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Thu Sep 20 2012 - 22:23:02 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Mon Sep 24 2012 - 18:40:35 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Sep 25 2012 - 16:40:49 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Wed Sep 26 2012 - 15:43:19 CDT)
- Re: Using Tools (grab, tug, etc) Marcos Ackel (Sun Oct 14 2012 - 12:42:38 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Oct 02 2012 - 16:56:55 CDT)
- Re: Using Tools (grab, tug, etc) John Stone (Tue Sep 18 2012 - 14:40:12 CDT)
- APBS location in vmdrc ? Sabine Reisser (Mon Sep 17 2012 - 10:51:52 CDT)
- VMD_waterbox Shomesankar Bhunia (Sun Sep 16 2012 - 23:23:59 CDT)
- How to disable CUDA in VMD 1.9.1? Joakim Swedberg (Sun Sep 16 2012 - 21:48:38 CDT)
- Invitation to connect on LinkedIn gorka lasso via LinkedIn (Sat Sep 15 2012 - 12:05:12 CDT)
- Determining the Size of my Molecule Marc Gordon (Sat Sep 15 2012 - 07:15:28 CDT)
- ERROR) Unable to change color name Teich-McGoldrick, Stephanie (Fri Sep 14 2012 - 16:40:04 CDT)
- Hello rainy908_at_yahoo.com (Fri Sep 14 2012 - 04:17:41 CDT)
- Hi rainy908_at_yahoo.com (Fri Sep 14 2012 - 02:48:50 CDT)
- problem showing lammps dump files luoyuan Q (Thu Sep 13 2012 - 21:18:29 CDT)
- Duplicate option in fftk ehsan zahedinejad (Thu Sep 13 2012 - 18:53:39 CDT)
- (no subject) rainy908_at_yahoo.com (Wed Sep 12 2012 - 23:43:19 CDT)
- problem loading LAMMPS trajectory using VMD Li, Yanfei (Wed Sep 12 2012 - 22:50:20 CDT)
- (no subject) rainy908_at_yahoo.com (Wed Sep 12 2012 - 14:05:37 CDT)
- (no subject) rainy908 (Wed Sep 12 2012 - 11:55:53 CDT)
- MDFF and implicit solvent Gorka Lasso (Wed Sep 12 2012 - 10:54:01 CDT)
- (no subject) rainy908_at_yahoo.com (Tue Sep 11 2012 - 23:53:20 CDT)
- tutorial BIO MED (Tue Sep 11 2012 - 03:53:07 CDT)
- Protein line chain in water spehere Steven Neumann (Mon Sep 10 2012 - 09:45:42 CDT)
- SpaceNavigator: How can I grab a molecule? MVACKEL (Sat Sep 08 2012 - 08:59:35 CDT)
- Question about generating a .js file Ganesh Kamath (Fri Sep 07 2012 - 09:57:39 CDT)
- APBS automation with VMD Martin, Erik W (Fri Sep 07 2012 - 09:41:54 CDT)
- How to use the Grab (or Tug) Tool Marcos Ackel (Wed Sep 05 2012 - 14:10:09 CDT)
- Largest published IMD (interactive simulation) examples? Marc Baaden (Tue Sep 04 2012 - 12:02:10 CDT)
- Invitation to connect on LinkedIn Violina Sharma via LinkedIn (Tue Sep 04 2012 - 09:05:40 CDT)
- a basic question on binding energy 肖富贵 (Mon Sep 03 2012 - 08:51:01 CDT)
- Question about reflecting wall in NAMD Ganesh Kamath (Fri Aug 31 2012 - 09:21:29 CDT)
- NAMD 2.8 and PLUMED 1.3 candy deck (Thu Aug 30 2012 - 07:23:27 CDT)
- Text-mode VMD David Minh (Wed Aug 29 2012 - 13:17:18 CDT)
- Question regarding FEP parameters snoze pa (Wed Aug 29 2012 - 13:05:15 CDT)
- pbc wrap question Daniel Klose (Mon Aug 27 2012 - 03:22:04 CDT)
- Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda) Sam Wallace (Sun Aug 26 2012 - 06:52:39 CDT)
- Re: Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda) Axel Kohlmeyer (Sun Aug 26 2012 - 08:05:00 CDT)
- Re: Possible handle leak in 'measure gofr' VMD 1.9.1 Windows (no cuda) John Stone (Sun Aug 26 2012 - 21:33:39 CDT)
- Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Thu Aug 23 2012 - 21:01:05 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Wang Yi (Thu Aug 23 2012 - 21:57:27 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:34:20 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Thu Aug 23 2012 - 22:42:19 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Thu Aug 23 2012 - 22:47:39 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Mayne, Christopher G (Fri Aug 24 2012 - 08:52:15 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Fri Aug 24 2012 - 15:41:13 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Tue Sep 04 2012 - 15:59:30 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Fri Sep 07 2012 - 17:04:52 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Thu Sep 20 2012 - 16:57:27 CDT)
- RE: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Him Bandhu Upadhyay (Thu Aug 23 2012 - 22:44:30 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:47:10 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE John Stone (Fri Sep 21 2012 - 16:45:40 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:34:20 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Chris Harrison (Thu Aug 23 2012 - 22:00:46 CDT)
- Re: Regarding the latest VMD 1.9.2.alpha builds from BioCoRE Wang Yi (Thu Aug 23 2012 - 21:57:27 CDT)
- shift the molecules via VMD oguz gurbulak (Thu Aug 23 2012 - 05:11:18 CDT)
- RDF COM Bhanita Sharma (Thu Aug 23 2012 - 00:28:56 CDT)
- Error while running NAMD after using patch in psfgen Ganesh Kamath (Wed Aug 22 2012 - 15:16:14 CDT)
- obtaining the axis of a helix vitalini_at_zedat.fu-berlin.de (Wed Aug 22 2012 - 10:21:23 CDT)
- VolMap Tool coulombmsm - with periodic boundary conditions Bj鴕nar Jensen (Wed Aug 22 2012 - 06:19:08 CDT)
- (no subject) ragesh c (Wed Aug 22 2012 - 05:18:37 CDT)
- The err happens when movie maker Renderer POV-Ray javacfish (Wed Aug 22 2012 - 04:01:23 CDT)
- beta column in a multiseq sequences alignment Pablo Villalobos Navarro (Tue Aug 21 2012 - 18:21:07 CDT)
- Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Tue Aug 21 2012 - 11:06:01 CDT)
- Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Tue Aug 21 2012 - 12:02:06 CDT)
- Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Wed Aug 22 2012 - 04:41:21 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Wed Aug 22 2012 - 09:34:30 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Wed Aug 22 2012 - 09:49:16 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Wed Aug 22 2012 - 10:12:30 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Wed Aug 22 2012 - 10:16:36 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Thu Aug 23 2012 - 03:00:56 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Thu Aug 23 2012 - 07:24:39 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Thu Aug 23 2012 - 09:41:42 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Fri Aug 24 2012 - 07:15:31 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Fri Aug 24 2012 - 09:51:53 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 Vlad Cojocaru (Fri Aug 24 2012 - 10:09:25 CDT)
- Re: Re: Error building VMD plugins from CVS 21.08.2012 John Stone (Wed Aug 22 2012 - 09:34:30 CDT)
- main menu rests to top molecule after each double click in a list of molecules Vlad Cojocaru (Tue Aug 21 2012 - 10:14:38 CDT)
- writing a psf with bonds Joaquim Rui de Castro Rodrigues (Mon Aug 20 2012 - 14:13:34 CDT)
- FLTK fonts GUIXA GONZALEZ, RAMON (Sun Aug 19 2012 - 09:26:24 CDT)
- CHARMM36 topology files, AutoPSF and DNA Law, Yu Kay (Fri Aug 17 2012 - 10:20:26 CDT)
- multiple residues with same resid and problem with solvation using VMD AnkiReddy katha (Fri Aug 17 2012 - 06:36:59 CDT)
- select grafted chains in nanoparticle simao.pereira_at_di3.units.it (Thu Aug 16 2012 - 11:04:47 CDT)
- how to get interaction energy bond.james (Wed Aug 15 2012 - 07:50:11 CDT)
- how to get interaction energy bond.james (Wed Aug 15 2012 - 06:04:29 CDT)
- Cartesian coordinates to polar coordinates Ganesh Kamath (Tue Aug 14 2012 - 17:20:30 CDT)
- VMD 1.9.1 on Macosx Snow Leopard: items greyed out Passerone, Daniele (Tue Aug 14 2012 - 04:14:17 CDT)
- creating a modified pdb/psf file Sean T Kigerl (Tue Aug 14 2012 - 00:43:26 CDT)
- Failure getting correct charge on the system Francesco Pietra (Mon Aug 13 2012 - 02:34:56 CDT)
- pleaseme help how to build Metal ion topology file conneted aramice Malkhasian (Sat Aug 11 2012 - 01:50:05 CDT)
- long bonds in surface structure is not shown in vmd !? Fatemesadat Emami (Fri Aug 10 2012 - 19:28:42 CDT)
- how add new plugin to vmd hamid mosaddeghi (Fri Aug 10 2012 - 15:17:20 CDT)
- RMSF plugin to share flavio seixas (Fri Aug 10 2012 - 11:37:42 CDT)
- SASA Algorithm?? Jeremy Lucid (Fri Aug 10 2012 - 04:46:27 CDT)
- convert dcd to coordinate, each frame, conserving the identity fabrizio.benedetti_at_unil.ch (Fri Aug 10 2012 - 02:23:30 CDT)
- Convert CHARMM psf to X-PLOR Monika Madhavi (Fri Aug 10 2012 - 01:04:08 CDT)
- how to write topology for Metal in protein aramice Malkhasian (Thu Aug 09 2012 - 17:28:33 CDT)
- B-factor plugin flavio seixas (Thu Aug 09 2012 - 14:13:26 CDT)
- Selecting based on parameters from another file Nate Hurley (Thu Aug 09 2012 - 11:22:02 CDT)
- unique residue names Jim Kress (Thu Aug 09 2012 - 10:47:33 CDT)
- topology file for metal in the protein aramice Malkhasian (Thu Aug 09 2012 - 10:12:43 CDT)
- unique residue names Jim Kress (Thu Aug 09 2012 - 09:55:42 CDT)
- Showing frame number on display? Bryan Roessler (Wed Aug 08 2012 - 12:04:58 CDT)
- 3D projectors compatible with VMD. Diego Gomes (Tue Aug 07 2012 - 20:43:23 CDT)
- Creating surfaces with desired lengths- Inorganic Builder Monika Madhavi (Mon Aug 06 2012 - 23:26:37 CDT)
- ESPResSo Summer School Olaf Lenz (Mon Aug 06 2012 - 09:10:22 CDT)
- connect a spring between all the atoms present in pdb structure SONY kaur (Sat Aug 04 2012 - 04:31:42 CDT)
- Re: namd-l: How to create psf for graphene Monika Madhavi (Sat Aug 04 2012 - 01:04:24 CDT)
- problem with polygon file conversion to pdb Oliver Schmetzer (Fri Aug 03 2012 - 11:33:21 CDT)
- Setting molecule ColorID to values greater than 32 Nate Hurley (Thu Aug 02 2012 - 13:36:02 CDT)
- Creating psf file for graphene sheet Monika Madhavi (Thu Aug 02 2012 - 04:10:07 CDT)
- (no subject) DUCHER Roland (Thu Aug 02 2012 - 04:09:33 CDT)
- missing terminal residues while generating side chain atoms by psfgen MeiShan Lin (Wed Aug 01 2012 - 13:36:51 CDT)
- how to generate .pdb file of graphene in VMD(nanotube builder) ragesh c (Wed Aug 01 2012 - 04:45:23 CDT)
- VMD 1.9.1 python interpreter Carolyn Phillips (Tue Jul 31 2012 - 18:54:23 CDT)
- Loop through atoms in a molecule Gamot, Ritchie (Tue Jul 31 2012 - 06:51:52 CDT)
- SpaceNavigator on Win7 64 bit James Ryley (Mon Jul 30 2012 - 20:53:14 CDT)
- Question about H-bond plugin flavio seixas (Mon Jul 30 2012 - 15:36:06 CDT)
- Representation Selections Joshua Engelman (Mon Jul 30 2012 - 14:47:57 CDT)
- Minor error in VMD PSF parser for atom charges Tristan Croll (Sat Jul 28 2012 - 19:53:08 CDT)
- RE: possible problem with graphics rep gui under with large numbers of molecules Bennion, Brian (Fri Jul 27 2012 - 12:41:51 CDT)
- APBS plugin requires molecule renaming after drag and drop loading of .pqr file Christopher Neale (Thu Jul 26 2012 - 21:03:35 CDT)
- VMD compilation 64 bits Ivan Moncayo (Wed Jul 25 2012 - 12:03:49 CDT)
- Dowser files and manual Sebasti醤 Guti閞rez (Tue Jul 24 2012 - 18:50:37 CDT)
- attaching an arbitrary surface molecule to a nanopore Sean T Kigerl (Tue Jul 24 2012 - 14:25:06 CDT)
- Search options within mailing list Monika Madhavi (Tue Jul 24 2012 - 13:22:02 CDT)
- Charmm FF parameter file for 2-hydroxypyridine Him Bandhu Upadhyay (Tue Jul 24 2012 - 13:10:30 CDT)
- Re: FW: difficulty in viewing AMBER mdcrd files Mahendra B Thapa (Tue Jul 24 2012 - 12:38:00 CDT)
- Question about Drude polarizable model Ganesh Kamath (Tue Jul 24 2012 - 11:19:03 CDT)
- (no subject) Monika Madhavi (Tue Jul 24 2012 - 10:20:54 CDT)
- iOS support? Samuel Schlachter (Tue Jul 24 2012 - 09:59:51 CDT)
- Scripting API: are arguments to representation types documented somewhere? Jan-Philip Gehrcke (Tue Jul 24 2012 - 07:58:04 CDT)
- (no subject) Monika Madhavi (Tue Jul 24 2012 - 07:53:40 CDT)
- molefacture selection Reza Khalkhali (Tue Jul 24 2012 - 07:44:50 CDT)
- Generating PSF for 1JNO.pdb chain A Ramin Ekhteiari (Tue Jul 24 2012 - 06:57:42 CDT)
- converting Desmond trajectory and energy file to gromacs Nidhi Jatana (Tue Jul 24 2012 - 04:53:48 CDT)
- vmd 1.9.1 Centos oguz gurbulak (Tue Jul 24 2012 - 04:12:29 CDT)
- VolMap. mass weighted densities raunest (Tue Jul 24 2012 - 04:05:43 CDT)
- (no subject) Monika Madhavi (Mon Jul 23 2012 - 13:51:19 CDT)
- (no subject) Monika Madhavi (Mon Jul 23 2012 - 09:04:15 CDT)
- Problem with Reading GROMACS file in VMD satya kumar (Sun Jul 22 2012 - 22:06:42 CDT)
- Re: Problem with Reading GROMACS file in VMD Axel Kohlmeyer (Sun Jul 22 2012 - 23:46:35 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Mon Jul 23 2012 - 12:24:20 CDT)
- Re: Problem with Reading GROMACS file in VMD Axel Kohlmeyer (Mon Jul 23 2012 - 12:42:50 CDT)
- Re: Problem with Reading GROMACS file in VMD John Stone (Mon Jul 23 2012 - 14:12:02 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 04:02:59 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 06:49:55 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 07:11:04 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 07:21:24 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 08:19:48 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 11:39:55 CDT)
- Re: Problem with Reading GROMACS file in VMD Bogdan Costescu (Tue Jul 24 2012 - 11:42:02 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 11:46:07 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Fri Jul 27 2012 - 14:11:29 CDT)
- RE: Problem with Reading GROMACS file in VMD Jim Kress (Tue Jul 24 2012 - 09:09:37 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Tue Jul 24 2012 - 10:11:19 CDT)
- Re: Problem with Reading GROMACS file in VMD John Stone (Tue Jul 31 2012 - 11:23:19 CDT)
- Re: Problem with Reading GROMACS file in VMD satya kumar (Mon Jul 23 2012 - 12:24:20 CDT)
- Re: Problem with Reading GROMACS file in VMD Axel Kohlmeyer (Sun Jul 22 2012 - 23:46:35 CDT)
- Python plans Caio Silva Souza (Sat Jul 21 2012 - 18:47:13 CDT)
- Re: Python plans John Stone (Tue Jul 24 2012 - 11:48:52 CDT)
- Re: Python plans Olaf Lenz (Wed Jul 25 2012 - 03:07:49 CDT)
- Re: Python plans Caio Silva Souza (Thu Jul 26 2012 - 14:40:40 CDT)
- Re: Python plans Olaf Lenz (Fri Jul 27 2012 - 01:36:50 CDT)
- Re: Python plans Axel Kohlmeyer (Fri Jul 27 2012 - 02:39:48 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 11:32:07 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 11:26:23 CDT)
- Re: Python plans Caio Silva Souza (Fri Jul 27 2012 - 12:19:07 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 12:30:16 CDT)
- Re: Python plans Caio Silva Souza (Fri Jul 27 2012 - 12:46:27 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 12:51:58 CDT)
- Re: Python plans John Stone (Fri Jul 27 2012 - 11:25:26 CDT)
- Re: Python plans John Stone (Wed Aug 01 2012 - 10:46:26 CDT)
- Re: Python plans Olaf Lenz (Wed Jul 25 2012 - 03:07:49 CDT)
- Re: Python plans John Stone (Tue Jul 24 2012 - 11:48:52 CDT)
- RE: Joining DCD files with overlapping frames amin_at_imtech.res.in (Fri Jul 20 2012 - 05:21:58 CDT)
- RE: Joining DCD files with overlapping frames. JC Gumbart (Fri Jul 20 2012 - 01:40:50 CDT)
- Joining DCD files with overlapping frames. amin_at_imtech.res.in (Thu Jul 19 2012 - 21:53:08 CDT)
- VMD's superposition algorithm V韈tor (Thu Jul 19 2012 - 05:06:29 CDT)
- constant velocity for carbon nanotubes bond.james (Wed Jul 18 2012 - 21:38:48 CDT)
- namdEnergy doesn't run on clusters Wang Yi (Tue Jul 17 2012 - 22:28:06 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 09:46:30 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:47:17 CDT)
- Re: namdEnergy doesn't run on clusters Wang Yi (Wed Jul 18 2012 - 09:55:37 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:04:01 CDT)
- Re: namdEnergy doesn't run on clusters Wang Yi (Wed Jul 18 2012 - 10:17:52 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:23:49 CDT)
- Re: namdEnergy doesn't run on clusters Wang Yi (Wed Jul 18 2012 - 10:31:17 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 10:36:23 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 12:37:35 CDT)
- Re: namdEnergy doesn't run on clusters John Stone (Wed Jul 18 2012 - 09:46:30 CDT)
- periodic bonds in vmd Fatemesadat Emami (Tue Jul 17 2012 - 13:10:59 CDT)
- H-H dynamic bonds DESPIAU-PUJO Emilie UJF (Tue Jul 17 2012 - 09:58:31 CDT)
- IMD selections Thomas C. Bishop (Mon Jul 16 2012 - 10:25:05 CDT)
- problem generating psf file Ginger Emel (Fri Jul 13 2012 - 11:22:50 CDT)
- how to change color of the one type of atom niaz poorgholami (Fri Jul 13 2012 - 08:15:42 CDT)
- Building a beta barrel using a beta hairpin Diego Granados (Thu Jul 12 2012 - 17:27:43 CDT)
- Re: namd-l: Re: vmd installation problem Axel Kohlmeyer (Thu Jul 12 2012 - 01:53:15 CDT)
- vmd installation problem oguz gurbulak (Wed Jul 11 2012 - 09:54:16 CDT)
- fftk: domain error: argument not in valid range 肖富贵 (Tue Jul 10 2012 - 03:30:31 CDT)
- psfgen, mutate, and multiple chains Andrea Kirkpatrick (Mon Jul 09 2012 - 17:31:35 CDT)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 22-26, 2012 in Urbana, Illinois David Brandon (Mon Jul 09 2012 - 14:32:25 CDT)
- Distance constraints satya kumar (Fri Jul 06 2012 - 18:34:20 CDT)
- Re: Distance constraints Axel Kohlmeyer (Fri Jul 06 2012 - 23:05:45 CDT)
- Re: Distance constraints Suresh (Fri Jul 06 2012 - 23:33:01 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 08:15:51 CDT)
- Re: Distance constraints John Stone (Mon Jul 09 2012 - 10:08:34 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 10:16:58 CDT)
- Re: Distance constraints John Stone (Mon Jul 09 2012 - 11:31:39 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 14:30:27 CDT)
- Re: Distance constraints satya kumar (Mon Jul 09 2012 - 15:35:44 CDT)
- Re: Distance constraints Axel Kohlmeyer (Fri Jul 06 2012 - 23:05:45 CDT)
- Secondary Structure Issue Sarah Richards (Fri Jul 06 2012 - 08:16:04 CDT)
- Building unit cell from asymmetric unit Sebasti醤 Guti閞rez (Wed Jul 04 2012 - 17:16:32 CDT)
- about analysis plugin oguz gurbulak (Wed Jul 04 2012 - 09:40:30 CDT)
- Problem with psfgen and Drude Polarizable Force Field Roman Shevchuk (Wed Jul 04 2012 - 06:42:06 CDT)
- 3D visualization options on Linux boxes Vikas Varshney (Tue Jul 03 2012 - 11:37:48 CDT)
- 3d space navigator and MacosX-vmd Passerone, Daniele (Mon Jul 02 2012 - 22:08:28 CDT)
- Problem with tachyon Fatemesadat Emami (Mon Jul 02 2012 - 16:25:43 CDT)
- difficulty in viewing AMBER mdcrd files Mahendra B Thapa (Mon Jul 02 2012 - 11:56:43 CDT)
- volmap 刘金峰 (Sun Jul 01 2012 - 09:01:33 CDT)
- remove a selection in vmd? Fatemesadat Emami (Sat Jun 30 2012 - 21:50:36 CDT)
- pore radius measurement Raul Araya (Fri Jun 29 2012 - 13:50:00 CDT)
- VMD selection: change atom size across various frames Wolf Dapp (Fri Jun 29 2012 - 08:57:04 CDT)
- bug of VMD Albert (Fri Jun 29 2012 - 03:40:15 CDT)
- problem with pbc wrap Dian Jiao (Thu Jun 28 2012 - 13:46:00 CDT)
- Isosurfaces and volume slices FX (Thu Jun 28 2012 - 08:22:29 CDT)
- DX potential files Abolfazl Bayat (Thu Jun 28 2012 - 04:10:23 CDT)
- Building a membrane Vince Cho (Wed Jun 27 2012 - 23:03:54 CDT)
- how to calculate water density in the 'hole'? Albert (Wed Jun 27 2012 - 13:26:01 CDT)
- Python script to fix autoionize issues related to long atom type names Evgeny Bulat (Tue Jun 26 2012 - 16:42:37 CDT)
- TkConsole functions Fatemesadat Emami (Tue Jun 26 2012 - 14:38:16 CDT)
- computing potential using pmepot Abolfazl Bayat (Mon Jun 25 2012 - 11:16:49 CDT)
- Force Field ToolKit and QM codes other than Gaussian MOHAMMAD JAVAD AGHAEI (Mon Jun 25 2012 - 02:05:41 CDT)
- dump to vmd Ramin Ekhteiari (Sun Jun 24 2012 - 04:19:57 CDT)
- Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 10:01:38 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 11:44:18 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 11:53:33 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 11:54:15 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 11:59:59 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 12:04:04 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 12:13:06 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 12:30:56 CDT)
- Re: Running ProcupinePlot script Ban Arn (Mon Jun 25 2012 - 04:16:28 CDT)
- Re: Running ProcupinePlot script Ban Arn (Fri Jun 22 2012 - 11:53:33 CDT)
- Re: Running ProcupinePlot script John Stone (Fri Jun 22 2012 - 11:44:18 CDT)
- patch SAM in psfgen flavio seixas (Fri Jun 22 2012 - 09:37:17 CDT)
- generating psf files for bicarbonate Traci Clymer (Fri Jun 22 2012 - 09:13:36 CDT)
- VMD NMWiz plugin Ban Arn (Thu Jun 21 2012 - 11:16:08 CDT)
- Workshop for Computational Chemistry and Physics MARK PLUMMER (Wed Jun 20 2012 - 15:20:40 CDT)
- changing font size Shyno Mathew (Tue Jun 19 2012 - 16:44:13 CDT)
- Bond angle distribution Prof. Eddie (Tue Jun 19 2012 - 13:49:33 CDT)
- PMEpot plugin Abolfazl Bayat (Tue Jun 19 2012 - 11:43:42 CDT)
- Getting the internal coordinates table Ajasja Ljubeti膷 (Mon Jun 18 2012 - 04:11:03 CDT)
- fix the viewing angles XY (Mon Jun 18 2012 - 00:29:56 CDT)
- Changing the color of atoms of a particular name Andrew DeYoung (Sat Jun 16 2012 - 18:50:47 CDT)
- SBCG Bond/Angle Parameter Extraction Files Tye Dwight Martin (Fri Jun 15 2012 - 17:28:59 CDT)
- difference in angles and dihedral between psf files Raul Araya (Thu Jun 14 2012 - 10:02:58 CDT)
- scripting bond labeling Prof. Eddie (Wed Jun 13 2012 - 16:44:18 CDT)
- VMD for rectifying oxygen atoms ? Marc H鰉berger (Wed Jun 13 2012 - 09:53:31 CDT)
- VMD 1.9 installation on linux Shyno Mathew (Wed Jun 13 2012 - 08:09:43 CDT)
- Problems with analysis tools INPE (Ingrid Viveka Pettersson) (Wed Jun 13 2012 - 07:05:30 CDT)
- Using psfgen with long atom names (How to prepare PDB file?) Ajasja Ljubeti膷 (Wed Jun 13 2012 - 05:33:27 CDT)
- The "gopython" is wrong on the Lunux VMD1.9.1 javacfish (Wed Jun 13 2012 - 01:21:59 CDT)
- wrapall visualization Prof. Eddie (Tue Jun 12 2012 - 12:03:39 CDT)
- Workshop - Computational Molecular Physics of Non-Bonded Bio-Molecular Interactions MARK PLUMMER (Mon Jun 11 2012 - 17:16:47 CDT)
- (no subject) Francesco Pietra (Sun Jun 10 2012 - 12:45:22 CDT)
- hbond Subrata Paul (Sat Jun 09 2012 - 06:27:34 CDT)
- Finding the Number of Chains Present via Scripting Nate Hurley (Fri Jun 08 2012 - 11:19:12 CDT)
- unwrapping long trajectories Edward Lyman (Fri Jun 08 2012 - 10:09:48 CDT)
- problem vmd python Tom King (Wed Jun 06 2012 - 08:20:09 CDT)
- namd/vmd support to GTX-6## series Francesco Pietra (Wed Jun 06 2012 - 03:43:38 CDT)
- VMD Psfgen issue Evgeny Bulat (Tue Jun 05 2012 - 12:55:53 CDT)
- Changing alphanumeric atom naming scheme to numeric Bryan Roessler (Tue Jun 05 2012 - 12:07:15 CDT)
- Segmentation fault (core dumped) arun kumar (Tue Jun 05 2012 - 09:01:03 CDT)
- Re: Segmentation fault (core dumped) John Stone (Tue Jun 05 2012 - 09:38:28 CDT)
- Re: Segmentation fault (core dumped) Axel Kohlmeyer (Tue Jun 05 2012 - 10:09:48 CDT)
- FFTK VMD plugin issue (arising from VECSCALE TCL issues of either NAMD or VMD ?) Francesco Pietra (Tue Jun 05 2012 - 02:16:40 CDT)
- Workshop In Aspen Colorado - MARK PLUMMER (Mon Jun 04 2012 - 15:15:32 CDT)
- FFTK OptCharges Francesco Pietra (Mon Jun 04 2012 - 04:10:40 CDT)
- Strange results when visualizing .trr trajectory patrick wintrode (Sat Jun 02 2012 - 11:41:04 CDT)
- Re: hbonds vs time JC Gumbart (Thu May 31 2012 - 15:09:06 CDT)
- (no subject) Marc Charendoff (Thu May 31 2012 - 12:09:44 CDT)
- hbonds vs time Subrata Paul (Thu May 31 2012 - 10:40:13 CDT)
- Drawing an ellipsoid bsnmrem-obj_at_yahoo.com (Thu May 31 2012 - 08:44:33 CDT)
- VMD membrane builder P.-L. Chau (Thu May 31 2012 - 07:03:34 CDT)
- Problem in making IMD connection prakhar gupta (Thu May 31 2012 - 05:57:27 CDT)
- anybody interested in running VMD in parallel (without recompiling)? Axel Kohlmeyer (Wed May 30 2012 - 19:40:45 CDT)
- questions for trajectory analysis oguz gurbulak (Wed May 30 2012 - 01:44:59 CDT)
- Quick Surf Representation Getting Cutoff when Rendering with Tachyon Robert Johnson (Tue May 29 2012 - 14:11:52 CDT)
- Flickering display when running remotely Clarinet (Tue May 29 2012 - 10:43:52 CDT)
- FFTK for adjusting partial charge only Francesco Pietra (Tue May 29 2012 - 10:29:53 CDT)
- VMD 1.9.1 becomes unresponsive Jim Kress (Sat May 26 2012 - 15:47:08 CDT)
- Another thought related to drawing dipole moment vectors Andrew DeYoung (Sat May 26 2012 - 12:27:53 CDT)
- Re: Another thought related to drawing dipole moment vectors Wang Yi (Sat May 26 2012 - 14:27:25 CDT)
- Re: Another thought related to drawing dipole moment vectors Axel Kohlmeyer (Sat May 26 2012 - 16:22:55 CDT)
- Re: Another thought related to drawing dipole moment vectors Bogdan Costescu (Sun May 27 2012 - 07:10:12 CDT)
- Using Dipole Moment Watcher with Gromacs configurations and trajectories Andrew DeYoung (Sat May 26 2012 - 12:20:09 CDT)
- Re: vmd ATI card John Stone (Fri May 25 2012 - 13:05:20 CDT)
- Movie making with smoothed trajectories Jim Kress (Thu May 24 2012 - 11:02:18 CDT)
- TR: VMD atomselect with cartesian reference peter.schmidtke_at_fr.netgrs.com (Thu May 24 2012 - 08:16:55 CDT)
- Hydrogen bond energy calculation Aditya Padhi (Wed May 23 2012 - 22:56:10 CDT)
- 7th Industrial Fluid Properties Simulation Challenge Joshua D. Moore (Wed May 23 2012 - 11:22:23 CDT)
- Regarding the Use of STL Files as Boundary Features Phelan Jr, Frederick R. Dr. (Wed May 23 2012 - 11:05:46 CDT)
- pbc-box mohammad agha (Wed May 23 2012 - 10:31:08 CDT)
- vmd on Ubuntu: tcl howto Eros Albertazzi (Wed May 23 2012 - 05:37:57 CDT)
- Aspen Center for Physics 2013 Workshop MARK PLUMMER (Tue May 22 2012 - 14:58:42 CDT)
- Polymer Building in VMD Gkourmpis, Thomas (Tue May 22 2012 - 08:21:12 CDT)
- Fw: pbc-box mohammad agha (Mon May 21 2012 - 23:30:38 CDT)
- RMSF and bigdcd Raul Araya (Mon May 21 2012 - 09:39:45 CDT)
- FFTK plugin: in which order should the components be run? Francesco Pietra (Mon May 21 2012 - 04:20:58 CDT)
- pbc-box mohammad agha (Sat May 19 2012 - 08:02:59 CDT)
- cg_bonds.tcl mohammad agha (Sat May 19 2012 - 00:32:37 CDT)
- libGLU.so missing? Fatemesadat Emami (Fri May 18 2012 - 18:55:21 CDT)
- Waters enclosed in internal cavities Wendy Gonz醠ez (Fri May 18 2012 - 04:46:53 CDT)
- file splitting P.-L. Chau (Thu May 17 2012 - 03:19:50 CDT)
- how to calculate PBC box volume in VMD? Albert (Thu May 17 2012 - 01:26:36 CDT)
- Docking protein-protein vladanstefanovic_at_kg.ac.rs (Wed May 16 2012 - 16:08:22 CDT)
- panel missing! Reza Khalkhali (Wed May 16 2012 - 10:49:51 CDT)
- Getting PSF in right format from .gro file Donovan B.T. (Wed May 16 2012 - 08:54:59 CDT)
- Making only a subset of atoms transparent (or otherwise non-emphasized) Andrew DeYoung (Tue May 15 2012 - 12:49:22 CDT)
- APBS for small molecules jcorradi_at_criba.edu.ar (Sun May 13 2012 - 22:00:08 CDT)
- Suggestion for measure cluster J閞鬽e H閚in (Fri May 11 2012 - 04:32:39 CDT)
- Loop for Andr閟 Morales (Thu May 10 2012 - 18:40:58 CDT)
- VMD1.9.1 is crashing my system mpincu (Thu May 10 2012 - 16:24:27 CDT)
- Clustering plugin updated to v2.0 Luis Gracia (Thu May 10 2012 - 12:54:20 CDT)
- PBC missed in Amber MD Albert (Thu May 10 2012 - 02:53:00 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 02:00:37 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 01:56:22 CDT)
- New crystallography plugin Dan Michael O. Hegg酶 (Wed May 09 2012 - 17:33:04 CDT)
- New crystallography plugin Dan Michael O. Hegg酶 (Wed May 09 2012 - 16:31:33 CDT)
- Add-H for crystallization water only Francesco Pietra (Wed May 09 2012 - 15:08:09 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 12:26:10 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 11:16:02 CDT)
- flashing the VMD mohammad agha (Tue May 08 2012 - 14:52:53 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:07:24 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Wed May 09 2012 - 11:01:54 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 10:11:38 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:24:58 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:26:50 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 10:30:23 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 11:07:23 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 11:13:43 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 12:24:53 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 13:17:42 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 01:42:43 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- counting specific atom types winardi, erik (Tue May 08 2012 - 08:37:01 CDT)
- diffusion coefficient plug-in in VMD fariba taghavi (Tue May 08 2012 - 07:06:31 CDT)
- flashing the VMD mohammad agha (Tue May 08 2012 - 05:18:04 CDT)
- flasshing the VMD mohammad agha (Mon May 07 2012 - 21:13:43 CDT)
- strange coloring Wei Chen (Mon May 07 2012 - 15:17:21 CDT)
- .trr files slow to load patrick wintrode (Mon May 07 2012 - 12:00:19 CDT)
- what's the Letter in figure caption meaning of TIME-LINE 2nd structure present? Albert (Mon May 07 2012 - 10:07:43 CDT)
- Fwd: VMD Stereo does not work Quadbufferd Christian Wohlschlager (Mon May 07 2012 - 02:46:23 CDT)
- %-sign shortcut for mouse->force->atom not working Christopher Neale (Sun May 06 2012 - 12:21:38 CDT)
- Save/restore display parameters J閞鬽e H閚in (Fri May 04 2012 - 09:51:28 CDT)
- gromacs trajectory file ahmet y齦d齬齧 (Thu May 03 2012 - 01:49:13 CDT)
- N-methylated amino acid topologies Joakim Swedberg (Wed May 02 2012 - 19:20:41 CDT)
- Free software for building peptide meisam valizadeh kiamahalleh (Wed May 02 2012 - 01:34:20 CDT)
- Problem with moving protein for all frames g鰇鏴 ay㧐 g黺en (Tue May 01 2012 - 16:14:24 CDT)
- Make "Load all at once" the default? Adding representations? Heather Mayes (Tue May 01 2012 - 15:45:39 CDT)
- helical content script Ban Arn (Tue May 01 2012 - 05:55:51 CDT)
- visualization of HOMO&LUMO in vmd leila karami (Tue May 01 2012 - 04:26:06 CDT)
- 3D density in the specific part of the simulation box fariba taghavi (Tue May 01 2012 - 00:48:35 CDT)
- In-Residence Training at the Theoretical & Computational Biophysics Group, July 16-27, 2012 TCBG Workshop (Mon Apr 30 2012 - 17:02:14 CDT)
- how to use the AutoIMD "Tool control" panel. Christopher Neale (Mon Apr 30 2012 - 11:28:19 CDT)
- writing pair/bond/angle/dihedral information for lammps input winardi, erik (Sun Apr 29 2012 - 17:17:14 CDT)
- Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 14:39:52 CDT)
- RE: Force Field ToolKit - Angles JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- RE: Force Field ToolKit - Angles Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- RE: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:58:39 CDT)
- Re: Force Field ToolKit - Angles Wang Yi (Sun Apr 29 2012 - 19:56:10 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 15:22:42 CDT)
- Re: Force Field ToolKit - Angles JC Gumbart (Mon Apr 30 2012 - 15:26:07 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:20:54 CDT)
- Re: Force Field ToolKit - Angles Mayne, Christopher G (Mon Apr 30 2012 - 20:15:21 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:22:37 CDT)
- RE: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 19:29:33 CDT)
- RE: Force Field ToolKit - Angles Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- RE: Force Field ToolKit - Angles JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- Force Field Toolkit: scaling, weight etc DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 06:37:04 CDT)
- measure gofr script Emiliano Ippoliti (Sat Apr 28 2012 - 08:51:58 CDT)
- water mean residence time jampani srinivas (Fri Apr 27 2012 - 17:23:53 CDT)
- PSF generation for proteins with isopeptide bonds Zack Scholl (Thu Apr 26 2012 - 19:57:48 CDT)
- VMD Stereo not work Christian Wohlschlager (Thu Apr 26 2012 - 08:32:48 CDT)
- Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 04:42:40 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 11:55:08 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 12:26:50 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Thu Apr 26 2012 - 13:27:45 CDT)
- RE: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 23:34:55 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Fri Apr 27 2012 - 09:23:34 CDT)
- Re: Problem with generating psf using CGENFF Ahmet Bakan (Fri Apr 27 2012 - 11:27:08 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Fri Apr 27 2012 - 11:57:18 CDT)
- Re: Problem with generating psf using CGENFF Axel Kohlmeyer (Thu Apr 26 2012 - 12:41:38 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 13:00:01 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Re:Problem with generating psf using CGENFF amin_at_imtech.res.in (Fri Apr 27 2012 - 22:35:16 CDT)
- Re:Problem with generating psf using CGENFF amin_at_imtech.res.in (Fri Apr 27 2012 - 22:46:21 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- VMD Question: How to build a polymer in VMD? Gkourmpis, Thomas (Thu Apr 26 2012 - 03:51:45 CDT)
- how to center protein? Chirag Vora (Tue Apr 24 2012 - 00:04:09 CDT)
- H-H dynamic bonds Q=A3ukasz_Pi=EAko=B6=22?= (Mon Apr 23 2012 - 17:21:42 CDT)
- Hydrophobic mismatch script Ban Arn (Mon Apr 23 2012 - 04:08:28 CDT)
- Movie Plugin Engelman, Joshua (Sat Apr 21 2012 - 15:54:54 CDT)
- openGL x,y position Mayne, Christopher G (Sat Apr 21 2012 - 14:01:51 CDT)
- HOOMD problems Engelman, Joshua (Fri Apr 20 2012 - 15:35:52 CDT)
- stereo images for publication Vlad Cojocaru (Fri Apr 20 2012 - 09:59:21 CDT)
- Anaglyph stereo with other colors Luis M. S醤chez (Fri Apr 20 2012 - 08:09:19 CDT)
- Re: Anaglyph stereo with other colors John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- Re: Anaglyph stereo with other colors flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: Anaglyph stereo with other colors Luis M. S醤chez (Sat Apr 21 2012 - 16:56:32 CDT)
- Re: Anaglyph stereo with other colors John Stone (Mon Apr 23 2012 - 15:49:37 CDT)
- Anaglyph stereo with other colors Luis M. S醤chez (Fri May 04 2012 - 09:45:34 CDT)
- Re: Anaglyph stereo with other colors John Stone (Mon Apr 23 2012 - 15:40:19 CDT)
- Re: Anaglyph stereo with other colors flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: Anaglyph stereo with other colors John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- gofr limit, Kirkwood-Buff integrals Ivan Vyalov (Fri Apr 20 2012 - 05:43:18 CDT)
- AutoPSF Donovan B.T. (Fri Apr 20 2012 - 04:29:53 CDT)
- Re: Thickness of bilayer script Andr閟 Morales (Thu Apr 19 2012 - 20:58:35 CDT)
- segmentation fault with NAMDenergy amin_at_imtech.res.in (Thu Apr 19 2012 - 20:12:53 CDT)
- Problem with hydration script Bryan Roessler (Thu Apr 19 2012 - 13:17:39 CDT)
- Valence bond force field in NAMD Ganesh Kamath (Thu Apr 19 2012 - 09:26:35 CDT)
- Units of Isovalue Slider in Isovalue Drawing Method Andrew DeYoung (Wed Apr 18 2012 - 20:08:53 CDT)
- Average pocket size? patrick wintrode (Wed Apr 18 2012 - 11:45:04 CDT)
- Saving coordinates that meet selection criteria for each frame Ben Rodriguez (Tue Apr 17 2012 - 18:28:43 CDT)
- Misfunction of some plugins if compiled Vlastimil Z铆ma (Tue Apr 17 2012 - 12:28:10 CDT)
- Saving of pdb-trajectory in NMR-like format James Starlight (Tue Apr 17 2012 - 09:21:40 CDT)
- Using Measure SASA in NAMD Simulation Ajith Rathnaweera Rajapaksha Mudalige (Mon Apr 16 2012 - 18:54:32 CDT)
- lipid order parameter Ban Arn (Mon Apr 16 2012 - 05:16:31 CDT)
- align electron density map onto simulated structure (with different center) Magnus Andersson (Sun Apr 15 2012 - 18:42:21 CDT)
- Dynamical Network Analysis programs gncommunities and subopt elena ermakova (Sat Apr 14 2012 - 01:40:33 CDT)
- Is it possible to save the position and angle of the camera for future VMD sessions? Andrew DeYoung (Fri Apr 13 2012 - 13:07:20 CDT)
- Default representation style in command line Paulo E. Abreu (Fri Apr 13 2012 - 06:10:43 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Apr 12 2012 - 20:54:30 CDT)
- Drawing a high resolution transparent or translucent sphere Andrew DeYoung (Wed Apr 11 2012 - 20:37:20 CDT)
- saving dcd file different if by script or by interactive mode Jose Borreguero (Tue Apr 10 2012 - 17:32:11 CDT)
- topotools writelammps data winardi, erik (Tue Apr 10 2012 - 17:24:48 CDT)
- Problems with for loop Andr閟 Morales (Tue Apr 10 2012 - 11:43:10 CDT)
- VMD QUESTION( Movie making ) james Fernandez (Mon Apr 09 2012 - 16:49:21 CDT)
- Average angle between the lipid dipole vector and the bilayer normal. Andr閟 Morales (Mon Apr 09 2012 - 12:45:44 CDT)
- Re: problems with MDFF Gregorio Fernandez (Mon Apr 09 2012 - 06:21:33 CDT)
- IMD - remove forces on mouse release jonathan KHAO (Sun Apr 08 2012 - 13:05:45 CDT)
- Mac OS compilation what could be going wrongQ?= FX (Sun Apr 08 2012 - 12:03:42 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Mon Apr 09 2012 - 14:06:06 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Tue Apr 10 2012 - 03:50:32 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 10:51:01 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 11:57:08 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 11:58:36 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 14:15:59 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 14:25:47 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 14:33:34 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Mon Apr 09 2012 - 14:06:06 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
- an old question Albert (Sat Apr 07 2012 - 00:28:29 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- Re: an old question Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 23:49:11 CDT)
- Re: an old question Albert (Tue Apr 10 2012 - 00:08:23 CDT)
- Re: an old question John Stone (Tue Apr 10 2012 - 14:11:51 CDT)
- Re: an old question Albert (Tue Apr 10 2012 - 14:23:16 CDT)
- Re: an old question PAUL NEWMAN (Tue Apr 10 2012 - 16:22:09 CDT)
- Re: an old question John Stone (Wed Apr 11 2012 - 13:57:49 CDT)
- Re: an old question Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- problems with MDFF Gregorio Fernandez (Fri Apr 06 2012 - 02:42:22 CDT)
- Lipid order paramaeter script Ban Arn (Thu Apr 05 2012 - 04:35:52 CDT)
- Regarding saving data snoze pa (Wed Apr 04 2012 - 12:21:39 CDT)
- using min. image. conven. for transport properties Papan S (Wed Apr 04 2012 - 08:16:00 CDT)
- Auto Bead Display Size using topotools Phelan Jr, Frederick R. Dr. (Mon Apr 02 2012 - 14:50:47 CDT)
- python error? Albert (Mon Apr 02 2012 - 11:28:14 CDT)
- psfgen tyrosine anion-Fe bond Francesco Pietra (Sun Apr 01 2012 - 09:53:13 CDT)
- FW: How to set VMD_Plugin_path? a a (Sat Mar 31 2012 - 23:25:30 CDT)
- Printing Coordinates with Tcl/Tk Mr Bernard Ramos (Fri Mar 30 2012 - 12:16:00 CDT)
- Plotting of Co-ordinates on VMD james Fernandez (Fri Mar 30 2012 - 11:37:07 CDT)
- bondsrecalc question Denis Davydov (Fri Mar 30 2012 - 11:10:14 CDT)
- Dynamically displaying the length of hydrogen bonds Andrew DeYoung (Fri Mar 30 2012 - 10:30:08 CDT)
- RE: Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 15:32:59 CDT)
- Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 14:31:58 CDT)
- Possible MPI code problem (and fix) Christoph Willing (Thu Mar 29 2012 - 07:30:12 CDT)
- kill source'd tcl script Philippe Bopp / temporary (Wed Mar 28 2012 - 03:37:12 CDT)
- Can't set graphics window position to 0,0 Christoph Willing (Tue Mar 27 2012 - 18:17:10 CDT)
- secondary structure calculation Ban Arn (Tue Mar 27 2012 - 11:55:24 CDT)
- COORDINATES extraction of molecule's centers of mass VladanStefanovic_at_kg.ac.rs (Tue Mar 27 2012 - 01:37:23 CDT)
- autopsf: can't read "logfilename" Francesco Pietra (Sat Mar 24 2012 - 11:46:15 CDT)
- (no subject) rainy908_at_yahoo.com (Fri Mar 23 2012 - 07:55:48 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Mar 22 2012 - 17:42:38 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Mar 22 2012 - 15:06:33 CDT)
- adding patches via autopsf Bennion, Brian (Wed Mar 21 2012 - 11:34:47 CDT)
- starting tkcon mbcx7sa3_at_zedat.fu-berlin.de (Wed Mar 21 2012 - 10:17:30 CDT)
- solvent radius setyanto md (Tue Mar 20 2012 - 01:03:29 CDT)
- lib/stride/README Benjamin Kaduk (Mon Mar 19 2012 - 21:57:22 CDT)
- plugins/hesstrans/Makefile recurses on CXXFLAGS Benjamin Kaduk (Mon Mar 19 2012 - 21:42:36 CDT)
- Define "color Element" through rgb values Roger Nadler (Mon Mar 19 2012 - 11:47:14 CDT)
- bond cutoff Zhuyi Xue (Mon Mar 19 2012 - 08:45:34 CDT)
- RMSD George Tzotzos (Sun Mar 18 2012 - 06:47:36 CDT)
- turns, using Stride Neelanjana Sengupta (Sat Mar 17 2012 - 02:03:52 CDT)
- Simulations with alpha methylated amino acids amin_at_imtech.res.in (Wed Mar 14 2012 - 20:17:04 CDT)
- writepdb, wrong lines in output Francois Martz (Wed Mar 14 2012 - 12:15:22 CDT)
- Desmond Trajectory Files on the fly in VMD Hitesh Patel (Tue Mar 13 2012 - 05:13:34 CDT)
- tutorial on inorganic builder setyanto md (Tue Mar 13 2012 - 03:56:35 CDT)
- load propka3.1 results error Albert (Mon Mar 12 2012 - 15:24:37 CDT)
- how to configure PROPKA3 in VMD 1.91? Albert (Mon Mar 12 2012 - 15:11:39 CDT)
- Drawing the simulation box from a Gromacs trajectory Andrew DeYoung (Mon Mar 12 2012 - 12:43:23 CDT)
- Force field toolkit (ffTK) - problem of reading Gaussian log file Wang Yi (Sat Mar 10 2012 - 13:58:20 CST)
- Re: get avg ca distance Ana Celia Vila Verde (Fri Mar 09 2012 - 02:10:56 CST)
- VMD Display Error - Detected X11 'Composite' extension Shalabh Maroo (Thu Mar 08 2012 - 17:53:05 CST)
- get avg ca distance Murpholino Peligro (Thu Mar 08 2012 - 15:33:19 CST)
- positively charged portion of the protein surface Thomas Evangelidis (Thu Mar 08 2012 - 06:23:20 CST)
- Re: [AMBER] Viewing with VMD bonds set by the "bond" command Francesco Pietra (Thu Mar 08 2012 - 03:48:48 CST)
- namd2 unable to find bond. Dave Arias (NelsonDa) (Wed Mar 07 2012 - 14:58:39 CST)
- Memory used by VMD is much less than installed Meyer-Almes, Franz-Josef, Prof. Dr. (Wed Mar 07 2012 - 05:03:08 CST)
- rmsf to b-factor conversion abinayar_at_imsc.res.in (Wed Mar 07 2012 - 04:06:29 CST)
- Individual components of RMSD? patrick wintrode (Tue Mar 06 2012 - 11:36:44 CST)
- make movies with user-defined script lam nguyen (Mon Mar 05 2012 - 12:49:00 CST)
- Re: make movies with user-defined script John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- Re: make movies with user-defined script John Stone (Fri Mar 09 2012 - 16:27:43 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 17:31:35 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 18:34:18 CST)
- Re: make movies with user-defined script Axel Kohlmeyer (Fri Mar 09 2012 - 19:35:32 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 19:57:53 CST)
- Re: make movies with user-defined script John Stone (Fri Mar 09 2012 - 20:45:15 CST)
- Re: make movies with user-defined script lam nguyen (Sun Mar 11 2012 - 18:55:38 CDT)
- Re: make movies with user-defined script John Stone (Mon Mar 12 2012 - 15:53:06 CDT)
- Re: make movies with user-defined script lam nguyen (Mon Mar 12 2012 - 20:37:19 CDT)
- Re: make movies with user-defined script lam nguyen (Tue Mar 13 2012 - 16:23:17 CDT)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- Re: make movies with user-defined script John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- information regarding tcl script for cell volume changing with each frame siladitya mukherjee (Sat Mar 03 2012 - 13:50:09 CST)
- Bug in VMD main? Ahmet Bakan (Sat Mar 03 2012 - 12:25:05 CST)
- Re: Using VMD to plot coordination number of solvated ion v/s time Ana Celia Vila Verde (Fri Mar 02 2012 - 10:15:23 CST)
- Using VMD to plot coordination number of solvated ion v/s time skolev_at_mnet.bg (Fri Mar 02 2012 - 09:33:07 CST)
- exporting marching cubes data from QuickSurf Zhe Wu (Thu Mar 01 2012 - 21:40:11 CST)
- Calculating RDF from xyz file siladitya mukherjee (Thu Mar 01 2012 - 16:38:54 CST)
- measure sasa Aaron Oakley (Wed Feb 29 2012 - 17:50:08 CST)
- how to place a membrane protein with OPM ? Albert (Wed Feb 29 2012 - 15:33:44 CST)
- Adsorption VMD Tcl script error vladanstefanovic_at_kg.ac.rs (Wed Feb 29 2012 - 13:51:58 CST)
- Lipid order parameters Ganesh Kamath (Mon Feb 27 2012 - 14:21:13 CST)
- Problems with PSFGEN Dave Arias (NelsonDa) (Mon Feb 27 2012 - 13:18:07 CST)
- Plugins use after compilation question Anthony Cruz Balberdi (Mon Feb 27 2012 - 12:38:01 CST)
- How to change the python include and linkage path in configure script Haw-Zan Goh (Mon Feb 27 2012 - 12:15:06 CST)
- From Vmd to lammps data file Dimitrios Mantzalis (Mon Feb 27 2012 - 06:55:34 CST)
- possible memory leak with pbc wrap Ana Celia Vila Verde (Fri Feb 24 2012 - 09:16:59 CST)
- Input selection as xyz co-ordinates Ban Arn (Wed Feb 22 2012 - 09:09:33 CST)
- Release of the R.E.D.-III.5 tools FyD (Wed Feb 22 2012 - 05:00:23 CST)
- Secondary structure assignment Zhuyi Xue (Tue Feb 21 2012 - 21:24:14 CST)
- [request] Best practices for rendering frames and making movies Diego Enry Barreto Gomes (Tue Feb 21 2012 - 17:22:56 CST)
- SASA -tcl script Ban Arn (Tue Feb 21 2012 - 12:36:07 CST)
- incorrect number of coordinates in .dcd file error abinayar_at_imsc.res.in (Tue Feb 21 2012 - 00:53:08 CST)
- how to add spring between two atoms SONY kaur (Mon Feb 20 2012 - 13:05:40 CST)
- .xyz bond winardi, erik (Mon Feb 20 2012 - 05:15:05 CST)
- Distance between center of mass of two amino acid residues. mish (Sun Feb 19 2012 - 10:27:45 CST)
- quicksurf and PBC Philippe Bopp / temporary (Sat Feb 18 2012 - 09:45:48 CST)
- About FFTP with transition metal complexes Francesco Pietra (Sat Feb 18 2012 - 00:23:01 CST)
- trajector@VMD Turgay Cakmak (Fri Feb 17 2012 - 08:54:15 CST)
- append glow lights to a VMD/Tachyon scene Filip Persson (Fri Feb 17 2012 - 03:11:53 CST)
- pdb reader/writer appears to corrupt pdb output Bennion, Brian (Thu Feb 16 2012 - 14:49:06 CST)
- Membrane and box with PBC Ricardo Soares (Thu Feb 16 2012 - 12:28:06 CST)
- Create multiple tcl interpreter child instances within VMD to run several scripts at once Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:23:15 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once John Stone (Thu Feb 16 2012 - 11:40:11 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once Axel Kohlmeyer (Thu Feb 16 2012 - 12:46:48 CST)
- quick-surf and throb Philippe Bopp / temporary (Thu Feb 16 2012 - 03:55:32 CST)
- Re: [Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides] Jim Phillips (Wed Feb 15 2012 - 10:24:11 CST)
- ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: Urszula Uciechowska (Wed Feb 15 2012 - 07:59:30 CST)
- installation error Urszula Uciechowska (Wed Feb 15 2012 - 03:28:59 CST)
- ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: Urszula Uciechowska (Wed Feb 15 2012 - 01:48:52 CST)
- Hbonds Analysis Aric Newton (Tue Feb 14 2012 - 14:22:27 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Re: Hbonds Analysis John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Re: Hbonds Analysis Aric Newton (Wed Feb 15 2012 - 18:11:58 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Wed Feb 15 2012 - 18:14:24 CST)
- Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. Aric Newton (Thu Feb 16 2012 - 10:27:38 CST)
- Re: Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. John Stone (Thu Feb 16 2012 - 10:34:58 CST)
- Re: Hbonds Analysis John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Timestep Molybdos Kirkimpolakis (Mon Feb 13 2012 - 15:53:15 CST)
- radial distribution funtion Paymon Pirzadeh (Mon Feb 13 2012 - 15:21:25 CST)
- Spatial (angular) distribution function David Cohen-Tanugi (Mon Feb 13 2012 - 13:38:11 CST)
- Patch for deoxy and dideoxy nucleotides Stefan Franzen (Mon Feb 13 2012 - 09:31:12 CST)
- Problem with VMD 1.9.1 (CUDA) on Snow Leopard Christian M點ksch (Mon Feb 13 2012 - 05:02:54 CST)
- Meadionize lecan (Sun Feb 12 2012 - 21:05:15 CST)
- PROPKA doesn't work in recent VMD1.9.1 Albert (Sun Feb 12 2012 - 05:25:14 CST)
- problem with catdcd Albert (Sun Feb 12 2012 - 02:23:40 CST)
- charges in VMD 1.9 vs. VMD 1.8.7 Philippe Bopp / temporary (Fri Feb 10 2012 - 07:43:17 CST)
- Stand-alone VMD ? R. Charbel Maroun (Fri Feb 10 2012 - 05:26:38 CST)
- multiseq doesn't respond to ctrl key correctly charles sun (Thu Feb 09 2012 - 22:58:45 CST)
- radial distribution function Paymon Pirzadeh (Thu Feb 09 2012 - 20:15:15 CST)
- change of font lecan (Thu Feb 09 2012 - 20:01:17 CST)
- Source Command MARK PLUMMER (Thu Feb 09 2012 - 10:06:42 CST)
- Source Command MARK PLUMMER (Thu Feb 09 2012 - 09:53:36 CST)
- Use of coarse grain plugin kirtana S (Wed Feb 08 2012 - 17:35:26 CST)
- VMD Contact map through time Zack Scholl (Wed Feb 08 2012 - 16:09:04 CST)
- charge visualization niladri patra (Tue Feb 07 2012 - 18:41:37 CST)
- Use variable in atomselect command Brian Kim (Tue Feb 07 2012 - 15:16:17 CST)
- NAMDenergy plugin_VMD_van der Waal interactions Bruno Lu韘 Pinto de Oliveira (Tue Feb 07 2012 - 09:20:23 CST)
- Configure VMD while GROMACS Installation Hitesh Patel (Tue Feb 07 2012 - 03:39:30 CST)
- testing vmd1.9.1 Bennion, Brian (Mon Feb 06 2012 - 18:19:19 CST)
- Tcl script error Ban Arn (Mon Feb 06 2012 - 10:50:14 CST)
- Re: Tcl script error John Stone (Mon Feb 06 2012 - 10:58:26 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 11:12:12 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 11:54:35 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 11:57:57 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 12:02:47 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 12:05:49 CST)
- Re: Tcl script error John Stone (Wed Feb 08 2012 - 15:18:44 CST)
- Re: Tcl script error Ban Arn (Wed Feb 08 2012 - 15:59:22 CST)
- Re: Tcl script error John Stone (Thu Feb 09 2012 - 14:23:21 CST)
- Re: Tcl script error Ban Arn (Thu Feb 09 2012 - 16:17:48 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 11:46:43 CST)
- Re: Tcl script error John Stone (Mon Feb 06 2012 - 10:58:26 CST)
- PSFGEN and Reading Bonds from PDB Files Rajan Vatassery (Sun Feb 05 2012 - 14:13:43 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Axel Kohlmeyer (Sun Feb 05 2012 - 15:36:29 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Chris Harrison (Sun Feb 05 2012 - 15:45:19 CST)
- Re: PSFGEN and Reading Bonds from PDB Files flavio seixas (Sun Feb 05 2012 - 18:24:40 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Rajan Vatassery (Mon Feb 06 2012 - 11:02:14 CST)
- ffTK in the just released VMD 1.9.1 JC Gumbart (Sat Feb 04 2012 - 15:04:05 CST)
- Announce: VMD 1.9.1 released John Stone (Sat Feb 04 2012 - 14:25:58 CST)
- The spheres become oval, getting close to the screen borders Cosseddu, Salvatore (Sun Feb 05 2012 - 09:53:57 CST)
- create images in vmd oguz gurbulak (Fri Feb 03 2012 - 05:34:54 CST)
- how to display the full molecule when use "within" option? Albert (Fri Feb 03 2012 - 05:31:10 CST)
- floating error - tcl script Ban Arn (Fri Feb 03 2012 - 04:51:11 CST)
- Error while running steered MD script Ban Arn (Thu Feb 02 2012 - 10:24:18 CST)
- how to measure residues' chi angle in VMD? Albert (Thu Feb 02 2012 - 03:34:27 CST)
- how to merge two PDB trajectories? Albert (Wed Feb 01 2012 - 23:34:31 CST)
- is it possible to enable GPU rendering? Albert (Wed Feb 01 2012 - 14:04:02 CST)
- Save coor coordinates as pdb R. Charbel Maroun (Wed Feb 01 2012 - 12:26:31 CST)
- Gromacs analysis tools for Namd output PAUL NEWMAN (Wed Feb 01 2012 - 11:41:40 CST)
- Re: RE : PCA of desmond trajectories Hitesh Patel (Wed Feb 01 2012 - 10:26:44 CST)
- Unusual visualisations Ben Hall (Wed Feb 01 2012 - 09:54:01 CST)
- PCA of desmond trajectories Hitesh Patel (Wed Feb 01 2012 - 09:29:15 CST)
- Rmsd script with arguments Mustafa Tekpinar (Tue Jan 31 2012 - 13:48:40 CST)
- Quantitative meaning of volmap isosurface Ben Hall (Tue Jan 31 2012 - 06:01:20 CST)
- how to fix structural alignment pdbs thereal sisterdot (Tue Jan 31 2012 - 03:04:52 CST)
- how to configure Tachyon image render size? Albert (Mon Jan 30 2012 - 11:52:02 CST)
- NewRibbons/NewCartoon problem due to missing CUDA ? thereal sisterdot (Mon Jan 30 2012 - 05:27:33 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? Axel Kohlmeyer (Tue Jan 31 2012 - 07:18:10 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? John Stone (Tue Jan 31 2012 - 15:47:00 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? thereal sisterdot (Thu Feb 02 2012 - 05:49:34 CST)
- Calculation of ligand displacement Vs time Ban Arn (Mon Jan 30 2012 - 03:53:27 CST)
- problem with new plugin installation. Albert (Sat Jan 28 2012 - 01:18:14 CST)
- Cutting a sphere with a specified radius along a trajectory Mustafa Tekpinar (Fri Jan 27 2012 - 16:26:29 CST)
- Re: how to enlarge the menu font? Albert (Fri Jan 27 2012 - 01:33:48 CST)
- how to enlarge the menu font? Albert (Fri Jan 27 2012 - 00:18:36 CST)
- Viewing "other" data as a trajectory plays J. Nathan Scott (Thu Jan 26 2012 - 11:40:08 CST)
- package ::struct::set not available Ana Celia Vila Verde (Thu Jan 26 2012 - 08:36:56 CST)
- VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 16:08:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 19:35:42 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubeti膷 (Thu Jan 26 2012 - 03:04:29 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Felix Frolow (Thu Jan 26 2012 - 06:32:50 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubeti膷 (Thu Jan 26 2012 - 07:06:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Axel Kohlmeyer (Thu Jan 26 2012 - 06:52:27 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Thu Jan 26 2012 - 09:34:20 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubeti膷 (Thu Jan 26 2012 - 03:04:29 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 19:35:42 CST)
- unit cell volume is zero jeela keel (Wed Jan 25 2012 - 15:56:40 CST)
- Looking for nice example images for VMD 1.9.1 release page... John Stone (Wed Jan 25 2012 - 14:29:39 CST)
- atomselect counting jeela keel (Wed Jan 25 2012 - 08:39:47 CST)
- Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 05:48:04 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 08:46:25 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 09:55:23 CST)
- Re: Topotools - limit to size of system it can be used for? John Stone (Tue Jan 24 2012 - 10:09:45 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 10:13:24 CST)
- Re: Topotools - limit to size of system it can be used for? John Stone (Tue Jan 24 2012 - 10:15:38 CST)
- Re: Re: Topotools - limit to size of system it can be used for? John Stone (Wed Feb 08 2012 - 10:06:45 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Wed Feb 15 2012 - 04:21:28 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
- ImportError: cannot import name AtomSel Wim R. Cardoen (Mon Jan 23 2012 - 15:36:19 CST)
- Calling all DCD files in a directory sequentially using CatDCD Bryan Roessler (Mon Jan 23 2012 - 15:11:34 CST)
- script to modify cysteines with spinlabel Anna Kuznetsova (Mon Jan 23 2012 - 14:55:50 CST)
- VMD and Centos 6 Irene Newhouse (Sat Jan 21 2012 - 22:49:47 CST)
- ERROR) measure gofr: bad frame range given. max jeela keel (Fri Jan 20 2012 - 14:43:13 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 09:56:43 CST)
- Re: ERROR) measure gofr: bad frame range given. max John Stone (Mon Jan 23 2012 - 10:01:36 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 11:18:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 11:35:59 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 11:55:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 12:45:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 12:51:41 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 12:55:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 14:13:02 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 15:06:10 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 16:25:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 11:53:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- is it possible to hide ONLY non-polar hydrogens? Albert (Fri Jan 20 2012 - 03:54:32 CST)
- (no subject) vaneeta bala (Fri Jan 20 2012 - 01:11:06 CST)
- ionic radii of sodium and chloride Zumot, Elia Nabil (Thu Jan 19 2012 - 20:12:38 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Fri Jan 20 2012 - 11:03:06 CST)
- Re: ionic radii of sodium and chloride John Stone (Fri Jan 20 2012 - 14:05:58 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 19:55:53 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Fri Jan 20 2012 - 20:17:22 CST)
- RE: ionic radii of sodium and chloride Cosseddu, Salvatore (Sun Jan 22 2012 - 15:27:30 CST)
- Re: ionic radii of sodium and chloride John Stone (Tue Jan 24 2012 - 15:23:04 CST)
- Re: ionic radii of sodium and chloride Alexander Balaeff (Fri Jan 20 2012 - 13:59:55 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- Generating a psf file using VMD Ganesh Kamath (Thu Jan 19 2012 - 16:56:47 CST)
- rendering question Alex Angerhofer (Thu Jan 19 2012 - 10:56:59 CST)
- Use "Metal complexes/FeS-clusters" in VMD paratool Jiajian Li (Wed Jan 18 2012 - 16:01:10 CST)
- Haptic devices for IMD gpat_at_bioacademy.gr (Wed Jan 18 2012 - 09:56:21 CST)
- New "surf" calculations in VMD 1.9.1 beta FX (Wed Jan 18 2012 - 06:12:08 CST)
- Using threads in VMD's tcl V韈tor (Tue Jan 17 2012 - 10:04:57 CST)
- Question regarding HBond analysis Ganesh Kamath (Mon Jan 16 2012 - 17:05:19 CST)
- using vmd to apply symmetry transformations Bennion, Brian (Fri Jan 13 2012 - 09:21:39 CST)
- Yet another python question: how to run a python script from the vmd console ? maria goranovic (Fri Jan 13 2012 - 05:04:16 CST)
- precompiled python libraries still work for vmd 1.9 maria goranovic (Fri Jan 13 2012 - 04:50:12 CST)
- using fit_angle.py over a trajectory maria goranovic (Fri Jan 13 2012 - 03:36:26 CST)
- Problems in setting up low pH systems Sheng, Zi-Zhang (Wed Jan 11 2012 - 10:03:10 CST)
- camera position and scale Arham Amouie (Mon Jan 09 2012 - 08:09:46 CST)
- Implicit Ligand Sampling-molecule rotation issue Aaron Oakley (Sun Jan 08 2012 - 18:30:08 CST)
- vmd-density-profile subrata paul (Sat Jan 07 2012 - 07:11:26 CST)
- method for user-defined coloring JhonY. I. (Fri Jan 06 2012 - 11:53:37 CST)
- Coloring by RMSD during trajectory Joseph Bylund (Fri Jan 06 2012 - 11:40:27 CST)
- vmd 1.9.1 beta - quicksurf rendering artifacts Ajasja Ljubeti膷 (Wed Jan 04 2012 - 05:08:18 CST)
- select whole residues Peter C. Lai (Tue Jan 03 2012 - 17:50:00 CST)
- represent water molecules oguz gurbulak (Mon Jan 02 2012 - 05:48:41 CST)
- external field application sarah k (Sun Jan 01 2012 - 03:57:21 CST)
- CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:07:05 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Wed Jan 11 2012 - 19:09:50 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 12 2012 - 10:48:06 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Fri Jan 13 2012 - 14:52:45 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Thu Jan 19 2012 - 12:47:21 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 19 2012 - 13:07:25 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Axel Kohlmeyer (Thu Jan 19 2012 - 13:55:04 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Thu Jan 19 2012 - 14:02:42 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Wed Jan 25 2012 - 09:59:13 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Wed Jan 25 2012 - 14:50:27 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
- VMD 1.9.1 beta 1 posted for download... John Stone (Fri Dec 30 2011 - 01:02:15 CST)
- using xtc file to generate pdb's J. Matthew Franklin (Tue Dec 27 2011 - 15:38:23 CST)
- paratool CHARMM style charges Adrian Jasi駍ki (Tue Dec 27 2011 - 08:24:49 CST)
- problem generating NAD Magnus Andersson (Fri Dec 23 2011 - 13:37:19 CST)
- Parse Fep plugin error Joseph Antoine Garate (Fri Dec 23 2011 - 08:27:39 CST)
- Change Color Scale Joshua D. Moore (Wed Dec 21 2011 - 13:57:10 CST)
- Ionization Yu Zhou (Tue Dec 20 2011 - 21:23:41 CST)
- Hbond analysis George Tzotzos (Tue Dec 20 2011 - 13:46:38 CST)
- Protein-ligand contact flavio seixas (Tue Dec 20 2011 - 08:10:15 CST)
- I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 07:48:55 CST)
- Re: I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Re: I: vmd on windows John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- R: I: vmd on windows Sergio Decherchi (Tue Jan 03 2012 - 05:42:56 CST)
- Re: R: I: vmd on windows John Stone (Tue Jan 03 2012 - 10:06:38 CST)
- surface potential on an externally loaded msms surface Sergio Decherchi (Fri Jan 27 2012 - 11:52:12 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Fri Jan 27 2012 - 15:39:03 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Sat Jan 28 2012 - 05:57:10 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Sat Jan 28 2012 - 10:38:49 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Sat Jan 28 2012 - 14:22:10 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Wed Feb 01 2012 - 16:21:39 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Thu Feb 02 2012 - 02:59:49 CST)
- Re: I: vmd on windows John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- Re: I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Re: About open file .pdbqt in VMD software John Stone (Mon Dec 19 2011 - 17:29:30 CST)
- VMD on Windows64 Mirco Wahab (Mon Dec 19 2011 - 16:51:45 CST)
- VMD stereo for NVidia Quadro 5000? Alexander Balaeff (Mon Dec 19 2011 - 12:07:18 CST)
- Assign velocities so I can color by velocity Joshua D. Moore (Mon Dec 19 2011 - 10:48:36 CST)
- vmd-l DynamicBond between two given type of atoms Salvatore Mario Cosseddu (Mon Dec 19 2011 - 10:44:17 CST)
- Re: vmd-l DynamicBond between two given type of atoms Axel Kohlmeyer (Mon Dec 19 2011 - 12:08:37 CST)
- vmd ligand fluctuation analysis Ban Arn (Fri Dec 16 2011 - 09:28:41 CST)
- vmd on windows Sergio Decherchi (Fri Dec 16 2011 - 09:16:42 CST)
- Multiple Stream Files: What Order? Bryan Roessler (Wed Dec 14 2011 - 11:20:25 CST)
- Solvating with Nonaqueous Solvent Rajan Vatassery (Tue Dec 13 2011 - 12:46:50 CST)
- package MDEnergy menica dibenedetto (Tue Dec 13 2011 - 12:13:02 CST)
- Povray renders labels always centered Bjoern Olausson (Mon Dec 12 2011 - 01:37:04 CST)
- Re: VMD and 3D visualization problems with Nvidia Quadro 4000 Karel Berka (Sat Dec 10 2011 - 15:29:36 CST)
- get Ramachadran plot using textmode Gurunath Katagi (Fri Dec 09 2011 - 22:00:28 CST)
- Tachyon render problem T鰎e Han Balta (Fri Dec 09 2011 - 02:45:09 CST)
- RE: TCL strangeness Gianluca Interlandi (Thu Dec 08 2011 - 20:27:28 CST)
- Tip to start VMD with external terminal Gianluca Interlandi (Thu Dec 08 2011 - 16:06:27 CST)
- to use tcl script in command line Sangita Kachhap (Thu Dec 08 2011 - 04:14:59 CST)
- Coloring particular atom with particular index T鰎e Han Balta (Wed Dec 07 2011 - 11:51:00 CST)
- Analyzing a 10ns simulation on Mac aborts Anthony Rey (Tue Dec 06 2011 - 23:25:17 CST)
- Script for Angular Distribution Function? David Cohen-Tanugi (Tue Dec 06 2011 - 09:45:36 CST)
- mmView - a tool for mmCIF exploration Daniel Svozil (Tue Dec 06 2011 - 05:38:03 CST)
- topology and parameter files for H2 and O2 Yungok Ihm (Tue Dec 06 2011 - 03:52:31 CST)
- Binding site similarity Ban Arn (Mon Dec 05 2011 - 09:51:55 CST)
- Improve OFF plugin: handle colors FX (Mon Dec 05 2011 - 07:20:06 CST)
- Rendering long and high-quality movies from VMD David Cohen-Tanugi (Sun Dec 04 2011 - 21:35:40 CST)
- Re: out-of-order writegmx with topotools 1.2 Axel Kohlmeyer (Sat Dec 03 2011 - 18:18:38 CST)
- Viewing System of Molecules where coordinates are in text file. Joey Vella (Thu Dec 01 2011 - 20:43:45 CST)
- How to disable CUDA in VMD-1.9? Joaim Swedberg (Wed Nov 30 2011 - 20:29:48 CST)
- Reading the SMD information form the log file Molybdos Kirkimpolakis (Wed Nov 30 2011 - 14:54:45 CST)
- Get the camera position SAPAY Nicolas 232321 (Wed Nov 30 2011 - 10:20:52 CST)
- Re: simulation bharat gupta (Wed Nov 30 2011 - 05:50:56 CST)
- convertind dcd to xyz file siladitya mukherjee (Tue Nov 29 2011 - 16:39:22 CST)
- Save pdb with original numbering Ricardo Soares (Tue Nov 29 2011 - 05:47:33 CST)
- Can Catdcd Write Out Periodic Cell Size Information? Tessa Young (Mon Nov 28 2011 - 01:20:31 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 10:39:55 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Axel Kohlmeyer (Mon Nov 28 2011 - 11:45:47 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 16:11:36 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Axel Kohlmeyer (Mon Nov 28 2011 - 17:13:02 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 17:41:40 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Tessa Young (Tue Nov 29 2011 - 23:06:25 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- vmd solvate Pavan Ghatty (Sun Nov 27 2011 - 13:56:17 CST)
- tcl script Ban Arn (Fri Nov 25 2011 - 12:16:47 CST)
- average structure script flavio seixas (Fri Nov 25 2011 - 09:52:40 CST)
- q4md-forcefieldtools.org announcement FyD (Fri Nov 25 2011 - 07:33:39 CST)
- VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Fri Nov 25 2011 - 00:51:07 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Ajasja Ljubeti膷 (Fri Nov 25 2011 - 05:05:32 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Axel Kohlmeyer (Fri Nov 25 2011 - 09:38:01 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Axel Kohlmeyer (Mon Nov 28 2011 - 10:21:20 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU John Stone (Wed Nov 30 2011 - 09:50:16 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Wed Nov 30 2011 - 10:11:53 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
- POPE CHARMM36 generations error. mail gromacs (Thu Nov 24 2011 - 13:13:02 CST)
- how to convert Desmond trajectories into PDB in text mode? mail gromacs (Thu Nov 24 2011 - 13:09:40 CST)
- How to save Automatic psf builder script flavio seixas (Thu Nov 24 2011 - 12:03:15 CST)
- VMD STRIDE not functional after operating system upgrade Vlad Cojocaru (Thu Nov 24 2011 - 08:50:40 CST)
- Change coordinates Andr閟 Morales (Thu Nov 24 2011 - 02:14:02 CST)
- Translocate molecule within a box rainy908 (Wed Nov 23 2011 - 19:51:03 CST)
- clip plane and cpk / VdW Philippe Bopp / temporary (Wed Nov 23 2011 - 04:48:33 CST)
- Rebuilding psf file Siew Wen Leong (Wed Nov 23 2011 - 04:45:38 CST)
- Spam from my email hanif mahboobi (Wed Nov 23 2011 - 03:38:19 CST)
- (no subject) hanif mahboobi (Tue Nov 22 2011 - 21:55:31 CST)
- (no subject) hanif mahboobi (Tue Nov 22 2011 - 18:19:50 CST)
- Radial distribution function in VMD Chirag Vora (Tue Nov 22 2011 - 12:01:52 CST)
- bash scripts quits after few frames Jorgen Simonsen (Tue Nov 22 2011 - 03:55:02 CST)
- VMD and R Thomas Bishop (Mon Nov 21 2011 - 14:42:44 CST)
- compile VMD 1.9 with FLTK 1.3 Vlad Cojocaru (Mon Nov 21 2011 - 06:37:19 CST)
- movie out of principal component analysis maria goranovic (Mon Nov 21 2011 - 04:35:44 CST)
- Re: movie out of principal component analysis Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- Re: movie out of principal component analysis maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Re: movie out of principal component analysis Axel Kohlmeyer (Tue Nov 22 2011 - 08:10:39 CST)
- Re: movie out of principal component analysis Vlad Cojocaru (Tue Nov 22 2011 - 08:13:29 CST)
- Re: movie out of principal component analysis maria goranovic (Wed Nov 23 2011 - 04:25:08 CST)
- Re: movie out of principal component analysis Ahmet Bakan (Wed Nov 23 2011 - 21:27:45 CST)
- Re: movie out of principal component analysis maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Re: movie out of principal component analysis Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois David Brandon (Thu Nov 17 2011 - 13:53:59 CST)
- Installation problems with VMD 1.9 PaulW (Thu Nov 17 2011 - 07:17:44 CST)
- Patching Glu/N-terminus peptide bond type bond Joaim Swedberg (Wed Nov 16 2011 - 17:41:38 CST)
- Maximum length of an extended peptide? Aaron Oakley (Tue Nov 15 2011 - 17:53:14 CST)
- Mac OS X 64 bit Issues Andrew Fenley (Tue Nov 15 2011 - 15:00:56 CST)
- VMD slows down at multiple windows lam nguyen (Mon Nov 14 2011 - 16:51:46 CST)
- Re: VMD slows down at multiple windows Ajasja Ljubeti膷 (Tue Nov 15 2011 - 03:08:28 CST)
- Re: VMD slows down at multiple windows lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
- Re: VMD slows down at multiple windows Peter C. Lai (Thu Nov 17 2011 - 00:35:13 CST)
- RE: VMD slows down at multiple windows Tristan Croll (Thu Nov 17 2011 - 00:29:45 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 11:16:10 CST)
- Re: VMD slows down at multiple windows John Stone (Thu Nov 17 2011 - 13:30:06 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:01:51 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:05:18 CST)
- Re: VMD slows down at multiple windows John Stone (Thu Nov 17 2011 - 14:13:49 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:20:41 CST)
- Re: VMD slows down at multiple windows Gianluca Interlandi (Thu Nov 17 2011 - 16:32:09 CST)
- Re: VMD slows down at multiple windows John Stone (Fri Nov 18 2011 - 11:18:44 CST)
- Re: VMD slows down at multiple windows lam nguyen (Fri Nov 18 2011 - 12:43:30 CST)
- Re: VMD slows down at multiple windows lam nguyen (Fri Nov 18 2011 - 13:42:12 CST)
- Re: VMD slows down at multiple windows lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
- Re: VMD slows down at multiple windows John Stone (Wed Nov 16 2011 - 12:56:18 CST)
- Re: VMD slows down at multiple windows Ajasja Ljubeti膷 (Tue Nov 15 2011 - 03:08:28 CST)
- pbc wrap Hitesh Patel (Mon Nov 14 2011 - 08:48:42 CST)
- (no subject) niaz poorgholami (Fri Nov 11 2011 - 22:02:25 CST)
- Volume Slice + Coloring by volume problem in MacOsx (REPOST) Passerone, Daniele (Fri Nov 11 2011 - 15:06:27 CST)
- how to place polymers on carbon nanotube surface niaz poorgholami (Fri Nov 11 2011 - 12:31:47 CST)
- Save "Visulaization State" from within Tk Console Bjoern Olausson (Fri Nov 11 2011 - 07:41:18 CST)
- Re: Save "Visulaization State" from within Tk Console Bjoern Olausson (Fri Nov 11 2011 - 07:48:03 CST)
- Re: Save "Visulaization State" from within Tk Console Axel Kohlmeyer (Fri Nov 11 2011 - 08:41:38 CST)
- Re: Save "Visulaization State" from within Tk Console John Stone (Fri Nov 11 2011 - 09:20:43 CST)
- UPDATE OCCUPANCY Jordi Faraudo (Fri Nov 11 2011 - 06:04:50 CST)
- RMSD Tool failes with MOL ID > 999 Bjoern Olausson (Fri Nov 11 2011 - 05:52:11 CST)
- Couldn't locate ppmtompeg Rabab Toubar (Thu Nov 10 2011 - 14:57:58 CST)
- installing and running VMD on Windows 64-bit Rabab Toubar (Thu Nov 10 2011 - 09:17:54 CST)
- pbwithin selection arash azari (Thu Nov 10 2011 - 07:58:28 CST)
- Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection) Sam Wallace (Wed Nov 09 2011 - 16:38:39 CST)
- How to parse very large trajectories? Aleksandr Kivenson (Wed Nov 09 2011 - 14:41:55 CST)
- Suppress "Info)" messages Bjoern Olausson (Mon Nov 07 2011 - 11:56:06 CST)
- tcl procedure to set data Casey Johnson (Sun Nov 06 2011 - 19:26:25 CST)
- blank output sarah k (Sun Nov 06 2011 - 09:34:39 CST)
- lipid bilayer thickness Andr閟 Morales (Sun Nov 06 2011 - 00:07:36 CDT)
- tkinter load problem in VMD Gianluca Interlandi (Sun Nov 06 2011 - 00:04:42 CDT)
- Batch image creation Juan Antonio Raygoza Garay (Fri Nov 04 2011 - 16:59:57 CDT)
- Secondary structure elements in VMD Rabab Toubar (Fri Nov 04 2011 - 16:03:26 CDT)
- find avgstruct hamze rahimi (Fri Nov 04 2011 - 04:30:38 CDT)
- Volume Slice + Coloring by volume problem in MacOsx Passerone, Daniele (Fri Nov 04 2011 - 00:31:15 CDT)
- How to understand the occupancy? lina (Thu Nov 03 2011 - 09:06:06 CDT)
- radius of gyration ban arn (Wed Nov 02 2011 - 14:41:09 CDT)
- Re: namd-l: selection of cholesterol molecules Chris Harrison (Wed Nov 02 2011 - 00:06:35 CDT)
- Use of RBCG to convert multiple frames from atomistic trajectory to Coarse grained rohan uttarwar (Tue Nov 01 2011 - 16:17:08 CDT)
- Finding resname without using atomselect? Casey Johnson (Tue Nov 01 2011 - 15:46:28 CDT)
- graphical representation kirtana S (Tue Nov 01 2011 - 12:21:29 CDT)
- rlwrap problem on Frank Barry (Tue Nov 01 2011 - 10:50:26 CDT)
- H-bond distance measurement Aditya Padhi (Tue Nov 01 2011 - 03:53:57 CDT)
- VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 02:16:14 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 19:08:07 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:28:51 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Wed Nov 16 2011 - 19:04:38 CST)
- Re: VRPN-ICMS conflict with NVidia driver John Stone (Fri Nov 18 2011 - 01:49:18 CST)
- Re: VRPN-ICMS conflict with NVidia driver John Stone (Wed Nov 30 2011 - 09:22:56 CST)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
- selection matziast_at_med.uth.gr (Mon Oct 31 2011 - 13:39:43 CDT)
- Dynamic lines Bogdan Costescu (Mon Oct 31 2011 - 13:21:59 CDT)
- selection matziast_at_med.uth.gr (Mon Oct 31 2011 - 12:45:50 CDT)
- move ligand around the protin Steven Neumann (Mon Oct 31 2011 - 10:46:07 CDT)
- Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Mon Oct 31 2011 - 10:12:15 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 16:07:46 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 10:19:21 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Gianluca Interlandi (Fri Nov 11 2011 - 12:30:08 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 12:42:32 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Gianluca Interlandi (Fri Nov 11 2011 - 13:01:17 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 16:13:14 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Hi all, Bo H酶jen Justesen (Mon Oct 31 2011 - 05:47:22 CDT)
- Run a variable through VMD Tk/Tcl console .vmdrc file Anthony Rey (Sun Oct 30 2011 - 06:55:06 CDT)
- Run a variable through VMD Tk/Tcl console /// .vmdrc file Anthony Rey (Sun Oct 30 2011 - 06:14:22 CDT)
- About the syntax in Autopsf - Add Patch for PRES PLIG Francesco Pietra (Sun Oct 30 2011 - 03:28:27 CDT)
- Structure preparation via VMD James Starlight (Sat Oct 29 2011 - 07:29:33 CDT)
- Problem with Movie Maker Carolyn Phillips (Fri Oct 28 2011 - 17:41:12 CDT)
- Installing CATDCD on a Mac Michael LeVine (Fri Oct 28 2011 - 14:55:14 CDT)
- VMD crashes. Diego Javier Alonso de Armi駉 (Fri Oct 28 2011 - 10:22:19 CDT)
- Adding a three letter residue name to VMD's protein recognition J. Nathan Scott (Thu Oct 27 2011 - 13:13:09 CDT)
- Is it possible to automatically label all bonds? Mike Wykes (Thu Oct 27 2011 - 11:43:18 CDT)
- Visualizing Timeline (tml) data w/o having to load trajectories Bryan Roessler (Thu Oct 27 2011 - 11:34:40 CDT)
- average pdb from dcd file hamze rahimi (Thu Oct 27 2011 - 07:39:53 CDT)
- Xenon binding site free energies Aaron Oakley (Thu Oct 27 2011 - 01:30:23 CDT)
- Problem vmd 1.9 plus Cave Christian Wohlschlager (Thu Oct 27 2011 - 01:12:09 CDT)
- Compiling vmd 1.9 plugins Matt Fioravante (Wed Oct 26 2011 - 12:55:22 CDT)
- Selecting Atoms within a Volume, Manipulating Volumetric Data Michael LeVine (Sun Oct 23 2011 - 14:24:20 CDT)
- Calculating parameters in lipid bilayers Andr閟 Morales (Thu Oct 20 2011 - 22:04:03 CDT)
- Thinkpad X120e with Linux and VMD Gianluca Interlandi (Thu Oct 20 2011 - 19:48:32 CDT)
- coloring bonds on the same segments differently from those between segments lam nguyen (Thu Oct 20 2011 - 19:07:42 CDT)
- superimposing groups of three atoms bio lab (Thu Oct 20 2011 - 06:25:46 CDT)
- calculation hydrogen bond. subrata paul (Thu Oct 20 2011 - 02:19:04 CDT)
- area per lipid Andr閟 Morales (Thu Oct 20 2011 - 01:12:14 CDT)
- Error running IED Manish (Tue Oct 18 2011 - 13:39:09 CDT)
- angle calculation trajectory Peyman Z.Moghadam (Tue Oct 18 2011 - 12:28:16 CDT)
- atomselect and macro Molybdos Kirkimpolakis (Sat Oct 15 2011 - 15:34:59 CDT)
- Error running IED with VMD Manish (Fri Oct 14 2011 - 08:47:17 CDT)
- hbond analysis subrata paul (Fri Oct 14 2011 - 04:11:46 CDT)
- Installing VMD on Debian Linux James Starlight (Fri Oct 14 2011 - 01:51:01 CDT)
- Using two color scales in one scene Robert Johnson (Thu Oct 13 2011 - 14:23:02 CDT)
- How to select whole residues when at least one atom is within a specific distance Michael LeVine (Thu Oct 13 2011 - 12:48:43 CDT)
- topotools kirtana S (Wed Oct 12 2011 - 15:45:13 CDT)
- Uniform Distribution of drug molecules in water meisam valizadeh kiamahalleh (Wed Oct 12 2011 - 09:35:03 CDT)
- Re: query about "ViewChangeRender" plugin harish vashisth (Tue Oct 11 2011 - 10:42:09 CDT)
- query about "ViewChangeRender" plugin harish vashisth (Mon Oct 10 2011 - 17:04:45 CDT)
- amber traj to pqr - radii error Jesper Soerensen (Mon Oct 10 2011 - 12:42:30 CDT)
- alignment problem Markus K. Dahlgren (Mon Oct 10 2011 - 10:29:40 CDT)
- centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 08:59:11 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 15:34:54 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 17 2011 - 17:46:26 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 17 2011 - 17:58:49 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 17 2011 - 18:46:35 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- Re: VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800 Vlad Cojocaru (Fri Oct 07 2011 - 07:50:19 CDT)
- (no subject) denilson_at_dqi.ufla.br (Thu Oct 06 2011 - 15:12:44 CDT)
- RMSD vs RMSF Rabab Toubar (Thu Oct 06 2011 - 14:22:09 CDT)
- water bridged H-bond calculation Hitesh Patel (Thu Oct 06 2011 - 07:17:26 CDT)
- Solvating hexagonal unit cell Leandro Barros da Silva (Wed Oct 05 2011 - 13:00:27 CDT)
- VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800 Vlad Cojocaru (Wed Oct 05 2011 - 06:47:08 CDT)
- unable to load Amber trajectories to visualize-Coordinate I/O rate 0 frames/sec, 0 MB/sec, 32.4 sec -Please help hongphuc nguyen (Wed Oct 05 2011 - 03:30:58 CDT)
- Fw: denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 11:18:01 CDT)
- (no subject) denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 08:56:08 CDT)
- solvent_box_type lara lara (Sat Oct 01 2011 - 08:13:43 CDT)
- GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 06:39:16 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- Re: GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 08:53:36 CDT)
- Re: GPU choice for large systems John Stone (Sat Oct 01 2011 - 21:26:37 CDT)
- Re: GPU choice for large systems Thomas Bishop (Wed Oct 05 2011 - 14:28:45 CDT)
- Re: GPU choice for large systems John Stone (Fri Nov 11 2011 - 12:41:03 CST)
- Re: GPU choice for large systems John Stone (Sat Oct 01 2011 - 21:20:18 CDT)
- Re: GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- methanol_solvent box lara lara (Sat Oct 01 2011 - 05:45:32 CDT)
- mutator plugin generates extra bond for tip3 Burgess, Don E (Fri Sep 30 2011 - 11:49:26 CDT)
- H Bond Plug-in Questions Alex Hahn (Thu Sep 29 2011 - 11:53:13 CDT)
- VMD meets Andy Warhol/Campbell's Soup on display wall Thomas Bishop (Wed Sep 28 2011 - 18:43:14 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall Axel Kohlmeyer (Wed Sep 28 2011 - 19:46:03 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall John Stone (Fri Sep 30 2011 - 12:19:23 CDT)
- VMD with LAMMPS trjaectory - help? jgrime_at_uchicago.edu (Wed Sep 28 2011 - 18:20:36 CDT)
- vmd topotools 1.2 error oguz gurbulak (Wed Sep 28 2011 - 09:05:17 CDT)
- vmd topotools 1.2 error oguz gurbulak (Wed Sep 28 2011 - 06:41:37 CDT)
- Re: question on "Recompile VMD with larger index types" Axel Kohlmeyer (Wed Sep 28 2011 - 05:44:13 CDT)
- Re: Selecting a laptop for VMD and NAMD Pawe艂 K臋dzierski (Wed Sep 28 2011 - 04:07:30 CDT)
- question on "Recompile VMD with larger index types" JhonY. I. (Wed Sep 28 2011 - 00:50:33 CDT)
- Associating .crd file extension with COR Plugin Vadim Patsalo (Tue Sep 27 2011 - 21:08:31 CDT)
- connectivity in RBCG file(pdb extension) ANURAG JHA (Tue Sep 27 2011 - 18:46:20 CDT)
- Associating .crd file extension with COR Plugin. Vadim Patsalo (Tue Sep 27 2011 - 16:58:50 CDT)
- problem of exceeding max atom number JhonY. I. (Tue Sep 27 2011 - 12:51:43 CDT)
- Re: Selecting a laptop for VMD and NAMD (was: CUDA cores seen by VMD on GT540M) Pawe艂 K臋dzierski (Tue Sep 27 2011 - 09:29:31 CDT)
- convert .coor to pdb matziast_at_med.uth.gr (Mon Sep 26 2011 - 06:08:24 CDT)
- RDF related problems siladitya mukherjee (Sat Sep 24 2011 - 15:17:37 CDT)
- Epsilon, Rmin for copper ions Francesco Pietra (Sat Sep 24 2011 - 03:55:34 CDT)
- Fwd: Copper ions paratool Francesco Pietra (Fri Sep 23 2011 - 10:12:04 CDT)
- Fwd: Saved project and paratool Francesco Pietra (Fri Sep 23 2011 - 06:00:05 CDT)
- stream files and paratool Francesco Pietra (Fri Sep 23 2011 - 03:10:52 CDT)
- Locked files in Windows 7 Ignacio Fern醤dez Galv醤 (Thu Sep 22 2011 - 06:08:13 CDT)
- Quick TCl scripting question Anthony Rey (Wed Sep 21 2011 - 22:49:02 CDT)
- redirecting to output kirtana S (Wed Sep 21 2011 - 13:31:52 CDT)
- radial pair distribution problems aiswarya pawar (Wed Sep 21 2011 - 01:27:50 CDT)
- NetCDF plugin Alexandr Kornev (Tue Sep 20 2011 - 17:55:59 CDT)
- extra characters kirtana S (Tue Sep 20 2011 - 10:54:07 CDT)
- Problem with measuring dihedrals Jernej Zidar (Tue Sep 20 2011 - 03:47:24 CDT)
- Problem building POPE membrane with plugin using CHARMM36 Maggie Pruitt (Mon Sep 19 2011 - 12:19:41 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 Zumot, Elia Nabil (Fri Oct 14 2011 - 11:18:25 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Fri Oct 14 2011 - 11:37:57 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 Zumot, Elia Nabil (Fri Oct 14 2011 - 11:55:18 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 Axel Kohlmeyer (Fri Oct 14 2011 - 13:38:52 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Fri Oct 14 2011 - 15:09:44 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- RMSD heatmapper -plugin Anssi Nurminen (Mon Sep 19 2011 - 12:03:51 CDT)
- select each element of array kirtana S (Mon Sep 19 2011 - 11:11:59 CDT)
- Adding water in protein madhumita das (Mon Sep 19 2011 - 06:01:15 CDT)
- bug in Hbond Option hamid mosaddeghi (Mon Sep 19 2011 - 00:37:41 CDT)
- topotools readvarxyz puroorava annapaneni (Sun Sep 18 2011 - 12:22:58 CDT)
- Creating a fragment of the given protein Trung Nguyen Duc (Sun Sep 18 2011 - 11:43:18 CDT)
- fonts for paratool Francesco Pietra (Sun Sep 18 2011 - 09:11:38 CDT)
- I can't not see my post in Archive list hongphuc nguyen (Sat Sep 17 2011 - 22:52:58 CDT)
- units on the volmap tool Raul Araya (Sat Sep 17 2011 - 00:26:04 CDT)
- color with name Yamei (Fri Sep 16 2011 - 11:56:03 CDT)
- A bug about "trans" command KM Tu (Fri Sep 16 2011 - 10:33:49 CDT)
- Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 08:13:49 CDT)
- Re: Clustering MD trajectories Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 10:39:40 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 14:52:47 CDT)
- Re: Clustering MD trajectories John Stone (Fri Sep 16 2011 - 15:02:59 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 15:42:45 CDT)
- Re: Clustering MD trajectories Anurag Sethi (Fri Sep 16 2011 - 17:04:29 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Mon Sep 19 2011 - 14:33:34 CDT)
- Re: Clustering MD trajectories Kirby Vandivort (Wed Sep 21 2011 - 14:52:54 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Wed Sep 21 2011 - 15:06:13 CDT)
- Re: Clustering MD trajectories Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- calculate the solvent molecule within a cut off from protein aiswarya pawar (Thu Sep 15 2011 - 05:36:25 CDT)
- Cionize Christian Wohlschlager (Thu Sep 15 2011 - 01:12:16 CDT)
- LINK or PACTH command in VMD snoze pa (Wed Sep 14 2011 - 11:48:53 CDT)
- Does Paratool support CgenFF? Alexandre Suman de Araujo (Wed Sep 14 2011 - 07:22:33 CDT)
- Showing and Calculating the amount of water molecules inside carbon nanotube meisam valizadeh kiamahalleh (Tue Sep 13 2011 - 22:23:13 CDT)
- 2011 VMD User Survey results are posted... John Stone (Tue Sep 13 2011 - 15:26:21 CDT)
- RDF calculation for production steps siladitya mukherjee (Tue Sep 13 2011 - 15:15:53 CDT)
- Bug in 'source' command or in for loop? dwds gerge (Tue Sep 13 2011 - 12:06:10 CDT)
- Showing and Calculating the amount of water molecules inside carbon nanotube meisam valizadeh kiamahalleh (Mon Sep 12 2011 - 22:18:48 CDT)
- linux issues Vivek Ranjan (Mon Sep 12 2011 - 11:01:25 CDT)
- Displaying residues on chain A within X of chain B Irene Newhouse (Fri Sep 09 2011 - 16:19:18 CDT)
- Re: Displaying residues on chain A within X of chain B Axel Kohlmeyer (Fri Sep 09 2011 - 17:51:33 CDT)
- RE: Displaying residues on chain A within X of chain B Mark Cunningham (Fri Sep 09 2011 - 20:40:36 CDT)
- cionize Christian Wohlschlager (Fri Sep 09 2011 - 02:10:28 CDT)
- output values in my script kirtana S (Thu Sep 08 2011 - 17:38:04 CDT)
- Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Thu Sep 08 2011 - 12:38:41 CDT)
- Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
- Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
- Re: Visualization of FEP simulation Pawe艂 K臋dzierski (Thu Oct 20 2011 - 03:06:30 CDT)
- RE: Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Thu Oct 20 2011 - 06:15:37 CDT)
- Re: Visualization of FEP simulation Pawel Kedzierski (Fri Oct 21 2011 - 04:26:51 CDT)
- RE: Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Fri Oct 21 2011 - 12:37:34 CDT)
- Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
- Visualization of FEP simulation Bruno Lu韘 Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
- Fwd: Pdb file generation,bad water removal and coordinates of psf. madhumita das (Wed Sep 07 2011 - 20:24:47 CDT)
- Visualizing Trajectory file: .pdb or .xyz winardi, erik (Wed Sep 07 2011 - 13:49:06 CDT)
- autoionize Jacopo Sgrignani (Wed Sep 07 2011 - 09:00:02 CDT)
- draw intersection volume between two spheres Filip Persson (Wed Sep 07 2011 - 08:30:33 CDT)
- TK console problem J. Matthew Franklin (Tue Sep 06 2011 - 22:40:26 CDT)
- VMD align to principal axis kirtana S (Tue Sep 06 2011 - 22:06:04 CDT)
- Count waters inside a specified box Manish (Tue Sep 06 2011 - 11:11:40 CDT)
- define water cavity using atom selection in graphical representations window Filip Persson (Tue Sep 06 2011 - 03:08:20 CDT)
- Re: define water cavity using atom selection in graphical representations window Hitesh Patel (Tue Sep 06 2011 - 04:20:35 CDT)
- Re: define water cavity using atom selection in graphical representations window Axel Kohlmeyer (Tue Sep 06 2011 - 05:11:00 CDT)
- plugin kirtana S (Mon Sep 05 2011 - 13:38:47 CDT)
- Density Profile in VMD oguz gurbulak (Mon Sep 05 2011 - 02:37:37 CDT)
- How to read pdbqt file? Chirag Vora (Sat Sep 03 2011 - 14:57:01 CDT)
- Re: namd-l: SASA of PBD files sajad falsafi (Sat Sep 03 2011 - 14:38:17 CDT)
- Radial distribution function Kartheek (Sat Sep 03 2011 - 10:10:03 CDT)
- Radial distribution function Kartheek (Sat Sep 03 2011 - 05:33:50 CDT)
- Re: Movie maker in VMD siladitya mukherjee (Thu Sep 01 2011 - 13:04:58 CDT)
- Movie maker in VMD siladitya mukherjee (Thu Sep 01 2011 - 11:11:15 CDT)
- Invitation to connect on LinkedIn Hideya Nakamura via LinkedIn (Wed Aug 31 2011 - 19:22:00 CDT)
- Fw: Hbond in VMD hamid mosaddeghi (Wed Aug 31 2011 - 12:29:01 CDT)
- Saving ionized.psf from add ions plug in of VMD Andrea Holfelder (Wed Aug 31 2011 - 10:35:45 CDT)
- pdb naming convention to get ribbon representation Casey Johnson (Wed Aug 31 2011 - 09:08:11 CDT)
- CUDA cores seen by VMD on GT540M Pawe K阣zierski (Wed Aug 31 2011 - 09:02:09 CDT)
- Hbond in VMD hamid mosaddeghi (Wed Aug 31 2011 - 03:12:47 CDT)
- Re: Fw: Lammps Output data format Axel Kohlmeyer (Tue Aug 30 2011 - 12:45:15 CDT)
- VMD display residues ban arn (Tue Aug 30 2011 - 12:14:35 CDT)
- Hbonds for a specific frame Hitesh Patel (Tue Aug 30 2011 - 11:47:23 CDT)
- VMD movie ban arn (Tue Aug 30 2011 - 10:31:58 CDT)
- Depletion of few atoms makkuva Ram vivek (Mon Aug 29 2011 - 22:16:16 CDT)
- loading a trajectory where particles aren't conservd Chris Knorowski (Mon Aug 29 2011 - 16:35:28 CDT)
- Lammps Output data format winardi, erik (Mon Aug 29 2011 - 12:20:31 CDT)
- 3d viz? Dave Schall (Mon Aug 29 2011 - 09:28:34 CDT)
- Water in binding site ban arn (Mon Aug 29 2011 - 04:47:53 CDT)
- Represent custom peptide as ribbon? Casey Johnson (Sat Aug 27 2011 - 09:24:07 CDT)
- vmd does not run on the VNC client peng liu (Thu Aug 25 2011 - 21:15:15 CDT)
- Fwd: Re: namd-l: How to evaluate the area per lipid and thickness of the lipid bilayer in a membrane-protein system? Vlad Cojocaru (Thu Aug 25 2011 - 02:14:15 CDT)
- Text in line with line Nuno Sousa Cerqueira (Wed Aug 24 2011 - 21:21:52 CDT)
- how to load Orient package in VMD Jiao, Dian NMN (-EXP) (Wed Aug 24 2011 - 15:24:42 CDT)
- Initial configuration reorientation Anna (Wed Aug 24 2011 - 11:48:38 CDT)
- convert pdb format to normal pdb format hamze rahimi (Wed Aug 24 2011 - 04:48:09 CDT)
- extrabonds Ling Wu (Tue Aug 23 2011 - 16:13:53 CDT)
- RMSD calculator extension George Tzotzos (Tue Aug 23 2011 - 08:59:19 CDT)
- Problem with psfgen Florian Mrugalla (Tue Aug 23 2011 - 07:41:02 CDT)
- Wrap PBC inside unit cell鈥 Casey Johnson (Mon Aug 22 2011 - 17:54:41 CDT)
- Fwd: Dowser plugin: Error message George Tzotzos (Mon Aug 22 2011 - 16:34:31 CDT)
- how to put two identical proteins in a same water sphere? juan jesus sanchez sanchez (Mon Aug 22 2011 - 13:06:12 CDT)
- DNA hairpin Shesh Nath (Sat Aug 20 2011 - 01:19:04 CDT)
- changing origin of rotation (NOT center of mass) Michael Daily (Fri Aug 19 2011 - 13:41:06 CDT)
- Turning Label Info output off in vmd console Sebasti醤 Guti閞rez (Thu Aug 18 2011 - 18:14:06 CDT)
- How can I draw secondary structures if I only have the carbon alpha coordinates Mert G黵 (Thu Aug 18 2011 - 10:01:00 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Mert G黵 (Thu Aug 18 2011 - 12:20:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 12:36:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Davide Provasi (Thu Aug 18 2011 - 13:00:15 CDT)
- RE: How can I draw secondary structures if I only have the carbon alpha coordinates Cojocaru, Vlad (Thu Aug 18 2011 - 14:46:45 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Axel Kohlmeyer (Thu Aug 18 2011 - 13:27:42 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Mert G黵 (Thu Aug 18 2011 - 12:20:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Tim Travers (Thu Aug 18 2011 - 12:26:14 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
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- Re: visualizing unrealistic bonds Magnus Andersson (Mon Aug 15 2011 - 14:26:08 CDT)
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- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:22:08 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:47:57 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 21:15:32 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 21:39:41 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sun Aug 14 2011 - 00:09:28 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
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- problem to render .cms file AB (Thu Aug 04 2011 - 02:11:34 CDT)
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- Re: making movie John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- Re: making movie John Stone (Tue Aug 23 2011 - 08:59:36 CDT)
- Re: making movie Axel Kohlmeyer (Tue Aug 23 2011 - 09:28:57 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 09:57:32 CDT)
- Re: making movie Axel Kohlmeyer (Tue Aug 23 2011 - 09:59:59 CDT)
- Re: making movie John Stone (Tue Aug 23 2011 - 10:36:05 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- Re: making movie John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
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- Re: shades of licorice representation Boris Steipe (Tue Jul 19 2011 - 10:10:01 CDT)
- RE: shades of licorice representation Mark Cunningham (Tue Jul 19 2011 - 11:53:54 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
- RE: shades of licorice representation Mark Cunningham (Tue Jul 19 2011 - 15:19:53 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 15:24:26 CDT)
- Re: shades of licorice representation maria goranovic (Wed Jul 20 2011 - 05:28:48 CDT)
- Re: shades of licorice representation Axel Kohlmeyer (Wed Jul 20 2011 - 08:57:58 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
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- RE: Quadro FX1800 , Stereo and VMD Jacob Story (Fri Jul 08 2011 - 11:23:30 CDT)
- Re: Quadro FX1800 , Stereo and VMD John Stone (Fri Jul 08 2011 - 11:38:42 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 11:49:09 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 12:00:23 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 12:00:49 CDT)
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- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 11:20:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Mon Jul 11 2011 - 04:12:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work John Stone (Tue Jul 12 2011 - 13:19:29 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Tue Jul 12 2011 - 14:19:51 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Tue Jul 12 2011 - 15:17:50 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Wed Jul 13 2011 - 08:29:18 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
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- Re: Problem with for loop. Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- Re: Re: Problem with for loop. Axel Kohlmeyer (Wed Jul 06 2011 - 10:57:44 CDT)
- RE: Re: Problem with for loop. Mark Cunningham (Wed Jul 06 2011 - 12:34:36 CDT)
- Re: Re: Problem with for loop. Sara baretller (Thu Jul 07 2011 - 08:08:42 CDT)
- RE: Re: Problem with for loop. Mark Cunningham (Thu Jul 07 2011 - 09:22:27 CDT)
- Re: Re: Problem with for loop. Sara baretller (Thu Jul 07 2011 - 16:13:03 CDT)
- Re: Re: Problem with for loop. Axel Kohlmeyer (Thu Jul 07 2011 - 16:59:46 CDT)
- Re: Re: Problem with for loop. Sara baretller (Fri Jul 08 2011 - 10:19:50 CDT)
- Re: Re: Problem with for loop. Sara baretller (Fri Jul 08 2011 - 15:09:16 CDT)
- Re: Problem with for loop. Axel Kohlmeyer (Wed Jul 06 2011 - 10:26:10 CDT)
- Re: Problem with for loop. Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- average radius of cavity over many frames from hole maria goranovic (Wed Jul 06 2011 - 02:28:49 CDT)
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- Installation problem -Solvate mohan maruthi sena (Tue Jun 28 2011 - 23:06:58 CDT)
- Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 12:34:37 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
- Re: Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 18:08:31 CDT)
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- Re: Display Multiple Bond Order Axel Kohlmeyer (Wed Jun 29 2011 - 12:41:50 CDT)
- Re: Display Multiple Bond Order John Stone (Wed Jun 29 2011 - 15:24:24 CDT)
- Re: Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
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- Changing representations on a per-atom per-timestep basis J. Nathan Scott (Tue Jun 28 2011 - 11:34:19 CDT)
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- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 20:02:59 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 20:08:17 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 20:11:47 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 20:17:04 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
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- best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule Sara Biocomputation (Mon Jun 27 2011 - 10:39:30 CDT)
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- Re: color trajectory using specific values rather than color scale J閞鬽e H閚in (Mon Jun 27 2011 - 11:20:41 CDT)
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- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubeti膷 (Tue Jun 07 2011 - 09:02:10 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubeti膷 (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Wed Jun 08 2011 - 03:33:23 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd John Stone (Thu Jun 09 2011 - 16:02:54 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Fri Jun 10 2011 - 04:26:48 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Fri Jun 10 2011 - 04:36:02 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd John Stone (Fri Jun 10 2011 - 09:27:05 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubeti膷 (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubeti膷 (Tue Jun 07 2011 - 09:02:10 CDT)
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- Tachyon post-render commands under Win-XP Daniel Holloway (Mon Jun 06 2011 - 08:50:17 CDT)
- Fw: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sun Jun 05 2011 - 08:06:56 CDT)
- how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Fri Jun 03 2011 - 22:27:58 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:27:05 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 13:09:48 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 21:24:26 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? John Stone (Mon Jun 06 2011 - 13:45:23 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? John Stone (Mon Jun 06 2011 - 13:42:29 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Tue Jun 07 2011 - 04:55:18 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Craig Knox (Mon Jun 06 2011 - 11:33:42 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- questions about RBCG 焦豹 (Fri Jun 03 2011 - 21:27:17 CDT)
- submit VMD_SS script sajad falsafi (Fri Jun 03 2011 - 11:35:20 CDT)
- Invitation to connect on LinkedIn Lucas Fern谩ndez Seivane via LinkedIn (Fri Jun 03 2011 - 02:30:33 CDT)
- submit VMD_SS script sajad falsafi (Fri Jun 03 2011 - 00:59:22 CDT)
- installation trouble Michael Zimmermann (Thu Jun 02 2011 - 23:00:40 CDT)
- For loops decelerate Benjamin Hall (Thu Jun 02 2011 - 03:39:02 CDT)
- charge information for the PMEpot plugin Raul Araya (Wed Jun 01 2011 - 11:48:07 CDT)
- .gro format to .pqr format Mona Habibi (Wed Jun 01 2011 - 10:17:20 CDT)
- Compiling plugins without netcdf Guido Polles (Wed Jun 01 2011 - 10:09:24 CDT)
- Re: [lammps-users] using topotools to view lammps output Axel Kohlmeyer (Wed Jun 01 2011 - 08:48:04 CDT)
- Invitation to connect on LinkedIn masoud Kazemi via LinkedIn (Wed Jun 01 2011 - 07:55:20 CDT)
- problem with bigdcd rmsd calculaton output Bian Li (Mon May 30 2011 - 22:22:48 CDT)
- Issue with NAMD/VMD tutorial Matthew Bick (Mon May 30 2011 - 12:32:29 CDT)
- Save Coordinates for Multiple Loads Qmer_AN?= (Sun May 29 2011 - 09:14:25 CDT)
- Protein cavities BRAULIO VALDEBENITO MATURANA (Sat May 28 2011 - 23:26:02 CDT)
- use variable in atomselect dhacademic (Fri May 27 2011 - 14:55:26 CDT)
- creating psf file seda demirci (Fri May 27 2011 - 10:13:05 CDT)
- Protein cavities BRAULIO FAVI罭 VALDEBENITO MATURANA (Thu May 26 2011 - 12:41:48 CDT)
- tips for an annoying aliasing task? Edward Lyman (Thu May 26 2011 - 10:33:27 CDT)
- measure fit - wrong alignment Eduardo Oliveira (Thu May 26 2011 - 05:56:40 CDT)
- surface of an atomic property Anna Amat (Wed May 25 2011 - 11:44:38 CDT)
- 3Dconnexion SpaceNavigator (OS X) Hans Martin Senn (Wed May 25 2011 - 11:37:51 CDT)
- surface from a generic atomic property Anna Amat (Wed May 25 2011 - 11:15:11 CDT)
- pbctools plugin & protein-bound ligand Irene Newhouse (Tue May 24 2011 - 14:36:12 CDT)
- trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 08:39:08 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubeti膷 (Tue May 24 2011 - 09:48:15 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 John Stone (Tue May 24 2011 - 12:13:07 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Tue May 24 2011 - 14:08:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Wed May 25 2011 - 04:51:02 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Wed May 25 2011 - 05:35:42 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubeti膷 (Wed May 25 2011 - 05:57:10 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Wed May 25 2011 - 06:05:44 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 John Stone (Wed May 25 2011 - 10:18:12 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Mon Jun 06 2011 - 07:36:35 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Tue May 24 2011 - 12:14:39 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubeti膷 (Tue May 24 2011 - 12:22:00 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubeti膷 (Tue May 24 2011 - 09:48:15 CDT)
- size for render Kevin Knoops (Tue May 24 2011 - 06:01:15 CDT)
- vmd calculating wrong number of frames in xtc file using molinfo numframes ? maria goranovic (Mon May 23 2011 - 10:13:08 CDT)
- problem in overlapping atoms Parul tew (Sun May 22 2011 - 05:01:31 CDT)
- Non-cuda version of VMD on Linux? Ismail, Mohd F. (Sat May 21 2011 - 22:02:01 CDT)
- color atom by stress Shaorui Yang (Sat May 21 2011 - 15:23:48 CDT)
- move volume file Lane Votapka (Fri May 20 2011 - 17:11:49 CDT)
- Re: move volume file Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- Mean value of el. potential ? Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
- Re: Mean value of el. potential ? Axel Kohlmeyer (Wed May 25 2011 - 19:51:55 CDT)
- Re: Mean value of el. potential ? Marek Maly (Thu May 26 2011 - 04:29:12 CDT)
- RE: Mean value of el. potential ? Walter Rocchia (Thu May 26 2011 - 06:02:03 CDT)
- Re: Mean value of el. potential ? Marek Maly (Thu May 26 2011 - 06:51:44 CDT)
- Mean value of el. potential ? Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
- Re: move volume file Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- antechamber for Windows Keith Battle (Fri May 20 2011 - 12:48:21 CDT)
- Displaying protein AND ligand from an amber trajectory George Tzotzos (Fri May 20 2011 - 08:31:17 CDT)
- pbc unwrap not complete Nicola Giacche' (Fri May 20 2011 - 08:05:40 CDT)
- Problems with APBS calculations Ramon Garduno-Juarez (Thu May 19 2011 - 20:51:53 CDT)
- Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 10:43:10 CDT)
- Re: Aligning two proteins of varying atom numbers Axel Kohlmeyer (Thu May 19 2011 - 11:17:37 CDT)
- Re: Aligning two proteins of varying atom numbers Joseph Bylund (Thu May 19 2011 - 11:31:52 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 11:37:40 CDT)
- Re: Aligning two proteins of varying atom numbers Eduard Schreiner (Thu May 19 2011 - 12:07:00 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 04:23:12 CDT)
- Re: Aligning two proteins of varying atom numbers Axel Kohlmeyer (Fri May 20 2011 - 05:47:18 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 06:37:47 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 09:04:53 CDT)
- Re: Aligning two proteins of varying atom numbers Gianluca Interlandi (Fri May 20 2011 - 11:26:25 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Sun May 22 2011 - 16:25:11 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 11:37:40 CDT)
- indentified particular water molecule Sangita Kachhap (Thu May 19 2011 - 07:24:03 CDT)
- aligning multiple trajectories to a single .pdb file andrew ritchie (Wed May 18 2011 - 13:30:54 CDT)
- problem merging two identical proteins juan jesus sanchez sanchez (Wed May 18 2011 - 12:32:09 CDT)
- reading .vel files and .veldcd files Mao Mao (Wed May 18 2011 - 10:50:46 CDT)
- run and close vmd with bash script? Jorgen Simonsen (Wed May 18 2011 - 07:04:26 CDT)
- hi to all kanchi subbarao rao (Tue May 17 2011 - 11:34:04 CDT)
- Tkcon on at startup Qmer_AN?= (Tue May 17 2011 - 11:00:19 CDT)
- Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? jnsong (Tue May 17 2011 - 08:54:54 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? Axel Kohlmeyer (Tue May 17 2011 - 09:44:26 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? John Stone (Tue May 17 2011 - 10:09:55 CDT)
- convert prmtop to psf Jorgen Simonsen (Tue May 17 2011 - 04:17:33 CDT)
- Re: error in movie generator Esam Tolba (Tue May 17 2011 - 03:57:06 CDT)
- velocity profile Mao Mao (Mon May 16 2011 - 10:45:55 CDT)
- error in movie generator Esam Tolba (Mon May 16 2011 - 10:01:27 CDT)
- sharing atoms beyza bilgic (Mon May 16 2011 - 08:52:33 CDT)
- Secondary Structure Disappears after Molecule Move Qmer_AN?= (Mon May 16 2011 - 05:45:21 CDT)
- pbc wrap cnu gromacs (Fri May 13 2011 - 13:50:30 CDT)
- PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Fri May 13 2011 - 04:49:14 CDT)
- AW: PhD position in Computational Structural Biology at MPI Muenster Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Ajasja Ljubeti膷 (Fri May 13 2011 - 07:04:26 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Wendy Gonz醠ez (Fri May 13 2011 - 07:54:29 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Bjoern Olausson (Fri May 13 2011 - 13:23:05 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Olaf Lenz (Sun May 15 2011 - 10:34:40 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Axel Kohlmeyer (Sun May 15 2011 - 11:51:22 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Sun May 15 2011 - 13:47:01 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Gianluca Interlandi (Sun May 15 2011 - 14:42:22 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Axel Kohlmeyer (Sun May 15 2011 - 16:47:40 CDT)
- AW: PhD position in Computational Structural Biology at MPI Muenster Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 13:28:48 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- RE: Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 18:48:11 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 19:40:17 CDT)
- RE: Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Fri May 13 2011 - 06:41:40 CDT)
- Re: Compiling plugins without netcdf support returns an error. John Stone (Thu May 12 2011 - 15:58:12 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 13:16:46 CDT)
- Re: Large positive non-integer charge Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Re: Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 14:16:14 CDT)
- RE: Large positive non-integer charge David A. Horita (Thu May 12 2011 - 16:51:39 CDT)
- Re: Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 18:03:12 CDT)
- Re: Large positive non-integer charge John Stone (Tue May 17 2011 - 11:03:29 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 16:06:32 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Re: Large positive non-integer charge Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Atom ID/Color change with timesteps Adkins, Laura R (Wed May 11 2011 - 19:17:05 CDT)
- May 18th, Late abstract submission deadline for 3Dsig Structural Bioinformatics & Computational Biophysics 3D SIG (Wed May 11 2011 - 16:57:22 CDT)
- command for volume slice? Jennifer Williams (Wed May 11 2011 - 08:16:25 CDT)
- changing the color of Sn atom beyza bilgic (Wed May 11 2011 - 06:12:50 CDT)
- changing the color of Sn atom Beyza Bilgi (Wed May 11 2011 - 05:24:31 CDT)
- to change color of Sn atom Beyza Bilgi (Wed May 11 2011 - 04:33:51 CDT)
- to change color of Sn atom Beyza Bilgi (Wed May 11 2011 - 04:28:07 CDT)
- save coordinate POSCAR Haijun (Tue May 10 2011 - 12:56:09 CDT)
- apbs with vmd, no output Asmaa Elsheshiny (Tue May 10 2011 - 12:14:08 CDT)
- bad window parameter -- SOLVED Robert Wohlhueter (Tue May 10 2011 - 10:16:48 CDT)
- Calculating RMSD on two sets of points Carolyn Phillips (Tue May 10 2011 - 09:57:25 CDT)
- bad window parameter Robert Wohlhueter (Tue May 10 2011 - 09:27:34 CDT)
- trajectory of water within 5 A of protein maria goranovic (Tue May 10 2011 - 02:27:58 CDT)
- SASA calculation Aditya Padhi (Mon May 09 2011 - 05:26:36 CDT)
- plotting spin density Olesya Haze (Thu May 05 2011 - 18:17:50 CDT)
- CAVE and Flystick control David Joiner (Wed May 04 2011 - 14:52:34 CDT)
- Fwd: molefacture "force tetrahedral" failure: SOLVED with chimera-vmd Francesco Pietra (Wed May 04 2011 - 02:45:21 CDT)
- molefacture "force tetrahedral" failure Francesco Pietra (Wed May 04 2011 - 01:33:01 CDT)
- Visualization of coarse grained molecule with coarse_grain.tcl Paolo Conflitti (Tue May 03 2011 - 10:10:41 CDT)
- RE: SASA calculation using periodic images? Jesper S鴕ensen (Tue May 03 2011 - 08:38:29 CDT)
- SASA calculation using periodic images? Jesper S酶rensen (Tue May 03 2011 - 06:14:31 CDT)
- Cartoons and secondary structure prediction Francisco Jos Taberner Sanchis (Tue May 03 2011 - 05:51:24 CDT)
- Problem with cartoon and secondary structure Francisco Jos Taberner Sanchis (Tue May 03 2011 - 05:13:18 CDT)
- Fwd: Problem with cartoon and secondary structure Francisco Jos Taberner Sanchis (Tue May 03 2011 - 03:26:18 CDT)
- Generate psf file for cyclic peptide Tu.Le_at_csiro.au (Mon May 02 2011 - 22:33:01 CDT)
- desmond trajectory plugin Davide Provasi (Mon May 02 2011 - 10:40:30 CDT)
- VMD Movie Generator problem with "Image smoothing" set Bjoern Olausson (Mon May 02 2011 - 06:26:54 CDT)
- VMD- Ra Measurement Saurav Goel (Sun May 01 2011 - 19:43:28 CDT)
- Reconstruction of XST data from DCD data B.M.B. Vanschouwen (Sun May 01 2011 - 19:29:03 CDT)
- X & Y co-ordinate data ban arn (Sun May 01 2011 - 11:27:39 CDT)
- question regarding H-bond calculation juzer stationwala (Sun May 01 2011 - 10:31:55 CDT)
- Save molecule in pdb format Moutusi Manna (Sat Apr 30 2011 - 01:43:55 CDT)
- Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field DreamCatcher (Fri Apr 29 2011 - 07:48:18 CDT)
- hello kanchi subbarao rao (Fri Apr 29 2011 - 05:58:05 CDT)
- request to know about bonds in between carbon atoms in carbon nanotubes safron saif (Fri Apr 29 2011 - 03:54:53 CDT)
- coloring by gradient Rodolfo Pereyra (Thu Apr 28 2011 - 15:36:51 CDT)
- HOW TO PARAMETRIZE A LIGAND shome sankar bhunia (Thu Apr 28 2011 - 04:53:12 CDT)
- hello kanchi subbarao rao (Thu Apr 28 2011 - 01:38:36 CDT)
- running plugin from the command line Sara Nichols (Wed Apr 27 2011 - 14:49:33 CDT)
- making a movie Moeed (Tue Apr 26 2011 - 17:58:06 CDT)
- RE: RE: New NAMD version 2011-03-03 uses Ada Zhan (Fri Apr 22 2011 - 16:04:52 CDT)
- RE: New NAMD version 2011-03-03 uses Ada Zhan (Fri Apr 22 2011 - 13:35:30 CDT)
- psfgen: error processing bonds Edward Lyman (Fri Apr 22 2011 - 10:03:30 CDT)
- Re: psfgen: error processing bonds John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Tue Apr 26 2011 - 11:43:56 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Tue Apr 26 2011 - 14:21:01 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Fri Apr 29 2011 - 08:00:52 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Fri Apr 29 2011 - 08:12:56 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Fri Apr 29 2011 - 08:40:55 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Fri Apr 29 2011 - 14:30:53 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Fri Apr 29 2011 - 15:11:54 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sat Apr 30 2011 - 10:16:16 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sat Apr 30 2011 - 10:39:47 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Sat Apr 30 2011 - 10:45:17 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sun May 01 2011 - 16:14:33 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Sun May 01 2011 - 16:20:45 CDT)
- Re: psfgen: error processing bonds John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 04:10:07 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 11:17:02 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 11:49:02 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 12:15:30 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 13:54:04 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 15:02:48 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 22:53:01 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Fri Apr 22 2011 - 03:52:48 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:37:31 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- Installation/Upgrade Error Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:57:49 CDT)
- RE: Generating Topo Bond Data from LAMMPS Data File Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:30:52 CDT)
- Generating Topo Bond Data from LAMMPS Data File Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 10:23:29 CDT)
- generating .xsc files using periodic information Neelanjana Sengupta (Wed Apr 20 2011 - 07:06:04 CDT)
- Re: generating .xsc files using periodic information John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Re: generating .xsc files using periodic information Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: generating .xsc files using periodic information Jim Phillips (Tue Apr 26 2011 - 11:35:43 CDT)
- Re: generating .xsc files using periodic information Neelanjana Sengupta (Tue Apr 26 2011 - 23:07:07 CDT)
- Re: generating .xsc files using periodic information Jim Phillips (Tue Apr 26 2011 - 23:16:46 CDT)
- Re: generating .xsc files using periodic information Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: generating .xsc files using periodic information John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Simple Question regarding psf generation Christian Wohlschlager (Tue Apr 19 2011 - 08:09:15 CDT)
- waters selection agustina_at_cabm.rutgers.edu (Mon Apr 18 2011 - 15:49:09 CDT)
- mdf molfile plugin reader atom_type bug Craig Knox (Mon Apr 18 2011 - 13:03:51 CDT)
- compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 00:14:59 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:16:45 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 08:27:05 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:34:54 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 08:45:41 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:51:28 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 09:20:16 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 11:16:56 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: Res: webpdb load problem John Stone (Fri Apr 15 2011 - 15:51:38 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st) 3D SIG (Fri Apr 15 2011 - 14:38:03 CDT)
- Replica Exchange alamng_at_uci.edu (Fri Apr 15 2011 - 02:35:05 CDT)
- Question about SASA Sebastian Maximilian Wilhelm (Thu Apr 14 2011 - 10:31:34 CDT)
- Re: using vmd to view gromacs trajectory bharat gupta (Thu Apr 14 2011 - 10:20:29 CDT)
- Recent Geforce Cuda GPU cards(GT 440, GTX 560ti) Burgess, Don E (Wed Apr 13 2011 - 11:26:02 CDT)
- X3DOM sphere resolution Joshua A. Anderson (Wed Apr 13 2011 - 07:09:37 CDT)
- webpdb load problem tiago sobreira (Tue Apr 12 2011 - 13:48:29 CDT)
- moving rotational center to display center Joseph Bylund (Tue Apr 12 2011 - 12:01:27 CDT)
- NMWiz - a new VMD plugin Ahmet Bakan (Tue Apr 12 2011 - 11:51:36 CDT)
- Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 06:14:36 CDT)
- Re: Tcl plugin development and debugging John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 10:38:19 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 10:49:32 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 10:56:17 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 11:21:56 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 11:38:34 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 11:55:16 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 12:05:24 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 12:11:47 CDT)
- Re: Tcl plugin development and debugging Ahmet Bakan (Tue Apr 12 2011 - 11:38:57 CDT)
- RE: Tcl plugin development and debugging Goldsmith, Jacob (Tue Apr 12 2011 - 11:57:28 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
- Re: Tcl plugin development and debugging John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
- trajectory generation using gaussian cube files Vamsee Voora (Mon Apr 11 2011 - 15:53:33 CDT)
- box vectores in .trr leila karami (Sat Apr 09 2011 - 08:44:04 CDT)
- measuring the orientation of a small a-helix Raul Araya (Wed Apr 06 2011 - 16:23:29 CDT)
- electrostatic potential maps. Raul Araya (Wed Apr 06 2011 - 13:13:58 CDT)
- 2D Contour plot ban arn (Wed Apr 06 2011 - 05:06:09 CDT)
- vectors box in .trr file leila karami (Wed Apr 06 2011 - 02:49:24 CDT)
- Transparent image render problem after vmd 1.9 version Bongkeun Kim (Wed Apr 06 2011 - 01:22:21 CDT)
- recenter Mark M Huntress (Sun Apr 03 2011 - 16:34:17 CDT)
- Fwd: (my) problems using molefacture dihedral Francesco Pietra (Sun Apr 03 2011 - 09:14:44 CDT)
- problem on rmsdtt masoud kazemi (Sun Apr 03 2011 - 08:52:22 CDT)
- Fwd: (my) problems using molefacture dihedral Francesco Pietra (Sun Apr 03 2011 - 08:49:53 CDT)
- (my) problems using molefacture dihedral Francesco Pietra (Sat Apr 02 2011 - 15:36:21 CDT)
- Water Models Chathurika Abeyrathne (Sat Apr 02 2011 - 02:43:29 CDT)
- How to create bonds in VMD? Saketh Bharadwaja (Fri Apr 01 2011 - 11:07:21 CDT)
- 璁块棶鎴戠殑鍥剧墖 妤氶湼澶╀笅 (Fri Apr 01 2011 - 02:14:16 CDT)
- script problem Mark M Huntress (Thu Mar 31 2011 - 15:32:33 CDT)
- Rotating and saving coordinates of a copy of molecule alongwith original molecule Sujata Sovani (Thu Mar 31 2011 - 13:18:54 CDT)
- Reverse Mapping of RBCG Model Sibel Cakan (Wed Mar 30 2011 - 07:39:51 CDT)
- viewing trajectory Moeed (Tue Mar 29 2011 - 18:44:43 CDT)
- how to mark regions in Multiseq Irene Newhouse (Mon Mar 28 2011 - 19:35:31 CDT)
- Generate a PSF file for small, simple molecules THANH NGUYEN (Mon Mar 28 2011 - 19:11:42 CDT)
- phi-psi plot Ramya Narasimhan (Mon Mar 28 2011 - 05:29:01 CDT)
- Selecting atoms based on 'type' with LAMMPS + PSF Taco de Wolff (Mon Mar 28 2011 - 05:02:10 CDT)
- size of box Moeed (Mon Mar 28 2011 - 01:10:54 CDT)
- Invitation to connect on LinkedIn Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:26:07 CDT)
- Ma Ming wants to stay in touch on LinkedIn Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:21:55 CDT)
- Invitation to connect on LinkedIn ram prasad via LinkedIn (Sun Mar 27 2011 - 12:38:16 CDT)
- How to add iond for RBCG model maming10002000 (Sun Mar 27 2011 - 10:23:27 CDT)
- How to add ions for RBCG maming10002000 (Sun Mar 27 2011 - 09:56:02 CDT)
- Software to create 3D PDF documents Petridis, Loukas (Fri Mar 25 2011 - 14:03:03 CDT)
- Save Coordinates Question ... Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:34:01 CDT)
- Save Coordinates Question ... Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:22:50 CDT)
- how to convert X_PLOR to CHARMM? Lisa Brown (Fri Mar 25 2011 - 11:01:26 CDT)
- CHARMM parameters for Mn 2+ ion Lisa Brown (Fri Mar 25 2011 - 10:43:45 CDT)
- NAMDenergy calculation shome sankar bhunia (Fri Mar 25 2011 - 08:28:50 CDT)
- measure dipole Donovan B.T. (Thu Mar 24 2011 - 13:07:28 CDT)
- Re: measure dipole Axel Kohlmeyer (Thu Mar 24 2011 - 13:53:10 CDT)
- Re: measure dipole Pawe艂 K臋dzierski (Fri Mar 25 2011 - 02:55:54 CDT)
- RE: measure dipole Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
- Re: measure dipole John Stone (Fri Mar 25 2011 - 09:11:24 CDT)
- RE: measure dipole Donovan B.T. (Mon Mar 28 2011 - 08:26:36 CDT)
- Re: measure dipole John Stone (Mon Mar 28 2011 - 15:52:54 CDT)
- Re: measure dipole Jernej Zidar (Tue Mar 29 2011 - 02:16:54 CDT)
- RE: measure dipole Donovan B.T. (Wed Mar 30 2011 - 08:16:53 CDT)
- Re: measure dipole Ajasja Ljubeti膷 (Wed Mar 30 2011 - 09:16:21 CDT)
- Re: measure dipole Axel Kohlmeyer (Fri Mar 25 2011 - 09:14:47 CDT)
- RE: measure dipole Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
- How can I operate on multiple .pdb structures in a list Anna Kuznetsova (Wed Mar 23 2011 - 18:49:02 CDT)
- Error starting second VMD J閞鬽e H閚in (Wed Mar 23 2011 - 09:40:20 CDT)
- Re: Error starting second VMD John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
- Re: Error starting second VMD J閞鬽e H閚in (Fri Mar 25 2011 - 04:40:04 CDT)
- Re: Error starting second VMD John Stone (Fri Mar 25 2011 - 09:05:39 CDT)
- Re: Error starting second VMD J閞鬽e H閚in (Fri Mar 25 2011 - 09:19:59 CDT)
- Re: Error starting second VMD John Stone (Mon Mar 28 2011 - 16:04:34 CDT)
- Re: Error starting second VMD J閞鬽e H閚in (Mon Mar 28 2011 - 17:33:59 CDT)
- Re: Error starting second VMD John Stone (Tue Apr 19 2011 - 22:26:56 CDT)
- Re: Error starting second VMD J閞鬽e H閚in (Fri Mar 25 2011 - 04:40:04 CDT)
- Re: Error starting second VMD John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st). 3D SIG (Wed Mar 23 2011 - 06:15:19 CDT)
- Color wheel gradient Jonathan KHAO (Tue Mar 22 2011 - 12:57:08 CDT)
- Fwd: charmmgen to autopsf Francesco Pietra (Tue Mar 22 2011 - 11:03:05 CDT)
- VMD 1.9 builds on MACOSXX86_64 Joshua A. Anderson (Tue Mar 22 2011 - 08:55:00 CDT)
- Fwd: Re: script for projection of c-alpha atom cordinates on xy plane Pawe艂 K臋dzierski (Tue Mar 22 2011 - 08:19:14 CDT)
- How to maximize the VMD display window Yingzhe Liu (Tue Mar 22 2011 - 02:10:48 CDT)
- Fwd: charmmgen to autopsf Francesco Pietra (Mon Mar 21 2011 - 07:20:00 CDT)
- charmmgen to autopsf Francesco Pietra (Mon Mar 21 2011 - 05:12:05 CDT)
- Problem with using bigdcd.tcl jnsong (Sun Mar 20 2011 - 22:38:01 CDT)
- ANALYZING DESMOND OUTPUT IN VMD shome sankar bhunia (Sun Mar 20 2011 - 03:55:58 CDT)
- "non-grid" volumetric data Xiaogang Wang (Sat Mar 19 2011 - 01:23:32 CDT)
- script for projection of c-alpha atom cordinates on xy plane ban arn (Fri Mar 18 2011 - 12:58:19 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Joseph Bylund (Fri Mar 18 2011 - 13:39:37 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Pawe艂 K臋dzierski (Fri Mar 18 2011 - 15:17:31 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane J. Rui Rodrigues (Mon Mar 21 2011 - 12:12:28 CDT)
- RE: script for projection of c-alpha atom cordinates on xy plane Mark Cunningham (Mon Mar 21 2011 - 13:56:12 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Pawe艂 K臋dzierski (Tue Mar 22 2011 - 04:11:53 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Tue Mar 22 2011 - 05:00:42 CDT)
- RE: script for projection of c-alpha atom cordinates on xy plane Mark Cunningham (Tue Mar 22 2011 - 07:56:34 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
- SV: Authentication error VMD-xplor Robert Dagil (Fri Mar 18 2011 - 10:13:23 CDT)
- Authentication error VMD-xplor Robert Dagil (Fri Mar 18 2011 - 07:46:07 CDT)
- Hbond rendering issue with VMD 1.9 Nicolas Sapay (Fri Mar 18 2011 - 04:58:27 CDT)
- Molden format plugin Ignacio Fern醤dez Galv醤 (Thu Mar 17 2011 - 11:12:33 CDT)
- to block the information appearing during the run Ramya Narasimhan (Thu Mar 17 2011 - 06:14:24 CDT)
- Re: .pdbqt file type Francesco Pietra (Thu Mar 17 2011 - 02:38:19 CDT)
- segid & chain id Francesco Pietra (Thu Mar 17 2011 - 02:27:23 CDT)
- calculation of binding energy vani panguluri (Wed Mar 16 2011 - 23:06:45 CDT)
- TCL Callbacks Julia Doh (Wed Mar 16 2011 - 13:45:31 CDT)
- Question about vdW-area Sebastian Maximilian Wilhelm (Wed Mar 16 2011 - 12:40:43 CDT)
- pdb file with different number of molecules Peyman Z.Moghadam (Wed Mar 16 2011 - 12:30:53 CDT)
- .pdbqt file type Francesco Pietra (Wed Mar 16 2011 - 12:15:51 CDT)
- MSD calculation from VMD RMSD plugin. Ranyere Deyler (Wed Mar 16 2011 - 09:24:54 CDT)
- Problem with using bigdcd.tcl jnsong (Tue Mar 15 2011 - 21:42:10 CDT)
- vmd for mac: range in isosurface representation Passerone, Daniele (Tue Mar 15 2011 - 04:34:48 CDT)
- Announce VMD 1.9 released John Stone (Mon Mar 14 2011 - 16:49:37 CDT)
- Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 11:52:49 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Mon Mar 14 2011 - 16:22:58 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:49:11 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 18:08:53 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Fri Mar 18 2011 - 08:55:33 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Fri Mar 18 2011 - 10:13:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Fri Mar 18 2011 - 11:14:31 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Fri Mar 18 2011 - 11:21:56 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Fri Mar 18 2011 - 11:25:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- zero box vector leila karami (Sun Mar 13 2011 - 10:14:49 CDT)
- time line leila karami (Sat Mar 12 2011 - 03:19:52 CST)
- zero box vector leila karami (Sat Mar 12 2011 - 00:50:40 CST)
- count CLA number from different frames emiliawu_at_dicp.ac.cn (Sat Mar 12 2011 - 07:16:32 CST)
- snow leopard CUDA and VMD 1.9 Passerone, Daniele (Fri Mar 11 2011 - 09:29:30 CST)
- tcl script ban arn (Fri Mar 11 2011 - 09:06:00 CST)
- 2 Issues in VMD 1.9 beta3 hanif mahboobi (Fri Mar 11 2011 - 06:10:30 CST)
- problem on making a movie Jun Cheng (Fri Mar 11 2011 - 04:42:34 CST)
- Re: problem on making a movie Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- RE: problem on making a movie Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Re: problem on making a movie Jun Cheng (Fri Mar 11 2011 - 09:36:49 CST)
- Re: problem on making a movie John Stone (Fri Mar 11 2011 - 10:31:21 CST)
- Re: problem on making a movie Jun Cheng (Fri Mar 11 2011 - 12:26:13 CST)
- Re: problem on making a movie John Stone (Fri Mar 11 2011 - 12:37:14 CST)
- Re: problem on making a movie Jun Cheng (Tue Mar 15 2011 - 08:42:09 CDT)
- Re: problem on making a movie John Stone (Tue Mar 15 2011 - 14:14:04 CDT)
- Re: problem on making a movie Jun Cheng (Wed Mar 16 2011 - 18:16:44 CDT)
- RE: problem on making a movie Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Re: problem on making a movie Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- Not calculate bonds by default. Eric Germaneau (Fri Mar 11 2011 - 07:12:04 CST)
- zero box vector leila karami (Thu Mar 10 2011 - 11:27:59 CST)
- psf and top Francesco Oteri (Thu Mar 10 2011 - 09:10:05 CST)
- zero box vector leila karami (Thu Mar 10 2011 - 08:04:14 CST)
- Triclinic boxes in VMD using the LAMMPS file format Taco de Wolff (Thu Mar 10 2011 - 06:36:22 CST)
- Zero box vector leila karami (Thu Mar 10 2011 - 06:11:56 CST)
- tcl script menica dibenedetto (Wed Mar 09 2011 - 08:32:25 CST)
- VMD beta3 windows installer Ajasja Ljubeti膷 (Wed Mar 09 2011 - 08:21:46 CST)
- VMD and Kinect Olaf Lenz (Wed Mar 09 2011 - 05:30:16 CST)
- Extra bond in TIP3 water Julie Grouleff (Wed Mar 09 2011 - 04:56:53 CST)
- ERROR vani panguluri (Wed Mar 09 2011 - 00:11:59 CST)
- how to make default background color to white Sushil Mishra (Tue Mar 08 2011 - 09:11:33 CST)
- measure energy elect vs. NAMDenergy Sebastian Maximilian Wilhelm (Tue Mar 08 2011 - 05:21:10 CST)
- Fwd: Re: namd-l: hBond colvars and patching Francesco Pietra (Tue Mar 08 2011 - 00:34:36 CST)
- VMD 1.9 beta 3 posted for download... John Stone (Mon Mar 07 2011 - 14:53:43 CST)
- Re: VMD 1.9 beta 3 posted for download... Cesar Millan (Mon Mar 07 2011 - 15:47:47 CST)
- Re: (Minnesota Supercomputing Institute Install) VMD 1.9 beta 3 posted for download... nlabello (Tue Mar 08 2011 - 16:00:25 CST)
- request help about hbond hamid mosaddeghi (Mon Mar 07 2011 - 13:20:13 CST)
- Fwd: ACS awards information John Stone (Mon Mar 07 2011 - 10:45:17 CST)
- request help about hbond hamid mosaddeghi (Mon Mar 07 2011 - 09:06:20 CST)
- Re: namd-l: hBond colvars and patching Francesco Pietra (Mon Mar 07 2011 - 00:12:54 CST)
- hBond colvars and patching Francesco Pietra (Sun Mar 06 2011 - 14:05:47 CST)
- Android support Dow Hurst (Sun Mar 06 2011 - 11:24:15 CST)
- hBond component in colvars and patching Francesco Pietra (Sat Mar 05 2011 - 14:38:45 CST)
- view temperature, forces and velocities alberto baldelli (Fri Mar 04 2011 - 09:35:18 CST)
- Re: public VMD cvs server John Stone (Fri Mar 04 2011 - 09:13:10 CST)
- Bug in VMD? Sujata Sovani (Thu Mar 03 2011 - 12:15:16 CST)
- capping or patching protein ends Ashlynne Monroe (Thu Mar 03 2011 - 10:40:37 CST)
- Mutator Plugin Patching Thomas Freeman (Wed Mar 02 2011 - 15:27:21 CST)
- Installing VMD 1.8.7 on i686/SL5 David Huggins (Wed Mar 02 2011 - 07:38:14 CST)
- Error in coordinate information of PDB file after merging nabaneeta mukhopadhyay (Wed Mar 02 2011 - 00:50:42 CST)
- VMD.RC Question Phelan Jr., Frederick R. Dr. (Tue Mar 01 2011 - 14:33:45 CST)
- question about the inorganic builder Mao Mao (Tue Mar 01 2011 - 11:30:53 CST)
- Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:16:18 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:38:20 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:53:49 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:54:55 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Axel Kohlmeyer (Tue Mar 01 2011 - 11:23:36 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 11:28:30 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 11:50:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Axel Kohlmeyer (Tue Mar 01 2011 - 12:33:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 12:32:51 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Wed Mar 02 2011 - 09:40:13 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Wed Mar 02 2011 - 10:07:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Wed Mar 02 2011 - 10:14:31 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Wed Mar 02 2011 - 12:46:57 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Thu Mar 03 2011 - 13:28:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- VMD 1.9 beta 2 posted for download... John Stone (Mon Feb 28 2011 - 21:44:36 CST)
- TCL Related Question Phelan Jr., Frederick R. Dr. (Mon Feb 28 2011 - 21:34:31 CST)
- Can paratools really parametrize a structure? Is it really finished? Ranyere Deyler (Mon Feb 28 2011 - 10:55:21 CST)
- surf fails with TIP4P water in VMD 1.9b1 chris.neale_at_utoronto.ca (Mon Feb 28 2011 - 10:52:08 CST)
- Drawing Bonds in Periodic structure soumyajyoti haldar (Mon Feb 28 2011 - 10:07:32 CST)
- ERROR: graphics: color index value '1057' out of range Jervis Chu (Sun Feb 27 2011 - 08:41:00 CST)
- pot.dx question Robin Varghese (Sat Feb 26 2011 - 15:43:35 CST)
- pot.dx file question Robin Varghese (Sat Feb 26 2011 - 15:42:04 CST)
- Pot.dx files Robin Varghese (Sat Feb 26 2011 - 15:02:14 CST)
- Server for structural models of the unfolded state of proteins Samy Hamdouche (Fri Feb 25 2011 - 19:03:15 CST)
- lindex related question Pavan Ghatty (Fri Feb 25 2011 - 15:09:45 CST)
- showing fixed number of frames as the animation Lin, Kan-Ju (Fri Feb 25 2011 - 13:27:26 CST)
- Paratool`s error reading single point calculation. Ranyere Deyler (Fri Feb 25 2011 - 13:24:42 CST)
- Adding bonds between many metal atoms Qiang Fu (Fri Feb 25 2011 - 09:48:45 CST)
- Fwd: autopsf-patches C++ error 'expected integer but got "" ""' SOLVED, MY FAULT Francesco Pietra (Fri Feb 25 2011 - 07:59:56 CST)
- package psfgen: Failed to set coordinates for C3 Sebastian Maximilian Wilhelm (Fri Feb 25 2011 - 05:30:45 CST)
- Intel HD Graphics and VMD Peixi Zhu (Thu Feb 24 2011 - 22:28:40 CST)
- Using the MovieMaker Phelan Jr., Frederick R. Dr. (Thu Feb 24 2011 - 15:52:28 CST)
- Area per lipid snoze pa (Thu Feb 24 2011 - 12:35:30 CST)
- vmd1.9beta1 Bennion, Brian (Wed Feb 23 2011 - 14:21:51 CST)
- feature request Francesco Oteri (Wed Feb 23 2011 - 15:37:34 CST)
- Re: vmd1.9beta1 Peter Freddolino (Wed Feb 23 2011 - 19:30:06 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Thu Feb 24 2011 - 21:03:43 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Fri Feb 25 2011 - 10:45:04 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Fri Feb 25 2011 - 20:09:45 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Mon Feb 28 2011 - 16:06:28 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Mon Feb 28 2011 - 19:07:10 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
- RMSF measurement Alex Liu (Wed Feb 23 2011 - 12:51:16 CST)
- abuot avpos emiliawu_at_dicp.ac.cn (Thu Feb 24 2011 - 00:57:00 CST)
- autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:21:11 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:34:09 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:47:31 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 15:03:16 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 16:54:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Peter Freddolino (Thu Feb 24 2011 - 21:28:18 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:34:09 CST)
- Incorrect results from 'measure dipole -masscenter' St閜hane Pezennec (Wed Feb 23 2011 - 07:24:02 CST)
- how to write out the dcd file by vmd python command? mjyang (Mon Feb 21 2011 - 22:40:48 CST)
- how to write out the dcd file by vmd python command? mjyang (Mon Feb 21 2011 - 22:09:17 CST)
- Drawing using variables Phelan Jr., Frederick R. Dr. (Mon Feb 21 2011 - 16:01:52 CST)
- memory leak 1.8.7 and 1.9b1 Tim Meyer (Mon Feb 21 2011 - 09:13:18 CST)
- Application Error while use of Auto PSF Builder Sebastian Wilhelm (Sun Feb 20 2011 - 07:54:35 CST)
- atoms selection Iman Salehinia (Sat Feb 19 2011 - 16:33:27 CST)
- ParaTool alamng_at_uci.edu (Sat Feb 19 2011 - 15:43:36 CST)
- scripts CGTools menica dibenedetto (Fri Feb 18 2011 - 05:11:05 CST)
- Compiling on Windows David Joiner (Thu Feb 17 2011 - 14:12:44 CST)
- Re: Compiling on Windows John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- Re: Compiling on Windows David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- Re: Compiling on Windows Ajasja Ljubeti膷 (Fri Feb 18 2011 - 04:03:41 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 10:06:44 CST)
- Re: Compiling on Windows Ajasja Ljubeti膷 (Fri Feb 18 2011 - 11:07:59 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 11:51:14 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 11:57:33 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 12:17:38 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 12:29:42 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 15:29:45 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 22:10:37 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 22:19:44 CST)
- Re: Compiling on Windows David Joiner (Sat Feb 19 2011 - 00:07:25 CST)
- Re: Compiling on Windows David Joiner (Mon Feb 21 2011 - 21:09:09 CST)
- Re: Compiling on Windows John Stone (Mon Feb 21 2011 - 21:28:02 CST)
- Re: Compiling on Windows David Joiner (Mon Feb 21 2011 - 21:42:48 CST)
- Re: Compiling on Windows John Stone (Mon Feb 21 2011 - 21:51:33 CST)
- Re: Compiling on Windows David Joiner (Tue Feb 22 2011 - 22:06:24 CST)
- Re: Compiling on Windows John Stone (Tue Feb 22 2011 - 22:09:56 CST)
- Re: Compiling on Windows David Joiner (Wed Feb 23 2011 - 10:20:35 CST)
- Re: Compiling on Windows John Stone (Wed Feb 23 2011 - 10:31:18 CST)
- Re: Compiling on Windows David Joiner (Wed Feb 23 2011 - 20:30:48 CST)
- Re: Compiling on Windows David Joiner (Wed Mar 23 2011 - 11:14:26 CDT)
- Re: Compiling on Windows John Stone (Thu Mar 24 2011 - 21:38:45 CDT)
- Re: Compiling on Windows David Joiner (Wed Mar 30 2011 - 10:04:46 CDT)
- Re: Compiling on Windows David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- Re: Compiling on Windows John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- VMD Volmap ILS Error & Orient Function larac_at_berkeley.edu (Thu Feb 17 2011 - 12:13:40 CST)
- RE: VMD 1.9 beta 1 posted for download... Julie Grouleff (Thu Feb 17 2011 - 09:21:49 CST)
- Dynamically updating water colors for each frame of a trajectory J. Nathan Scott (Wed Feb 16 2011 - 17:17:28 CST)
- PBC & Solvate Tool in VMD Sharlene Denos (Wed Feb 16 2011 - 00:03:36 CST)
- PBC Option With Solvate Tool Sharlene Denos (Tue Feb 15 2011 - 23:31:00 CST)
- VMD 1.9 beta 1 posted for download... John Stone (Tue Feb 15 2011 - 19:26:31 CST)
- Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 16 2011 - 11:21:31 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Vlad Cojocaru (Wed Feb 16 2011 - 15:11:06 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Bjoern Olausson (Thu Feb 17 2011 - 05:37:48 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Joseph Bylund (Fri Feb 18 2011 - 11:19:38 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Fri Feb 18 2011 - 11:54:35 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Peter C. Lai (Tue Feb 22 2011 - 12:39:00 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Tue Feb 22 2011 - 12:45:55 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Peter C. Lai (Tue Feb 22 2011 - 12:51:56 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 23 2011 - 00:11:12 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... J閞鬽e H閚in (Wed Feb 23 2011 - 03:47:20 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 23 2011 - 15:05:00 CST)
- Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 16 2011 - 11:21:31 CST)
- DOPC membrane snoze pa (Tue Feb 15 2011 - 17:35:24 CST)
- bring z-axis along a new vector dhacademic (Tue Feb 15 2011 - 14:39:04 CST)
- conflict between VMD and Cygwin Li, Liwei (Mon Feb 14 2011 - 18:02:00 CST)
- setting different bond length for different atom pair Debasis Sengupta (Fri Feb 11 2011 - 12:01:44 CST)
- Re: setting different bond length for different atom pair Axel Kohlmeyer (Fri Feb 11 2011 - 13:00:56 CST)
- Re: only one model is displayed Joyce Tan (Fri Feb 11 2011 - 10:50:31 CST)
- only one model is displayed Joyce Tan (Fri Feb 11 2011 - 09:56:39 CST)
- dipole / move (align) St閜hane Pezennec (Fri Feb 11 2011 - 08:25:43 CST)
- One more psfgen question Marc Charendoff (Thu Feb 10 2011 - 15:40:14 CST)
- how to update the selection in NAMDEnergy juan roman (Tue Feb 08 2011 - 20:02:15 CST)
- Re: Fwd: [multiple topology files and resetpsf] Jim Phillips (Tue Feb 08 2011 - 14:49:48 CST)
- psfgen script for VMD 1.8.7 Marc Charendoff (Tue Feb 08 2011 - 12:26:25 CST)
- multiple topology files and resetpsf Goldsmith, Jacob (Tue Feb 08 2011 - 10:11:54 CST)
- Displaying an overlay of multiple structures with VMD B.M.B. Vanschouwen (Tue Feb 08 2011 - 09:19:45 CST)
- VMD Volmap ILS Error larac_at_berkeley.edu (Mon Feb 07 2011 - 18:23:21 CST)
- Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 13:11:57 CST)
- Re: Multiseq in text mode Axel Kohlmeyer (Mon Feb 07 2011 - 19:33:48 CST)
- Re: Multiseq in text mode John Stone (Mon Feb 07 2011 - 20:30:11 CST)
- Re: Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
- Re: Multiseq in text mode J閞鬽e H閚in (Tue Feb 08 2011 - 03:43:39 CST)
- Re: Multiseq in text mode Ekta Khurana (Tue Feb 08 2011 - 08:06:16 CST)
- Re: Multiseq in text mode Leonardo Trabuco (Tue Feb 08 2011 - 08:18:44 CST)
- Re: Multiseq in text mode Anurag Sethi (Tue Feb 08 2011 - 12:11:29 CST)
- Re: Multiseq in text mode Ekta Khurana (Wed Feb 09 2011 - 13:23:19 CST)
- Re: Multiseq in text mode Kirby Vandivort (Tue Feb 08 2011 - 11:49:43 CST)
- Re: Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
- ERROR while using PSF builder vani panguluri (Mon Feb 07 2011 - 11:29:09 CST)
- Helix motions ban arn (Mon Feb 07 2011 - 05:29:31 CST)
- graphical representations over a number of molecule files Stephen Cox (Sun Feb 06 2011 - 14:38:30 CST)
- CA distance command ban arn (Thu Feb 03 2011 - 08:16:14 CST)
- Adding missing residues to a protein sriteja mantha (Wed Feb 02 2011 - 23:40:47 CST)
- CG_MD temperature Sibel Cakan (Wed Feb 02 2011 - 17:56:12 CST)
- a detail about PSFGENv1.4 Seth Tanner (Wed Feb 02 2011 - 12:49:37 CST)
- Re: USING IED for essential dynamics in VMD bharat gupta (Tue Feb 01 2011 - 18:38:39 CST)
- Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 10:49:24 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 14:19:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Thu Feb 03 2011 - 16:00:11 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST John Stone (Thu Feb 03 2011 - 16:10:24 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
- Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 10:15:48 CST)
- water molecule count ban arn (Tue Feb 01 2011 - 08:56:55 CST)
- Side-chain Dihedrals ban arn (Tue Feb 01 2011 - 05:07:19 CST)
- Re: using IED interface in VMD 1.8.7 windows bharat gupta (Tue Feb 01 2011 - 02:51:45 CST)
- How to use VMD script "PorcupinePlot.tcl" B.M.B. Vanschouwen (Mon Jan 31 2011 - 10:46:55 CST)
- vmd draw command for text kaushik lakkaraju (Sun Jan 30 2011 - 12:32:01 CST)
- CG Builder mohamad rahimi (Sun Jan 30 2011 - 03:31:23 CST)
- License question Gianluca Interlandi (Sat Jan 29 2011 - 16:19:27 CST)
- Re: Trouble rendering tranparent atoms with Tachyon Ajasja Ljubeti (Fri Jan 28 2011 - 09:06:11 CST)
- illegal stereo mode Nicolas Belloy (Fri Jan 28 2011 - 08:34:28 CST)
- vrml2 output crashes VTK/Paraview Peter C. Lai (Thu Jan 27 2011 - 19:14:25 CST)
- RE: How can I add bonds ? Germain Salvato Vallverdu (Thu Jan 27 2011 - 14:31:08 CST)
- Warning in the log file candy deck (Thu Jan 27 2011 - 09:28:12 CST)
- Slower FPS in dual monitor systems? Ramon Crehuet (Thu Jan 27 2011 - 07:24:03 CST)
- removing all water molecules ahmet y齦d齬齧 (Thu Jan 27 2011 - 06:51:34 CST)
- Re: removing all water molecules Dudo (Thu Jan 27 2011 - 07:40:16 CST)
- Re: removing all water molecules Axel Kohlmeyer (Thu Jan 27 2011 - 08:08:27 CST)
- Re: removing all water molecules Ajasja Ljubeti膷 (Thu Jan 27 2011 - 07:37:57 CST)
- Re: removing all water molecules Joshua Adelman (Thu Jan 27 2011 - 08:24:09 CST)
- Re: removing all water molecules Salvatore Mario Cosseddu (Thu Jan 27 2011 - 09:14:40 CST)
- a problem about multiplot superdirac (Wed Jan 26 2011 - 20:01:18 CST)
- Question regarding g(r) utility Narayanan Veeraraghavan (Wed Jan 26 2011 - 17:30:33 CST)
- GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build Joshua A. Anderson (Wed Jan 26 2011 - 14:17:05 CST)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build John Stone (Wed Jan 26 2011 - 14:31:53 CST)
- a script for angular distribution David Wedner (Wed Jan 26 2011 - 11:41:51 CST)
- a script for angular distribution David Wedner (Wed Jan 26 2011 - 10:44:34 CST)
- duplicate frames / slow down movie Nicolas Belloy (Tue Jan 25 2011 - 07:50:10 CST)
- Secondary Structure of alkane polymers Manish Agarwal (Mon Jan 24 2011 - 15:43:47 CST)
- How can I add bonds ? Germain Salvato Vallverdu (Mon Jan 24 2011 - 09:01:39 CST)
- draw bond across cell boudary pascal boulet (Thu Jan 20 2011 - 15:47:44 CST)
- question from a tutorial Lisa Brown (Thu Jan 20 2011 - 14:17:29 CST)
- Formats supported by animate write file_type Salvatore Mario Cosseddu (Thu Jan 20 2011 - 10:19:42 CST)
- Displaying Bead and Bonds Phelan Jr., Frederick R. Dr. (Wed Jan 19 2011 - 13:32:48 CST)
- Problem installing vmd in UBUNTU 10.10 Nima Nouri (Sat Jan 15 2011 - 12:55:17 CST)
- Where can I download VMD alpha version Nima Nouri (Sat Jan 15 2011 - 09:30:16 CST)
- problem in extracting frame number dhacademic (Thu Jan 13 2011 - 09:45:16 CST)
- FW: Issues with Paratools and Gaussian Ali, Rejwan (Wed Jan 12 2011 - 11:57:16 CST)
- VTF trajectory from coarse grained ESPReSo simulations. Visualization in Windows. Dudo (Wed Jan 12 2011 - 06:41:27 CST)
- Truncated octahedron Box francesco oteri (Wed Jan 12 2011 - 04:43:17 CST)
- Issues with Paratools and Gaussian Ali, Rejwan (Tue Jan 11 2011 - 14:51:18 CST)
- namd energy plugin error: toplevel Michela Candotti (Tue Jan 11 2011 - 04:09:14 CST)
- a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64) Andrew Jewett (Mon Jan 10 2011 - 19:56:23 CST)
- pbctools & Desmond trajectory with protein units 'jumping' into other cells Irene Newhouse (Mon Jan 10 2011 - 13:22:26 CST)
- volumetric trajectory Fahimeh Baftizadeh (Mon Jan 10 2011 - 04:50:46 CST)
- vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 15:35:49 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:20:40 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:34:33 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:46:10 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:50:24 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:56:41 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:59:21 CST)
- Re: vmd with 3d vision John Stone (Fri Jan 07 2011 - 17:04:27 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:20:40 CST)
- Re: Binary request Axel Kohlmeyer (Fri Jan 07 2011 - 09:01:48 CST)
- Binary request Nima Nouri (Fri Jan 07 2011 - 04:19:13 CST)
- orientation of protein molecule prabhakar g (Wed Jan 05 2011 - 18:12:19 CST)
- VMD 1.8.7 and lammpsplugin.so error Stephanie Teich-McGoldrick (Wed Jan 05 2011 - 15:14:59 CST)
- Regarding fitframes.tcl pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 04:51:39 CST)
- How to show dynamic bonds? Jervis Chu (Tue Jan 04 2011 - 01:58:39 CST)
- (no subject) Sibel Cakan (Mon Jan 03 2011 - 04:15:23 CST)
- the IR spetra calculation module - from MD trajectory Jun Zhao (Sat Jan 01 2011 - 15:12:48 CST)
- Re: how to make the picture size suitable for the image size in pov file ? Cun Zhang (Fri Dec 31 2010 - 20:08:42 CST)
- Running Namd in Window zizi moradi (Fri Dec 31 2010 - 18:34:43 CST)
- error in the conversion of dcd to pdb files Ramya Narasimhan (Fri Dec 31 2010 - 04:11:06 CST)
- how to make the picture size suitable for the image size in pov file ? Cun Zhang (Thu Dec 30 2010 - 20:52:14 CST)
- Volmap Tool: Angular or spatial correlation function around a center molecule Xijun Wang (Wed Dec 29 2010 - 17:57:56 CST)
- MOE and NAMD Bharat Kumar (Wed Dec 29 2010 - 09:55:21 CST)
- psfgen or autopsf leila karami (Sun Dec 26 2010 - 08:11:34 CST)
- conversion of gromacs trajectory file (xtc) to amber trajectory file (mdcrd) leila karami (Sat Dec 25 2010 - 09:14:57 CST)
- Bad Length and GLXBadLargeRequest errors Corenflos, Steven (Wed Dec 22 2010 - 15:57:58 CST)
- Re: regarding counting water molecules Joshua Adelman (Wed Dec 22 2010 - 07:26:33 CST)
- consultation about metal_enviroment.tcl 庞春丽 (Wed Dec 22 2010 - 03:30:20 CST)
- "Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA David Brandon (Tue Dec 21 2010 - 14:38:16 CST)
- rmsd with 2 different structures using serial numbers Lisa Perez (Tue Dec 21 2010 - 13:30:33 CST)
- autopsf error: failed on end of segment Francesco Pietra (Tue Dec 21 2010 - 11:49:14 CST)
- Installing vmd-1.8.7 on LINUXAMD64 Michael Mwalaba (Tue Dec 21 2010 - 08:01:18 CST)
- RMSD and PSF generation Bharat Kumar (Mon Dec 20 2010 - 21:29:48 CST)
- selection of amino acids with certain distance each others leila karami (Sun Dec 19 2010 - 13:00:23 CST)
- Re: selection of amino acids with certain distance each others Axel Kohlmeyer (Sun Dec 19 2010 - 13:59:02 CST)
- Re: selection of amino acids with certain distance each others Ajasja Ljubeti膷 (Sun Dec 19 2010 - 14:07:03 CST)
- Re: selection of amino acids with certain distance each others Joshua Adelman (Sun Dec 19 2010 - 15:00:40 CST)
- xterm zaizhi lai (Fri Dec 17 2010 - 18:52:30 CST)
- delete water molecules siddesh southekal (Fri Dec 17 2010 - 07:18:17 CST)
- Save Atom Selection to DCD David Huggins (Wed Dec 15 2010 - 13:46:16 CST)
- why atom positions are reset after readpsf, coordpdb commands? 何毓辉 (Wed Dec 15 2010 - 03:37:53 CST)
- problem regarding the MC trajectory Ramya Narasimhan (Wed Dec 15 2010 - 00:41:46 CST)
- Paratool Tutorial Jacqueline Cawthray (Tue Dec 14 2010 - 14:01:59 CST)
- Rv: Re: Phonon spectrum and VACF jj mm (Tue Dec 14 2010 - 12:09:38 CST)
- Adsorption and diffusion candy deck (Tue Dec 14 2010 - 03:38:53 CST)
- how to measure some constants matziast_at_med.uth.gr (Tue Dec 14 2010 - 03:26:17 CST)
- load of information on B factor as independent file JhonY. I. (Tue Dec 14 2010 - 00:55:12 CST)
- HBONDS bug? Nicolas Tilmans (Mon Dec 13 2010 - 15:21:20 CST)
- automatic PSF builder leila karami (Mon Dec 13 2010 - 02:22:19 CST)
- Using LES with solvated, ionized protein Jacqueline Cawthray (Sun Dec 12 2010 - 18:38:18 CST)
- automatic PSF builder leila karami (Sun Dec 12 2010 - 08:25:03 CST)
- color change on atoms selected using mouse JhonY. I. (Thu Dec 09 2010 - 10:11:35 CST)
- Plotting potential energy Joyce Tan (Thu Dec 09 2010 - 03:36:19 CST)
- Phonon spectrum and VACF jj mm (Thu Dec 09 2010 - 03:11:03 CST)
- Rotation about one axis Sweta Iyer (Wed Dec 08 2010 - 19:43:55 CST)
- psfgen 1.4.7 and CMAP extended PSF Gianluca Interlandi (Wed Dec 08 2010 - 19:11:17 CST)
- Translating protein along one coordinate Sweta Iyer (Tue Dec 07 2010 - 23:18:41 CST)
- (no subject) Diehl, Alex (NIH/NCI) [V] (Tue Dec 07 2010 - 14:06:41 CST)
- (no subject) Olimpia Popko (Tue Dec 07 2010 - 05:08:50 CST)
- apocynin/1k4u vani panguluri (Mon Dec 06 2010 - 13:50:06 CST)
- Bug in AutoIMD Tristan Croll (Sun Dec 05 2010 - 21:44:48 CST)
- Bug in AutoIMD Tristan Croll (Sun Dec 05 2010 - 19:42:50 CST)
- Membrane Protein Tutorial Bharat Kumar (Sat Dec 04 2010 - 01:42:49 CST)
- Plot the value of the current frame in the Progress Bar for elapsed Time ABEL Stephane 175950 (Thu Dec 02 2010 - 09:51:44 CST)
- generating lipid membrane psf file Patrick Fleming (Thu Dec 02 2010 - 07:15:22 CST)
- use gelato render with VMD 1.8.7 for movie ABEL Stephane 175950 (Thu Dec 02 2010 - 06:22:36 CST)
- order of atoms in an improper dihedral matziast_at_med.uth.gr (Thu Dec 02 2010 - 04:10:41 CST)
- order of atoms in an improper dihedral matziast_at_med.uth.gr (Thu Dec 02 2010 - 03:31:35 CST)
- Output of forces Pletezhov Alexandr (Thu Dec 02 2010 - 03:18:26 CST)
- Re: namd-l: wrapping problem Ramya Gamini (Wed Dec 01 2010 - 11:37:26 CST)
- Plot a time line in the movie made with VMD ABEL Stephane 175950 (Wed Dec 01 2010 - 11:08:39 CST)
- namdenergy problem Francesco Oteri (Wed Dec 01 2010 - 06:23:23 CST)
- per-residue alignment Antonija Tomi (Wed Dec 01 2010 - 02:24:33 CST)
- reading of one frame from DCD file JhonY. I. (Tue Nov 30 2010 - 18:13:14 CST)
- reading of one frame from DCD file JhonY. I. (Tue Nov 30 2010 - 18:12:03 CST)
- print numerical values in a Ramachandran plot Rebeca Garc韆 Fandi駉 (Tue Nov 30 2010 - 17:01:12 CST)
- Re: print numerical values in a Ramachandran plot Ajasja Ljubeti膷 (Wed Dec 01 2010 - 01:54:32 CST)
- RE: print numerical values in a Ramachandran plot Rebeca Garc韆 Fandi駉 (Wed Dec 01 2010 - 09:56:45 CST)
- rotate a selection of a molecule and write rotated coordinates Rebeca Garc韆 Fandi駉 (Tue Feb 19 2013 - 08:45:30 CST)
- Re: rotate a selection of a molecule and write rotated coordinates Axel Kohlmeyer (Tue Feb 19 2013 - 10:07:23 CST)
- RE: rotate a selection of a molecule and write rotated coordinates Rebeca Garc韆 Fandi駉 (Wed Feb 20 2013 - 03:38:02 CST)
- Re: rotate a selection of a molecule and write rotated coordinates Axel Kohlmeyer (Wed Feb 20 2013 - 04:03:54 CST)
- RE: rotate a selection of a molecule and write rotated coordinates Rebeca Garc韆 Fandi駉 (Wed Feb 20 2013 - 04:07:55 CST)
- Re: print numerical values in a Ramachandran plot Ajasja Ljubeti膷 (Wed Dec 01 2010 - 01:54:32 CST)
- top2psf - bridging_waters.tcl script leila karami (Tue Nov 30 2010 - 00:41:58 CST)
- Can VMD build predicted protein structures by homology? Seweryn Bialasiewicz (Mon Nov 29 2010 - 21:43:11 CST)
- missing fragments in molefacture Irene Newhouse (Mon Nov 29 2010 - 16:08:46 CST)
- RMSD Question snoze pa (Sun Nov 28 2010 - 11:08:25 CST)
- top2psf - bridging_waters.tcl script leila karami (Sat Nov 27 2010 - 06:15:37 CST)
- delete bad atom in psfgen 绋嬫槍鍒 (Fri Nov 26 2010 - 05:21:01 CST)
- VASP crystal structure visualisation Germain Salvato Vallverdu (Thu Nov 25 2010 - 08:32:11 CST)
- VASP crystal structure visualisation Germain Salvato Vallverdu (Thu Nov 25 2010 - 06:41:35 CST)
- subtlety with PSFGEN - angle/dihedral regeneration Erik Nordgren (Wed Nov 24 2010 - 20:55:06 CST)
- average structure/solute and solvent Alex Liu (Wed Nov 24 2010 - 10:19:28 CST)
- how to display bond btw backbone atom and sidechain atom 程昌利 (Wed Nov 24 2010 - 04:58:37 CST)
- Seminars Trainings Christian Wohlschlager (Wed Nov 24 2010 - 02:37:48 CST)
- average structure/solute and solvent Alex Liu (Tue Nov 23 2010 - 09:21:31 CST)
- radial distribution function from the center of mass David Wedner (Thu Nov 18 2010 - 19:41:56 CST)
- .xsf triclinic cell contents Erin L. (Thu Nov 18 2010 - 14:23:06 CST)
- does vmd allow change in volume David Wedner (Thu Nov 18 2010 - 12:57:00 CST)
- tcl script problem using -dispdev text .. Alberto Sergio Garay (Thu Nov 18 2010 - 07:12:46 CST)
- Test Graphic card performance using VMD as benchmark TRINH Minh Hieu (Thu Nov 18 2010 - 06:18:04 CST)
- Max Characters in Writing Files Michael LeVine (Wed Nov 17 2010 - 15:36:49 CST)
- missing operator at _@_in expression "$i _@_$n" 绋嬫槍鍒 (Wed Nov 17 2010 - 09:59:16 CST)
- atom selection in vmd Alex Liu (Wed Nov 17 2010 - 08:49:55 CST)
- Problem With No Atoms In Selection David Huggins (Tue Nov 16 2010 - 14:35:20 CST)
- Re: How to Measure Radius of gyration David Wedner (Tue Nov 16 2010 - 13:24:05 CST)
- Rendering .dat files created from Movie Maker using Tachyon Truc Kim (Tue Nov 16 2010 - 06:34:12 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon Axel Kohlmeyer (Tue Nov 16 2010 - 10:43:38 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon Eduard Schreiner (Tue Nov 16 2010 - 11:25:07 CST)
- Headtracking software Tam醩 Borsos (Tue Nov 16 2010 - 04:25:04 CST)
- Re: Headtracking software Ajasja Ljubeti膷 (Tue Nov 16 2010 - 09:00:27 CST)
- Re: Headtracking software Biff Forbush (Tue Nov 16 2010 - 11:01:00 CST)
- Re: Headtracking software Biff Forbush (Tue Nov 16 2010 - 12:37:21 CST)
- Re: Headtracking software John Stone (Tue Nov 16 2010 - 15:23:14 CST)
- PMF vs distance plot from isosurface Aaron Oakley (Tue Dec 14 2010 - 22:17:48 CST)
- question on color assignment on trajectories JhonY. I. (Mon Nov 15 2010 - 20:29:49 CST)
- Background gradient in image quantrum75 (Mon Nov 15 2010 - 15:45:43 CST)
- Measure Radius of gyration David Wedner (Mon Nov 15 2010 - 12:31:15 CST)
- Re: Measure Radius of gyration Eduard Schreiner (Mon Nov 15 2010 - 13:47:16 CST)
- Water molecules within a definite radius quantrum75 (Mon Nov 15 2010 - 15:26:18 CST)
- How to change atom type and make it take effect immediately 锛 Cun Zhang (Sat Nov 13 2010 - 08:17:24 CST)
- Interactive MD driver/controller software no longer in beta Axel Kohlmeyer (Fri Nov 12 2010 - 09:41:59 CST)
- vmd-I:Hbonds nataliaperez_at_infomed.sld.cu (Thu Nov 11 2010 - 10:53:57 CST)
- vmd-I:Hbonds nataliaperez_at_infomed.sld.cu (Thu Nov 11 2010 - 08:59:11 CST)
- POV renderer and volume coloring problem Guido Polles (Thu Nov 11 2010 - 05:33:00 CST)
- Ions conversion from atomic model to coarse grained model 周文昌 (Wed Nov 10 2010 - 11:41:41 CST)
- k3b also launches vmd Francesco Pietra (Wed Nov 10 2010 - 03:05:03 CST)
- dynamic atom selection Stephen Cox (Tue Nov 09 2010 - 07:11:58 CST)
- 3D protein visualization quantrum75 (Mon Nov 08 2010 - 12:37:50 CST)
- Graphics card for VMD, number of atoms, file format Prskalo, Alen-Pilip (Mon Nov 08 2010 - 11:38:22 CST)
- Re: Graphics card for VMD, number of atoms, file format Axel Kohlmeyer (Mon Nov 08 2010 - 12:38:46 CST)
- Re: Graphics card for VMD, number of atoms, file format Andrew (Mon Nov 08 2010 - 14:29:07 CST)
- Script for counting water molecules aneesh cna (Mon Nov 08 2010 - 07:06:33 CST)
- Building a membrane from a individual surfactant molecule surendra jain (Mon Nov 08 2010 - 06:27:02 CST)
- fit.tcl divya nayar (Mon Nov 08 2010 - 03:01:14 CST)
- VMD: Ability to add terminal carbonyl oxygen Amor San Juan (Sun Nov 07 2010 - 23:32:20 CST)
- regarding merging of protein and a ligand vani panguluri (Sat Nov 06 2010 - 15:43:13 CDT)
- rgyr calculation problem Branko (Fri Nov 05 2010 - 16:21:05 CDT)
- DCD write/save with a python script David Huggins (Fri Nov 05 2010 - 14:58:18 CDT)
- dtr plugin: does it work for forces traj? Edward Lyman (Fri Nov 05 2010 - 11:03:55 CDT)
- Release of R.E.D. Server 2.0 FyD (Thu Nov 04 2010 - 04:50:36 CDT)
- Web Portal NAMD Job Visualisation...possibilities? Heidi Perrett (Wed Nov 03 2010 - 22:15:38 CDT)
- Regarding merging of two files vani panguluri (Wed Nov 03 2010 - 12:18:16 CDT)
- Running VMD from the terminal on MacBook Pro Steven S Plotkin (Wed Nov 03 2010 - 08:25:15 CDT)
- Asymmetric water molecule Stefan Franzen (Wed Nov 03 2010 - 02:11:22 CDT)
- Text command for isosurface Thomas Steinbrecher (Wed Nov 03 2010 - 01:51:37 CDT)
- rmsd divya nayar (Tue Nov 02 2010 - 11:53:26 CDT)
- vmd: Saving output Christian Jorgensen (Mon Nov 01 2010 - 04:30:03 CDT)
- VMD text mode/unwrap Parisa Akhski (Sun Oct 31 2010 - 19:53:47 CDT)
- Where to download Hbond plugin surendra jain (Sat Oct 30 2010 - 07:52:15 CDT)
- Contour plots for XYZ format Wang Xianqiao (Fri Oct 29 2010 - 23:47:51 CDT)
- vmd: Tcl script help Christian Jorgensen (Fri Oct 29 2010 - 14:06:59 CDT)
- namd-I : Constraint failure in RATTLE algorithm for atom 268 surendra jain (Thu Oct 28 2010 - 23:39:30 CDT)
- PBC wrap on hexagonal periodic cells OPC3_at_pitt.edu (Thu Oct 28 2010 - 12:12:51 CDT)
- Possible bug in freeing global selections Ajasja Ljubeti膷 (Thu Oct 28 2010 - 06:56:02 CDT)
- menus unresponsive in ubuntu 10.10 Andrew Jewett (Thu Oct 28 2010 - 02:42:15 CDT)
- Water mediated hydrogen bond - VMD script ban arn (Tue Oct 26 2010 - 13:31:42 CDT)
- Algorithm for RMSD and alignment Ignacio Fern醤dez Galv醤 (Tue Oct 26 2010 - 11:47:18 CDT)
- How to delete a residue Kshatresh Dutta Dubey (Tue Oct 26 2010 - 00:51:45 CDT)
- RDF calculation sarah k (Mon Oct 25 2010 - 10:21:40 CDT)
- Reading MatStudio/ LAMMPS structures to VMD Aric Newton (Sat Oct 23 2010 - 18:45:06 CDT)
- Adding cadmium into protein Joyce Tan (Wed Oct 20 2010 - 01:55:36 CDT)
- problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 10:36:43 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 11:39:47 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:58:00 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 12:03:43 CDT)
- Re: problem at convert single trajectory frame to pdb Axel Kohlmeyer (Tue Oct 19 2010 - 12:53:31 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 21:58:16 CDT)
- Re: problem at convert single trajectory frame to pdb Axel Kohlmeyer (Tue Oct 19 2010 - 22:04:44 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 22:41:27 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 12:35:58 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 12:38:24 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Re: problem at convert single trajectory frame to pdb Nicholas Musolino (Tue Oct 19 2010 - 12:10:51 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
- Vega ZZ DCD trajectory crashes VMD Ajasja Ljubeti膷 (Tue Oct 19 2010 - 09:21:44 CDT)
- Novint Falcon Christian Wohlschlager (Tue Oct 19 2010 - 07:22:21 CDT)
- PCA analysis of NAMD dcd files surendra jain (Tue Oct 19 2010 - 04:58:47 CDT)
- Best way for model post processing? Steve Jensen (Sun Oct 17 2010 - 23:22:14 CDT)
- Select non-redundant set using struture Qr not working Raul Araya (Sun Oct 17 2010 - 18:52:00 CDT)
- psf format masoumeh ozmaeian (Sun Oct 17 2010 - 02:26:04 CDT)
- Memory leak with "mol modselect" and index TRINH Minh Hieu (Sat Oct 16 2010 - 20:11:16 CDT)
- test masoumeh ozmaeian (Sat Oct 16 2010 - 14:26:58 CDT)
- setenv: Too many arguments Balazs Jojart (Fri Oct 15 2010 - 16:34:52 CDT)
- Bond Colors Brooke Dallas (Wed Oct 13 2010 - 08:46:36 CDT)
- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
- Re: Bond Colors Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
- Re: Bond Colors Eduard Schreiner (Wed Oct 13 2010 - 12:14:46 CDT)
- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 12:38:18 CDT)
- Re: Bond Colors Patrick Burney (Wed Oct 13 2010 - 14:41:43 CDT)
- Re: Bond Colors Brooke Dallas (Thu Oct 14 2010 - 11:37:10 CDT)
- Re: Bond Colors John Stone (Thu Oct 14 2010 - 11:54:04 CDT)
- Re: Bond Colors Axel Kohlmeyer (Thu Oct 14 2010 - 11:58:09 CDT)
- Re: Bond Colors Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
- IED 2.02 and VMD 1.8.7 Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 08:33:00 CDT)
- Re: IED 2.02 and VMD 1.8.7 Axel Kohlmeyer (Wed Oct 13 2010 - 09:23:19 CDT)
- Re: IED 2.02 and VMD 1.8.7 Hannes Loeffler (Wed Oct 13 2010 - 09:24:33 CDT)
- Selecting by X-coordinate Keith Battle (Tue Oct 12 2010 - 17:31:02 CDT)
- Real-time ambient occlusion lighting Ajasja Ljubeti膷 (Tue Oct 12 2010 - 15:54:00 CDT)
- Combined "Within" atom selection jonathan (Mon Oct 11 2010 - 11:59:08 CDT)
- How to stop a script (eg : source myscript.tcl) ? TRINH Minh Hieu (Mon Oct 11 2010 - 07:34:31 CDT)
- Re: psf gen charmm format Hannes Loeffler (Mon Oct 11 2010 - 07:25:58 CDT)
- Orientation an rotation of molecules in a movie Daniel Hornburg (Sat Oct 09 2010 - 07:26:21 CDT)
- Link Patch? Al-Ali, Hassan (Fri Oct 08 2010 - 23:39:15 CDT)
- Ubiquitin - patch? Al-Ali, Hassan (Thu Oct 07 2010 - 22:33:23 CDT)
- (no subject) Kei Sit (Thu Oct 07 2010 - 21:03:31 CDT)
- patch CT3 and ACE problems in PSFGEN Markus K. Dahlgren (Thu Oct 07 2010 - 15:11:52 CDT)
- missing frames in trajectory file Parisa Akhski (Wed Oct 06 2010 - 17:49:29 CDT)
- membrane_problem lara lara (Wed Oct 06 2010 - 00:29:39 CDT)
- aligning- on top of the bilayer lara lara (Wed Oct 06 2010 - 00:11:00 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:42 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:37 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:34 CDT)
- Query regarding RMSD calculcation hirdesh kumar (Tue Oct 05 2010 - 00:50:32 CDT)
- trouble with measure hbonds Charlotte Siska (Mon Oct 04 2010 - 15:01:36 CDT)
- Loading DCD Frames in Python David Huggins (Sat Oct 02 2010 - 05:16:05 CDT)
- load-traj for three dimensions Stefan Franzen (Fri Oct 01 2010 - 13:35:55 CDT)
- Interaction Energy Using Python David Huggins (Wed Sep 29 2010 - 11:04:25 CDT)
- IR Spectra plugin Agarwal, Silvi (Wed Sep 29 2010 - 10:59:59 CDT)
- Solvent accessible surface area change during MD run hirdesh kumar (Tue Sep 28 2010 - 04:54:14 CDT)
- Check out my photos on Facebook Aneesh Cna (Tue Sep 28 2010 - 04:27:52 CDT)
- Water-mediated hydrogen bonds ban arn (Tue Sep 28 2010 - 04:19:30 CDT)
- missing atoms yan zhang (Mon Sep 27 2010 - 08:42:07 CDT)
- protein breaks into parts after converting trajectory file to pdb file Joyce Tan (Mon Sep 27 2010 - 04:58:48 CDT)
- Experience with Asus Netbook Gianluca Interlandi (Sun Sep 26 2010 - 14:01:40 CDT)
- Re: Experience with Asus Netbook John Stone (Tue Sep 28 2010 - 10:45:08 CDT)
- Re: Experience with Asus Netbook TRINH Minh Hieu (Wed Sep 29 2010 - 12:59:46 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- Re: Re: Experience with Asus Netbook TRINH Minh Hieu (Wed Sep 29 2010 - 16:15:18 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 16:34:24 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 18:38:32 CDT)
- Re: Re: Experience with Asus Netbook Richard Cook (Wed Sep 29 2010 - 16:50:52 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 16:54:50 CDT)
- Re: Re: Experience with Asus Netbook TRINH Minh Hieu (Thu Sep 30 2010 - 01:53:08 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- implicit ligand sampling Marc Zimmer (Sat Sep 25 2010 - 06:26:24 CDT)
- Weird bonds in water box/sphere Sujata Sovani (Fri Sep 24 2010 - 18:51:27 CDT)
- IED/Tkinter problems Birgitte Maria Elisabeth Brydsoe (Fri Sep 24 2010 - 09:13:43 CDT)
- wheris sculptor.tcl Christian Wohlschlager (Fri Sep 24 2010 - 05:39:50 CDT)
- about psfgen patch Zhang, Jiong (MU-Student) (Thu Sep 23 2010 - 09:20:39 CDT)
- Clarification on solvent box sizing Ian Stokes-Rees (Wed Sep 22 2010 - 14:42:30 CDT)
- write pdbs of selected frames of a trajectory Katherine Parra (Wed Sep 22 2010 - 14:05:58 CDT)
- superimpose residues across several protein structures Joyce Tan (Wed Sep 22 2010 - 08:02:18 CDT)
- ppmtompeg Carla Jamous (Wed Sep 22 2010 - 07:52:42 CDT)
- psf gen charmm format Jorgen Simonsen (Wed Sep 22 2010 - 06:18:45 CDT)
- adding a metal ion Joyce Tan (Tue Sep 21 2010 - 20:39:43 CDT)
- Hydrogen bonds ban arn (Tue Sep 21 2010 - 11:17:10 CDT)
- movie rendering on MacOS 10.6 Neelanjana Sengupta (Mon Sep 20 2010 - 10:51:59 CDT)
- ppm files Carla Jamous (Mon Sep 20 2010 - 07:07:52 CDT)
- vmd can't display Pt-Cl bond 绋嬫槍鍒 (Mon Sep 20 2010 - 02:06:38 CDT)
- cg_ionize Sibel Cakan (Sun Sep 19 2010 - 16:37:15 CDT)
- cg ionization Sibel Cakan (Sun Sep 19 2010 - 15:28:14 CDT)
- cg ionization Sibel Cakan (Sun Sep 19 2010 - 15:16:06 CDT)
- minimization changed the occupancy of all atoms to zero Parisa Akhski (Fri Sep 17 2010 - 16:17:11 CDT)
- vmd_pdb file format Ramasamy, Ellankavi (Fri Sep 17 2010 - 11:43:18 CDT)
- vmd display water molecules error Cun Zhang (Fri Sep 17 2010 - 02:37:03 CDT)
- bigdcd + salt-bridge analysis Murpholino Peligro (Thu Sep 16 2010 - 15:31:58 CDT)
- maximum trajectory size? Murpholino Peligro (Thu Sep 16 2010 - 15:19:58 CDT)
- Compatibility with Orcad (PSpice) ? A. M. Carmen P閞ez (Thu Sep 16 2010 - 05:06:29 CDT)
- Mouse event listener Gianluca Interlandi (Wed Sep 15 2010 - 16:11:41 CDT)
- Mouse event listener Gianluca Interlandi (Wed Sep 15 2010 - 15:20:37 CDT)
- VMD for windows 64-bit Michel Espinoza-Fonseca (Wed Sep 15 2010 - 14:02:02 CDT)
- compile vmd Knut J鴕gen Bjuland (Wed Sep 15 2010 - 11:54:17 CDT)
- Draw a box cell for a crystal Germain Vallverdu (Wed Sep 15 2010 - 06:43:35 CDT)
- H-bond life time Nicolas SAPAY (Wed Sep 15 2010 - 03:22:09 CDT)
- Autoionize question for DNA molecule Parisa Akhski (Tue Sep 14 2010 - 17:45:52 CDT)
- vasp POSCAR plugin Tawhid Ezaz (Tue Sep 14 2010 - 17:36:00 CDT)
- Re:vmd_start_problem_in_mac OSX Raman Parkesh (Tue Sep 14 2010 - 12:27:26 CDT)
- turning on the tcl/tk console in .vmdrc Rosanne Zeiler (Tue Sep 14 2010 - 06:18:13 CDT)
- Error encountered when quitting VMD on the Mac Ben Roberts (Mon Sep 13 2010 - 16:55:53 CDT)
- GLXBadLargeRequest and BadLength messages Moulton, Steve (Mon Sep 13 2010 - 15:43:32 CDT)
- phosphorylation modelling Zhang, Jiong (MU-Student) (Mon Sep 13 2010 - 15:11:49 CDT)
- compile windows binary in linux CLEMENTS, ROBERT (Mon Sep 13 2010 - 14:17:51 CDT)
- writepdb append Jacopo Sgrignani (Mon Sep 13 2010 - 05:49:20 CDT)
- Anaglyph rendering problem Ajasja Ljubeti膷 (Mon Sep 13 2010 - 03:50:27 CDT)
- Use of parmtool plugin Christian Wohlschlager (Mon Sep 13 2010 - 01:38:01 CDT)
- Visualization problem with aromatic bromo atom? Meyer-Almes, Franz-Josef, Prof. Dr. (Sun Sep 12 2010 - 13:18:46 CDT)
- vmd.ps 程昌利 (Sun Sep 12 2010 - 11:14:49 CDT)
- (no subject) 程昌利 (Sun Sep 12 2010 - 11:12:01 CDT)
- change residue colors? Fatemesadat Emami (Fri Sep 10 2010 - 14:37:23 CDT)
- Distance lines Patargias, George (Thu Sep 09 2010 - 15:24:38 CDT)
- maximum trajectory size? Patrick Burney (Wed Sep 08 2010 - 19:04:38 CDT)
- Loss of VDW upon rendering with POV3 Stefan Oliver (Wed Sep 08 2010 - 14:10:34 CDT)
- two coloring method Tawhid Ezaz (Fri Sep 03 2010 - 17:18:38 CDT)
- problem about dowser Chen, Zhihong (chenz2) (Fri Sep 03 2010 - 16:38:05 CDT)
- Matrix based intermediate rotations Bogdan Costescu (Fri Sep 03 2010 - 05:50:40 CDT)
- Symposium on Accelerating Biology jani vinod (Fri Sep 03 2010 - 00:11:03 CDT)
- Problem with orient.tcl Salvador H-V (Thu Sep 02 2010 - 12:59:38 CDT)
- Best way to bond peptides Sujata Sovani (Wed Sep 01 2010 - 18:30:08 CDT)
- Best way to join two PDB fragments by a peptide bond Sujata Sovani (Wed Sep 01 2010 - 17:36:46 CDT)
- How to set the default mol style as VDW? Eric Grzelak (Wed Sep 01 2010 - 15:07:49 CDT)
- question about Ca-dist.tcl dhacademic (Wed Sep 01 2010 - 10:14:24 CDT)
- paratool error Goutham (Tue Aug 31 2010 - 20:02:30 CDT)
- vmd paratool - getting GAUSSIAN charges Goutham (Tue Aug 31 2010 - 10:51:48 CDT)
- Using Bigdcd with RMSD Trajectory tool in VMD Dan J Martingano (Mon Aug 30 2010 - 14:33:29 CDT)
- creating psf file unni kuttan (Mon Aug 30 2010 - 12:14:15 CDT)
- Faster secondary structure assignment J閞鬽e H閚in (Mon Aug 30 2010 - 11:28:45 CDT)
- paratool doan dung (Sun Aug 29 2010 - 10:04:29 CDT)
- plugin for Abinit output files Rob (Sat Aug 28 2010 - 03:22:05 CDT)
- RMSD trajectory tool Parisa Akhski (Fri Aug 27 2010 - 13:06:40 CDT)
- Hydrogen bond angle hirdesh kumar (Fri Aug 27 2010 - 08:19:29 CDT)
- BB Trace Rex Palmer (Thu Aug 26 2010 - 14:49:39 CDT)
- showing the backbone trace of a cyclic peptide Rex Palmer (Thu Aug 26 2010 - 14:45:33 CDT)
- DCD Based on a parameter Pat Yee (Thu Aug 26 2010 - 09:01:51 CDT)
- vmd - rendering Ramasamy, Ellankavi (Wed Aug 25 2010 - 09:32:14 CDT)
- Re: runsqm plugin required but not installed John Stone (Tue Aug 24 2010 - 17:12:24 CDT)
- hydrophobic accessible surface area Jorgen Simonsen (Tue Aug 24 2010 - 13:55:20 CDT)
- [carlos.simmerling@gmail.com: Re: ACS award information, Oct 15 deadline] John Stone (Tue Aug 24 2010 - 09:48:02 CDT)
- Structure won't move after loading trajectory NG HUI WEN (Mon Aug 23 2010 - 19:40:36 CDT)
- converting old LAMMPS ASCII dumps Dan Lussier (Mon Aug 23 2010 - 19:08:01 CDT)
- OSX 10.6 support? Steve Smith (Mon Aug 23 2010 - 15:32:05 CDT)
- Problem with 'unwrap' Sandra Rennebaum (Mon Aug 23 2010 - 03:44:34 CDT)
- (no subject) Janani.S (Fri Aug 20 2010 - 22:39:10 CDT)
- POPC from charmm27 to charmm36 Raul Araya (Fri Aug 20 2010 - 18:43:00 CDT)
- RMSF calculation: residue wise hirdesh kumar (Fri Aug 20 2010 - 11:22:55 CDT)
- (no subject) yan zhang (Fri Aug 20 2010 - 03:54:47 CDT)
- catdcd usage with Desmond trajectory Irene Newhouse (Thu Aug 19 2010 - 16:19:10 CDT)
- VMD plus Phantom Christian Wohlschlager (Wed Aug 18 2010 - 11:04:42 CDT)
- plugin : membrane builder : "integer value too large to represent" Lepore, Bryan (Wed Aug 18 2010 - 10:21:07 CDT)
- Is it possible to load a part of a big xtc file faster... Alberto Sergio Garay (Wed Aug 18 2010 - 09:44:56 CDT)
- PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha Knut J鴕gen Bjuland (Wed Aug 18 2010 - 09:11:21 CDT)
- Re: tcl script Cun Zhang (Wed Aug 18 2010 - 03:25:21 CDT)
- tcl script deepti nayar (Wed Aug 18 2010 - 01:14:06 CDT)
- REMD + RBCG Gregorio Alanislobato (Tue Aug 17 2010 - 16:12:22 CDT)
- RSMD of coarse grained molecules Gregorio Alanislobato (Mon Aug 16 2010 - 12:13:59 CDT)
- workaround for DynamicBonds Georg Spiekermann (Mon Aug 16 2010 - 10:12:10 CDT)
- VMD 3D movies rendering Daniel Hornburg (Mon Aug 16 2010 - 05:07:59 CDT)
- Re: VMD 3D movies rendering Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
- Re: VMD 3D movies rendering John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Tue Aug 17 2010 - 05:43:35 CDT)
- Re: VMD 3D movies rendering John Stone (Tue Aug 17 2010 - 09:39:58 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Tue Aug 17 2010 - 10:50:30 CDT)
- RE: VMD 3D movies rendering Shore, Jay (Tue Aug 17 2010 - 13:34:31 CDT)
- Re: VMD 3D movies rendering John Stone (Tue Aug 17 2010 - 13:47:35 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Wed Aug 18 2010 - 02:17:49 CDT)
- Re: VMD 3D movies rendering John Stone (Wed Aug 18 2010 - 13:53:52 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Thu Aug 19 2010 - 03:23:43 CDT)
- Re: VMD 3D movies rendering John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
- Re: VMD 3D movies rendering Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
- where can I download Tachyon version 0.98.10 ? Cun Zhang (Fri Aug 13 2010 - 23:06:19 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Mon Aug 16 2010 - 04:02:55 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Mon Aug 16 2010 - 11:08:36 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Ian Stokes-Rees (Mon Aug 16 2010 - 12:03:30 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Mon Aug 16 2010 - 12:54:37 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Wed Aug 18 2010 - 00:36:33 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Sat Aug 14 2010 - 23:10:51 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
- "Hands-On" Workshop on Computational Biophysics, November 1-5, 2010 & November 29-December 3, 2010 in Urbana, IL TCBG Workshops (Thu Aug 12 2010 - 17:10:53 CDT)
- Interpreting a contact map Ian Stokes-Rees (Thu Aug 12 2010 - 16:17:12 CDT)
- VMD questions about animating residue distance lines and contact maps Ian Stokes-Rees (Thu Aug 12 2010 - 15:56:18 CDT)
- Solvent Accessible Surface R. Johnson (Thu Aug 12 2010 - 13:26:48 CDT)
- cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 13:21:56 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:37:14 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:48:31 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Thu Aug 12 2010 - 15:00:17 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 15:25:26 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Fri Aug 13 2010 - 12:55:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Fri Aug 13 2010 - 14:30:28 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Fri Aug 13 2010 - 15:18:58 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Fri Aug 13 2010 - 00:03:51 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- About Atom Index Order Cun Zhang (Wed Aug 11 2010 - 20:59:08 CDT)
- Problem Material Studio/VMD candy deck (Wed Aug 11 2010 - 01:49:55 CDT)
- Solvate plug-in Charles Zhao (Tue Aug 10 2010 - 21:53:22 CDT)
- Writing Python Plugins properly jonathan (Mon Aug 09 2010 - 11:48:25 CDT)
- input file Agnieszka Sobkiewicz (Mon Aug 09 2010 - 06:41:18 CDT)
- ion bead (residue based CG) Demet Akten (Mon Aug 09 2010 - 05:34:26 CDT)
- Superimpose protein - plot water position - visualize water pathway Marc Zimmer (Sat Aug 07 2010 - 19:51:26 CDT)
- upgrading vmd's nvidia component Bob Wohlhueter (Thu Aug 05 2010 - 16:04:53 CDT)
- Inserting amino acids to a protein Gregorio Alanislobato (Thu Aug 05 2010 - 14:24:56 CDT)
- NAMD energy plugin politr_at_huji.ac.il (Thu Aug 05 2010 - 07:41:37 CDT)
- Conversion into POVRay coordinates Nicolas Sapay (Wed Aug 04 2010 - 04:01:20 CDT)
- water molecules shooting during SMD + PDB WRITE ERROR koushik.k (Tue Aug 03 2010 - 06:45:25 CDT)
- povray rendering help Ramasamy, Ellankavi (Fri Jul 30 2010 - 07:45:31 CDT)
- 2D RMSD matrix plot ban arn (Fri Jul 30 2010 - 05:52:02 CDT)
- Focal blur with Tachyon Nicolas Sapay (Fri Jul 30 2010 - 03:13:49 CDT)
- surface rendering across X11 windows David Hoover (Thu Jul 29 2010 - 16:15:48 CDT)
- script to calculate molecular surface area latha (Wed Jul 28 2010 - 12:46:23 CDT)
- Dihedrals Angle ban arn (Wed Jul 28 2010 - 11:43:47 CDT)
- 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 05:50:21 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 07:50:53 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 07:55:33 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 07:59:08 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 08:01:54 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
- "can not find channel named ... Asmaa Elsheshiny (Wed Jul 28 2010 - 04:14:31 CDT)
- multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Tue Jul 27 2010 - 14:37:02 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Tue Jul 27 2010 - 16:54:53 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer John Stone (Wed Jul 28 2010 - 16:23:51 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Kirby Vandivort (Wed Jul 28 2010 - 16:36:10 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer John Stone (Thu Jul 29 2010 - 10:21:11 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Kirby Vandivort (Thu Jul 29 2010 - 10:33:26 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Fri Jul 30 2010 - 13:14:47 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Kirby Vandivort (Fri Jul 30 2010 - 14:30:05 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer John Stone (Wed Jul 28 2010 - 16:23:51 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Tue Jul 27 2010 - 16:54:53 CDT)
- 2D rmsd plot for C-alpha atoms ban arn (Tue Jul 27 2010 - 10:55:48 CDT)
- install on Centos - issues Joseph Norris (Fri Jul 23 2010 - 18:48:04 CDT)
- VMD XRequest errors Richard Cook (Fri Jul 23 2010 - 18:47:49 CDT)
- Re: VMD XRequest errors John Stone (Tue Jul 27 2010 - 23:58:01 CDT)
- Re: VMD XRequest errors Richard Cook (Wed Jul 28 2010 - 16:39:08 CDT)
- Re: VMD XRequest errors Richard Cook (Wed Jul 28 2010 - 20:15:01 CDT)
- Re: VMD XRequest errors John Stone (Wed Jul 28 2010 - 21:02:30 CDT)
- Re: VMD XRequest errors Richard Cook (Wed Jul 28 2010 - 21:25:21 CDT)
- Re: VMD XRequest errors John Stone (Wed Jul 28 2010 - 21:54:21 CDT)
- Re: VMD XRequest errors Richard Cook (Thu Aug 26 2010 - 17:17:22 CDT)
- Re: VMD XRequest errors John Stone (Fri Aug 27 2010 - 14:23:38 CDT)
- Re: VMD XRequest errors John Stone (Tue Jul 27 2010 - 23:58:01 CDT)
- MDFF Query: how to convert XPLOR style density maps to DX or SITUS format harish vashisth (Fri Jul 23 2010 - 16:28:59 CDT)
- Extra lines shown in trajectories in VMD Elias Ahadi (Wed Jul 21 2010 - 12:26:08 CDT)
- PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file Prskalo, Alen-Pilip (Wed Jul 21 2010 - 02:40:27 CDT)
- Re: PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file Ian Stokes-Rees (Wed Jul 21 2010 - 07:07:51 CDT)
- compilation of vmd 1.8.7 source Vlad Cojocaru (Tue Jul 20 2010 - 09:22:15 CDT)
- Re: compilation of vmd 1.8.7 source John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
- trajectory sort by RMSD or other Thomas C. Bishop (Tue Jul 20 2010 - 12:17:14 CDT)
- Re: trajectory sort by RMSD or other John Stone (Tue Jul 20 2010 - 12:44:38 CDT)
- Re: trajectory sort by RMSD or other Axel Kohlmeyer (Tue Jul 20 2010 - 13:04:57 CDT)
- Re: trajectory sort by RMSD or other Thomas C. Bishop (Tue Jul 20 2010 - 16:51:17 CDT)
- Re: trajectory sort by RMSD or other Axel Kohlmeyer (Tue Jul 20 2010 - 17:17:33 CDT)
- trajectory sort by RMSD or other Thomas C. Bishop (Tue Jul 20 2010 - 12:17:14 CDT)
- Re: compilation of vmd 1.8.7 source Ian Stokes-Rees (Tue Jul 20 2010 - 10:07:45 CDT)
- Re: compilation of vmd 1.8.7 source John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
- lowest energy structure Jorgen Simonsen (Mon Jul 19 2010 - 22:52:59 CDT)
- VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash Ian Stokes-Rees (Mon Jul 19 2010 - 12:10:16 CDT)
- VMD Crashes on Windows Vista when trying to load more than 5000 steps Josiah Zayner (Mon Jul 19 2010 - 09:37:51 CDT)
- Invitation to connect on LinkedIn Deepti Mishra (Mon Jul 19 2010 - 05:57:43 CDT)
- Adding other online PDB data bases to VMD Ian Stokes-Rees (Fri Jul 16 2010 - 18:46:31 CDT)
- Cannot find "cionize plugin" in VMD Parisa Akhski (Fri Jul 16 2010 - 14:26:59 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
- RE: Cannot find "cionize plugin" in VMD Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 12:42:15 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 14:09:37 CDT)
- RE: Cannot find "cionize plugin" in VMD Parisa Akhski (Wed Jul 21 2010 - 13:31:39 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Wed Jul 21 2010 - 16:22:05 CDT)
- RE: Cannot find "cionize plugin" in VMD Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
- making a movie of an unusual trajectory Edward Lyman (Fri Jul 16 2010 - 11:54:47 CDT)
- Building VMD on OS X 10.6 with Python and CUDA support Ian Stokes-Rees (Thu Jul 15 2010 - 22:44:34 CDT)
- Adding Single Residues to a Protein Anwaar Al-Zireeni (Thu Jul 15 2010 - 18:34:56 CDT)
- locating or creating a .vmdsensors file for windows VMD Jeffrey Sanders (Wed Jul 14 2010 - 12:42:02 CDT)
- using tcl variables in representation gui Robert Wohlhueter (Wed Jul 14 2010 - 09:22:09 CDT)
- Graphics Representation - Drawing methods puroorava annapaneni (Tue Jul 13 2010 - 17:39:06 CDT)
- Question about vrpn server build for using Phantom with VMD Jeffrey Sanders (Tue Jul 13 2010 - 15:05:58 CDT)
- Native contacts trajectory tool available Toni Giorgino (Tue Jul 13 2010 - 14:09:49 CDT)
- VMD cuda Raul Araya (Mon Jul 12 2010 - 15:59:19 CDT)
- Autoionize question for DNA molecule Parisa Akhski (Mon Jul 12 2010 - 10:10:11 CDT)
- contact map for Protein-DNA interaction atila petrosian (Mon Jul 12 2010 - 02:19:13 CDT)
- ILS tool fails Aaron Oakley (Fri Jul 09 2010 - 20:25:38 CDT)
- DPPC jouko_at_uchicago.edu (Thu Jul 08 2010 - 22:21:25 CDT)
- Modifying amino acid to a non-standard amino acid using VMD (proline to hydroxyproline) Sujata Sovani (Thu Jul 08 2010 - 19:05:55 CDT)
- Install VMD on intel i5 moacyr comar (Wed Jul 07 2010 - 12:00:18 CDT)
- contact map for protein-dna interaction leila karami (Wed Jul 07 2010 - 03:32:51 CDT)
- Release of the R.E.D.-III.4 tools FyD (Wed Jul 07 2010 - 02:04:36 CDT)
- Selecting basic residues in g(r) GUI Plugin Rabab Toubar (Tue Jul 06 2010 - 10:47:06 CDT)
- Autoionize does not neutralize the system Parisa Akhski (Tue Jul 06 2010 - 09:16:20 CDT)
- color charmm dcd by kinetic energy Ardy Davari (Mon Jul 05 2010 - 15:59:22 CDT)
- contact map leila karami (Mon Jul 05 2010 - 09:46:04 CDT)
- contact map leila karami (Mon Jul 05 2010 - 09:12:47 CDT)
- contact map leila karami (Mon Jul 05 2010 - 08:33:23 CDT)
- Conversion of DCD trajectories to AMBER ones ? Marek Maly (Mon Jul 05 2010 - 05:06:40 CDT)
- RGB values... Luis Guillermo Cota Preciado (Thu Jul 01 2010 - 18:10:10 CDT)
- Sasa implentation/ algorithm VMD henri mone (Thu Jul 01 2010 - 17:19:06 CDT)
- Re: Tachyon Rendering with a Surf Representation jamesgiacmo_at_aol.com (Wed Jun 30 2010 - 08:29:39 CDT)
- getting python to work Seth Burleigh (Tue Jun 29 2010 - 11:20:09 CDT)
- Tachyon Rendering with a Surf Representation jamesgiacmo_at_aol.com (Tue Jun 29 2010 - 10:12:11 CDT)
- VMD / Tachyon Questions Andrew (Sun Jun 27 2010 - 19:27:21 CDT)
- Re: namd-l: Simulation configuration file not accesible Ajasja Ljubeti膷 (Fri Jun 25 2010 - 16:19:34 CDT)
- stereo problem with vmd Osmany Guirola Cruz (Fri Jun 25 2010 - 06:58:06 CDT)
- VMD 1.8.7 and NVIDIA 256.35 driver problems (CUDA issue?) ben rodriguez (Thu Jun 24 2010 - 14:29:18 CDT)
- Add/Remove Bonds Rabab Toubar (Thu Jun 24 2010 - 12:27:20 CDT)
- vmd on Microsoft 2000 and Phantom Christian Wohlschlager (Tue Jun 22 2010 - 07:51:03 CDT)
- Fwd: convert prmtop to psf Lai zaizhi (Mon Jun 21 2010 - 16:42:10 CDT)
- Re: convert prmtop to psf Lai zaizhi (Mon Jun 21 2010 - 16:41:37 CDT)
- Re: Re: convert prmtop to psf John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
- Re: Re: convert prmtop to psf Lai zaizhi (Mon Jun 21 2010 - 17:33:07 CDT)
- Re: Re: convert prmtop to psf John Stone (Tue Jun 22 2010 - 11:27:49 CDT)
- Re: Re: convert prmtop to psf Lai zaizhi (Tue Jun 22 2010 - 11:54:56 CDT)
- Re: Re: convert prmtop to psf Lai zaizhi (Tue Jun 22 2010 - 12:22:16 CDT)
- Re: Re: convert prmtop to psf John Stone (Tue Jun 22 2010 - 13:58:14 CDT)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Tue Jun 22 2010 - 14:01:36 CDT)
- Re: Re: convert prmtop to psf Wei Huang (Tue Feb 01 2011 - 16:22:28 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Tue Feb 01 2011 - 17:41:31 CST)
- Re: Re: convert prmtop to psf Wei Huang (Tue Feb 01 2011 - 22:04:07 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Wed Feb 02 2011 - 09:26:32 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Wed Feb 02 2011 - 15:45:16 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Mon Jun 21 2010 - 17:25:22 CDT)
- Re: Re: convert prmtop to psf John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
- AutoPSF errors Emily Chen (Mon Jun 21 2010 - 14:06:19 CDT)
- Re: AutoPSF errors Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
- OpenGL Display slow/freeze Yangyang Shen (Mon Jun 21 2010 - 22:08:11 CDT)
- Re: OpenGL Display slow/freeze Axel Kohlmeyer (Mon Jun 21 2010 - 22:52:13 CDT)
- Re: OpenGL Display slow/freeze Yangyang Shen (Tue Jun 22 2010 - 08:34:40 CDT)
- Re: OpenGL Display slow/freeze John Stone (Tue Jun 22 2010 - 09:00:38 CDT)
- Re: OpenGL Display slow/freeze Axel Kohlmeyer (Tue Jun 22 2010 - 08:45:15 CDT)
- Re: OpenGL Display slow/freeze John Stone (Mon Jun 21 2010 - 22:43:38 CDT)
- Re: OpenGL Display slow/freeze Yangyang Shen (Tue Jun 22 2010 - 08:09:59 CDT)
- Re: OpenGL Display slow/freeze John Stone (Tue Jun 22 2010 - 08:54:46 CDT)
- Re: OpenGL Display slow/freeze Emily Chen (Tue Jun 22 2010 - 13:51:37 CDT)
- Re: OpenGL Display slow/freeze Emily Chen (Tue Jun 22 2010 - 13:53:30 CDT)
- Re: AutoPSF errors Peter Freddolino (Tue Jun 22 2010 - 20:16:06 CDT)
- OpenGL Display slow/freeze Yangyang Shen (Mon Jun 21 2010 - 22:08:11 CDT)
- Re: AutoPSF errors Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
- Cannot read MSMS data files Jayne Wallace (Mon Jun 21 2010 - 09:12:07 CDT)
- namdenergy: writepdb failed Neelanjana Sengupta (Sun Jun 20 2010 - 06:27:02 CDT)
- structure file for big molecules Moeed (Fri Jun 18 2010 - 21:19:02 CDT)
- Hydrophobic interaction ban arn (Fri Jun 18 2010 - 06:53:37 CDT)
- Hydrophobic interaction ban arn (Fri Jun 18 2010 - 05:59:43 CDT)
- -samples flag of measure sasa Edward Lyman (Thu Jun 17 2010 - 11:47:34 CDT)
- Workshop on GPU Programming for Molecular Modeling, August 6-8, 2010, at the Beckman Institute in Urbana, Illinois TCBG Workshops (Fri Jun 11 2010 - 17:28:26 CDT)
- vmd crash at start Bogdan Tarus (Thu Jun 17 2010 - 10:33:35 CDT)
- Invalid command name "His" during Solvation Michael LeVine (Thu Jun 17 2010 - 09:10:52 CDT)
- Color by velocity (speed?) Ardy Davari (Wed Jun 16 2010 - 12:04:04 CDT)
- solvate nonstandard patch error Harold Hatch (Wed Jun 16 2010 - 10:42:50 CDT)
- visualize trajectories from lammps parallel results shiziyuan (Tue Jun 15 2010 - 15:44:58 CDT)
- particular set of xyz coordinates in PDB causes seg fault Daniel Farrell (Tue Jun 15 2010 - 12:16:58 CDT)
- AutoPSF deleting residues Kelly Leung (Tue Jun 15 2010 - 10:35:38 CDT)
- Re: Grid spacing in mdff Leonardo Trabuco (Tue Jun 15 2010 - 02:54:08 CDT)
- Gradient Background Vikas Varshney (Mon Jun 14 2010 - 15:13:26 CDT)
- Change only the CA coordinates in a pdb file via tcl Mert G黵 (Mon Jun 14 2010 - 14:26:14 CDT)
- top2psf.tcl Rabab Toubar (Sun Jun 13 2010 - 05:59:28 CDT)
- Re: top2psf.tcl Axel Kohlmeyer (Sun Jun 13 2010 - 07:19:12 CDT)
- Re: top2psf.tcl Rabab Toubar (Tue Jun 15 2010 - 08:21:19 CDT)
- Re: top2psf.tcl Rabab Toubar (Tue Jun 15 2010 - 10:14:14 CDT)
- Re: top2psf.tcl Axel Kohlmeyer (Tue Jun 15 2010 - 10:31:42 CDT)
- topotools Rabab Toubar (Tue Jun 15 2010 - 11:22:55 CDT)
- Re: topotools Axel Kohlmeyer (Tue Jun 15 2010 - 11:31:40 CDT)
- Re: topotools Rabab Toubar (Tue Jun 15 2010 - 11:57:12 CDT)
- Re: topotools Axel Kohlmeyer (Tue Jun 15 2010 - 12:00:00 CDT)
- saving a GMX trajectory using tcl script Rabab Toubar (Wed Jun 16 2010 - 07:21:00 CDT)
- Re: saving a GMX trajectory using tcl script John Stone (Thu Jun 17 2010 - 14:43:00 CDT)
- Re: top2psf.tcl Axel Kohlmeyer (Sun Jun 13 2010 - 07:19:12 CDT)
- Rending to png format using tachyon or otherwise ? maria goranovic (Wed Jun 09 2010 - 09:33:25 CDT)
- topotools and Partial charges Michael Doig (Wed Jun 09 2010 - 05:25:25 CDT)
- about vmd solvation plugin David Li (Sat Jun 05 2010 - 18:31:36 CDT)
- visualizing small molecule in a trajectory file .trr and .gro using VMD Hassan Shallal (Fri Jun 04 2010 - 22:49:33 CDT)
- Trouble compiling from source - Mac OS X Reid Van Lehn (Fri Jun 04 2010 - 11:36:54 CDT)
- Retrieving the Cremer-Pople parameters Nicolas Sapay (Fri Jun 04 2010 - 03:46:30 CDT)
- Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 02:32:23 CDT)
- Re: Problems with Linux install... John Stone (Fri Jun 04 2010 - 08:37:54 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 10:19:01 CDT)
- Re: Problems with Linux install... John Stone (Fri Jun 04 2010 - 16:19:09 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Mon Jun 07 2010 - 00:17:58 CDT)
- Re: Problems with Linux install... John Stone (Wed Jun 09 2010 - 16:17:18 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Wed Jun 09 2010 - 18:35:18 CDT)
- Re: Problems with Linux install... Axel Kohlmeyer (Wed Jun 09 2010 - 21:26:53 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 10:19:01 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 13:30:30 CDT)
- Re: Problems with Linux install... John Stone (Fri Jun 04 2010 - 08:37:54 CDT)
- about ".cpmd" format Liu (Thu Jun 03 2010 - 22:31:58 CDT)
- about paratool Francesco Pietra (Thu Jun 03 2010 - 02:50:05 CDT)
- Has anyone done ILS successfully? Irene Newhouse (Wed Jun 02 2010 - 14:39:36 CDT)
- CAN ANY ONE HELP ME vani panguluri (Wed Jun 02 2010 - 10:09:08 CDT)
- Interaction Energy ban arn (Wed Jun 02 2010 - 07:29:38 CDT)
- Visualize intersection of overlapping spheres? Bjoern Olausson (Wed Jun 02 2010 - 06:51:56 CDT)
- psfgen plugin sriteja mantha (Wed Jun 02 2010 - 05:23:51 CDT)
- Bug in VMD-1.8.7 multiseq functionality genie lfs (Wed Jun 02 2010 - 04:54:48 CDT)
- RMSD Trajectory Tool Philip Peartree (Tue Jun 01 2010 - 20:33:54 CDT)
- Compiling without graphics Philip Peartree (Tue Jun 01 2010 - 20:31:18 CDT)
- Deleting/modifying specific molecule representations Bob Johnson (Tue Jun 01 2010 - 11:23:58 CDT)
- Mol2 with Charmm atom types? Edelmiro Moman (Mon May 31 2010 - 04:45:51 CDT)
- Residue Number Assignment by VMD Sally Fisher (Fri May 28 2010 - 07:29:55 CDT)
- RDF and Coordination Number Amir Hajiahmadi Farmahini (Fri May 28 2010 - 05:40:15 CDT)
- APBS plugin Sladjana Maric (Thu May 27 2010 - 18:16:15 CDT)
- pbc wrap Salvador H-V (Thu May 27 2010 - 17:35:54 CDT)
- Modelling program that does hydrogen adjust Jennifer Williams (Thu May 27 2010 - 10:21:49 CDT)
- Tcl-wrapped "lightweight plugin" in C++ J閞鬽e H閚in (Thu May 27 2010 - 07:27:00 CDT)
- Residue Ordering in Sequence Viewer/MultiSeq Sally Fisher (Wed May 26 2010 - 10:15:20 CDT)
- radial distribution function problem Hyun Tae Jung (Wed May 26 2010 - 08:42:48 CDT)
- Problem with display on Intel graphics card Tim Travers (Tue May 25 2010 - 17:29:09 CDT)
- parameter file for CHARMM matziast_at_med.uth.gr (Tue May 25 2010 - 16:03:33 CDT)
- monomer transposes boundary box Hugo Guti閞rez de Teran (Tue May 25 2010 - 06:48:04 CDT)
- Tachyon 0.9.10 and recommende version of cuda? Knut J鴕gen Bjuland (Mon May 24 2010 - 05:10:37 CDT)
- LAMMPS Trajectory Moslem Sabouri (Sun May 23 2010 - 04:46:17 CDT)
- generating PSF file for a small molecule Hassan Shallal (Sun May 23 2010 - 03:53:58 CDT)
- Atom Selection for RDF Amir Hajiahmadi Farmahini (Sat May 22 2010 - 09:19:18 CDT)
- Re: namd-l: Error in running minimization Joshua Adelman (Fri May 21 2010 - 07:56:06 CDT)
- Cutting a bond Francesco Pietra (Wed May 19 2010 - 13:52:18 CDT)
- Frames-Movie Salvador H-V (Wed May 19 2010 - 11:54:32 CDT)
- Adding an atom to the existing pdb Narasimhan LOGANATHAN (Wed May 19 2010 - 05:18:22 CDT)
- LANG setting needs to be solved in next release.... Rob (Tue May 18 2010 - 19:33:06 CDT)
- compile error Liu Shiyong (Tue May 18 2010 - 04:40:12 CDT)
- adding water box Hao Sun (Mon May 17 2010 - 19:09:57 CDT)
- adding water box Hao Sun (Mon May 17 2010 - 19:09:36 CDT)
- Radial distribution function: "y" axis martin klvana (Sun May 16 2010 - 12:39:54 CDT)
- append pdb politr_at_huji.ac.il (Sun May 16 2010 - 09:48:19 CDT)
- Xrequest in VMD Mantzalis, Dimitrios (Wed May 12 2010 - 06:03:28 CDT)
- Recenter membrane bilayer to unit cell M黨lbacher, Markus (Wed May 12 2010 - 03:37:13 CDT)
- Selecting CUDA devices in VMD 1.8.7 Joakim Swedberg (Tue May 11 2010 - 17:49:54 CDT)
- units of "measure dipole" Edward Lyman (Tue May 11 2010 - 14:47:45 CDT)
- Atom movement within a range of Z value muniyamuthu.raviprasad_at_ndsu.edu (Tue May 11 2010 - 14:47:15 CDT)
- regarding fit_angle.tcl jani vinod (Tue May 11 2010 - 07:04:20 CDT)
- namd gui problem sarah k (Tue May 11 2010 - 02:29:02 CDT)
- LAMMPS trajectory file Anna Ceguerra (Mon May 10 2010 - 21:12:28 CDT)
- Creating AVI movies David Poger (Mon May 10 2010 - 07:28:24 CDT)
- Stereoscopic visualization Emiliano Ippoliti (Sun May 09 2010 - 10:58:46 CDT)
- adding atomselections? Fatemesadat Emami (Sat May 08 2010 - 18:28:48 CDT)
- How to remove hydrogens from a pdb file? Francesca Ricci-Tam (Thu May 06 2010 - 23:17:19 CDT)
- G(r) tcl script not including intramolecular correlations Hall, Lisa Michelle (Thu May 06 2010 - 18:12:49 CDT)
- selecting from different molecules simultaneously Fatemesadat Emami (Wed May 05 2010 - 18:35:26 CDT)
- problem with "animate delete all" Wei Chen (Tue May 04 2010 - 17:07:54 CDT)
- Re: drawing a length scale on the vmd display maria goranovic (Tue May 04 2010 - 03:56:00 CDT)
- drawing a length scale on the vmd display maria goranovic (Tue May 04 2010 - 03:01:07 CDT)
- animation with variable number/names of atoms Maxim Paliy. (Mon May 03 2010 - 09:10:58 CDT)
- Using RMSD in colvar Stefan Franzen (Mon May 03 2010 - 08:48:10 CDT)
- Follow-up to PME question Stefan Franzen (Sun May 02 2010 - 16:54:06 CDT)
- Question Regarding PME Set-up Stefan Franzen (Sun May 02 2010 - 16:48:20 CDT)
- ellipsoidal particles Germain Vallverdu (Sun May 02 2010 - 14:10:43 CDT)
- Tachyon? Fatemesadat Emami (Fri Apr 30 2010 - 11:41:25 CDT)
- choice of VDW radius Nicolas Floquet (Fri Apr 30 2010 - 02:43:58 CDT)
- paratools charmm partial charges Corey Fugate (Thu Apr 29 2010 - 23:30:19 CDT)
- VMD: set light coordinates Nicolas Floquet (Thu Apr 29 2010 - 02:48:16 CDT)
- Paratools Question Corey Fugate (Wed Apr 28 2010 - 23:17:39 CDT)
- topotools Chenchen Wang (Wed Apr 28 2010 - 00:19:21 CDT)
- Is nvidia 3D Vision + quadro working in linux ben rodriguez (Tue Apr 27 2010 - 17:16:48 CDT)
- merge structure : It is working muniyamuthu.raviprasad_at_ndsu.edu (Tue Apr 27 2010 - 10:26:45 CDT)
- Run Python Scripts in VMD on Mac OS X Burkhard Heil (Tue Apr 27 2010 - 06:52:50 CDT)
- representation question Joseph Bylund (Mon Apr 26 2010 - 14:01:40 CDT)
- Conversion of GAMESS Quantum MD trajectory file Diego Javier Alonso de Armi駉 (Mon Apr 26 2010 - 13:59:49 CDT)
- merge structure: error processing angles muniyamuthu.raviprasad_at_ndsu.edu (Fri Apr 23 2010 - 17:36:32 CDT)
- Symmetry Tool Error (Draw): invalid command name "getargs" and expected integer but got "" Mario Saavedra (Fri Apr 23 2010 - 16:41:06 CDT)
- VRPN driver for Novint Falcon haptic device available - Looking for Testers Axel Kohlmeyer (Fri Apr 23 2010 - 15:59:34 CDT)
- Problems with licorice representation when rendering 3D PDF for Power Point Bob Johnson (Thu Apr 22 2010 - 14:56:52 CDT)
- Coloring atoms based on timeframe range? Bjoern Olausson (Thu Apr 22 2010 - 08:51:34 CDT)
- Re: namd-l: building a MARTINI bilayer Peter Freddolino (Wed Apr 21 2010 - 13:16:00 CDT)
- High quality movies, bmp frames and videomach=poor quality Jennifer Williams (Wed Apr 21 2010 - 05:57:11 CDT)
- Fwd: High quality movies, bmp frames and videomach=poor quality Jennifer Williams (Wed Apr 21 2010 - 05:56:33 CDT)
- Fragments Olaf Lenz (Wed Apr 21 2010 - 03:19:04 CDT)
- Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Tue Apr 20 2010 - 14:04:31 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Tue Apr 20 2010 - 18:02:23 CDT)
- Re: Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Tue Apr 20 2010 - 20:04:05 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Wed Apr 21 2010 - 07:56:35 CDT)
- Re: Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Wed Apr 21 2010 - 08:06:07 CDT)
- Re: Problem with creation of child fragment in Molefacture Yongmei Pan (Wed Apr 21 2010 - 09:15:57 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Wed Apr 21 2010 - 09:51:35 CDT)
- Re: Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Tue Apr 20 2010 - 20:04:05 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Tue Apr 20 2010 - 18:02:23 CDT)
- rmsd trajectory tool question Joseph Bylund (Tue Apr 20 2010 - 13:23:07 CDT)
- run_vmd_tmp: Permission denied adil mughal (Tue Apr 20 2010 - 10:37:09 CDT)
- pbc and measure hbond yongpingzeng (Tue Apr 20 2010 - 10:11:38 CDT)
- pbc and measure hbond yongpingzeng (Tue Apr 20 2010 - 10:07:29 CDT)
- vmd does not read pqr file correct, vmd parse chain information incorrect. Knut J鴕gen Bjuland (Tue Apr 20 2010 - 09:58:35 CDT)
- vmd does not read pqr file correct, vmd parse chain information incorrect. Knut J鴕gen Bjuland (Tue Apr 20 2010 - 09:53:57 CDT)
- Re: vmd-l digest V1 #1583 Nicholas Musolino (Sun Apr 18 2010 - 20:14:36 CDT)
- Load and change representation? Fatemesadat Emami (Sat Apr 17 2010 - 16:51:53 CDT)
- Problem with vmd and pqr file Knut J鴕gen Bjuland (Sat Apr 17 2010 - 13:51:13 CDT)
- RE : pbc tools in vmd for simulation bharat gupta (Sat Apr 17 2010 - 08:40:16 CDT)
- problem about running chiloo777 777 (Sat Apr 17 2010 - 01:54:41 CDT)
- Load and change representation? Fatemesadat Emami (Fri Apr 16 2010 - 23:37:32 CDT)
- Resonable visualisation of the molecules inside the periodic box ? Marek Maly (Fri Apr 16 2010 - 09:59:50 CDT)
- Colouring atoms named with the same first letter Jennifer Williams (Fri Apr 16 2010 - 08:15:07 CDT)
- Re: Colouring atoms named with the same first letter Joshua Anderson (Fri Apr 16 2010 - 11:09:23 CDT)
- Re: Colouring atoms named with the same first letter John Stone (Fri Apr 16 2010 - 16:42:22 CDT)
- Re: Colouring atoms named with the same first letter Jennifer Williams (Tue Apr 20 2010 - 10:13:04 CDT)
- recognizing TCL variables in a matrix argument Ronald Salesky (Thu Apr 15 2010 - 16:06:56 CDT)
- Re: recognizing TCL variables in a matrix argument Axel Kohlmeyer (Thu Apr 15 2010 - 19:45:15 CDT)
- mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) Andrew M. Simms (Fri Apr 16 2010 - 11:30:09 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 17:00:15 CDT)
- RE: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) Andrew M. Simms (Fri Apr 16 2010 - 17:48:11 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 18:10:22 CDT)
- RE: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) Andrew M. Simms (Fri Apr 16 2010 - 18:18:16 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 18:22:20 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 17:00:15 CDT)
- how to download & install QMTool plugin Russell, John Thomas (Wed Apr 14 2010 - 09:33:33 CDT)
- how to pick certain water molecular from a .mdcrd 庞雪芹 Pang Xueqin (Tue Apr 13 2010 - 01:37:16 CDT)
- VMD has problem displaying glsl rendermode Euclid Sun (Mon Apr 12 2010 - 09:04:29 CDT)
- calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Mon Apr 12 2010 - 03:43:25 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Mon Apr 12 2010 - 06:38:16 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 08:08:08 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Mon Apr 12 2010 - 08:45:13 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 08:58:28 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Mon Apr 12 2010 - 12:36:36 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Mon Apr 12 2010 - 14:24:17 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Tue Jun 29 2010 - 09:14:08 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubeti膷 (Mon Apr 12 2010 - 06:38:16 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
- Andres Morales sent you a little gift Andres Morales (Sun Apr 11 2010 - 20:33:52 CDT)
- DynamicBonding Ziemys, Arturas (Fri Apr 09 2010 - 14:10:56 CDT)
- regarding installation Asfa Ali (Fri Apr 09 2010 - 10:45:45 CDT)
- AutoHotkey script for managing VMD windows Ajasja Ljubeti膷 (Fri Apr 09 2010 - 07:56:42 CDT)
- Turn off initial VMD animation and "menu tkcon on" problem Ajasja Ljubeti膷 (Fri Apr 09 2010 - 07:18:57 CDT)
- build dependency Knut J鴕gen Bjuland (Fri Apr 09 2010 - 02:28:48 CDT)
- question about vmd use Knut J鴕gen Bjuland (Fri Apr 09 2010 - 02:26:32 CDT)
- creating and appending to DCD in VMD Nicholas Musolino (Thu Apr 08 2010 - 15:50:04 CDT)
- Hydrogen bonds plugin obscures charged atoms -- help! Hurt, Darrell (NIH/NIAID) [E] (Thu Apr 08 2010 - 11:48:39 CDT)
- Rotating the current view Muhammet ﹕met T鰎eh Balta (Thu Apr 08 2010 - 11:10:17 CDT)
- center of unit cell Yinglong Miao (Thu Apr 08 2010 - 10:10:17 CDT)
- problem with IED: 'numpy.ndarray' object has no attribute 'typecode' J. Rui Rodrigues (Wed Apr 07 2010 - 14:01:37 CDT)
- Way to change ColorScale Method to single color gradient? Bjoern Olausson (Wed Apr 07 2010 - 03:33:18 CDT)
- problems with hotkeys and "user add key" command Rocchia Walter (Mon Apr 05 2010 - 16:31:03 CDT)
- NAMD energy plugin question Rachel Ruskin (Mon Apr 05 2010 - 12:02:44 CDT)
- Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 08:58:55 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 09:52:55 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 11:33:46 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 11:56:07 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 14:06:38 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 14:30:21 CDT)
- Re: Generating nanotubes psf file Ronald Salesky (Mon Apr 05 2010 - 14:33:44 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 15:47:24 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 16:05:34 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 11:33:46 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 09:52:55 CDT)
- [Help] cross-sections Jervis Chu (Sat Apr 03 2010 - 23:18:54 CDT)
- RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5) J. Rui Rodrigues (Thu Apr 01 2010 - 11:51:06 CDT)
- Extract specific frames from trajectory Cathal Leahy (Thu Apr 01 2010 - 10:40:19 CDT)
- Creating length dependent coloured bonds in VMD Willie Maddox (Tue Mar 30 2010 - 14:17:33 CDT)
- Creating bonds using VMD Mihir Tungare (Mon Mar 29 2010 - 16:34:21 CDT)
- (no subject) Irene Newhouse (Mon Mar 29 2010 - 15:12:41 CDT)
- can't find file sarah k (Mon Mar 29 2010 - 02:46:20 CDT)
- VMD 1.8.7 hangs on launch Leif Halvorsen (Fri Mar 26 2010 - 14:37:03 CDT)
- problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory Knut J鴕gen Bjuland (Thu Mar 25 2010 - 04:26:35 CDT)
- Re: problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory Axel Kohlmeyer (Thu Mar 25 2010 - 06:01:48 CDT)
- visualizing trr file gurvisha sandhu (Thu Mar 25 2010 - 03:27:23 CDT)
- Visualisation of VTF trajectories using VMD under Windows ? Marek Maly (Wed Mar 24 2010 - 05:31:36 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Olaf Lenz (Wed Mar 24 2010 - 10:19:33 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? John Stone (Wed Mar 24 2010 - 11:01:16 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Ajasja Ljubeti膷 (Wed Mar 24 2010 - 11:29:10 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Marek Maly (Wed Mar 24 2010 - 17:24:56 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Olaf Lenz (Wed Mar 24 2010 - 10:19:33 CDT)
- solventplugin-Watermodels Salvador H-V (Tue Mar 23 2010 - 13:08:13 CDT)
- Wrapping membrane to center of PBC-Box Bjoern Olausson (Tue Mar 23 2010 - 12:06:31 CDT)
- implicit solvent politr_at_huji.ac.il (Tue Mar 23 2010 - 09:16:29 CDT)
- Fwd: [ACS award information, March 30 deadline] John Stone (Mon Mar 22 2010 - 12:23:45 CDT)
- writepdb using selection form different molecules Bernardo Sosa Padilla Araujo (Fri Mar 19 2010 - 23:29:56 CDT)
- Running IMD interactivelly under the shell Nuno Sousa Cerqueira (Thu Mar 18 2010 - 14:18:22 CDT)
- why electrostatic interaction energy increases with the increase of cutoff using namdenergy Lan Hua (Wed Mar 17 2010 - 21:18:55 CDT)
- Selecting AMBER ions Cl- and Na+ using VMD DimitryASuplatov (Wed Mar 17 2010 - 06:42:41 CDT)
- Installing VMD Salvador H-V (Tue Mar 16 2010 - 12:26:08 CDT)
- (no subject) Roshan Tasgaonkar (Mon Mar 15 2010 - 18:07:34 CDT)
- why huge positive vdw energy from namdenergy plugin Lan Hua (Mon Mar 15 2010 - 18:02:56 CDT)
- Re: Loading Gaussian Log File into Paratool Kov醕s, S醤dor 羋醡 (Mon Mar 15 2010 - 16:54:39 CDT)
- Aligning Desmond Trajectories again Irene Newhouse (Mon Mar 15 2010 - 15:05:46 CDT)
- CGenFF atom types Ziemys, Arturas (Sun Mar 14 2010 - 19:44:53 CDT)
- IMD with Phantom Omni Mark Cunningham (Sun Mar 14 2010 - 14:45:21 CDT)
- running ILS under Windows 7 Irene Newhouse (Sat Mar 13 2010 - 22:32:15 CST)
- Loading Gaussian Log File into Paratool Will Bricker (Sat Mar 13 2010 - 16:19:08 CST)
- Topotools1.0 muniyamuthu.raviprasad_at_ndsu.edu (Sat Mar 13 2010 - 13:04:38 CST)
- Problems with VMD installation Fedora 12 64bits Edith Euan (Sat Mar 13 2010 - 00:57:39 CST)
- Patch for Three or More monomers muniyamuthu.raviprasad_at_ndsu.edu (Fri Mar 12 2010 - 10:41:03 CST)
- CUDA out of memory Ajasja Ljubeti膷 (Fri Mar 12 2010 - 08:22:40 CST)
- Re: WIN64 build Ajasja Ljubeti膷 (Fri Mar 12 2010 - 07:46:55 CST)
- Re: properly applying patches to create DPPC JC Gumbart (Thu Mar 11 2010 - 17:48:11 CST)
- (no subject) Roshan Tasgaonkar (Wed Mar 10 2010 - 22:55:31 CST)
- properly applying patches to create DPPC Ronald Salesky (Wed Mar 10 2010 - 18:33:59 CST)
- Problems with "animate next" inside for-loops nicholas lee (Wed Mar 10 2010 - 16:41:45 CST)
- Charmm parameters for Polybutylene terephthalate (PBT) muniyamuthu.raviprasad_at_ndsu.edu (Wed Mar 10 2010 - 13:20:38 CST)
- Isosurface wraps in PME Electrostatics calc'n Irene Newhouse (Tue Mar 09 2010 - 14:06:02 CST)
- MergeStructs Plugin in text mode Alexandre Suman de Araujo (Tue Mar 09 2010 - 12:24:46 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Tue Mar 09 2010 - 13:24:49 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Wed Mar 10 2010 - 06:03:01 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Wed Mar 10 2010 - 07:57:38 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Thu Mar 11 2010 - 12:04:44 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Fri Mar 12 2010 - 09:11:24 CST)
- Re: MergeStructs Plugin in text mode Robert Brunner (Fri Mar 12 2010 - 11:51:54 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Fri Mar 12 2010 - 13:40:03 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Wed Mar 10 2010 - 06:03:01 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Tue Mar 09 2010 - 13:24:49 CST)
- keyboard-mouse-controlled view for VMDMovie plugin Tibbitt, Jeffrey A. (Tue Mar 09 2010 - 10:27:36 CST)
- Viewing changing beta along a trajectory Thomas Steinbrecher (Tue Mar 09 2010 - 10:26:16 CST)
- Error vmd and Nvidia Graphik Card Christian Wohlschlager (Tue Mar 09 2010 - 10:19:47 CST)
- analyzing gromacs trajectory (.trr) with VMD politr_at_huji.ac.il (Tue Mar 09 2010 - 03:48:24 CST)
- Mean atom position Katherine Parra (Mon Mar 08 2010 - 13:04:47 CST)
- (no subject) Roshan Tasgaonkar (Mon Mar 08 2010 - 12:21:08 CST)
- Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 08:59:14 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 09:25:27 CST)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 10:04:00 CST)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 10:05:36 CST)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 13:47:43 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 14:32:10 CST)
- Re: Add a surface to a pdb file Taufik Al-Sarraj (Wed May 05 2010 - 18:53:30 CDT)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 09:25:27 CST)
- script for area per lipid Demet Akten (Mon Mar 08 2010 - 06:39:16 CST)
- trajectory_path.tcl queries Francesco Pietra (Sun Mar 07 2010 - 02:55:03 CST)
- Question Regarding User-Defined Trajectories Wallace Dumars (Fri Mar 05 2010 - 15:53:01 CST)
- MDFF plug-in A D (Fri Mar 05 2010 - 15:09:06 CST)
- STRIDE error: too many atoms in res Nadine Utz (Fri Mar 05 2010 - 10:29:34 CST)
- VMD-Cones and Povray rendering Olaf Lenz (Fri Mar 05 2010 - 02:31:11 CST)
- pbc in water count Agarwal, Silvi (Thu Mar 04 2010 - 12:07:37 CST)
- CUDA issues Filippo Federici (Thu Mar 04 2010 - 01:18:14 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 08:11:53 CST)
- Re: CUDA issues Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 10:32:06 CST)
- Re: CUDA issues Filippo Federici Canova (Thu Mar 04 2010 - 11:54:09 CST)
- Re: CUDA issues Axel Kohlmeyer (Thu Mar 04 2010 - 13:16:58 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 13:54:49 CST)
- Re: CUDA issues Filippo Federici (Fri Mar 05 2010 - 01:38:40 CST)
- Re: CUDA issues John Stone (Mon Mar 08 2010 - 11:19:00 CST)
- Re: CUDA issues Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 08:11:53 CST)
- Finding residues with some distance Neeraj Jagdish Agrawal (Wed Mar 03 2010 - 17:38:33 CST)
- intersurf plugin missing in VMD 1.8.7 ? Bennion, Brian (Wed Mar 03 2010 - 11:11:49 CST)
- Binary VMD buid for Linux, text mode only Benjamin Bouvier (Wed Mar 03 2010 - 09:26:20 CST)
- display of the atom number beyond 100000 in pdb file YangMingjun (Tue Mar 02 2010 - 20:36:25 CST)
- 3D Connexion - Space Navigator (OSX drivers) Tibbitt, Jeffrey A. (Tue Mar 02 2010 - 20:24:34 CST)
- wrapping dimer units in a Desmond traj Irene Newhouse (Tue Mar 02 2010 - 13:51:25 CST)
- Running Python within VMD radak004_at_umn.edu (Tue Mar 02 2010 - 13:07:51 CST)
- psfgen for protein-RNA complex YangMingjun (Tue Mar 02 2010 - 10:50:13 CST)
- measure command problem Bernardo Sosa Padilla Araujo (Mon Mar 01 2010 - 21:44:09 CST)
- Generating a PSF for a Non-protien Aziz, John (Mon Mar 01 2010 - 08:27:10 CST)
- Problem with New cartoon representation Carla Jamous (Mon Mar 01 2010 - 02:37:33 CST)
- Hbonds calc with residue not in CHARMm Irene Newhouse (Fri Feb 26 2010 - 14:40:28 CST)
- Rotating user-defined graphics? Reid Van Lehn (Fri Feb 26 2010 - 12:24:43 CST)
- Can anyone help me get the coordinate of the cylinders in the cartoon representation? Chen, Bo (NIH/NIDDK) [F] (Fri Feb 26 2010 - 11:11:42 CST)
- slower trajectory loading when CUDA support is enabled Michel Espinoza-Fonseca (Thu Feb 25 2010 - 14:35:18 CST)
- VMD Asfa Ali (Thu Feb 25 2010 - 13:18:21 CST)
- about command measure dipole matziast_at_med.uth.gr (Wed Feb 24 2010 - 12:37:49 CST)
- Bigdcd and Namdenergy batch problem Andrea Carotti (Wed Feb 24 2010 - 10:21:34 CST)
- Regarding coordinates transformation aneesh cna (Wed Feb 24 2010 - 01:04:27 CST)
- a problem in visualizing dump files with vmd Robabeh Moosavi (Tue Feb 23 2010 - 05:43:46 CST)
- VMD water protein anlysis snoze pa (Mon Feb 22 2010 - 15:39:54 CST)
- Probe orientations in ILS Irene Newhouse (Mon Feb 22 2010 - 13:19:56 CST)
- Mutator plugin console q (Mon Feb 22 2010 - 07:04:50 CST)
- gradient background not rendered BIN ZHANG (Fri Feb 19 2010 - 16:50:59 CST)
- Numeric Library of Python for VMD 1.8.7 Yue Yang (Wed Feb 17 2010 - 22:22:27 CST)
- producing high quality video on Mac Dan Lussier (Wed Feb 17 2010 - 17:51:03 CST)
- 2 questions about "measure sasa" Edward Lyman (Wed Feb 17 2010 - 14:40:53 CST)
- creating a povray file gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 10:44:02 CST)
- problem of installing vmd 1.8.7 on Mac osx 10.4.11 Jane Bailey (Wed Feb 17 2010 - 09:35:53 CST)
- Porcupine update Carsten Olbrich (Wed Feb 17 2010 - 03:03:27 CST)
- How to make Porcupine plots in VMD Surendra Kumar Jain (Tue Feb 16 2010 - 13:28:07 CST)
- VMD and Amber coordinates rebeca (Tue Feb 16 2010 - 12:31:52 CST)
- get view direction Jacob Kirkensgaard (Tue Feb 16 2010 - 03:58:24 CST)
- PSF Generation BIPLAB NANDI (Mon Feb 15 2010 - 23:10:53 CST)
- Can't find C-PDB bond parameters Francesco Pietra (Mon Feb 15 2010 - 03:46:29 CST)
- running namd2 on Mac PPC cluster Robert Wohlhueter (Sun Feb 14 2010 - 13:13:16 CST)
- CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES Francesco Pietra (Sun Feb 14 2010 - 10:26:01 CST)
- top_all22_prot.inp & par_all22_prot.inp geetha9999_at_aol.com (Sun Feb 14 2010 - 09:49:24 CST)
- Retrieving an atom and its coordinates Marc Charendoff (Sat Feb 13 2010 - 16:19:50 CST)
- Mirror reflection Rachel Ruskin (Sat Feb 13 2010 - 01:24:58 CST)
- psfgen generates 0 atom .psf file Ronald Salesky (Fri Feb 12 2010 - 19:41:10 CST)
- X_ChangeProperty error Bennion, Brian (Fri Feb 12 2010 - 14:50:27 CST)
- xyz file and VASP CHGCAR file do not overlap Decai Yu (Fri Feb 12 2010 - 13:29:44 CST)
- RMSD trajectory tools Asfa Ali (Fri Feb 12 2010 - 06:16:22 CST)
- amino acid mutation plugin geetha9999_at_aol.com (Thu Feb 11 2010 - 13:37:08 CST)
- how to set PBC for ILS Irene Newhouse (Wed Feb 10 2010 - 16:35:17 CST)
- Boolean operators and the new atomsel type Daniel Terry (Wed Feb 10 2010 - 12:30:21 CST)
- convert unformatted delphi phi to formatted Jun Cheng (Wed Feb 10 2010 - 10:09:55 CST)
- psf file generation.? zubin mehta (Wed Feb 10 2010 - 05:58:45 CST)
- invalid command name 'vmdcon' zubin mehta (Wed Feb 10 2010 - 04:41:01 CST)
- What occupancy at the Hbond plugin mean? Itamar Kass (Tue Feb 09 2010 - 05:15:27 CST)
- how long do ILS runs take? Irene Newhouse (Mon Feb 08 2010 - 14:05:30 CST)
- Converting tracker coordinates to molecule coordinate for selection Dipesh Bhattarai (Mon Feb 08 2010 - 10:57:03 CST)
- Blank thumbnails and non-working snapshots Christopher McLean (Mon Feb 08 2010 - 09:55:13 CST)
- Re: Blank thumbnails and non-working snapshots Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 08:12:37 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Tue Feb 09 2010 - 09:04:06 CST)
- RE: Blank thumbnails and non-working snapshots Axel Kohlmeyer (Tue Feb 09 2010 - 08:24:14 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 09:29:32 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 09:44:00 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 10:07:31 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Thu Feb 11 2010 - 03:18:29 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
- Re: Blank thumbnails and non-working snapshots Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
- problem with generating PSF file for guanine based molecule Parisa Akhski (Sun Feb 07 2010 - 11:51:03 CST)
- VMD, Tachyon and depth of field Marc Baaden (Sat Feb 06 2010 - 10:07:07 CST)
- how to do acetylated lysine in VMD Vo Cam Quy (Fri Feb 05 2010 - 14:27:46 CST)
- Changing decimal places in a label? Dr. Seth Olsen (Wed Feb 03 2010 - 23:21:12 CST)
- Trouble building VMD 1.8.7 on Mac OS X Joshua Anderson (Wed Feb 03 2010 - 15:39:52 CST)
- molecular dipole moment Jelle van Sijl (Wed Feb 03 2010 - 11:21:33 CST)
- VMD script: save coordinates problem martin klvana (Mon Feb 01 2010 - 20:25:49 CST)
- running LAMMPS output via VMD Krigel, Igal (Mon Feb 01 2010 - 06:10:56 CST)
- Number of H bond formation in VMD snoze pa (Thu Jan 28 2010 - 17:32:10 CST)
- vmd hbond Calculation snoze pa (Thu Jan 28 2010 - 11:54:45 CST)
- import xyz file Naiyin Yu (Tue Jan 26 2010 - 16:51:04 CST)
- About Paratool Caio Veloso (Tue Jan 26 2010 - 11:21:13 CST)
- VMD version 1.8.7 (LINUX OpenGL, CUDA) on UBUNTU 9.10 A D (Mon Jan 25 2010 - 13:50:06 CST)
- SASA and SESA Khaled Barakat (Sun Jan 24 2010 - 14:44:45 CST)
- Re: VMD installation: Windows OpenGL John Stone (Sun Jan 24 2010 - 13:33:16 CST)
- Number of Hydrogen Bonds among Water an Protein Mert G黵 (Sun Jan 24 2010 - 13:17:09 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Leonardo Trabuco (Sun Jan 24 2010 - 13:22:31 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert G黵 (Sun Jan 24 2010 - 14:00:32 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert G黵 (Sun Jan 24 2010 - 14:25:52 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Leonardo Trabuco (Sun Jan 24 2010 - 16:42:01 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert G黵 (Mon Jan 25 2010 - 07:50:25 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Axel Kohlmeyer (Mon Jan 25 2010 - 08:55:05 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert G黵 (Tue Jan 26 2010 - 15:31:45 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Axel Kohlmeyer (Tue Jan 26 2010 - 15:39:18 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert G黵 (Sun Jan 24 2010 - 14:00:32 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Leonardo Trabuco (Sun Jan 24 2010 - 13:22:31 CST)
- autopsf needs at least one atom error Ronald Salesky (Sun Jan 24 2010 - 12:43:51 CST)
- autopsf generator need at least one atom error Ronald Salesky (Sun Jan 24 2010 - 12:29:12 CST)
- Graphics card for molecular graphics Edelmiro Moman (Sun Jan 24 2010 - 10:57:42 CST)
- SASA and SESA Khaled Barakat (Fri Jan 22 2010 - 20:22:25 CST)
- Syntax and capabilities of writetrr Marc Baaden (Fri Jan 22 2010 - 02:43:27 CST)
- water in a certein box Naiyin Yu (Thu Jan 21 2010 - 17:09:10 CST)
- sasa function Bernhard Knapp (Thu Jan 21 2010 - 02:32:31 CST)
- 3D glasses with LCD Nicolas Floquet (Wed Jan 20 2010 - 06:52:16 CST)
- Re: namd-l: NAMD ibverbs not working on new cluster Carsten Olbrich (Wed Jan 20 2010 - 06:49:43 CST)
- 3D Glasses with LCD for VMD Nicolas Floquet (Wed Jan 20 2010 - 06:46:11 CST)
- How to display real time when reading trr file? Cun Zhang (Wed Jan 20 2010 - 01:59:20 CST)
- How to display real time when reading trr file? Cun Zhang (Wed Jan 20 2010 - 01:59:16 CST)
- 3D Stereo : Windows 7, nVIDIA GEFORCE Deepangi Pandit (Tue Jan 19 2010 - 17:32:04 CST)
- visualizing APBS output Irene Newhouse (Tue Jan 19 2010 - 13:31:08 CST)
- Selection tool Narasimhan LOGANATHAN (Tue Jan 19 2010 - 03:06:21 CST)
- masure distance trajectory - delete variable Balazs Jojart (Sun Jan 17 2010 - 05:11:07 CST)
- bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Fri Jan 15 2010 - 11:30:48 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Fri Jan 15 2010 - 12:01:17 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 10:24:45 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 11:12:11 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Axel Kohlmeyer (Wed Jan 20 2010 - 11:42:57 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 12:24:16 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 12:37:38 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 13:48:09 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 14:01:45 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 14:12:07 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Axel Kohlmeyer (Fri Jan 15 2010 - 12:11:21 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Fri Jan 15 2010 - 12:01:17 CST)
- APBS tutorial link broken Irene Newhouse (Thu Jan 14 2010 - 17:01:14 CST)
- labeling bonds between two atoms gurunath katagi (Thu Jan 14 2010 - 12:12:36 CST)
- harmonic constraint when equilibrate the system Naiyin Yu (Wed Jan 13 2010 - 21:44:03 CST)
- Topotools plugin: guessimpropers? MyLinkka (Wed Jan 13 2010 - 08:28:28 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Wed Jan 13 2010 - 09:19:16 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Wed Jan 13 2010 - 10:41:18 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Wed Jan 13 2010 - 11:08:36 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 06:05:53 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Fri Jan 15 2010 - 09:10:27 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 17:53:39 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Fri Jan 15 2010 - 18:12:12 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 21:54:19 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Fri Jan 15 2010 - 22:36:14 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 23:25:21 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Wed Jan 13 2010 - 10:41:18 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Wed Jan 13 2010 - 09:19:16 CST)
- HOOMD plugin Benjamin Bouvier (Tue Jan 12 2010 - 11:04:08 CST)
- PME isosurface not superimposed on protein Irene Newhouse (Mon Jan 11 2010 - 16:20:50 CST)
- vmdcollab in VMD xaneorat_at_mail.uni-paderborn.de (Mon Jan 11 2010 - 05:19:33 CST)
- Maestro file export Jacob Poehlsgaard (Mon Jan 11 2010 - 03:21:22 CST)
- display surface amino acid beads Christine Horejs (Sat Jan 09 2010 - 04:22:34 CST)
- obscurity in sbcg tutorial description Francesco Pietra (Sat Jan 09 2010 - 03:37:49 CST)
- Compiling VMD plugins on Windows? Olaf Lenz (Fri Jan 08 2010 - 09:20:47 CST)
- Fwd: Re: allowing negative 'resid' numbers in selection strings Vlad Cojocaru (Fri Jan 08 2010 - 09:10:02 CST)
- allowing negative 'resid' numbers in selection strings Vlad Cojocaru (Fri Jan 08 2010 - 07:56:16 CST)
- vmd 1.8.7 getting the terminal free maria goranovic (Fri Jan 08 2010 - 05:20:46 CST)
- VMD lammps plugin: a possible bug MyLinkka (Thu Jan 07 2010 - 10:35:57 CST)
- VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 04:32:30 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Olaf Lenz (Wed Jan 06 2010 - 05:57:47 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Wed Jan 06 2010 - 07:41:05 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 08:26:00 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 08:58:50 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? John Stone (Wed Jan 06 2010 - 10:10:51 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Wed Jan 06 2010 - 10:48:28 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Wayne Dawson (Wed Jan 06 2010 - 20:48:34 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Wed Jan 06 2010 - 22:22:56 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Wayne Dawson (Thu Jan 07 2010 - 01:58:26 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Thu Jan 07 2010 - 04:36:42 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Thu Jan 07 2010 - 06:04:14 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Thu Jan 07 2010 - 05:55:29 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 08:26:00 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? John Stone (Wed Jan 06 2010 - 10:06:34 CST)
- CUDA-NAMD hangs -- check the Northbridge temp! Biff Forbush (Tue Jan 05 2010 - 21:51:51 CST)
- conflict between VMD and Netbeans IDE on MacOSX Wayne Dawson (Tue Jan 05 2010 - 21:16:58 CST)
- New Cartoon representation problem Kassem Ghaddar (Tue Jan 05 2010 - 04:09:16 CST)
- slow visualization using molecular representations with VMD 1.8.7 on mac Matthieu Chavent (Tue Jan 05 2010 - 03:47:17 CST)
- VMD-Xplor interface problem Vitaly Vostrikov (Sun Jan 03 2010 - 20:18:01 CST)
- Failure of AutoSCFBuilder to recognize all monomers Francesco Pietra (Sun Jan 03 2010 - 04:54:24 CST)
- vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sat Jan 02 2010 - 18:16:54 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Sun Jan 03 2010 - 01:56:14 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sun Jan 03 2010 - 11:41:03 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Sun Jan 03 2010 - 17:46:21 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sun Jan 03 2010 - 22:19:29 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Wed Jan 06 2010 - 12:56:47 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Wed Jan 06 2010 - 21:48:14 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Tue Jan 12 2010 - 00:02:08 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Tue Jan 12 2010 - 10:27:04 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sun Jan 03 2010 - 11:41:03 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Sun Jan 03 2010 - 01:56:14 CST)
- reply Prathit Chatterjee (Sat Jan 02 2010 - 05:33:04 CST)
- About the criterion of H bond yongle (Sat Jan 02 2010 - 02:23:18 CST)
- vmd installation in linux Prathit Chatterjee (Fri Jan 01 2010 - 22:08:09 CST)
- Re: vmd installation in linux John Stone (Sat Jan 02 2010 - 01:08:58 CST)
- Re: vmd installation in linux Ocar Campos (Sat Jan 02 2010 - 06:20:15 CST)
- Re: vmd installation in linux Prathit Chatterjee (Sun Jan 03 2010 - 04:09:13 CST)
- Re: vmd installation in linux jani sahil (Sun Jan 03 2010 - 05:15:26 CST)
- Re: vmd installation in linux Axel Kohlmeyer (Sun Jan 03 2010 - 05:23:58 CST)
- Re: vmd installation in linux Ocar Campos (Fri Jan 08 2010 - 06:48:56 CST)
- Re: vmd installation in linux Axel Kohlmeyer (Fri Jan 08 2010 - 08:27:06 CST)
- Re: vmd installation in linux Ocar Campos (Fri Jan 08 2010 - 10:14:50 CST)
- Re: vmd installation in linux Axel Kohlmeyer (Fri Jan 08 2010 - 10:35:48 CST)
- Re: vmd installation in linux Ocar Campos (Fri Jan 08 2010 - 10:37:12 CST)
- Re: vmd installation in linux John Stone (Sat Jan 02 2010 - 01:08:58 CST)
- Superposition of Multiple Trajectory Timesteps 周文昌 (Thu Dec 31 2009 - 05:47:20 CST)
- Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 08:08:03 CST)
- Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 10:57:08 CST)
- Re:Re: Re: Superposition of Multiple Trajectory Timesteps wenchangyu2006_at_gmail.com (Fri Jan 01 2010 - 06:28:22 CST)
- Re: Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Fri Jan 01 2010 - 10:16:38 CST)
- Re: Re: Re: Superposition of Multiple Trajectory Timesteps John Stone (Fri Jan 01 2010 - 17:43:58 CST)
- Re:Re: Re: Re: Superposition of Multiple Trajectory Timesteps wenchangyu2006_at_gmail.com (Sat Jan 02 2010 - 16:00:44 CST)
- Re: Re: Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Sat Jan 02 2010 - 16:24:07 CST)
- Re:Re: Re: Re: Re: Superposition of Multiple Trajectory Timesteps wenchangyu2006_at_gmail.com (Sun Jan 03 2010 - 02:48:55 CST)
- Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 10:57:08 CST)
- Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 08:08:03 CST)
- sbcg with multimers Francesco Pietra (Wed Dec 30 2009 - 15:22:43 CST)
- IMD in VMD Lixia Jin Day (Tue Dec 29 2009 - 17:42:57 CST)
- UNIT CELL Narasimhan LOGANATHAN (Tue Dec 29 2009 - 09:49:29 CST)
- Re: UNIT CELL Axel Kohlmeyer (Tue Dec 29 2009 - 10:37:59 CST)
- Re: UNIT CELL Olaf Lenz (Wed Dec 30 2009 - 04:13:59 CST)
- Re: UNIT CELL Narasimhan LOGANATHAN (Wed Jan 06 2010 - 02:37:11 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 04:58:21 CST)
- Re: UNIT CELL Narasimhan LOGANATHAN (Wed Jan 06 2010 - 05:21:19 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Dec 30 2009 - 04:13:59 CST)
- Re: UNIT CELL Axel Kohlmeyer (Tue Dec 29 2009 - 10:37:59 CST)
- PDB file Burak Cankurtaran (Tue Dec 29 2009 - 05:41:23 CST)
- Re: Problem when using VMD Python Library Cun Zhang (Sun Dec 27 2009 - 08:31:04 CST)
- Problem when using VMD Python Library Cun Zhang (Fri Dec 25 2009 - 06:03:46 CST)
- remove water snoze pa (Wed Dec 23 2009 - 14:44:45 CST)
- installation problem Jin Wen (Tue Dec 22 2009 - 17:46:43 CST)
- rdf curve gurunath katagi (Tue Dec 22 2009 - 08:17:57 CST)
- superimposed structure leila karami (Sun Dec 20 2009 - 08:46:03 CST)
- superimposed structure leila karami (Sun Dec 20 2009 - 08:07:16 CST)
- vmd won't display in lines Gard Nelson (Fri Dec 18 2009 - 16:17:45 CST)
- Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 16:45:07 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 17:03:07 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 18:05:34 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 19:05:29 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 19:17:47 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 19:20:35 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 19:35:12 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 19:52:56 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 20:08:08 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Wed Dec 30 2009 - 13:03:05 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Mon Jan 11 2010 - 19:24:16 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Jan 14 2010 - 15:02:33 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Jan 14 2010 - 16:44:32 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Jan 14 2010 - 19:03:21 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Jan 14 2010 - 23:27:51 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Wed Jan 20 2010 - 17:38:13 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Fri Jan 22 2010 - 18:15:43 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 18:05:34 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 17:03:07 CST)
- Re: Request for information John Stone (Thu Dec 17 2009 - 13:29:52 CST)
- Fwd: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation Francesco Pietra (Thu Dec 17 2009 - 02:34:23 CST)
- Problem generating psf file in psfgen Ranyere Deyler (Wed Dec 16 2009 - 23:24:58 CST)
- Re: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation Peter Freddolino (Wed Dec 16 2009 - 18:49:13 CST)
- Graphical Representations doesn't recognize chain ID z Samuel Coulbourn Flores (Wed Dec 16 2009 - 09:59:47 CST)
- VMD plugin: filenames supposed to have dot in it?!?! Rob (Wed Dec 16 2009 - 01:07:20 CST)
- VMD plugin for abinit Rob (Tue Dec 15 2009 - 21:47:08 CST)
- how to label the distances using tk console mode YangMingjun (Tue Dec 15 2009 - 19:24:00 CST)
- VMD on AIX --- successful build, failed execution Rich Cook (Tue Dec 15 2009 - 16:26:00 CST)
- Issues with flickering display using VMD 1.8.7 displaying over X11 to remote Mac Rich Cook (Tue Dec 15 2009 - 15:03:07 CST)
- Graphics card for VMD Berit Hinnemann (Tue Dec 15 2009 - 11:25:25 CST)
- hbonds.tcl selection problem in command-line Nicola Giacche' (Tue Dec 15 2009 - 05:25:01 CST)
- IDs of representations Carsten Olbrich (Tue Dec 15 2009 - 03:30:54 CST)
- Re: namd-l: Fwd: conf file for coarse grained simulation Francesco Pietra (Tue Dec 15 2009 - 02:40:55 CST)
- superimposed structure leila karami (Tue Dec 15 2009 - 00:21:04 CST)
- File owner/group settings after installing precompiled VMD. Rob (Mon Dec 14 2009 - 21:13:23 CST)
- solvating diferent regions in VMD Ranyere Deyler (Mon Dec 14 2009 - 17:07:38 CST)
- PBC + DCD wrap/unwrap Goutham (Mon Dec 14 2009 - 13:37:36 CST)
- Re: namd CG minimization error: unable to find angle parameters for nxg nxx nxg Francesco Pietra (Fri Dec 11 2009 - 09:52:43 CST)
- namd CG minimization error: unable to find angle parameters for nxg nxx nxg Francesco Pietra (Thu Dec 10 2009 - 10:27:13 CST)
- Fwd: Calculation the Surface Area/Volume of a Protein Cavity Nuno Sousa Cerqueira (Thu Dec 10 2009 - 07:13:07 CST)
- About "Visualization and Analysis of CPMD data with VMD" tutorial Aurum Bai (Thu Dec 10 2009 - 02:29:22 CST)
- Fwd: paratool - parameter generation from gaussian log files Nuno Sousa Cerqueira (Thu Dec 10 2009 - 01:05:51 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault" Rob (Wed Dec 09 2009 - 22:24:16 CST)
- paratool - parameter generation from gaussian log files Yu Fang (Wed Dec 09 2009 - 22:17:57 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Thu Dec 10 2009 - 00:07:06 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Thu Dec 10 2009 - 05:08:03 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Fri Dec 11 2009 - 01:32:10 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Mon Dec 14 2009 - 05:40:47 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Mon Dec 14 2009 - 23:37:02 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Mon Dec 14 2009 - 17:41:06 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Thu Dec 10 2009 - 05:08:03 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Thu Dec 10 2009 - 00:07:06 CST)
- error in rmsd.tcl for tutorial TAE BUM LEE (Wed Dec 09 2009 - 16:37:42 CST)
- Counting number of water molecules Bernardo Sosa Padilla Araujo (Wed Dec 09 2009 - 16:30:13 CST)
- Re: A VMD script to emulate the Matlab "jet" colorscale John Stone (Wed Dec 09 2009 - 11:48:11 CST)
- A VMD script to emulate the Matlab "jet" colorscale John Stone (Tue Dec 08 2009 - 16:49:40 CST)
- Restraints on coarse grained model Francesco Pietra (Tue Dec 08 2009 - 13:23:59 CST)
- Broken bonds in trajectory due to pbc Jennifer Williams (Tue Dec 08 2009 - 05:41:07 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
- Re: Broken bonds in trajectory due to pbc Axel Kohlmeyer (Tue Dec 08 2009 - 16:32:01 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Wed Dec 09 2009 - 04:04:29 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Wed Dec 09 2009 - 04:14:34 CST)
- Re: Broken bonds in trajectory due to pbc Jennifer Williams (Wed Dec 09 2009 - 06:39:48 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (however: 1.8.6 works!) Rob (Tue Dec 08 2009 - 01:03:29 CST)
- vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Mon Dec 07 2009 - 21:25:11 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault John Stone (Mon Dec 07 2009 - 21:45:44 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Tue Dec 08 2009 - 08:05:26 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Fri Dec 11 2009 - 08:53:35 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Sun Dec 13 2009 - 18:33:35 CST)
- FW: VMD 1.8.7 build with VRPN 7.23 Mark Cunningham (Mon Dec 07 2009 - 14:09:59 CST)
- vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Mon Dec 07 2009 - 09:40:30 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Mon Dec 07 2009 - 14:43:51 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Tue Dec 08 2009 - 14:22:23 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Tue Dec 08 2009 - 14:44:06 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Wed Dec 09 2009 - 13:37:45 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Wed Dec 09 2009 - 13:53:18 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Wed Dec 09 2009 - 13:57:18 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Tue Dec 08 2009 - 14:22:23 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Mon Dec 07 2009 - 14:43:51 CST)
- cluster of particles Salvador H-V (Sun Dec 06 2009 - 20:00:39 CST)
- porcupine plots for PC1 Dawn (Sun Dec 06 2009 - 13:29:19 CST)
- Fwd: Failure with AutoPSF (PDB has x, y, z zero) Francesco Pietra (Sat Dec 05 2009 - 12:51:22 CST)
- Failure with AutoPSF (PDB has x, y, z zero) Francesco Pietra (Fri Dec 04 2009 - 12:35:12 CST)
- regarding generating movie jani sahil (Fri Dec 04 2009 - 02:49:19 CST)
- RMSD for individual residue for a tetarmer gurunath katagi (Fri Dec 04 2009 - 00:20:03 CST)
- Nucleic acid topology file for PSF generation Jim Parker (Thu Dec 03 2009 - 21:56:00 CST)
- desmond plugin Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:43:02 CST)
- desmond plugin Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:37:51 CST)
- in search of lipid files Francesco Pietra (Thu Dec 03 2009 - 16:11:43 CST)
- ccp4 in vmd pebblepeddle_at_gmail.com (Wed Dec 02 2009 - 21:55:58 CST)
- Drawing cylinder in VMD rainy908_at_yahoo.com (Wed Dec 02 2009 - 17:29:24 CST)
- CG lipid bilayer vmd 1.8.7 Francesco Pietra (Wed Dec 02 2009 - 12:13:53 CST)
- coloring by difference in beta factors cubellis_at_unina.it (Tue Dec 01 2009 - 06:25:28 CST)
- Cant start IED Thomas Steinbrecher (Tue Dec 01 2009 - 05:00:15 CST)
- building VMD is tricky -please help Rich Cook (Mon Nov 30 2009 - 17:49:23 CST)
- Re: building VMD is tricky -please help Dipesh Bhattarai (Mon Nov 30 2009 - 19:32:09 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 10:05:01 CST)
- Re: building VMD is tricky -please help Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 14:03:53 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 15:27:37 CST)
- Re: building VMD is tricky -please help Rich Cook (Tue Dec 01 2009 - 17:50:48 CST)
- Re: building VMD is tricky -please help Axel Kohlmeyer (Tue Dec 01 2009 - 18:31:54 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 19:51:37 CST)
- Re: building VMD is tricky -please help Rich Cook (Wed Dec 02 2009 - 13:26:42 CST)
- Re: building VMD is tricky -please help John Stone (Wed Dec 02 2009 - 13:39:53 CST)
- Re: building VMD is tricky -please help Rich Cook (Wed Dec 02 2009 - 15:14:03 CST)
- Re: building VMD is tricky -please help Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
- Survey: 3 minutes of your time Pieter van 't Hof (Mon Nov 30 2009 - 07:56:47 CST)
- generating .xsc file from .dcd Neelanjana Sengupta (Mon Nov 30 2009 - 04:19:43 CST)
- Polyhedra with two selections? Georg Spiekermann (Mon Nov 30 2009 - 04:01:12 CST)
- Color by position behavior JT (Sun Nov 29 2009 - 02:59:31 CST)
- error in rbcg-2007.par file BIN ZHANG (Fri Nov 27 2009 - 13:15:01 CST)
- desmond plug-in error Nuno Sousa Cerqueira (Thu Nov 26 2009 - 11:53:58 CST)
- Secondary structure with Timeline Florentina Tofoleanu (Thu Nov 26 2009 - 06:19:15 CST)
- Hydrogen bonds with different evaluations Florentina Tofoleanu (Thu Nov 26 2009 - 05:16:34 CST)
- Move molecule to the origin of coordinate system snoze pa (Wed Nov 25 2009 - 10:49:12 CST)
- GRID maps visualization problems Sergey Samsonov (Tue Nov 24 2009 - 07:50:51 CST)
- GRID maps visualization problems Sergey Samsonov (Tue Nov 24 2009 - 07:35:51 CST)
- aligning trajectories maria goranovic (Tue Nov 24 2009 - 04:22:54 CST)
- Using class UIVR Dipesh Bhattarai (Mon Nov 23 2009 - 10:59:57 CST)
- VMD 1.8.7 amd64 python libs? Tru Huynh (Mon Nov 23 2009 - 10:30:17 CST)
- Re: namd-l: Re: problems with CG protein-lipidbilayer-water system Francesco Pietra (Sun Nov 22 2009 - 15:32:18 CST)
- problems with CG protein-lipidbilayer-water system Francesco Pietra (Sat Nov 21 2009 - 12:00:54 CST)
- destroyed molecule sarah k (Sat Nov 21 2009 - 06:57:32 CST)
- coarse-grained solvate usage Francesco Pietra (Fri Nov 20 2009 - 05:12:35 CST)
- aquire coordinates from the points of the solvent representation Nuno Sousa Cerqueira (Thu Nov 19 2009 - 13:53:40 CST)
- solvate error Rebecca Alexander (Thu Nov 19 2009 - 11:48:42 CST)
- paratool problem sarah k (Wed Nov 18 2009 - 23:43:52 CST)
- Is it the bug of VMD1.87_partool? Aurum Bai (Wed Nov 18 2009 - 06:29:56 CST)
- xzy format and ResType Christine Horejs (Tue Nov 17 2009 - 14:03:01 CST)
- Holo-Bench with VMD and Flystick2 and/or Phantom Carsten Olbrich (Tue Nov 17 2009 - 12:03:56 CST)
- polymer bead spring model file format Ding, L. (Tue Nov 17 2009 - 11:15:50 CST)
- Changing Nvidia driver Christian Wohlschlager (Tue Nov 17 2009 - 02:46:23 CST)
- VMD video-projection in 3D Nicolas Floquet (Mon Nov 16 2009 - 08:08:49 CST)
- Error: failed on end of segment with RBCG Francesco Pietra (Sun Nov 15 2009 - 03:18:57 CST)
- Multiseq question Tomek Wlodarski (Sat Nov 14 2009 - 08:02:43 CST)
- parent molecule sarah k (Fri Nov 13 2009 - 23:59:28 CST)
- (no subject) Francesco Pietra (Fri Nov 13 2009 - 03:23:21 CST)
- version 1.8.7 for amd64 and cg tools Francesco Pietra (Thu Nov 12 2009 - 23:15:31 CST)
- PBCTools-problem getting unitcell parameters A D (Thu Nov 12 2009 - 19:40:31 CST)
- problems displaying newcartoon representation Robert Meklemburg (Thu Nov 12 2009 - 11:17:19 CST)
- Stop using directory from previous session J. Rui Rodrigues (Wed Nov 11 2009 - 10:54:01 CST)
- vmd bug in ubuntu 9.10 ChoiHeeSung (Wed Nov 11 2009 - 10:53:04 CST)
- bad_alloc error Gustavo Gust (Wed Nov 11 2009 - 09:04:34 CST)
- paratool and fatal error sarah k (Tue Nov 10 2009 - 23:27:33 CST)
- Problem with exit button Nuno Sousa Cerqueira (Tue Nov 10 2009 - 04:55:24 CST)
- CG Builder Francesco Pietra (Mon Nov 09 2009 - 14:06:44 CST)
- plugin for reading (and writing) trajectories with a varying number of atoms Axel Kohlmeyer (Fri Nov 06 2009 - 14:51:02 CST)
- Question about Keyboaerd events send from other PC Christian Wohlschlager (Thu Nov 05 2009 - 02:29:36 CST)
- rmsd calculation and plot sarah k (Tue Nov 03 2009 - 23:18:29 CST)
- radius of gyration units Bernardo Sosa Padilla Araujo (Tue Nov 03 2009 - 15:08:36 CST)
- Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). Bob Johnson (Tue Nov 03 2009 - 14:49:29 CST)
- Control of aminoacid ionization in VMD Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
- VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Tue Nov 03 2009 - 04:17:59 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
- Re: VMD autopsfgen and Mg2+ sarah k (Wed Nov 04 2009 - 23:47:20 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 20:02:41 CST)
- Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Fri Nov 06 2009 - 03:58:19 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Fri Nov 06 2009 - 09:55:29 CST)
- Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Mon Nov 09 2009 - 02:46:52 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Fri Nov 06 2009 - 19:23:54 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Tue Nov 10 2009 - 23:24:02 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 09:03:44 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
- running under Shell using VMD Nuno Sousa Cerqueira (Tue Nov 03 2009 - 02:29:30 CST)
- memory issues Paymon Pirzadeh (Mon Nov 02 2009 - 12:02:14 CST)
- Using Tcl functions in a C-plugin Olaf Lenz (Mon Nov 02 2009 - 07:29:24 CST)
- movie rendering Liang, Linus H. (Mon Nov 02 2009 - 07:08:35 CST)
- dll by c++ cannot be recognized by VMD tk console ? vmd_chcwaaa (Sun Nov 01 2009 - 01:32:42 CDT)
- full version OEM soft chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 23:14:25 CDT)
- Downloadable version chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 02:51:04 CDT)
- RBCG bead diameter Christine Horejs (Wed Oct 28 2009 - 11:54:50 CDT)
- abnormal water surface after nvt and npt for POPC membrane pxq 庞雪芹 (Tue Oct 27 2009 - 19:57:58 CDT)
- Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:22:03 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:45:16 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:47:55 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:56:51 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Axel Kohlmeyer (Tue Oct 27 2009 - 13:18:17 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Roman Petrenko (Tue Oct 27 2009 - 15:13:10 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
- lammpstrj file as pdb Christine Horejs (Tue Oct 27 2009 - 11:50:06 CDT)
- Tachyon Rendering daniel aguayo (Tue Oct 27 2009 - 10:27:52 CDT)
- RBCG Model Katherine Parra (Tue Oct 27 2009 - 09:19:55 CDT)
- order parameters for long lipids Raul Araya (Tue Oct 27 2009 - 08:47:38 CDT)
- pbwithin and within differences Gustavo Gust (Tue Oct 27 2009 - 06:48:51 CDT)
- Solvate-GUI Problem: Collapses Solvent to Origin Joshua Adelman (Mon Oct 26 2009 - 20:03:37 CDT)
- using NAMD with SPC water politr_at_huji.ac.il (Mon Oct 26 2009 - 07:48:26 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:08:08 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:24:19 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:42:13 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:54:56 CDT)
- Re: using NAMD with SPC water politr_at_huji.ac.il (Tue Oct 27 2009 - 11:12:21 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Sat Oct 31 2009 - 14:23:13 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
- unparameterized residue sarah k (Sun Oct 25 2009 - 02:24:21 CDT)
- VMD and Intel X3100 GPU Mohd Farid Ismail (Sat Oct 24 2009 - 16:27:38 CDT)
- Loading trajectory into Multiseq stephane acoca (Fri Oct 23 2009 - 18:07:02 CDT)
- Selections based on "bonded to" Schmidt, Mike (Fri Oct 23 2009 - 10:56:00 CDT)
- Bugs ? Representation window does not update new material TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
- Cuda an a cluster ? Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
- Problem with vmd and ssh -X Thomas Lemmin (Thu Oct 22 2009 - 02:51:44 CDT)
- Input File Format Arian Arian (Wed Oct 21 2009 - 14:03:01 CDT)
- questions Umesh Ghoshdastider (Wed Oct 21 2009 - 11:56:24 CDT)
- bond connectivity not displayed in VMD Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
- Atom sorting according to resid andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
- Direct manipulation of the camera poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 00:21:57 CDT)
- X server is not capable of displaying double RGB images with a Z buffer Ma.Busch (Tue Oct 20 2009 - 04:09:40 CDT)
- Translating an atom along a specific direction and saving the pdb files priyodorshi satpati (Tue Oct 20 2009 - 04:08:12 CDT)
- glycerol Ay艧e 脰zlem Aykut (Tue Oct 20 2009 - 03:13:57 CDT)
- NAMD can't malloc() error Ronald Salesky (Mon Oct 19 2009 - 12:44:55 CDT)
- Arbitrary values of isosurface aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
- paratool: unable to load optimized geometry Stanislaw Bobritsky (Mon Oct 19 2009 - 03:21:33 CDT)
- Calculate Free Volume? YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
- Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) Alberto Sergio Garay (Fri Oct 16 2009 - 17:48:04 CDT)
- MDFF sim Problem Joshua Adelman (Fri Oct 16 2009 - 16:20:03 CDT)
- Re: Align membrane Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
- Align membrane Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
- vmd mailing list Roman Petrenko (Thu Oct 15 2009 - 17:14:10 CDT)
- Re: Water Sphere Solvation Peter Murphy (Tue Oct 13 2009 - 16:54:45 CDT)
- Problems with selecting atoms for representations Joseph Bylund (Tue Oct 13 2009 - 10:39:52 CDT)
- writing gromacs .trr format with nonorthorhomic cells Matt Watkins (Tue Oct 13 2009 - 07:05:27 CDT)
- FW: Disulfide bonds Andres Morales N (Tue Oct 13 2009 - 01:02:30 CDT)
- Disulfude bonds Andres Morales N (Tue Oct 13 2009 - 01:00:39 CDT)
- colour residues Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
- covalently bonded atoms politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
- catdcd Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
- format of pdb file Christine Horejs (Mon Oct 12 2009 - 09:04:51 CDT)
- Load struture form memory Nuno Sousa Cerqueira (Mon Oct 12 2009 - 06:06:47 CDT)
- Lipid Membrane Ale Gomez (Sun Oct 11 2009 - 22:58:08 CDT)
- mac tk widgets Nuno Sousa Cerqueira (Sat Oct 10 2009 - 21:13:15 CDT)
- VMD 1.8.7 CUDA on Mac OS X 10.6.1 Mengjuei Hsieh (Sat Oct 10 2009 - 18:23:52 CDT)
- Parameter file for protein siloxane interactions Nilesh Ingle (Thu Oct 08 2009 - 21:47:14 CDT)
- Problem using psfgen and carbohydrate charmm parameters. Alexandre Suman de Araujo (Thu Oct 08 2009 - 16:19:26 CDT)
- how to display the periodic box in VMD Lan He (Wed Oct 07 2009 - 17:51:41 CDT)
- Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 10:46:37 CDT)
- RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 13:29:10 CDT)
- RE: how to display the periodic box in VMD Axel Kohlmeyer (Thu Oct 08 2009 - 14:30:27 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Fri Oct 09 2009 - 01:49:07 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- CatDCD Desmond Support andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
- How to generate a monolayer in VMD Nilesh Ingle (Mon Oct 05 2009 - 18:55:37 CDT)
- How to translate my diffused protein back to COM? A D (Mon Oct 05 2009 - 18:20:15 CDT)
- Tracking atoms automatically Nanako Takahashi (Mon Oct 05 2009 - 11:52:37 CDT)
- distance of two center of mass Nicola Giacche' (Mon Oct 05 2009 - 04:36:37 CDT)
- Breaking a trajectory into separate files with tcl Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
- R.E.D.-III.3 tools release - q4md-forcefieldtools.org FyD (Sun Oct 04 2009 - 09:37:06 CDT)
- problem with psfgen Q=C5=CC=C1=CC=CF=D7_=E9=CC=D8=D1?= (Sat Oct 03 2009 - 05:35:24 CDT)
- Problems with Stride Martin K. Jones (Fri Oct 02 2009 - 12:18:41 CDT)
- Rx for VMD crashing PC? Ronald Salesky (Thu Oct 01 2009 - 21:57:00 CDT)
- how to load an external file to user field Sun Yicheng (Thu Oct 01 2009 - 10:28:39 CDT)
- multiseq and fasta files from pdb Vlad Cojocaru (Thu Oct 01 2009 - 04:26:01 CDT)
- Reading output of quantum packages and plotting orbitals Ignacio Fern醤dez Galv醤 (Wed Sep 30 2009 - 11:57:35 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fern醤dez Galv醤 (Fri Oct 02 2009 - 03:01:36 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Fri Oct 02 2009 - 11:52:09 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fern醤dez Galv醤 (Fri Oct 23 2009 - 03:29:22 CDT)
- Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 08:39:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fern醤dez Galv醤 (Fri Oct 23 2009 - 09:29:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 10:21:07 CDT)
- Re: Reading output of quantum packages and plotting orbitals John Stone (Fri Oct 23 2009 - 09:49:38 CDT)
- Re: Reading output of quantum packages and plotting orbitals John Stone (Mon Oct 05 2009 - 21:10:49 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fern醤dez Galv醤 (Fri Oct 02 2009 - 03:01:36 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- namd2.7b1, tip4p, and dummies Edward Lyman (Wed Sep 30 2009 - 01:36:06 CDT)
- trace cartoon etc displaying incompletely after alignment Rahul Mahajan (Tue Sep 29 2009 - 21:23:53 CDT)
- Representation problem Ahmet Bakan (Mon Sep 28 2009 - 16:22:36 CDT)
- model protein chain not displayed properly Elias Ahadi (Mon Sep 28 2009 - 13:38:32 CDT)
- H_Bonds Katherine Parra (Mon Sep 28 2009 - 12:53:21 CDT)
- Return value of a vector Stephanie Held (Mon Sep 28 2009 - 08:39:27 CDT)
- user field Sun Yicheng (Mon Sep 28 2009 - 08:36:34 CDT)
- text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 04:57:16 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
- Re: text timer in vmd animations John Stone (Mon Sep 28 2009 - 10:07:31 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:19:41 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:53:04 CDT)
- Re: text timer in vmd animations John Stone (Mon Oct 05 2009 - 22:22:10 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 10:40:38 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
- Paratool: QMTool::bondlist error message Sebastian Stolzenberg (Fri Sep 25 2009 - 21:53:27 CDT)
- Overlaying 2 structures madura_at_duq.edu (Fri Sep 25 2009 - 15:55:05 CDT)
- ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 05:40:17 CDT)
- Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 07:41:11 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 07:55:47 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 09:11:49 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:25:55 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 10:02:52 CDT)
- Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 11:03:47 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 11:55:11 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 12:16:30 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Frame creation Andreas Wagenmann (Thu Sep 24 2009 - 09:28:50 CDT)
- problem in reading .nc NETCDF FILE Genform GK (Wed Sep 23 2009 - 23:02:10 CDT)
- Web-based Flash/Quicktime 3-D VMD/Tachyon renderings of PDB structures John Stone (Wed Sep 23 2009 - 15:45:30 CDT)
- double bonds Taufik Al-Sarraj (Wed Sep 23 2009 - 13:13:12 CDT)
- trajectory analysis Barry Bickmore (Wed Sep 23 2009 - 11:39:08 CDT)
- "Lines" representation does not show Martin Lep鬼k (Wed Sep 23 2009 - 10:49:33 CDT)
- Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- Re: "Lines" representation does not show John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
- Re: "Lines" representation does not show:remote Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
- Re: "Lines" representation does not show John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- atom selection Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
- [carlos.simmerling@gmail.com: ACS awards application announcements] John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
- Resize window from TCL Ondrej Marsalek (Mon Sep 21 2009 - 11:51:46 CDT)
- automated loading Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
- problem with density map obtained by volmap Ana C閘ia Vila Verde (Sun Sep 20 2009 - 08:01:12 CDT)
- Velocity Auto Correlation Goutham (Fri Sep 18 2009 - 14:53:42 CDT)
- water molecules around proteins Katherine Parra (Fri Sep 18 2009 - 12:04:04 CDT)
- Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" Jim Parker (Thu Sep 17 2009 - 19:33:51 CDT)
- Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" John Stone (Thu Sep 17 2009 - 21:34:36 CDT)
- Installing Multiseq updates Jeremias Corradi (Thu Sep 17 2009 - 08:42:51 CDT)
- Average structure and NamdEnergy Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
- Install VMD with plugins to NAMD Jim Parker (Wed Sep 16 2009 - 21:44:31 CDT)
- DLP Stereo and VR toolkit integration with vmd Simon Su (Wed Sep 16 2009 - 16:04:25 CDT)
- Average structure and NamdEnergy Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
- Reading new amber prmtop formats. Crowley, Michael (Wed Sep 16 2009 - 12:21:42 CDT)
- Re: segid WT100 is longer than 4 characters allowed by psf format Ramya Gamini (Wed Sep 16 2009 - 08:01:57 CDT)
- segid WT100 is longer than 4 characters allowed by psf format Luca Gelisio (Wed Sep 16 2009 - 03:34:16 CDT)
- PSF for AMBER top + crd files Goutham (Tue Sep 15 2009 - 16:35:23 CDT)
- rotate dihedral angle Jorgen Simonsen (Mon Sep 14 2009 - 14:08:21 CDT)
- CGTools error: atom select: cannot parse selection text... wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
- Segmentation fault on linux Fedora 11 Rob (Sun Sep 13 2009 - 19:16:28 CDT)
- VMD and NetCDF under Windows Vista 32bit Jan F. Totz (Sun Sep 13 2009 - 01:57:02 CDT)
- get coordinates Andres Morales N (Sat Sep 12 2009 - 12:05:35 CDT)
- "measure fit" problem Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
- Mistakes in the 1.8.7 User guide Myunggi Yi (Wed Sep 09 2009 - 10:18:40 CDT)
- psf for CNT? Ronald Salesky (Wed Sep 09 2009 - 09:55:05 CDT)
- Question about PSF generation NAMITA BHADRA (Tue Sep 08 2009 - 23:01:53 CDT)
- catdcd in Windows Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
- (no subject) Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
- How to select a hetatom while get rid of N-term ACE in atomselect Sujata Sovani (Tue Sep 08 2009 - 17:47:43 CDT)
- Main menu not compiled? Pieter van 't Hof (Fri Sep 04 2009 - 09:00:56 CDT)
- RE: namd-l: Re: rmsd matrix Andres Morales N (Thu Sep 03 2009 - 15:00:30 CDT)
- rmsd matrix Andres Morales N (Thu Sep 03 2009 - 07:45:06 CDT)
- Bond representation of coarse grained molecules BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
- Re: Bond representation of coarse grained molecules John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
- VMD on Suse 11.1 w/ NVIDIA dies. Bishop, Thomas C (Fri Sep 04 2009 - 17:52:35 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Sat Sep 05 2009 - 14:33:34 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Tue Sep 08 2009 - 10:57:12 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Tue Sep 08 2009 - 16:55:55 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Wed Sep 09 2009 - 09:17:55 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 16:53:19 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Thu Sep 10 2009 - 17:24:03 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 17:44:05 CDT)
- Re: Bond representation of coarse grained molecules Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
- Script error Negar Ashari Astani (Tue Sep 01 2009 - 11:58:32 CDT)
- VMD on MacOSX 10.6 Snow Leopard: fast Christoph Weber (Mon Aug 31 2009 - 18:31:11 CDT)
- 3D pdf problem Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
- superimpose two proteins with different residue numbers Soumya Lipsa Rath (Mon Aug 31 2009 - 02:55:13 CDT)
- VMD, MultiSeq, STAMP Damian Loska (Sun Aug 30 2009 - 11:42:14 CDT)
- User field Urahata (Fri Aug 28 2009 - 10:40:43 CDT)
- viewing MOs Dan thomas Major (Fri Aug 28 2009 - 09:47:34 CDT)
- superimposing proteins with non-similar coordinates Mark M Huntress (Wed Aug 26 2009 - 16:17:41 CDT)
- Re: superimposing proteins with non-similar coordinates Schreiner Eduard (Wed Aug 26 2009 - 16:33:39 CDT)
- Re: superimposing proteins with non-similar coordinates John Stone (Wed Aug 26 2009 - 16:31:46 CDT)
- Re: superimposing proteins with non-similar coordinates Christopher MacDermaid (Wed Aug 26 2009 - 17:17:34 CDT)
- rotating ligand Steve Seibold (Wed Aug 26 2009 - 14:58:19 CDT)
- drawing waterbox Narender Singh Maan (Wed Aug 26 2009 - 09:35:56 CDT)
- Bond in pbc condition Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
- selection for polar hydrogens only poker_at_physics.usyd.edu.au (Tue Aug 25 2009 - 22:13:26 CDT)
- tinkerxyz Mark M Huntress (Tue Aug 25 2009 - 19:21:48 CDT)
- problem with 1.8.7 installation Barbault Florent (Tue Aug 25 2009 - 04:50:41 CDT)
- Mac and cmd line Jorgen Simonsen (Mon Aug 24 2009 - 11:58:16 CDT)
- Moving Molecule Steve Seibold (Mon Aug 24 2009 - 10:37:42 CDT)
- using VMD 1.8.7 on a Mac Carolyn Phillips (Sun Aug 23 2009 - 15:13:40 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Mon Aug 24 2009 - 15:42:49 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 18:24:36 CDT)
- Re: using VMD 1.8.7 on a Mac Joshua D. Moore (Mon Aug 24 2009 - 21:49:10 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Tue Aug 25 2009 - 10:34:02 CDT)
- Re: using VMD 1.8.7 on a Mac Robert Brunner (Tue Aug 25 2009 - 12:00:11 CDT)
- Re: using VMD 1.8.7 on a Mac daniel aguayo (Tue Aug 25 2009 - 12:53:02 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Eric H. Lee (Fri Aug 21 2009 - 17:13:21 CDT)
- NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Carmen Valladares (Fri Aug 21 2009 - 16:26:04 CDT)
- VMD: 1.8.7 win32 opengl runtime error Guanglei Cui (Fri Aug 21 2009 - 09:14:56 CDT)
- Force extension from SMD log file snoze pa (Thu Aug 20 2009 - 17:25:20 CDT)
- Color bar Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
- Pyhton Mode Peyman Yamin (Thu Aug 20 2009 - 04:49:33 CDT)
- Mutator: Losing Chromophore Carmen Valladares (Wed Aug 19 2009 - 19:14:57 CDT)
- Render command not executed Nicolas SAPAY (Wed Aug 19 2009 - 02:22:18 CDT)
- VMD Tracking VRPN Christian Wohlschlager (Wed Aug 19 2009 - 02:01:49 CDT)
- Rendering polyhedra with POV-Ray Nicolas SAPAY (Tue Aug 18 2009 - 09:53:10 CDT)
- positioning of a compound Steve Seibold (Wed Aug 12 2009 - 14:48:23 CDT)
- Periodic Bonding Liang, Linus H. (Wed Aug 12 2009 - 08:44:19 CDT)
- Turn off the autobond feature in VMD Liang, Linus H. (Wed Aug 12 2009 - 08:27:55 CDT)
- VMD Periodic cells Florentina Tofoleanu (Wed Aug 12 2009 - 07:03:53 CDT)
- CUDA Support Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
- can we control the number and distribution of solvate molecular pxq 庞雪芹 (Wed Aug 12 2009 - 03:02:33 CDT)
- Re: namd-l: how to write a command to close vmd in shell script? Benjamin Bouvier (Mon Aug 10 2009 - 03:07:38 CDT)
- HRTEM Joshua D. Moore (Fri Aug 07 2009 - 02:20:45 CDT)
- How to compile the source of VMD1.8.7 on linux system Aurum Bai (Fri Aug 07 2009 - 00:10:40 CDT)
- NEW New Christian Wohlschlager (Thu Aug 06 2009 - 07:44:37 CDT)
- Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
- Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- clusters visualization with colours Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
- Re: clusters visualization with colours John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
- Re: Cionize on mac cuda John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
- Re: Cionize on mac cuda daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
- Re: Cionize on mac cuda John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
- Re: Cionize on mac cuda daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
- Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- Announce: VMD 1.8.7 released John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
- "mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val" Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
- Why the win_version of vmd1.86 can not change to python interpreter? Aurum Bai (Sat Aug 01 2009 - 08:21:06 CDT)
- vmd Linux 64 Christian Wohlschlager (Fri Jul 31 2009 - 03:29:04 CDT)
- visualization problem Srikanth Dhondi (Thu Jul 30 2009 - 21:58:27 CDT)
- Building polymer psf from monomer topology Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
- NAMDEnergy Plugin Andres Morales N (Tue Jul 28 2009 - 00:34:43 CDT)
- removed all proton in protein with vmd albert albert (Mon Jul 27 2009 - 01:40:34 CDT)
- PDB COORDINATES Edward P. Manning (Sun Jul 26 2009 - 19:08:28 CDT)
- Stripping out H20 Jehanzeb Hameed (Sun Jul 26 2009 - 18:24:33 CDT)
- File to benchmark a new GPU system luc Renambot (Sun Jul 26 2009 - 16:20:28 CDT)
- order parameter from trajectory Roman Petrenko (Fri Jul 24 2009 - 17:08:50 CDT)
- Lovyeou gumbart_at_ks.uiuc.edu (Fri Jul 24 2009 - 09:31:56 CDT)
- time-averaged RMSD per residue Dawn (Fri Jul 24 2009 - 08:06:08 CDT)
- question about atomselect and periodic condition Linchen Gong (Fri Jul 24 2009 - 05:44:41 CDT)
- Hydrogen Bonding energy Goutham (Thu Jul 23 2009 - 20:56:52 CDT)
- Loevyou gumbart_at_ks.uiuc.edu (Thu Jul 23 2009 - 16:55:17 CDT)
- stereo anaglyph Roman Petrenko (Thu Jul 23 2009 - 16:16:07 CDT)
- TkConsole not working Ziemys, Arturas (Thu Jul 23 2009 - 14:45:20 CDT)
- drawing bond for coarse grained model Sunjoo Lee (Thu Jul 23 2009 - 13:25:46 CDT)
- Save State Fails Carmen Valladares (Tue Jul 21 2009 - 18:57:00 CDT)
- could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Disable the set output Nicolas SAPAY (Thu Jul 23 2009 - 05:15:24 CDT)
- Re: Disable the set output Axel Kohlmeyer (Thu Jul 23 2009 - 07:45:34 CDT)
- Re: Disable the set output Nicolas Sapay (Thu Jul 23 2009 - 09:28:13 CDT)
- Re: Disable the set output Thomas C. Bishop (Thu Jul 23 2009 - 09:52:15 CDT)
- Re: Disable the set output Leonardo Trabuco (Sat Jul 25 2009 - 10:54:53 CDT)
- Re: Re: could not visualize DCD file downloaded from VMD website Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- insert a protein into a membrane Lixia Jin Day (Tue Jul 21 2009 - 13:41:21 CDT)
- of diet pills, like a racing heart or queasy stomach ltrabuco_at_ks.uiuc.edu (Tue Jul 21 2009 - 09:47:48 CDT)
- error using Molecule.save() (vmd python) Michael Kreim (Tue Jul 21 2009 - 06:49:44 CDT)
- IMD interface for VASP Michael Robbert (Mon Jul 20 2009 - 17:54:36 CDT)
- need convert when using VMD to make a movie under Mac Yongmei Pan (Mon Jul 20 2009 - 17:49:29 CDT)
- VMD on laptop with ATI Radeon 3650 Ramon Rocha (Mon Jul 20 2009 - 16:00:40 CDT)
- Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:04:25 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:43:38 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 13:16:31 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 15:43:56 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 16:19:05 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 10:39:36 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 11:23:34 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 12:21:14 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 12:29:49 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Thu Jul 23 2009 - 12:49:24 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 16:42:37 CDT)
- Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 08:46:05 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Axel Kohlmeyer (Fri Jul 24 2009 - 09:22:09 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 13:24:45 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 11:36:28 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Re PSF file generation karthigeyan karthigeyantp (Mon Jul 20 2009 - 07:34:51 CDT)
- VMD 1.8.7 installation problem Ajeeta kaushiki (Mon Jul 20 2009 - 06:55:41 CDT)
- Problem With Psfgen again avl211_at_lehigh.edu (Fri Jul 17 2009 - 13:53:49 CDT)
- error after changing of PYTHONPATH variable Michael Kreim (Fri Jul 17 2009 - 07:12:52 CDT)
- File conversion for from Amber to Charmm Yogesh Aher (Fri Jul 17 2009 - 04:34:55 CDT)
- Problems with psfgen avl211_at_lehigh.edu (Thu Jul 16 2009 - 16:06:31 CDT)
- algorithm for command *within* BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
- ied and gypython gurunath katagi (Thu Jul 16 2009 - 02:16:21 CDT)
- A problem on PBC yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
- HETATM records are written as ATOM Thomas Evangelidis (Wed Jul 15 2009 - 16:58:27 CDT)
- Natural WeightL0SS Solution ltrabuco_at_ks.uiuc.edu (Wed Jul 15 2009 - 17:35:35 CDT)
- Can I build a structure by VMD? Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
- .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
- python and vmd Jorgen Simonsen (Wed Jul 15 2009 - 04:23:12 CDT)
- scan interleaved stereo on Zalman M220W monitor Sinan Arslan (Tue Jul 14 2009 - 13:11:39 CDT)
- molecule jumps from one site to the other? uu zhu (Mon Jul 13 2009 - 21:11:52 CDT)
- getting other variables out of LAMMPS ascii dump files Dan Lussier (Mon Jul 13 2009 - 13:44:23 CDT)
- Be someone whom you have never been before with DrMaxMan ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
- Problem: I got a runtime error "CthCreate failed to create fiber!". Chuck (Sun Jul 12 2009 - 03:49:44 CDT)
- Need Guidance with pbctools Angelo Rossi (Sat Jul 11 2009 - 13:47:11 CDT)
- residue based CG model Xiang Yu (Fri Jul 10 2009 - 09:20:42 CDT)
- measure rmsf Alison Grinthal (Fri Jul 10 2009 - 08:31:26 CDT)
- A problem on SASA measure yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
- Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:00:29 CDT)
- Re: make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 11:14:15 CDT)
- Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:27:08 CDT)
- Re: make movie w/ VMD in SUSE environment Axel Kohlmeyer (Thu Jul 16 2009 - 11:40:03 CDT)
- make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- Need GAMESS logfiles for testing VMD's new QM interface saam (Thu Jul 09 2009 - 11:58:08 CDT)
- How to make a selection in atomselect using an element in a list? maria goranovic (Wed Jul 08 2009 - 10:39:39 CDT)
- LES problem Irene Newhouse (Tue Jul 07 2009 - 00:25:20 CDT)
- Make sure girls notice your package petefred_at_ks.uiuc.edu (Sat Jul 04 2009 - 22:12:43 CDT)
- NAMDenergy: problems on changing VMD version/platform Neelanjana Sengupta (Sat Jul 04 2009 - 11:17:44 CDT)
- GPL compatible PluginMgr/vmddlopen Roland Schulz (Sat Jul 04 2009 - 08:13:37 CDT)
- Hardware for NAMD / VMD machine Olve Peersen (Fri Jul 03 2009 - 01:26:11 CDT)
- Be the largest man around petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
- Manunlly Assign Secondary Structure (May Not Be Realistic) John C. H. Chao (Thu Jul 02 2009 - 06:00:07 CDT)
- superimposing proteins based on a few residues Irene Newhouse (Wed Jul 01 2009 - 15:59:33 CDT)
- Some VMD questions Steve Jensen (Tue Jun 30 2009 - 12:27:01 CDT)
- Coloring atoms by a general scalar Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
- Funny tcl/tk script behavior.... Alberto Sergio Garay (Tue Jun 30 2009 - 08:02:57 CDT)
- atom name can not exceed four characters in pdb and psf? accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
- Packed with Antioxidants . Acai Berry. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 21:30:17 CDT)
- Oprah certified wieght loss solution Acai.Berri. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 19:29:14 CDT)
- GPGPU Programming summer school at University of Tennessee, Aug 10-14. Axel Kohlmeyer (Mon Jun 29 2009 - 14:44:15 CDT)
- running vmd on computer node BIN ZHANG (Mon Jun 29 2009 - 12:55:08 CDT)
- selection update kumar prashanth (Fri Jun 26 2009 - 08:03:21 CDT)
- Problem using pbc wrap..... Alberto Sergio Garay (Fri Jun 26 2009 - 07:13:44 CDT)
- Curious about analytical capabilities of VMD Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- constant region selection for animation Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
- Re: regarding positioning of protein molecule Ramya Gamini (Thu Jun 25 2009 - 01:48:07 CDT)
- "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
- Multimodel PDB files with Different Models? Kevin Wu (Wed Jun 24 2009 - 21:05:30 CDT)
- residue index problem Jianhui Tian (Wed Jun 24 2009 - 15:51:54 CDT)
- trace the distance between center of mass of one certain residue and the other Naiyin Yu (Wed Jun 24 2009 - 14:59:14 CDT)
- Rejecting plugin... Gustavo Seabra (Wed Jun 24 2009 - 14:04:25 CDT)
- vmd error message in Fedora 11 snoze pa (Wed Jun 24 2009 - 11:04:15 CDT)
- Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
- vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Wed Jun 24 2009 - 15:24:32 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? Olaf Lenz (Thu Jun 25 2009 - 00:52:39 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Thu Jun 25 2009 - 01:06:02 CDT)
- vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
- Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
- bigdcd v3 available. testers needed. Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
- joystick, win32 simple interface Biff Forbush (Tue Jun 23 2009 - 18:32:57 CDT)
- VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card Baumert, Uwe Dr.rer.nat. (Mon Jun 22 2009 - 04:18:54 CDT)
- Plugins: plz add one more conversion to unit_conversion.h Rob (Sun Jun 21 2009 - 21:00:57 CDT)
- tag heuer rep watch for you; Forest Jefferson (Sat Jun 20 2009 - 05:44:49 CDT)
- porsche design is your style; Fletcher Quick (Thu Jun 18 2009 - 14:18:17 CDT)
- transformation matrix Thomas Evangelidis (Thu Jun 18 2009 - 02:55:52 CDT)
- "Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Thu Jun 18 2009 - 02:27:08 CDT)
- Wrong coordinates using guesscoord in psfgen - lipids poker_at_physics.usyd.edu.au (Wed Jun 17 2009 - 02:30:55 CDT)
- movie maker Alison Grinthal (Tue Jun 16 2009 - 09:44:48 CDT)
- Molscripts Tomek Wlodarski (Tue Jun 16 2009 - 08:54:22 CDT)
- using atomselect to write a set of atoms and not some residue whose residue numbers are in a list maria goranovic (Mon Jun 15 2009 - 10:31:26 CDT)
- "Save coordinates..." silently overwrites existing files... Rob (Mon Jun 15 2009 - 10:25:10 CDT)
- Memory allocation problem kumar prashanth (Mon Jun 15 2009 - 04:06:49 CDT)
- psfgen: auto none not working Ruchi Sachdeva (Mon Jun 15 2009 - 03:57:25 CDT)
- ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Mon Jun 15 2009 - 01:32:28 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 03:27:28 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 21:23:22 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Wed Jun 17 2009 - 10:59:23 CDT)
- vmdnumpy for IED... Cihan Aydin (Sun Jun 14 2009 - 17:42:36 CDT)
- Ho to save exactly the screen structure? V韈tor (Sun Jun 14 2009 - 15:35:55 CDT)
- Tcl commands and X11 craig bullington (Fri Jun 12 2009 - 11:48:37 CDT)
- VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 09:48:29 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:36:49 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:45:37 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 11:17:22 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 11:33:47 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Wed Jul 15 2009 - 13:48:13 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
- FW: Unable to render electrostatic potential cube files with most non-HF densities Whiteside, Alexander (Thu Jun 11 2009 - 08:39:21 CDT)
- vmd cannot be launched after successful installation Stefano Meliga (Wed Jun 10 2009 - 10:58:15 CDT)
- Transparency settings Bjoern Olausson (Wed Jun 10 2009 - 09:13:13 CDT)
- NAMDEnergy Andres Morales N (Wed Jun 10 2009 - 08:59:51 CDT)
- plugin: can I load volumetric data as frames (i.e. timesteps)? Rob (Wed Jun 10 2009 - 03:11:34 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 08:48:26 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 09:49:59 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:04:09 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:06:53 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:24:26 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:36:41 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:44:13 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 09:43:20 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 10:09:03 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 11:12:17 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 11:28:26 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Axel Kohlmeyer (Wed Jun 10 2009 - 08:16:58 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- bonds not created as desired Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
- Re: Cannot load file for SASA analysis Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
- MSMS installation craig bullington (Mon Jun 08 2009 - 14:27:57 CDT)
- crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
- Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
- Re: Re: crystal eyes vmd John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- atom selection Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
- NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:24:33 CDT)
- NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:23:35 CDT)
- Building LPS membrane dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
- Vector corresponding to the long axis Navendu bhatnagar (Fri Jun 05 2009 - 17:26:16 CDT)
- disulphide bond formation gurunath katagi (Fri Jun 05 2009 - 10:14:11 CDT)
- debugging tool for atomselect Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
- Memory Problem with tcl/tk script...(Solved!) Alberto Sergio Garay (Thu Jun 04 2009 - 07:08:19 CDT)
- Energy Andres Morales N (Wed Jun 03 2009 - 21:50:41 CDT)
- Memory Problem with tcl/tk script...(3) Alberto Sergio Garay (Wed Jun 03 2009 - 14:17:07 CDT)
- Memory Problem with tcl/tk script...(2) Alberto Sergio Garay (Wed Jun 03 2009 - 12:54:53 CDT)
- vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:31:26 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 11:15:39 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 11:42:38 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 14:01:12 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Wed Jun 03 2009 - 02:36:51 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file Axel Kohlmeyer (Wed Jun 03 2009 - 08:16:06 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Wed Jun 03 2009 - 14:05:48 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 05 2009 - 11:04:08 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Mon Jun 08 2009 - 16:15:15 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 09:48:41 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 11:26:01 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 08:59:54 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 21:30:22 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file Marius Retegan (Fri Jun 12 2009 - 08:47:39 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 12 2009 - 09:44:29 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Fri Jun 12 2009 - 11:17:35 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
- APBS error : Cannot read output file Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
- VMD HOLE Result Hyundeok Song (Tue Jun 02 2009 - 08:49:20 CDT)
- Memory Problem with tcl/tk script... Alberto Sergio Garay (Tue Jun 02 2009 - 07:25:16 CDT)
- adding atoms to empty molecules Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
- VMD 1.8.7 Beta 5 -- Possible bug when typing in the VMD menu boxes. JT (Mon Jun 01 2009 - 17:29:07 CDT)
- VMD 1.8.7 beta 5 posted for download John Stone (Mon Jun 01 2009 - 16:11:31 CDT)
- Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
- Linking to molfile_plugin libraries David Tanner (Fri May 29 2009 - 13:02:59 CDT)
- Macbook and VMD Tk windows madura_at_duq.edu (Fri May 29 2009 - 06:49:08 CDT)
- VMD crash snoze pa (Thu May 28 2009 - 14:45:10 CDT)
- Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
- problem with dispdev KIRTANA S (Wed May 27 2009 - 15:59:41 CDT)
- main window missing? BIN ZHANG (Wed May 27 2009 - 15:17:40 CDT)
- Need testers for VMD/Tachyon volumetric coloring feature :-) John Stone (Wed May 27 2009 - 14:37:59 CDT)
- Angles in psf file KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
- Re: new problem John Stone (Tue May 26 2009 - 11:05:07 CDT)
- Heat capacity zizi moradi (Sun May 24 2009 - 16:39:45 CDT)
- Isosurface and Fieldlines Not rendered in colour Burak Cankurtaran (Tue May 26 2009 - 00:15:44 CDT)
- Plugin: molfile_plugin_t filename_extension; problem and bug... Rob (Sun May 24 2009 - 22:39:33 CDT)
- VMD crashes in VolumeSlice representation Suman Chakrabarty (Sun May 24 2009 - 13:09:10 CDT)
- Problem in loading data Jae Hyun Park (Sun May 24 2009 - 10:38:24 CDT)
- "Determine file type" list is far too long... Rob (Sun May 24 2009 - 04:45:30 CDT)
- solvent accessible surface area zizi moradi (Sat May 23 2009 - 13:11:19 CDT)
- Offset for frame ids in dcd trajectory DimitryASuplatov (Sat May 23 2009 - 11:11:09 CDT)
- Operations with MD frames - acquiring time infromation DimitryASuplatov (Sat May 23 2009 - 08:16:37 CDT)
- Question3 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 16:47:25 CDT)
- Question2 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 15:31:51 CDT)
- Question about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 10:06:54 CDT)
- abinit plugin for VMD not yet tried? Rob (Fri May 22 2009 - 02:08:15 CDT)
- bonds in .psf file KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
- angles and dihedrals in .psf file KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
- RMSF Maria Sanchez (Wed May 20 2009 - 23:14:17 CDT)
- pdb file generated not readable by tleap Yi Shang (Wed May 20 2009 - 14:49:26 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory Axel Kohlmeyer (Wed May 20 2009 - 14:05:27 CDT)
- Distance between COM for 2 chains for each frame of trajectory Florentina Tofoleanu (Wed May 20 2009 - 11:34:18 CDT)
- how to load a state from the command line maria goranovic (Wed May 20 2009 - 09:21:13 CDT)
- VMD 1.8.7b3 and desktop effects on Fedora 10 Nicolas Sapay (Wed May 20 2009 - 07:48:33 CDT)
- default colors MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
- Why is the 'antialias' option is grey? MyLinkka (Wed May 20 2009 - 05:37:47 CDT)
- Request for change in gaussian cube reader Xavier Cartoixa Soler (Tue May 19 2009 - 13:40:37 CDT)
- NVidia GeForce 3D Vision Christoph Weber (Tue May 19 2009 - 12:38:08 CDT)
- Align mistake Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
- Average strcuture Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
- New vmd Windows version crash MyLinkka (Tue May 19 2009 - 05:14:34 CDT)
- Re: New vmd Windows version crash John Stone (Tue May 19 2009 - 21:02:57 CDT)
- Adding two separate pdb files: Lipid Bilayer's with Protein's Lalit (Mon May 18 2009 - 18:07:34 CDT)
- VMD 1.8.7 beta 3 posted for download... John Stone (Mon May 18 2009 - 15:24:21 CDT)
- Model building questions YangMingjun (Mon May 18 2009 - 08:14:38 CDT)
- VMD as a python module Ondrej Marsalek (Mon May 18 2009 - 04:45:39 CDT)
- resolved [Re: vmd / python / f10] Cameron Mura (Sun May 17 2009 - 19:07:47 CDT)
- vmd / python / f10 Cameron Mura (Sat May 16 2009 - 18:43:18 CDT)
- Change requested in lammps plugin for VMD Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
- adding bonds with the mouse and writing psf Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
- a small bug in solvate 1.3 Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
- solvate v1.3 bug 王棽 (Thu May 14 2009 - 07:43:23 CDT)
- How to color atom by charge loc duong ding (Thu May 14 2009 - 00:46:38 CDT)
- Translate Andres Morales N (Wed May 13 2009 - 22:25:22 CDT)
- Color problem. knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
- Can bonds radius be controlled by tcl command? accomp lin (Wed May 13 2009 - 03:54:47 CDT)
- VMD 1.8.7 beta 2 posted for download John Stone (Wed May 13 2009 - 14:09:40 CDT)
- Axes Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
- Sphere representaion with radius from pdb field "occupancy" or "temp. fac" Thomas Zauner (Wed May 13 2009 - 05:08:50 CDT)
- Alignment Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
- selecting waters Mark M Huntress (Mon May 11 2009 - 12:35:10 CDT)
- calculate charges of the binding site residues with psfgen Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
- How to compute excluded volume using volmap? Suman Chakrabarty (Sat May 09 2009 - 14:46:31 CDT)
- Paratool:Problems to load Hessian for charge distribution Sabine Leroch (Fri May 08 2009 - 11:12:05 CDT)
- volmap question Jian Dai (Fri May 08 2009 - 01:22:22 CDT)
- Thiol on gold KIRTANA S (Thu May 07 2009 - 23:57:48 CDT)
- vmd-read data from lammps H Q (Thu May 07 2009 - 20:26:53 CDT)
- namdenergy BIN ZHANG (Thu May 07 2009 - 17:26:23 CDT)
- BMP snapshot Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
- Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Wed May 06 2009 - 13:50:47 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- calculate charges of the binding site residues with psfgen Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Thu May 07 2009 - 07:31:25 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 09:44:06 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 John Stone (Thu May 07 2009 - 10:19:09 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 10:45:00 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- memory allocation issue Edward Lyman (Wed May 06 2009 - 13:37:04 CDT)
- Postdoc position in computational biophysics and nanotehnology Aleksei Aksimentiev (Tue May 05 2009 - 14:28:20 CDT)
- Satellite tobacco mosaic virus images making by VMD 周文昌 (Tue May 05 2009 - 08:31:33 CDT)
- VMD 1.8.7beta1 doesn't close OpenGL window Olaf Lenz (Tue May 05 2009 - 07:53:57 CDT)
- Solvation energies using implicit ligand sampling Richard Daigle (Mon May 04 2009 - 12:21:41 CDT)
- VMD on Cray/CNL Jim Pfaendtner (Fri May 01 2009 - 01:03:07 CDT)
- autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
- NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 11:46:48 CDT)
- Re: NAMD setup for organic compounds Peter Freddolino (Thu Jul 09 2009 - 19:07:56 CDT)
- Re: NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 19:17:09 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Selection "@myselection" Olaf Lenz (Thu Apr 30 2009 - 04:25:05 CDT)
- Size of a protein Khaled Barakat (Wed Apr 29 2009 - 16:06:31 CDT)
- VMD 1.8.7 beta 1 posted for download... John Stone (Wed Apr 29 2009 - 15:06:27 CDT)
- hydrogen bonds tcl script politr_at_huji.ac.il (Tue Apr 28 2009 - 09:40:12 CDT)
- Installation issue Hugh Martin (Tue Apr 28 2009 - 08:09:04 CDT)
- Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
- Manipulating dcd using script in VMD DimitryASuplatov (Tue Apr 28 2009 - 01:26:05 CDT)
- Molefacture "namehead" error Sebasti醤 Guti閞rez (Mon Apr 27 2009 - 16:43:10 CDT)
- Calculating system net charge with tcl in VMD DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
- Re: Calculating system net charge with tcl in VMD Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
- Re: Calculating system net charge with tcl in VMD Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
- Re: Calculating system net charge with tcl in VMD Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
- Using clustering tool Andres Morales N (Fri Apr 24 2009 - 22:56:48 CDT)
- iTrajComp plugin. Andres Morales N (Fri Apr 24 2009 - 22:23:45 CDT)
- graphics for publication YangMingjun (Fri Apr 24 2009 - 10:14:23 CDT)
- Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 01:41:07 CDT)
- local packing density around a chemical group (say, a methyl group or a side chain) Krishnan, Marimuthu (Thu Apr 23 2009 - 10:15:44 CDT)
- installed plugin won't show up next time accomp lin (Thu Apr 23 2009 - 06:58:38 CDT)
- animate read and write A D (Wed Apr 22 2009 - 15:36:00 CDT)
- density profiles Raul Araya (Wed Apr 22 2009 - 11:24:31 CDT)
- Select atoms using coordinates Max (Wed Apr 22 2009 - 06:09:16 CDT)
- sys.argv, python and VMD Michael Kreim (Wed Apr 22 2009 - 03:50:59 CDT)
- setbonds BIN ZHANG (Tue Apr 21 2009 - 23:01:35 CDT)
- Spaceball and OSX JT (Tue Apr 21 2009 - 12:30:04 CDT)
- Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 09:25:08 CDT)
- Re: Secondary Structure Depiction L. Michel Espinoza-Fonseca (Tue Apr 21 2009 - 10:33:50 CDT)
- Re: Secondary Structure Depiction John Stone (Tue Apr 21 2009 - 10:51:48 CDT)
- Mol representation using coordinates Max (Tue Apr 21 2009 - 08:50:05 CDT)
- RMSD-gaps Karne, Sai Harish Babu (Mon Apr 20 2009 - 17:09:51 CDT)
- Solvent Accessible Surface Area zizi moradi (Sun Apr 19 2009 - 09:01:49 CDT)
- (no subject) zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
- Possible bug in vmd 1.8.7 alpha? Cesar Millan (Sat Apr 18 2009 - 00:09:57 CDT)
- coloring by atom type Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
- Re: namd-l: display all frames simultaneously Samuel Coulbourn Flores 鑺卞北 (Fri Apr 17 2009 - 11:35:11 CDT)
- pbctools on alpha version Dan Lussier (Fri Apr 17 2009 - 09:05:06 CDT)
- psf file for Doxorubicin mishacat_at_udm.ru (Thu Apr 16 2009 - 08:32:14 CDT)
- Multiseq error Karne, Sai Harish Babu (Wed Apr 15 2009 - 13:48:18 CDT)
- VRPN & PHANToM Omni Mark Cunningham (Wed Apr 15 2009 - 13:40:03 CDT)
- Problem in finding the HBonds Manishi Pandey (Wed Apr 15 2009 - 02:50:29 CDT)
- (no subject) Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
- RMSD of a protein shell, from the NAMD traj priyodorshi satpati (Sun Apr 12 2009 - 11:02:13 CDT)
- within, used with pbcwrap Neelanjana Sengupta (Fri Apr 10 2009 - 06:35:19 CDT)
- install plugin: problems with vmd_install_extension Steve Massard (Fri Apr 10 2009 - 04:35:45 CDT)
- Release of R.E.D. Server FyD (Thu Apr 09 2009 - 03:31:30 CDT)
- isosurface saving question YI Zhang (Tue Apr 07 2009 - 20:41:17 CDT)
- about TkConsole cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
- Any Mac (Intel) users still running 10.4.x??? John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
- OS X intel binary problem Dan Lussier (Sun Apr 05 2009 - 03:02:20 CDT)
- (no subject) Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
- ligand names Katherine Parra (Fri Apr 03 2009 - 10:35:54 CDT)
- questions about the electron density map YI Zhang (Fri Apr 03 2009 - 05:38:54 CDT)
- Problem with autoionize ? Kalavera_at_gmx.net (Thu Apr 02 2009 - 08:50:49 CDT)
- H-bonds Bernhard Knapp (Thu Apr 02 2009 - 06:27:25 CDT)
- VMD atomselect Steve Massard (Thu Apr 02 2009 - 05:57:37 CDT)
- pairInteraction and NAMDEnergy Goutham (Wed Apr 01 2009 - 17:05:52 CDT)
- paratool questions Lisa Brown (Tue Mar 31 2009 - 15:25:00 CDT)
- pKa and Temperature in MD Caterina Bernini (Tue Mar 31 2009 - 14:47:39 CDT)
- Re: vmd cvs compilation with CUDA fails John Stone (Tue Mar 31 2009 - 14:26:31 CDT)
- Re: cvs plugins do not compile because of errors in the sgsmooth.C John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
- helix axes Alison Grinthal (Tue Mar 31 2009 - 07:34:56 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 10:08:51 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 10:18:06 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 12:15:00 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 12:16:57 CDT)
- Re: helix axes Balazs Jojart (Tue Mar 31 2009 - 14:28:40 CDT)
- Re: helix axes Goutham (Tue Mar 31 2009 - 10:30:30 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- RE: helix axes Wei Huang (Tue Mar 31 2009 - 10:06:20 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- How to add heme to dowser plugin? Irene Newhouse (Mon Mar 30 2009 - 19:27:01 CDT)
- selection syntax Peter Jones (Mon Mar 30 2009 - 01:54:32 CDT)
- Graphical representation Francesco Pietra (Sun Mar 29 2009 - 13:59:15 CDT)
- Synchronization of statements in tcl script Raluca Mihaela ANDREI (Fri Mar 27 2009 - 12:44:32 CDT)
- openGL library Goutham (Thu Mar 26 2009 - 19:48:52 CDT)
- Searching for Number of Resname Ocar Campos (Thu Mar 26 2009 - 14:51:44 CDT)
- howto select stain reveal map Francesco Pietra (Thu Mar 26 2009 - 02:30:29 CDT)
- how to make a mivie by VMD Lan He (Wed Mar 25 2009 - 17:33:41 CDT)
- merging atomselection Goutham (Wed Mar 25 2009 - 16:54:33 CDT)
- how to block psfgen warning messages Thomas Evangelidis (Wed Mar 25 2009 - 16:11:12 CDT)
- Rosetta Academic Training Webinar Nir London (Wed Mar 25 2009 - 11:10:34 CDT)
- Command line argument Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
- External renderer not rendering colors from volumetric data H鰂ling Martin (Wed Mar 25 2009 - 08:34:24 CDT)
- vmd_plot Francesco Pietra (Wed Mar 25 2009 - 06:16:36 CDT)
- GTP topology file tiziano gallo cassarino (Fri Mar 20 2009 - 08:54:12 CDT)
- near clip Leandro Mart韓ez (Fri Mar 20 2009 - 07:48:51 CDT)
- VMD 1.8.7 alpha 62 posted for all mainstream platforms... John Stone (Fri Mar 20 2009 - 03:30:48 CDT)
- accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
- accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
- building VMD on LINUX Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
- paratool tutorial/ complete user guide Lisa Brown (Mon Mar 16 2009 - 14:43:49 CDT)
- VMD needs your vote. Nir London (Mon Mar 16 2009 - 12:21:07 CDT)
- Posting messages to VMD-L truncates the empty spaces in lines JT (Sun Mar 15 2009 - 18:58:01 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 20:41:58 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Tue Mar 17 2009 - 22:05:43 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines Rogan Carr (Wed Mar 18 2009 - 16:12:37 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- rlwrap bug in Ubuntu Thomas Evangelidis (Sun Mar 15 2009 - 01:11:30 CDT)
- how to find the sign of the dihedral angle (full message). karthigeyan karthigeyantp (Sat Mar 14 2009 - 00:23:47 CDT)
- isosurface from pdb with beta field Peter Varnai (Fri Mar 13 2009 - 16:09:33 CDT)
- Problem with the script mono2poly.tcl Fabio Trovato (Fri Mar 13 2009 - 11:46:44 CDT)
- color update for xyz trajectory Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
- question of iso-surface in VMD graphical representations HeeSung Choi (Thu Mar 12 2009 - 13:04:01 CDT)
- Script problem Christopher Hartshorn (Thu Mar 12 2009 - 03:40:50 CDT)
- pops/popc lipid bilayer Jianping Lin (Wed Mar 11 2009 - 19:32:42 CDT)
- How to use " segment " in tcl script. accomp lin (Wed Mar 11 2009 - 01:31:13 CDT)
- obj export Raluca Mihaela ANDREI (Tue Mar 10 2009 - 03:27:40 CDT)
- regarding draw_arrow.tcl Falgun Shah (Mon Mar 09 2009 - 17:55:58 CDT)
- (no subject) Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
- vmd crashes bo baker (Mon Mar 09 2009 - 04:49:42 CDT)
- motion correlation map Falgun Shah (Sun Mar 08 2009 - 12:41:18 CDT)
- charmm binary ele. pot. Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
- the scripting interface Dawn (Sun Mar 08 2009 - 10:00:19 CDT)
- correlation Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
- problem with Dowser Irene Newhouse (Sat Mar 07 2009 - 19:50:35 CST)
- Save thousands... no one will know Olivia Reilly (Sat Mar 07 2009 - 11:23:52 CST)
- Your C0deine 0rder #247424 Fran Villa (Fri Mar 06 2009 - 19:51:11 CST)
- Charm force field for POPS lipid Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
- Re: adding lipid bilayers Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
- adding lipid bilayers Goutham (Fri Mar 06 2009 - 00:46:47 CST)
- use of spring tcl script Falgun Shah (Thu Mar 05 2009 - 20:49:30 CST)
- Script for calculating hydrogen-bonding energy Jianping Lin (Thu Mar 05 2009 - 19:19:28 CST)
- Hydrophobicity Scale Goutham (Thu Mar 05 2009 - 18:58:41 CST)
- Re: selection by residue Marius Retegan (Thu Mar 05 2009 - 08:29:28 CST)
- selection by residue Marius Retegan (Thu Mar 05 2009 - 06:47:53 CST)
- Seventh European Workshop in Drug Design - Siena Lucilla Angeli (Thu Mar 05 2009 - 06:42:36 CST)
- script to resolve trajectory "jumps" on Desmond dynamic Nicola Giacche' (Wed Mar 04 2009 - 10:15:03 CST)
- Problem in IMD with Compiled VMD Amr Rizq (Wed Mar 04 2009 - 06:00:58 CST)
- OpenGL Window Max (Wed Mar 04 2009 - 05:16:54 CST)
- How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Tue Mar 03 2009 - 17:30:33 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- Display issue on VMD for Linux Samuel Coulbourn Flores 鑺卞北 (Wed Mar 04 2009 - 19:43:59 CST)
- Re: Display issue on VMD for Linux Axel Kohlmeyer (Wed Mar 04 2009 - 21:55:04 CST)
- Re: Display issue on VMD for Linux Samuel Coulbourn Flores 鑺卞北 (Thu Mar 12 2009 - 16:54:11 CDT)
- Re: Display issue on VMD for Linux John Stone (Thu Mar 12 2009 - 17:02:21 CDT)
- Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- displaying residues within 5 A of ligand in vmd Falgun Shah (Tue Mar 03 2009 - 09:53:29 CST)
- Outline rendering style with Tachyon Heikki Kasnanen (Tue Mar 03 2009 - 02:20:08 CST)
- rmsd computation in text mode with a reference pdb Monika Sharma (Mon Mar 02 2009 - 01:18:30 CST)
- select atoms bo baker (Sun Mar 01 2009 - 22:18:42 CST)
- images for publication Falgun Shah (Sun Mar 01 2009 - 15:23:12 CST)
- Re: delete residues from trajectory bo baker (Sat Feb 28 2009 - 23:06:17 CST)
- paratool: gaussian output error Falgun Shah (Sat Feb 28 2009 - 17:15:25 CST)
- delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:46:20 CST)
- delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:44:06 CST)
- vmd error related to opengl FyD (Fri Feb 27 2009 - 18:12:02 CST)
- problem while integrating bigdcd into a namespace Thomas Evangelidis (Fri Feb 27 2009 - 16:19:03 CST)
- wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 16:01:30 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 20:47:32 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 21:24:13 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 22:01:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Mon Mar 02 2009 - 11:15:27 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
- (no subject) Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
- draw command with different material BIN ZHANG (Thu Feb 26 2009 - 23:31:08 CST)
- proline trans to cis Roman Petrenko (Thu Feb 26 2009 - 19:20:07 CST)
- Does command "animate delete all" free memory? Fred (Rui FENG) (Thu Feb 26 2009 - 15:00:53 CST)
- Displaying local water molecules throughout trajectory ben rodriguez (Thu Feb 26 2009 - 14:47:26 CST)
- Weighted RMS fit bug Jumper, John (Thu Feb 26 2009 - 12:21:15 CST)
- MM/PBSA in VMD Jianping Lin (Thu Feb 26 2009 - 12:12:46 CST)
- Help: Installation Problem Lee Amy (Wed Feb 25 2009 - 09:45:12 CST)
- to get angle from matrix of rotation around an axis Yinglong Miao (Wed Feb 25 2009 - 14:55:27 CST)
- volmap masks Dan Willenbring (Wed Feb 25 2009 - 14:17:32 CST)
- embed VMD in web page Xunlei Wu (Wed Feb 25 2009 - 11:21:39 CST)
- charm27 forcefield_topology Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
- question about "measure dihed" with COM points Lee, Hwan Kyu (NIH/NHLBI) [E] (Tue Feb 24 2009 - 19:09:27 CST)
- Re: question about "measure dihed" with COM points Axel Kohlmeyer (Tue Feb 24 2009 - 19:51:15 CST)
- Re: question about "measure dihed" with COM points J T (Tue Feb 24 2009 - 21:37:21 CST)
- Test Lee Amy (Tue Feb 24 2009 - 07:48:25 CST)
- info for computational chemistry awards, please forward Carlos Simmerling (Fri Feb 20 2009 - 10:22:27 CST)
- Adding a Water Box Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
- FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0* Chuck (Mon Feb 23 2009 - 15:52:05 CST)
- Can you show me an example of the .xyz file that is used to calculate the IR spectrum Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
- Membrane builder ?'s Christopher Hartshorn (Mon Feb 23 2009 - 13:09:16 CST)
- passing arguments to a vmd script which is executed using play or source mariagoranovic_at_gmail.com (Mon Feb 23 2009 - 04:24:14 CST)
- multiple colors for a single atom BIN ZHANG (Mon Feb 23 2009 - 00:05:50 CST)
- Is there a way to add custormized representation method to VMD Yang, Shaorui (Sun Feb 22 2009 - 22:42:19 CST)
- VMD exits immediately after starting on Windows xp Robert Mullen (Sun Feb 22 2009 - 17:35:46 CST)
- a way to create a nice image politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
- transparent background James Rustad (Fri Feb 20 2009 - 13:55:55 CST)
- converting trajectory files with catdcd in command line Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
- vmd intel compiler prebuild for 64 bit Roman Petrenko (Thu Feb 19 2009 - 19:29:09 CST)
- Unrecognized Chains in VMD for tetrameric protein ben rodriguez (Thu Feb 19 2009 - 18:14:55 CST)
- SMD question Edward Lyman (Thu Feb 19 2009 - 14:00:32 CST)
- "pbcwithin" keyword Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
- making .psf file based on .gro or .pdb Hideya Nakamura (Tue Feb 17 2009 - 18:19:18 CST)
- vmd with cuda1.0 Roman Petrenko (Mon Feb 16 2009 - 21:47:16 CST)
- change cylinder surface properties Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
- error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:23:32 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:54:45 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 12:10:11 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 13:14:31 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 09:44:02 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Wed Feb 18 2009 - 17:32:26 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 17:43:14 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Axel Kohlmeyer (Mon Feb 16 2009 - 12:26:19 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- Cannot read MSMS facet file BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
- The display windows is out of my screen G.H. Zuo (Sun Feb 15 2009 - 00:21:05 CST)
- about measuring volume of the binding site Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
- Membrane Proteins Tutorial Marcos Sotomayor (Fri Feb 13 2009 - 16:25:15 CST)
- Atom distances from trajotory bo baker (Thu Feb 12 2009 - 23:50:21 CST)
- Problem when labeling atoms on machine with intel X4500HD integreted graphic card Shi, Chuanyin (Thu Feb 12 2009 - 15:25:45 CST)
- installation Fernanda S. (Thu Feb 12 2009 - 13:08:19 CST)
- Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
- Re: installation John Stone (Sat Feb 14 2009 - 14:32:53 CST)
- Re: installation Fernanda S. (Sat Feb 14 2009 - 17:18:57 CST)
- Re: installation John Stone (Sat Feb 14 2009 - 19:34:29 CST)
- Re: installation Fernanda S. (Sun Feb 15 2009 - 08:05:10 CST)
- Re: installation Axel Kohlmeyer (Sun Feb 15 2009 - 12:46:34 CST)
- Re: installation John Stone (Sun Feb 15 2009 - 12:54:29 CST)
- Re: installation Fernanda S. (Sun Feb 15 2009 - 13:32:20 CST)
- Re: installation Ramon Crehuet (Fri Feb 13 2009 - 05:08:51 CST)
- Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
- Atom distances from trajotory bo baker (Thu Feb 12 2009 - 03:27:20 CST)
- Load multiple files bo baker (Wed Feb 11 2009 - 22:43:35 CST)
- problem Barbault Florent (Wed Feb 11 2009 - 02:41:52 CST)
- Flow Fields Roland Schulz (Tue Feb 10 2009 - 16:04:23 CST)
- How to specify processors for running VMD on a cluster? Yinglong Miao (Tue Feb 10 2009 - 10:45:27 CST)
- Equivalent Mouse Capabilities to Tracker CAVELib Amr Rizq (Mon Feb 09 2009 - 07:06:26 CST)
- multiplot : integration of undrawing command (?) Nadja Lederer (Thu Feb 05 2009 - 05:14:43 CST)
- "Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009 TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
- Take a look at jaxtr! Sudipta Sinha (Sun Feb 08 2009 - 22:20:40 CST)
- concatenate protein and 2 ligand files Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
- International opportunity robert (Fri Feb 06 2009 - 11:25:07 CST)
- VMD and IED on Windows XP Roland Schmucki (Thu Feb 05 2009 - 20:57:34 CST)
- Progress Bar for the Elapsed Time: rendering problem Suman Chakrabarty (Thu Feb 05 2009 - 16:42:20 CST)
- Render alpha-carbon trace as cartoon Patrick Buck (Thu Feb 05 2009 - 13:57:54 CST)
- trajectory path script Katherine Parra (Thu Feb 05 2009 - 11:00:12 CST)
- Atomselect in NAMD GUI bo baker (Thu Feb 05 2009 - 05:02:45 CST)
- "Sorry, this version VMD was compiled with Python support disabled" Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
- Apologies Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
- problem with "measure fit " Leontyev Igor (Tue Feb 03 2009 - 15:51:02 CST)
- property iterate over a range (representation / draw style) bonicoli_at_loria.fr (Tue Feb 03 2009 - 11:16:12 CST)
- rmsd matrix Andres Morales N (Tue Feb 03 2009 - 10:01:28 CST)
- deleting specific residues or atoms maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
- add a new representation style to VMD Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
- pictures with frame BIN ZHANG (Tue Feb 03 2009 - 01:40:32 CST)
- selecting set of residue Falgun Shah (Mon Feb 02 2009 - 14:44:45 CST)
- Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64) Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
- rmsd matrix Andres Morales N (Mon Feb 02 2009 - 10:59:50 CST)
- Link between the electrostatic potential on the surface and the grid.dx generated by APBS Emeline Leproult (Mon Feb 02 2009 - 09:57:02 CST)
- scriptable way to add hydrogens Thomas Evangelidis (Sat Jan 31 2009 - 16:25:16 CST)
- How to install the inorganicbuilder on Windows vista Hideya Nakamura (Thu Jan 29 2009 - 19:41:45 CST)
- Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem Katya Lyakhova (Wed Jan 28 2009 - 09:19:35 CST)
- [patch] potential CUDA acceleration - load-balancing on different CUDA devices Martin Aum黮ler (Wed Jan 28 2009 - 06:35:19 CST)
- get a PDB file from DCD file Andres Morales N (Tue Jan 27 2009 - 07:58:23 CST)
- Rosetta Academic Training Workshop Nir London (Tue Jan 27 2009 - 07:05:12 CST)
- VMD & NAMD atoms naming convention? Javier Goicochea (Tue Jan 27 2009 - 03:05:09 CST)
- Note to VMD-L about posting attachments etc... John Stone (Mon Jan 26 2009 - 15:58:53 CST)
- Re: (Resend) Re: Breaking Bonds in VMD John Stone (Mon Jan 26 2009 - 15:55:29 CST)
- (no subject) Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
- (no subject) gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
- how to set color parameters differently for different molecules Thomas Evangelidis (Sun Jan 25 2009 - 12:09:10 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Re: how to set color parameters differently for different molecules John Stone (Thu Jan 29 2009 - 15:41:18 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 19:08:08 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Thu Jan 29 2009 - 20:35:35 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Re: how to set color parameters differently for different molecules MQO. Carlos Javier N煤帽ez Aguero (Thu Jan 29 2009 - 19:03:40 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- VMD not loading in Suse 11.1 Andrew James Bennett (Fri Jan 23 2009 - 05:43:05 CST)
- Tcl script Leonardo Trabuco (Thu Jan 22 2009 - 00:01:39 CST)
- Tcl script varsha gautham (Wed Jan 21 2009 - 22:45:29 CST)
- accessing bonds angles dihedrals etc lists after PSF file is read into VMD Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Mon Jan 26 2009 - 15:42:17 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Breaking Bonds in VMD nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
- VMD Installation problem on Ubuntu 8.10 maria goranovic (Tue Jan 20 2009 - 08:27:12 CST)
- VMD plugin for Desmond 周文昌 (Tue Jan 20 2009 - 08:23:13 CST)
- VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 20 2009 - 06:09:27 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Dan Wright (Tue Jan 20 2009 - 15:13:21 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 15:15:14 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 27 2009 - 11:35:15 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 27 2009 - 11:56:00 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Axel Kohlmeyer (Tue Jan 20 2009 - 08:56:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
- Fwd: Tcl script varsha gautham (Tue Jan 20 2009 - 02:11:56 CST)
- Problems with tcl/tk 8.5 Bernd Doser (Tue Jan 20 2009 - 02:08:05 CST)
- Download the newest version of VMD 周文昌 (Mon Jan 19 2009 - 04:15:52 CST)
- How to get rid of default patch for NTER and CTER Jianping Lin (Sun Jan 18 2009 - 15:45:34 CST)
- Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... John Stone (Fri Jan 16 2009 - 15:34:21 CST)
- XYZ trajectory with different atom types? AA (Fri Jan 16 2009 - 13:21:15 CST)
- trans routine Edward Lyman (Fri Jan 16 2009 - 12:49:24 CST)
- Problem with Install bo baker (Fri Jan 16 2009 - 05:12:34 CST)
- ANGLES and DIHEDRALS ... location in VMD code? Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
- helicity score? BIN ZHANG (Thu Jan 15 2009 - 23:39:21 CST)
- Understanding topology files? Javier Goicochea (Thu Jan 15 2009 - 08:03:50 CST)
- loosing color when rendering molecular surface in VMD Michael Klein (Wed Jan 14 2009 - 20:17:23 CST)
- Data fields in vmd Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
- updating DCD frames in python Michael Kreim (Wed Jan 14 2009 - 09:55:06 CST)
- building loops riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
- Dobule and triple bonds Max (Tue Jan 13 2009 - 04:32:04 CST)
- center of mass Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
- Release of the R.E.D.-III.1 tools FyD (Mon Jan 12 2009 - 05:59:14 CST)
- VMD for Linux bo baker (Mon Jan 12 2009 - 05:14:50 CST)
- : about complexing protein and ligand! Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
- odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 13:26:57 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:37:10 CST)
- RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 18:21:59 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 18:50:51 CST)
- RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 19:49:29 CST)
- Re: odd render problems with Vista Eric H. Lee (Sun Jan 11 2009 - 20:53:13 CST)
- 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
- Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:27:58 CST)
- Re: odd render problems with Vista Benjamin Bouvier (Sun Jan 11 2009 - 14:20:04 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- putting a set of selections in a list or an array A D (Sun Jan 11 2009 - 12:14:08 CST)
- cube file question Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
- Functional Groups Max (Fri Jan 09 2009 - 04:51:39 CST)
- Calculating acyl chain order parameter profile on phospholipid vesicles Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
- which model in pdb vill VMD present? Steven W (Wed Jan 07 2009 - 12:21:59 CST)
- measure rmsf - command (step argument) Nadja Lederer (Wed Jan 07 2009 - 05:20:42 CST)
- Large dcd file jouko_at_berkeley.edu (Tue Jan 06 2009 - 16:31:46 CST)
- Problems with NewCartoon Cartoon Representations haosheng_at_hec.utah.edu (Tue Jan 06 2009 - 15:39:43 CST)
- eliminate atoms from psf and pdb files caterinabernini_at_unisi.it (Tue Jan 06 2009 - 11:40:15 CST)
- changing bond color jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
- tcl scripts in parallel in VMD? Maxim Paliy (Tue Jan 06 2009 - 08:14:41 CST)
- a problem on Red Hat Enterprise Linux 5 Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
- list of all the file type keywords for "mol load"? Maxim Paliy (Mon Jan 05 2009 - 10:00:20 CST)
- Changing the Secondary Structure of a Protein MIke S (Sun Dec 28 2008 - 01:18:23 CST)
- I need a bid trajectory please!!! Thomas Evangelidis (Thu Dec 25 2008 - 16:54:44 CST)
- Space distribution functions aneesh cna (Wed Dec 24 2008 - 23:08:03 CST)
- beta column format in PDB BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
- SBCG membrane Dolan, Michael (NIH/NIAID) [C] (Wed Dec 24 2008 - 11:59:25 CST)
- difficulties referencing a variable within a namespace Thomas Evangelidis (Sun Dec 21 2008 - 21:00:38 CST)
- Remove PBC Alessandro.Maiorana_at_roma2.infn.it (Sun Dec 21 2008 - 04:09:38 CST)
- VMD Animation example doesn't work... Alberto Sergio Garay (Fri Dec 19 2008 - 06:52:05 CST)
- CHARMM to AMBER trajectory conversion Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
- known issues with measure hbonds Harindar Keer (Thu Dec 18 2008 - 17:59:34 CST)
- How to get all the angle combinations? BIN ZHANG (Wed Dec 17 2008 - 23:07:16 CST)
- QM Geometry optimization bo baker (Tue Dec 16 2008 - 23:59:49 CST)
- VMD Animation example doesn't work... Alberto Sergio Garay (Tue Dec 16 2008 - 04:43:23 CST)
- defintion of alpha helix in vmd? Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
- haptics device "novint falcon" angel_at_cbuc.cl (Mon Dec 15 2008 - 09:13:31 CST)
- the exact definition of the keyword "radius" of the atom selection Lan Hua (Sat Dec 13 2008 - 14:10:40 CST)
- paratool dont recognize gaussian output angel_at_cbuc.cl (Fri Dec 12 2008 - 10:10:13 CST)
- VMD, VRPN, Phantom Desktop Nicholas Labello (Fri Dec 12 2008 - 09:43:19 CST)
- coloring of an item created by canvas Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
- Problem finding center of mass for all the frames ramya narasimhan (Wed Dec 10 2008 - 01:31:38 CST)
- How to get number of electrons of an atom in VMD? BIN ZHANG (Mon Dec 08 2008 - 15:31:42 CST)
- equilibrating a membrane patch Edward Lyman (Mon Dec 08 2008 - 13:25:30 CST)
- regarding writemol2 jani sahil (Sat Dec 06 2008 - 00:34:19 CST)
- reagsrding writemol2 jani sahil (Fri Dec 05 2008 - 00:11:42 CST)
- How to generate an index (.ind) file? Anirban Ghosh (Fri Dec 05 2008 - 00:07:49 CST)
- atom selection aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
- To find the residues on each side of the protein ramya narasimhan (Wed Dec 03 2008 - 02:42:33 CST)
- undrawing lines in multiplot? Nadja Lederer (Wed Dec 03 2008 - 02:29:57 CST)
- memory leak found Ondrej Marsalek (Tue Dec 02 2008 - 09:08:09 CST)
- Rotation of molecules Bj鰎n Windsh黦el (Tue Dec 02 2008 - 08:20:30 CST)
- Getting data as vector or matrix Iman Salehinia (Tue Dec 02 2008 - 00:48:29 CST)
- Running VMD on Mac OS X Christopher Share (Mon Dec 01 2008 - 23:23:08 CST)
- prepare initial structure oguz gurbulak (Mon Dec 01 2008 - 13:52:31 CST)
- script that reacts on movement of frameslider in vmd main Nadja Lederer (Mon Dec 01 2008 - 07:41:36 CST)
- how to prevent view reset on data load Ondrej Marsalek (Sat Nov 29 2008 - 10:52:45 CST)
- transparent or translucent backgrond for images Neelanjana Sengupta (Sat Nov 29 2008 - 06:18:46 CST)
- total number of donors and acceptors Roman Petrenko (Wed Nov 26 2008 - 18:27:16 CST)
- Desmond trajectory conversion to dcd format Dong Xu (Wed Nov 26 2008 - 16:24:57 CST)
- Other color scales than the predefined ones? Berit Hinnemann (Wed Nov 26 2008 - 07:00:17 CST)
- Re: bug in comments interpretation of vmd John Stone (Wed Nov 26 2008 - 11:13:49 CST)
- Re: multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 11:12:20 CST)
- Other color scales than the predefined ones Berit Hinnemann (Wed Nov 26 2008 - 09:52:23 CST)
- tcl fscript or Removeing protein flucutation karthigeyan karthigeyantp (Wed Nov 26 2008 - 05:45:33 CST)
- Movie of a xyz trajectory Roberto Gaspari (Wed Nov 26 2008 - 03:09:43 CST)
- multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 02:34:31 CST)
- drawing lines Ryan Pavlovicz (Tue Nov 25 2008 - 12:38:31 CST)
- unloading volumetric data Ondrej Marsalek (Mon Nov 24 2008 - 10:18:39 CST)
- CG bead definition BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
- entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:23:07 CST)
- entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:16:40 CST)
- Calculating volumes enclosed by SAS Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
- need tcl help, please Irene Newhouse (Fri Nov 21 2008 - 12:57:03 CST)
- view only parts of the loaded volumetric data Vlad Cojocaru (Fri Nov 21 2008 - 04:18:11 CST)
- Loading .vel file in VMD dipti lele (Thu Nov 20 2008 - 23:03:42 CST)
- question Wojciech Rajchel (Thu Nov 20 2008 - 11:08:31 CST)
- running a script Mark M Huntress (Thu Nov 20 2008 - 10:03:10 CST)
- how to get temperature fluctuations maria goranovic (Thu Nov 20 2008 - 08:36:06 CST)
- 3D Graphics Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
- [patch] Autodetection of formats supported by openbabel FX (Thu Nov 20 2008 - 05:07:17 CST)
- H-bond occupancy Irene Newhouse (Wed Nov 19 2008 - 12:23:58 CST)
- representation ColorID in Tcl David Tanner (Wed Nov 19 2008 - 11:25:42 CST)
- IED analysis 周文昌 (Wed Nov 19 2008 - 02:19:19 CST)
- Autoionize plugin Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
- use configure.options Chen Chen (Mon Nov 17 2008 - 19:34:24 CST)
- General question about the memory usage of VMD tinifcarter_at_gmail.com (Mon Nov 17 2008 - 11:48:00 CST)
- how to run catdcd from within a proc Thomas Evangelidis (Mon Nov 17 2008 - 10:42:44 CST)
- Installation problems on openSUSE 10.3 Lawrence Wickert (Sat Nov 15 2008 - 20:22:44 CST)
- (no subject) Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
- How to set the default properties of drawing methods? Heikki Kasnanen (Thu Nov 13 2008 - 08:39:43 CST)
- combine.tcl error Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
- About Hydrogen bond calculation 周文昌 (Thu Nov 13 2008 - 03:20:03 CST)
- wavefront and VMD Sandro Canavezzi de Abreu (Wed Nov 12 2008 - 14:07:36 CST)
- (no subject) Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
- OpenGL Display max_at_liaad.up.pt (Tue Nov 11 2008 - 04:03:12 CST)
- doubling a membrane Edward Lyman (Mon Nov 10 2008 - 16:42:13 CST)
- fasta2pdb Roman Petrenko (Mon Nov 10 2008 - 14:33:24 CST)
- movie Abu Naser (Sun Nov 09 2008 - 11:06:20 CST)
- usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:17:41 CST)
- usage for the pacth 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:10:17 CST)
- usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Fri Nov 07 2008 - 19:04:35 CST)
- load MSMS files into vmd Prevost Martine (Fri Nov 07 2008 - 09:29:34 CST)
- Multiple incompatible definitions warning Subramanian Vaitheeswaran (Thu Nov 06 2008 - 11:25:01 CST)
- RMSD error "Matrix: Warning: no convergence" Maria Sanchez (Thu Nov 06 2008 - 09:16:20 CST)
- Sequentially numbering atom names in pdb file Subramanian Vaitheeswaran (Wed Nov 05 2008 - 14:29:24 CST)
- CG Map Tool Syntax Error Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
- B factor calculation Ay艧e 脰zlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
- Average position of atom set Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
- Psfgen : apply patches Nicolas Floquet (Tue Nov 04 2008 - 06:51:57 CST)
- conformations of a linker Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
- [Fwd: problems with manipulating control switches on VMS main menu] Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
- Per-frame 'graphics'? Benjamin Bouvier (Fri Oct 31 2008 - 10:46:03 CDT)
- VMD crashes on displaying NewRibbons or New Cartoon Jufang Shan (Fri Oct 31 2008 - 10:13:32 CDT)
- Visualizing multiple molecules max_at_liaad.up.pt (Fri Oct 31 2008 - 07:26:00 CDT)
- PMEpot units jirasak wong-ekkabut (Thu Oct 30 2008 - 15:10:05 CDT)
- problems with manipulating control switches on VMS main menu Piotr Cieplak (Wed Oct 29 2008 - 19:52:24 CDT)
- Render surface colored by electrostatic potential Adam Kraut (Tue Oct 28 2008 - 13:27:52 CDT)
- isosurface question Raluca Mihaela ANDREI (Tue Oct 28 2008 - 12:48:14 CDT)
- move matrix definition Edward Lyman (Tue Oct 28 2008 - 11:39:42 CDT)
- Free Trial of New Toxicity Prediction Software (LD50, MRDD, side effects) is now available Maxim Kholin (Tue Oct 28 2008 - 09:00:25 CDT)
- reading multiples molecules. no tengo nombre (Tue Oct 28 2008 - 05:05:19 CDT)
- A question about the namd energy plugin of VMD wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
- Camera in VMD!!! Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
- Warning: no convergence in alignment Jianhui Tian (Fri Oct 24 2008 - 17:02:08 CDT)
- PBCtools verison 2.3: how to obtain it? mon_sharma_at_research.iiit.ac.in (Fri Oct 24 2008 - 09:19:37 CDT)
- advanced selections (or explicit pair list) for measure gofr ? Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
- independent stereo display Petrica GASCA (Thu Oct 23 2008 - 11:39:07 CDT)
- create movie from multiple frames Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
- extraction of bound water molecules in a trajectory mon_sharma_at_research.iiit.ac.in (Thu Oct 23 2008 - 04:39:07 CDT)
- change the radius of atoms Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
- Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array' Perreault, Roger Edward (Wed Oct 22 2008 - 20:34:57 CDT)
- Re: A question about the plugin of salt bridge plugin Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
- dcd format JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
- Extract parameters of Shape-based Coarse Graining model from AA simulation dongsheng lei (Wed Oct 22 2008 - 01:54:54 CDT)
- convert THR and SER to the phosphorylated forms bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
- Querry dipti lele (Tue Oct 21 2008 - 08:42:18 CDT)
- fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 07:55:09 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 14:53:57 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 15:30:46 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 15:53:07 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Wed Oct 22 2008 - 04:56:03 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Wed Oct 22 2008 - 10:38:15 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- volmap Panagiota Georgoulia (Tue Oct 21 2008 - 06:17:51 CDT)
- (no subject) JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
- Selecting some atoms and changing the color of them Iman Salehinia (Tue Oct 21 2008 - 01:55:03 CDT)
- animated gif Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
- PSFGEN problem with URA residues Anirban Ghosh (Mon Oct 20 2008 - 06:27:06 CDT)
- feature request Tamara Rogers (Sun Oct 19 2008 - 12:38:18 CDT)
- Improving VMD performance on Linux? nbabcock_at_qis.ucalgary.ca (Sat Oct 18 2008 - 14:06:35 CDT)
- Out of town until November 1 John Stone (Thu Oct 16 2008 - 15:53:42 CDT)
- Catdcd? Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
- saving trajectories from the command line Jim Pfaendtner (Thu Oct 16 2008 - 07:28:00 CDT)
- Problem in text mode Wei Huang (Thu Oct 16 2008 - 00:25:07 CDT)
- velocity calculations Ryan Pavlovicz (Wed Oct 15 2008 - 10:18:50 CDT)
- Deleting frames / molecules does not free up memory! Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
- why atomselection "protein" can not choose all the protein atoms with different alternate locations? Lan Hua (Mon Oct 13 2008 - 16:49:07 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? Axel Kohlmeyer (Mon Oct 13 2008 - 18:23:35 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? John Stone (Tue Oct 14 2008 - 11:43:43 CDT)
- How to specify color based on dihedral angle? Suman Chakrabarty (Mon Oct 13 2008 - 13:09:53 CDT)
- Windows version: Loading/writing files Neelanjana Sengupta (Mon Oct 13 2008 - 07:53:41 CDT)
- CHARMM TO AMBER FORMAT CONVERT Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
- Error in "measure fit" Stephen Hicks (Sat Oct 11 2008 - 15:05:45 CDT)
- Density distribution plots mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
- STRIDE analysis of beta-sheets in VMD Tristan Bereau (Fri Oct 10 2008 - 15:28:33 CDT)
- Question about the Main Menu window display Alfredo Quevedo (Fri Oct 10 2008 - 14:15:47 CDT)
- loading python Ryan Pavlovicz (Thu Oct 09 2008 - 15:21:15 CDT)
- Density distribution plots mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
- Povray render cuts litorice,bond,cpk representations schwarz_at_titus.u-strasbg.fr (Thu Oct 09 2008 - 05:14:20 CDT)
- Fw: VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Wed Oct 08 2008 - 20:21:11 CDT)
- pbctools usage Subramanian Vaitheeswaran (Wed Oct 08 2008 - 08:21:10 CDT)
- How to visualize only parts of a molecular surface schwarz (Wed Oct 08 2008 - 08:11:47 CDT)
- Fullscreen mode in VMD Alexandr Bezginov (Tue Oct 07 2008 - 12:34:59 CDT)
- Vmd on MACOSX awkward msg at startup and error when running Ubq simulation Montoya, Jesus Gerardo Galaz (Mon Oct 06 2008 - 14:58:39 CDT)
- lipid tail selection BIN ZHANG (Sun Oct 05 2008 - 01:16:45 CDT)
- VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Fri Oct 03 2008 - 14:03:28 CDT)
- Pairwise RMSD Dong Xu (Fri Oct 03 2008 - 10:10:16 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 08:43:39 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 22:55:52 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 11:46:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:03:16 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 12:05:17 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:08:35 CDT)
- Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Anirban Ghosh (Sat Oct 04 2008 - 13:04:09 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 07:23:25 CDT)
- Problem with creating psf file from structure made by inorganic builder Anneta Tzampazi (Fri Oct 03 2008 - 04:43:19 CDT)
- TAB key in vmd terminal BIN ZHANG (Thu Oct 02 2008 - 23:32:00 CDT)
- suggested graphic card for Mac Pro Joaquim Rui Rodrigues (Thu Oct 02 2008 - 12:09:32 CDT)
- volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:18:38 CDT)
- volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:08:11 CDT)
- Does VMD support cfg file format? zhjjvmd (Wed Oct 01 2008 - 03:52:32 CDT)
- atom type Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
- water box Rudra Banerjee (Tue Sep 30 2008 - 03:48:37 CDT)
- periodic box image in tcl script Brian Kidd (Mon Sep 29 2008 - 11:27:39 CDT)
- question about sscache qwang_at_mail.uh.edu (Sun Sep 28 2008 - 19:33:02 CDT)
- (no subject) studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
- question about sscache qwang_at_mail.uh.edu (Fri Sep 26 2008 - 14:00:07 CDT)
- visualisation problem with bonds and PBC Jennifer Williams (Fri Sep 26 2008 - 09:32:42 CDT)
- Atoms numbers in VMD Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
- Creating a cuboid box to fit in atoms Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
- Re: psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 23:11:04 CDT)
- psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 22:45:49 CDT)
- How to render an image like this one with VMD? Dong Xu (Wed Sep 24 2008 - 20:58:12 CDT)
- water residence time L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 15:56:53 CDT)
- Re: Help, my molecule is being destroyed John Stone (Wed Sep 24 2008 - 15:46:14 CDT)
- Movie maker problem in VMD Ananyo Bandyopadhyay (Wed Sep 24 2008 - 11:11:14 CDT)
- weird behavior with RMSD Irene Newhouse (Tue Sep 23 2008 - 16:21:02 CDT)
- viewing an embryo markt_at_mskcc.org (Tue Sep 23 2008 - 14:04:41 CDT)
- Re: namd-l: solvate a molecule Chang, Christopher (Tue Sep 23 2008 - 11:57:58 CDT)
- Periodic BC Nd S (Mon Sep 22 2008 - 15:26:20 CDT)
- solvate a molecule Rudra Banerjee (Sat Sep 20 2008 - 01:08:03 CDT)
- rotation around phi/psi Roman Petrenko (Fri Sep 19 2008 - 21:05:24 CDT)
- Solvation Box Navdeep (Fri Sep 19 2008 - 16:43:25 CDT)
- Projection of a vector on to another. Katherine Parra (Fri Sep 19 2008 - 13:56:01 CDT)
- running simulation on dual core processor Mamta Mohan (Fri Sep 19 2008 - 10:44:27 CDT)
- Restarting a simulation $ Langevin Anirban Ghosh (Fri Sep 19 2008 - 07:17:12 CDT)
- difficulty in installing VMD on linux. Deepti Mishra (Fri Sep 19 2008 - 05:47:18 CDT)
- trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Fri Sep 19 2008 - 04:30:01 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
- Re: trouble with running vmd after installation , machine gets hung John Stone (Sun Sep 21 2008 - 02:36:43 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Sun Sep 21 2008 - 03:13:41 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Mon Sep 22 2008 - 18:45:30 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
- Error generating psf files Nd S (Thu Sep 18 2008 - 18:55:28 CDT)
- Solid Support Problem Christopher Hartshorn (Thu Sep 18 2008 - 13:33:07 CDT)
- Fw: warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 13:08:29 CDT)
- warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 10:11:33 CDT)
- counting gas molecules inside the nanotube mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
- Trouble installing VMD on LINUX machine Gregor Kladnik (Thu Sep 18 2008 - 06:43:14 CDT)
- Re: problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 03:29:07 CDT)
- psfgen problem Rudra Banerjee (Thu Sep 18 2008 - 01:45:55 CDT)
- problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 01:12:44 CDT)
- apbs electrostatics James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
- solvation Mamta Mohan (Wed Sep 17 2008 - 13:28:55 CDT)
- simulation image question Mamta Mohan (Wed Sep 17 2008 - 12:42:34 CDT)
- problem downloading VMD 1.8.6 source code Lai, Massimo (Wed Sep 17 2008 - 09:59:40 CDT)
- Interface Propensity bo baker (Wed Sep 17 2008 - 05:56:20 CDT)
- regarding rotating dihedral jani sahil (Tue Sep 16 2008 - 22:26:17 CDT)
- Installing VMD on Fedora Neelanjana Sengupta (Tue Sep 16 2008 - 08:25:54 CDT)
- parallel VMD Benjamin Stauch (Tue Sep 16 2008 - 07:47:16 CDT)
- electrostatic potential Raluca Mihaela ANDREI (Tue Sep 16 2008 - 03:28:02 CDT)
- Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- Re: electrostatic potential John Stone (Sat Sep 20 2008 - 02:19:15 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Wed Sep 24 2008 - 10:46:54 CDT)
- Re: electrostatic potential John Stone (Wed Sep 24 2008 - 10:50:29 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Fri Sep 26 2008 - 09:38:52 CDT)
- Re: electrostatic potential John Stone (Mon Sep 29 2008 - 16:57:39 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- extract centers et radii of beads model Matthieu Chavent (Mon Sep 15 2008 - 13:25:13 CDT)
- Fwd: ACS awards John Stone (Mon Sep 15 2008 - 12:53:34 CDT)
- Tachyon render and Tcl scripting Shay Amram (Mon Sep 15 2008 - 11:42:00 CDT)
- How to ionize a Shape Based CG Model? Anirban Ghosh (Mon Sep 15 2008 - 08:09:07 CDT)
- Alias histidine residue Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
- a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ? Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
- problems with VMD under linux/64-bit machine Irene Newhouse (Fri Sep 12 2008 - 15:17:56 CDT)
- How to use Inorganic Builder Nd S (Fri Sep 12 2008 - 03:19:12 CDT)
- Rendering problem lillestolen (Thu Sep 11 2008 - 14:16:29 CDT)
- Calculating the torsion angles in nucleic acids mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
- Measure hbonds equivalent in Python interface? Chang, Christopher (Wed Sep 10 2008 - 18:52:43 CDT)
- Volume slice: slice color pontes_at_if.usp.br (Wed Sep 10 2008 - 10:31:55 CDT)
- long bonds Marcelo Carignano (Wed Sep 10 2008 - 07:35:36 CDT)
- problems with autopsf & psfgen Irene Newhouse (Tue Sep 09 2008 - 13:50:10 CDT)
- How to generate more segments? mishacat_at_udm.ru (Tue Sep 09 2008 - 01:30:05 CDT)
- Extensions menu is blank Janet Jacobsen (Mon Sep 08 2008 - 18:46:07 CDT)
- saving charges snoze pa (Mon Sep 08 2008 - 12:14:15 CDT)
- feedback on pc-over-ip technology? Tru Huynh (Mon Sep 08 2008 - 10:40:24 CDT)
- Concerning protein rotation Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
- Superimposition: atomselect for reverse topology guillaume.santini_at_free.fr (Sat Sep 06 2008 - 09:34:52 CDT)
- generate psf structure Rudra Banerjee (Sat Sep 06 2008 - 04:15:25 CDT)
- how to draw the bonds in VMD? Alfred Shaohui Zheng (Sat Sep 06 2008 - 03:07:16 CDT)
- Protein coordinate rotation ianboru_at_email.arizona.edu (Fri Sep 05 2008 - 12:40:48 CDT)
- Running without interface Emily Moore (Thu Sep 04 2008 - 11:29:02 CDT)
- DIHE in topology file politr_at_huji.ac.il (Thu Sep 04 2008 - 02:31:52 CDT)
- CONECT Records in .pdb file - bonds not getting plotted Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
- newbie issues markus mooslechner (Tue Sep 02 2008 - 13:39:19 CDT)
- pbc join Edward Lyman (Tue Sep 02 2008 - 13:34:46 CDT)
- Is position dependent color possible? Suman Chakrabarty (Tue Sep 02 2008 - 12:17:59 CDT)
- Merge psf and pdb max_at_liaad.up.pt (Tue Sep 02 2008 - 04:28:53 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 10:46:07 CDT)
- solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 13:54:47 CDT)
- Re: solvating a water molecule John Stone (Tue Sep 02 2008 - 16:16:49 CDT)
- Re: solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 22:35:50 CDT)
- Re: solvating a water molecule John Stone (Mon Sep 08 2008 - 11:41:45 CDT)
- Re: solvating a water molecule gaurav nandrajog (Tue Sep 09 2008 - 01:01:33 CDT)
- Re: solvating a water molecule John Stone (Tue Sep 09 2008 - 01:48:46 CDT)
- Re: Merge psf and pdb bo liu (Wed Sep 03 2008 - 00:17:13 CDT)
- Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- Py_atomsel.C: invalid conversion Chang, Christopher (Fri Aug 29 2008 - 13:01:04 CDT)
- algorithm for finding center of mass of the side chains in the protein aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
- Calculating pocket volume ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
- TXT program editor Alejandro Ortega (Thu Aug 28 2008 - 14:43:14 CDT)
- Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 17:51:39 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 18:13:01 CDT)
- Re: TXT program editor bo liu (Fri Aug 29 2008 - 03:17:57 CDT)
- Re: TXT program editor Suman Chakrabarty (Fri Aug 29 2008 - 08:38:29 CDT)
- Re: TXT program editor Peter Freddolino (Fri Aug 29 2008 - 09:34:29 CDT)
- Re: TXT program editor L. Michel Espinoza-Fonseca (Fri Aug 29 2008 - 10:58:59 CDT)
- Re: TXT program editor Alejandro Ortega (Fri Aug 29 2008 - 13:11:13 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 15:50:21 CDT)
- Re: TXT program editor Sabuj Pattanayek (Thu Aug 28 2008 - 17:03:11 CDT)
- Re: namd-l: TXT program editor Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
- Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
- diffusion coefficient from rmsd Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
- HOLE PROGRAM Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
- catDCD Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
- segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
- Failure to open PDB files hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
- resid of water that is hydrogen bonded nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
- measure gofr - how is g(r) normalised? Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
- Python callbacks in VMD James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
- Inorganic Builder Plugin max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
- Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 12:21:11 CDT)
- how to call dssp in a script Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
- Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
- RMSD SCRIPT Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
- LAMMPS Trajectory Bond Specification nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
- axes Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
- renumbering residues Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
- label all residues Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
- catDCD- convert DCD format Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
- protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
- rmsd Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
- problem controlling orientation of the simulation box drawn by pbctools shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
- save selected residues bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
- backbone dihedral angles over trajectory Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
- request ability to append in CatDCD (and NAMD) Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
- Depth Cueing and dispdev none Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
- VMD files to SDF max_at_liaad.up.pt (Thu Aug 07 2008 - 05:20:59 CDT)
- Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
- NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
- How to reduce memory usage of a script? David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
- How to embed 3-D image into powerpoint Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
- suggested video card for linux Burcin Temel (Mon Aug 04 2008 - 07:32:03 CDT)
- SURF and broken surface Vivek Sharma (Fri Aug 01 2008 - 23:16:14 CDT)
- ionize with VMD a TOP file rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
- vmd-rmsd-color-tool Bernhard Knapp (Fri Aug 01 2008 - 02:27:48 CDT)
- Re: namdenergy and simulation with amber ff Alan (Fri Aug 01 2008 - 02:05:23 CDT)
- problem using pbc wrap: broken molecule Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
- Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
- VMD crasch Lixia Jin Day (Thu Jul 31 2008 - 15:58:28 CDT)
- VMD with amber rst7 and parm7 files Alan (Thu Jul 31 2008 - 03:26:33 CDT)
- Hot repl1ca w4tches from 2008 Villa Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
- How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
- g(r) Rudra Banerjee (Wed Jul 30 2008 - 12:13:40 CDT)
- 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
- tcl script problem with "atomselect' combined with "measure fit ...order" Loison Claire (Tue Jul 29 2008 - 09:16:36 CDT)
- Query Kaur, Tarandeep (Tue Jul 29 2008 - 07:55:49 CDT)
- Multiseq refusing to load a structure due to taxonomy problem Robison, Keith (Tue Jul 29 2008 - 08:22:24 CDT)
- periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:46:09 CDT)
- Re: periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
- solvating protein, fixed residue Rudra Banerjee (Mon Jul 28 2008 - 13:01:56 CDT)
- water box...density!!! Rudra Banerjee (Mon Jul 28 2008 - 05:02:55 CDT)
- solvation and box size Sue Legge (Mon Jul 28 2008 - 01:25:43 CDT)
- translation/transformation Roman Petrenko (Sat Jul 26 2008 - 23:31:36 CDT)
- how to create dityrosine links Roman Petrenko (Sat Jul 26 2008 - 17:47:52 CDT)
- Python for OS X Hans Martin Senn (Fri Jul 25 2008 - 10:19:38 CDT)
- question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Margaret S. Cheung (Fri Jul 25 2008 - 08:38:20 CDT)
- Slow mail deliver for next day or so... John Stone (Fri Jul 25 2008 - 15:15:09 CDT)
- membrane plugin | lipid structures Jufang Shan (Fri Jul 25 2008 - 11:50:18 CDT)
- Get your w4tch now Villa Joan Winslow (Thu Jul 24 2008 - 04:40:10 CDT)
- questions relating to VolMapTool bo liu (Wed Jul 23 2008 - 02:35:18 CDT)
- rdf for big systems Valeria Molinero (Tue Jul 22 2008 - 16:23:04 CDT)
- vecsub command Katherine Parra (Tue Jul 22 2008 - 11:03:42 CDT)
- Selecting the sides of a benzene ring Ignacio Fern醤dez Galv醤 (Tue Jul 22 2008 - 06:30:21 CDT)
- Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fern醤dez Galv醤 (Wed Jul 23 2008 - 02:39:23 CDT)
- Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
- Re: Selecting the sides of a benzene ring John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fern醤dez Galv醤 (Wed Jul 30 2008 - 02:24:58 CDT)
- Re: Selecting the sides of a benzene ring John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fern醤dez Galv醤 (Wed Jul 23 2008 - 02:39:23 CDT)
- Re: Selecting the sides of a benzene ring Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
- Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
- Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
- Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
- Re: Problem to find the number of frames of a trajectory John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
- Periodic image and transformation matrix Cesar Avila (Mon Jul 21 2008 - 19:20:06 CDT)
- Missing angles and dihedrals Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
- You can s4ve 80% Villa Norberto Martinez (Mon Jul 21 2008 - 01:18:56 CDT)
- Selecting atoms that have real SASA greater than 0, Not using "Surface" Christopher Gillespie (Sun Jul 20 2008 - 16:28:04 CDT)
- Parametrization of hydrogen sulfide Raul Araya (Fri Jul 18 2008 - 17:54:45 CDT)
- real coordinates Maria Sanchez Farran (Thu Jul 17 2008 - 21:40:46 CDT)
- vmd MacOSX using dispdev Brian Kidd (Thu Jul 17 2008 - 18:08:03 CDT)
- autopsf from console brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
- VMD Does not start on my MacBook Dr. Seth Olsen (Wed Jul 16 2008 - 21:15:57 CDT)
- Tetrahedral representation FX (Wed Jul 16 2008 - 17:20:22 CDT)
- Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
- Creating a VMD movie from a Tcl script Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Problem writing trajectory to "crd" (Amber) format? Ian (Wed Jul 16 2008 - 04:43:24 CDT)
- Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
- problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 12:50:58 CDT)
- Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:39:06 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:44:13 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:53:54 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:21:57 CDT)
- Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- pick atom id script Abu Naser (Fri Jul 11 2008 - 06:07:05 CDT)
- purple bacteria and psfgen brosbam_at_berkeley.edu (Tue Jul 15 2008 - 12:37:30 CDT)
- Fwd: PDB Bonds versus "distance" bonds Sergey Ivanov (Tue Jul 15 2008 - 10:49:43 CDT)
- Visualizing History file from DL_POLY mahesh naalla (Mon Jul 14 2008 - 11:43:43 CDT)
- tachyon rendering on black background figure Lixia Jin Day (Fri Jul 11 2008 - 13:06:30 CDT)
- QR factorization for structural alignment Dong Xu (Thu Jul 10 2008 - 17:30:39 CDT)
- (no subject) Abu Naser (Thu Jul 10 2008 - 10:43:17 CDT)
- building an uncoming sulfide bridge Jim Pfaendtner (Thu Jul 10 2008 - 08:56:32 CDT)
- contour plots Aaron.Oakley_at_csiro.au (Wed Jul 09 2008 - 22:50:54 CDT)
- Inorganic Builder Plugin Renata KWIECIEN (Wed Jul 09 2008 - 02:56:17 CDT)
- I'm back.. John Stone (Tue Jul 08 2008 - 16:24:12 CDT)
- measure forces applied on VMD S.K. Ghosh (Mon Jul 07 2008 - 16:18:17 CDT)
- trajectory to xyz file. Katherine Parra (Mon Jul 07 2008 - 13:16:30 CDT)
- Newbie Questions Paul Dennis Simonson (Sun Jul 06 2008 - 21:15:13 CDT)
- QR factorization for structural alignment Dong Xu (Sat Jul 05 2008 - 17:06:29 CDT)
- Maximum velocities Alejandro Ortega (Thu Jul 03 2008 - 16:03:13 CDT)
- Dihedrale angles in VMD Jorgen Simonsen (Thu Jul 03 2008 - 07:43:07 CDT)
- Loading Problem hirdesh kumar (Thu Jul 03 2008 - 06:27:44 CDT)
- ResdueType and hydrophobicity scale Giovanni Bellesia (Wed Jul 02 2008 - 18:16:29 CDT)
- The maximal size which can be displayed by VMD? Fred (Rui FENG) (Wed Jul 02 2008 - 16:06:18 CDT)
- VMD Mutator, which side chain rotamer? S. Jamal Rahi (Wed Jul 02 2008 - 07:30:32 CDT)
- VMD Mutator, which side chain rotamer? S. Jamal Rahi (Wed Jul 02 2008 - 07:20:52 CDT)
- VMDMODULATERIBBON or sausage representation Tim Meyer (Tue Jul 01 2008 - 13:38:28 CDT)
- rmsd per residue Alberto Sergio Garay (Tue Jul 01 2008 - 05:36:46 CDT)
- rmsd per residue Michal Kolinski (Mon Jun 30 2008 - 10:19:40 CDT)
- Error using namdstat.tcl script S.K. Ghosh (Mon Jun 30 2008 - 10:51:20 CDT)
- Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd James Irving (Sun Jun 29 2008 - 21:14:14 CDT)
- Problem of Movie Maker Plugin lei wang (Sat Jun 28 2008 - 05:41:29 CDT)
- mutate by D-residues... Yasser Almeida Hern醤dez (Fri Jun 27 2008 - 16:45:00 CDT)
- mutate by D-residues... Yasser Almeida Hern醤dez (Fri Jun 27 2008 - 16:44:25 CDT)
- select cylindrical slab dimka (Fri Jun 27 2008 - 12:08:41 CDT)
- Compiling from source on Mac OS X 10.5 Marylou Kunkle (Fri Jun 27 2008 - 11:12:37 CDT)
- vmd shuts itself down A D (Thu Jun 26 2008 - 19:20:58 CDT)
- how to make a movie of 2 or more trajectories parth singh (Thu Jun 26 2008 - 15:59:08 CDT)
- How to delete anwanted waters in a special area ? Leonhard Henkes (Wed Jun 25 2008 - 07:31:10 CDT)
- On solvate plugin S.K. Ghosh (Mon Jun 23 2008 - 07:22:06 CDT)
- On solvate plugin S.K. Ghosh (Mon Jun 23 2008 - 07:23:00 CDT)
- How to visualize iron and chlorine properly. wangyong_at_dicp.ac.cn (Mon Jun 23 2008 - 19:44:35 CDT)
- Inquiry concerning the plugin "Inorganic builder" Anneta Tzampazi (Mon Jun 23 2008 - 05:23:46 CDT)
- how to export into postscript with MultiPlot in tcl mode? Sebastian Stolzenberg (Sun Jun 22 2008 - 19:01:53 CDT)
- vmd/vista32b/zalman M220 stereo? Michael Galloway (Fri Jun 20 2008 - 16:03:46 CDT)
- enantiomers Ed Lowe (Fri Jun 20 2008 - 08:38:06 CDT)
- Volume slice color scale Ignacio Fern醤dez Galv醤 (Fri Jun 20 2008 - 04:15:39 CDT)
- SpaceNavigator test builds (last note before I go offline!) John Stone (Fri Jun 20 2008 - 02:04:50 CDT)
- Away from VMD-L/email until July 8th... John Stone (Thu Jun 19 2008 - 19:50:06 CDT)
- Discrepancy between colours when coloured by timestep and Tachyon rendered Tim Carpenter (Thu Jun 19 2008 - 12:48:40 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:25:49 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered Tim Carpenter (Thu Jun 19 2008 - 13:52:30 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:54:40 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
- Print and save DLPOLY HISTORY plots mahesh naalla (Thu Jun 19 2008 - 12:15:50 CDT)
- displaying hydrogen bonds when hydrogens are not available Y. U. Sasidhar (Thu Jun 19 2008 - 07:34:23 CDT)
- Labelling Coordinates (not Atoms) Anthony Ivetac (Wed Jun 18 2008 - 17:52:09 CDT)
- IED Vahdati N. (Wed Jun 18 2008 - 10:26:37 CDT)
- PSF works in NAMD but not in VMD Esben A. Gad (Wed Jun 18 2008 - 03:17:04 CDT)
- Re: PSF works in NAMD but not in VMD Peter Freddolino (Wed Jun 18 2008 - 06:53:50 CDT)
- Re: PSF works in NAMD but not in VMD Esben A. Gad (Fri Jun 20 2008 - 06:05:22 CDT)
- Re: Re: PSF works in NAMD but not in VMD Peter Freddolino (Fri Jun 20 2008 - 08:04:24 CDT)
- Re: Re: PSF works in NAMD but not in VMD Axel Kohlmeyer (Fri Jun 20 2008 - 09:57:37 CDT)
- Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Mon Jun 23 2008 - 07:20:08 CDT)
- Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Tue Jun 24 2008 - 03:08:07 CDT)
- Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Wed Jun 25 2008 - 06:42:53 CDT)
- specify a rtf file when generating a psf file. Nicolas Sapay (Tue Jun 17 2008 - 13:46:22 CDT)
- render "color by volume" Gerald Mathias (Tue Jun 17 2008 - 13:27:15 CDT)
- opening gromacs .gro file gives warning messsage and does not display the molecule jake wernik (Mon Jun 16 2008 - 20:19:52 CDT)
- Drawing a line between two atoms Marx Gomes Van der Linden (Mon Jun 16 2008 - 17:10:12 CDT)
- Question: Too many arguments Leonhard Henkes (Mon Jun 16 2008 - 08:24:15 CDT)
- problem with namdstats.tcl sudipta sinha (Sun Jun 15 2008 - 01:51:11 CDT)
- Electrostatic - PMEpot daniel aguayo (Fri Jun 13 2008 - 12:23:22 CDT)
- About occupancy volume maps Ignacio Fern醤dez Galv醤 (Fri Jun 13 2008 - 05:40:17 CDT)
- User defined charges with PMEpot Nicolas Sapay (Thu Jun 12 2008 - 18:24:57 CDT)
- Re: vmd-l digest V1 #1086 Ibrahim Moustafa (Wed Jun 11 2008 - 11:27:48 CDT)
- import QM single point calculation Tim Werner (Wed Jun 11 2008 - 04:27:02 CDT)
- problem loading trajectory in VMD under windows XP Aaron.Oakley_at_csiro.au (Tue Jun 10 2008 - 18:41:24 CDT)
- Spring quality watches offer Estela Gibbs (Tue Jun 10 2008 - 18:50:16 CDT)
- Image rendering using pov-ray Dong Xu (Mon Jun 09 2008 - 20:35:55 CDT)
- psf generation of circular proteins Rabab Toubar (Sun Jun 08 2008 - 09:36:00 CDT)
- Dipole moment? Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 07:21:55 CDT)
- Total list of Tcl features Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 00:15:05 CDT)
- Watches for him, her and you Penny Boyle (Fri Jun 06 2008 - 19:47:03 CDT)
- Solvation Katherine Parra (Fri Jun 06 2008 - 08:56:31 CDT)
- Solvation of a molecule Katherine Parra (Thu Jun 05 2008 - 08:15:41 CDT)
- speed of movie gurpreet singh (Thu Jun 05 2008 - 05:40:55 CDT)
- Long file paths in Mac OS 10.5.3 Kevin DeMarco (Wed Jun 04 2008 - 15:24:51 CDT)
- psf file Katherine Parra (Tue Jun 03 2008 - 11:47:43 CDT)
- Batch mode on Mac OS 10.5.3 Benjamin Hall (Tue Jun 03 2008 - 05:16:52 CDT)
- Create atom selection from list of integers Claw Isthelaw (Mon Jun 02 2008 - 11:01:49 CDT)
- Postdoc position available... John Stone (Sat May 31 2008 - 01:06:59 CDT)
- measure hbonds problem politr_at_huji.ac.il (Fri May 30 2008 - 10:59:28 CDT)
- hydrogen bonds politr_at_huji.ac.il (Fri May 30 2008 - 06:05:12 CDT)
- silly rmsd script doesn' t work ... andrea spitaleri (Fri May 30 2008 - 07:17:16 CDT)
- preriodic box problem Matthieu Chavent (Fri May 30 2008 - 04:12:31 CDT)
- Exceeded maximum number of bonds Demian Riccardi (Thu May 29 2008 - 13:18:09 CDT)
- vmd_init Paul Schlesinger (Wed May 28 2008 - 18:25:38 CDT)
- Re: [lammps-users] MDAnalysis (slightly OT) Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
- errors with using surf and MSMS representations Yinglong Miao (Tue May 27 2008 - 14:53:54 CDT)
- IMD per TCL Stephan Frickenhaus (Tue May 27 2008 - 02:06:34 CDT)
- Label on Movie Wei Huang (Mon May 26 2008 - 10:26:30 CDT)
- mass weighted rms fit Dong Xu (Sun May 25 2008 - 11:14:47 CDT)
- How to discard certain atoms politr_at_huji.ac.il (Sun May 25 2008 - 05:50:43 CDT)
- Measure gofr with large DCD files (Possibly use bigdcd ???) Christopher Gillespie (Fri May 23 2008 - 18:43:22 CDT)
- Movies using Cygwin's ImageMagick? Gustavo Seabra (Thu May 22 2008 - 09:18:45 CDT)
- Crystal water INPE (Ingrid Viveka Pettersson) (Thu May 22 2008 - 04:32:59 CDT)
- scale trajectory coords Peter Jones (Wed May 21 2008 - 22:28:35 CDT)
- (no subject) paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
- Several molecules paquotau_at_loria.fr (Tue May 20 2008 - 10:17:18 CDT)
- Using NAMD Energy Plugin S.K. Ghosh (Tue May 20 2008 - 07:18:35 CDT)
- plot residues without hydrogen atoms ABEL Stephane 175950 (Tue May 20 2008 - 07:02:41 CDT)
- Re: [vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle] Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
- Color of bond betwen atoms with different colors Alberto Torres (Fri May 16 2008 - 15:35:40 CDT)
- Slow tcl/tk script for trajectory analysis Alberto Sergio Garay (Fri May 16 2008 - 14:34:40 CDT)
- Draw in a new layer problems Nuno Sousa Cerqueira (Fri May 16 2008 - 08:36:58 CDT)
- How to calculate the volume of a molecule using vmd? Khaled Barakat (Thu May 15 2008 - 22:17:36 CDT)
- Truncated Octahedron for VMD and NAMD simulation Yinglong Miao (Thu May 15 2008 - 14:31:48 CDT)
- Info regarding residue based CG simulation anshudx_at_indiatimes.com (Thu May 15 2008 - 13:04:11 CDT)
- Re: namd-l: Energy plot script Subramanian Vaitheeswaran (Thu May 15 2008 - 07:28:20 CDT)
- Energy plot script Alexandre A. Vakhrouchev (Wed May 14 2008 - 22:11:19 CDT)
- Individual atoms trajectory Alexandre A. Vakhrouchev (Wed May 14 2008 - 00:34:38 CDT)
- membrane builder ffavela_at_fis.cinvestav.mx (Tue May 13 2008 - 17:30:57 CDT)
- Bond lengths from PDB and PSF Andrew Huang (Mon May 12 2008 - 16:36:18 CDT)
- coloring according to charge of residues OZGE ENGIN (Mon May 12 2008 - 10:05:33 CDT)
- 'within' command in VMD Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
- Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sat May 10 2008 - 07:36:43 CDT)
- Re: Recompile VMD with larger index types John Stone (Sat May 10 2008 - 10:24:43 CDT)
- Re: Recompile VMD with larger index types Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
- NewCartoons / STRIDE problem Samuel Coulbourn Flores 鑺卞北 (Sat May 10 2008 - 18:16:21 CDT)
- Re: NewCartoons / STRIDE problem John Stone (Fri May 16 2008 - 14:55:56 CDT)
- Re: NewCartoons / STRIDE problem Samuel Coulbourn Flores 鑺卞北 (Fri May 16 2008 - 16:06:17 CDT)
- Re: Recompile VMD with larger index types John Stone (Sun May 11 2008 - 00:48:35 CDT)
- Re: Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sun May 11 2008 - 11:20:47 CDT)
- Re: Recompile VMD with larger index types Axel Kohlmeyer (Sun May 11 2008 - 11:18:17 CDT)
- Re: Recompile VMD with larger index types Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
- Re: Recompile VMD with larger index types John Stone (Mon Jun 11 2018 - 10:10:57 CDT)
- Re: Recompile VMD with larger index types John Stone (Sat May 10 2008 - 10:24:43 CDT)
- Charge State Confusion MIke S (Thu May 08 2008 - 22:17:33 CDT)
- about measure dihedral angle cong chen (Thu May 08 2008 - 20:53:08 CDT)
- measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 15:52:47 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 16:59:55 CDT)
- Re: measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 23:08:22 CDT)
- Re: measure sasa gives different results on different platforms Jufang Shan (Thu May 08 2008 - 11:26:38 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Thu May 08 2008 - 11:39:07 CDT)
- Re: measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 16:59:55 CDT)
- bigdcd v2.0 testers needed... Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
- running vmd as pbs job zhenlong li (Tue May 06 2008 - 14:40:44 CDT)
- Writepdb with Solvation Box Alejandro Ortega (Tue May 06 2008 - 12:50:23 CDT)
- NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled Ghalib Bello (Mon May 05 2008 - 23:02:45 CDT)
- question related to rmsd snoze pa (Mon May 05 2008 - 15:03:07 CDT)
- Vmd too slow on Suse10.x cgji (Mon May 05 2008 - 08:20:47 CDT)
- The discreet replica store Greta Bush (Mon May 05 2008 - 01:28:30 CDT)
- about writepdb cong chen (Mon May 05 2008 - 00:08:53 CDT)
- Get one of these awesome replicas Rolando Carlson (Sun May 04 2008 - 12:10:27 CDT)
- Replica watches make great gifts Edwina Grove (Sun May 04 2008 - 01:24:11 CDT)
- The affordable watch alternative Ariel Mitchell (Fri May 02 2008 - 20:35:12 CDT)
- a common list problem Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
- Get one of these awesome replicas Melanie Mcmahon (Fri May 02 2008 - 01:05:03 CDT)
- Rendering electrostatic surface potentials using Tachyon Jason Winget (Thu May 01 2008 - 15:39:31 CDT)
- One of a kind replicas Richard Stone (Thu May 01 2008 - 11:18:31 CDT)
- Watches made to impress Clinton Sylvester (Thu May 01 2008 - 10:40:03 CDT)
- Measuring fit exclusively in 1 plane Benjamin Hall (Thu May 01 2008 - 04:59:04 CDT)
- Why get an original watch? Leticia Larkin (Wed Apr 30 2008 - 20:14:01 CDT)
- Impressive Glashutte timepieces! Lorena Shipley (Wed Apr 30 2008 - 08:35:35 CDT)
- Spring quality watches offer Bertie Earl (Tue Apr 29 2008 - 19:30:10 CDT)
- creating psf from pgn S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
- Beginner with cyclic peptide Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
- Rolex replica is a ultimate gift Jimmie Corona (Tue Apr 29 2008 - 08:25:38 CDT)
- clarification to "problem using pbc wrap" politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
- problem using pbc wrap politr_at_huji.ac.il (Tue Apr 29 2008 - 05:52:09 CDT)
- (no subject) politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
- Spring quality watches offer Bryce Vang (Mon Apr 28 2008 - 12:56:22 CDT)
- Hot replica watches from 2008 Rudy Puckett (Sun Apr 27 2008 - 14:53:15 CDT)
- Re: namd-l: How to play molecule trajectory with VMD? Regina Politi (Sun Apr 27 2008 - 07:15:22 CDT)
- Replica watch is a perfect gift Christian Courtney (Sun Apr 27 2008 - 04:18:34 CDT)
- Replica watch is a perfect gift Murray Dyer (Sat Apr 26 2008 - 17:18:11 CDT)
- Can not enter text in VMD plugin window Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
- Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 15:12:19 CDT)
- Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 10:19:52 CDT)
- You can save 80% Arturo Fernandez (Fri Apr 25 2008 - 05:58:21 CDT)
- Get one of these awesome replicas Jerry Kiser (Thu Apr 24 2008 - 18:45:18 CDT)
- problem with "within" command of VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 08:22:23 CDT)
- viewing pca output Bala subramanian (Thu Apr 24 2008 - 08:09:43 CDT)
- Inexpensive Louis Vuitton bags Buford Granger (Thu Apr 24 2008 - 09:03:05 CDT)
- resolution screen in Linux andrea spitaleri (Thu Apr 24 2008 - 07:33:24 CDT)
- how to identify DNA-protein interaction interface BERGY (Thu Apr 24 2008 - 05:42:53 CDT)
- problem while running VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 03:31:22 CDT)
- problem while running VMD Regina Politi (Thu Apr 24 2008 - 03:30:19 CDT)
- One of a kind replicas Erin Ziegler (Wed Apr 23 2008 - 21:53:24 CDT)
- Rendering Labels with Tachyon Anthony Ivetac (Wed Apr 23 2008 - 18:18:33 CDT)
- Re: Rendering Labels with Tachyon John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
- Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
- Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 14:45:02 CDT)
- Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 17:43:08 CDT)
- Re: Rendering Labels with Tachyon Leonardo Trabuco (Thu Apr 24 2008 - 18:13:06 CDT)
- Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 17:29:10 CDT)
- Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
- Re: Rendering Labels with Tachyon John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
- Get your watch now Helena Slater (Wed Apr 23 2008 - 12:17:13 CDT)
- measure distance politr_at_huji.ac.il (Wed Apr 23 2008 - 09:02:41 CDT)
- memorry problem politr_at_huji.ac.il (Wed Apr 23 2008 - 06:48:53 CDT)
- bug in the g(r) evaluation? cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
- alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction? maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
- One of a kind replicas Jane Mayberry (Mon Apr 21 2008 - 07:16:11 CDT)
- Tag Heuer replicas better than originals Errol Lusk (Sun Apr 20 2008 - 18:30:56 CDT)
- Tag Heuer replicas better than originals Corine Brady (Sun Apr 20 2008 - 07:33:41 CDT)
- Tag Heuer replicas better than originals Mona Gomes (Sat Apr 19 2008 - 17:17:44 CDT)
- warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 09:09:32 CDT)
- Re: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 09:21:04 CDT)
- Re: warnings during plugin build John Stone (Sat Apr 19 2008 - 14:46:06 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
- RE: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 18:40:41 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sun Apr 20 2008 - 03:51:17 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sun Apr 20 2008 - 12:37:39 CDT)
- RE: warnings during plugin build Axel Kohlmeyer (Sun Apr 20 2008 - 13:33:29 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Mon Apr 21 2008 - 18:35:21 CDT)
- RE: warnings during plugin build Axel Kohlmeyer (Mon Apr 21 2008 - 18:45:50 CDT)
- Re: warnings during plugin build John Stone (Mon Apr 21 2008 - 19:50:11 CDT)
- Re: warnings during plugin build Vlad Cojocaru (Tue Apr 22 2008 - 03:39:43 CDT)
- Re: warnings during plugin build Axel Kohlmeyer (Tue Apr 22 2008 - 05:39:59 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
- Take a look at the latest replica watches Lillie Lyons (Sat Apr 19 2008 - 07:00:53 CDT)
- Spring quality watches offer Weldon Sylvester (Fri Apr 18 2008 - 18:29:29 CDT)
- RMSD between two structures without the same number of atoms Aurelie.DeLuca_at_sanofi-aventis.com (Fri Apr 18 2008 - 08:08:39 CDT)
- You can save 80% Annabelle Posey (Thu Apr 17 2008 - 17:58:17 CDT)
- PPMTOMPEG Quality Anthony Ivetac (Thu Apr 17 2008 - 14:40:15 CDT)
- Compiled version for MacOSX with non-standard options Delalande (Thu Apr 17 2008 - 08:37:14 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
- Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Fri Apr 18 2008 - 12:55:49 CDT)
- Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 14:21:30 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Wed Apr 23 2008 - 23:45:05 CDT)
- Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
- Replica watch is a perfect gift Deanna Fleming (Thu Apr 17 2008 - 05:25:56 CDT)
- measure hbonds between protein and water - problem with periodic boundary conditions Ana Vila Verde (Thu Apr 17 2008 - 02:54:08 CDT)
- atomselect cong chen (Wed Apr 16 2008 - 19:58:18 CDT)
- Trajectory title Alessandro Cembran (Wed Apr 16 2008 - 07:53:47 CDT)
- You and a Rolex watch Tisha Engle (Wed Apr 16 2008 - 05:16:24 CDT)
- Timer in VMD Lili Peng (Tue Apr 15 2008 - 16:59:28 CDT)
- You and a Rolex watch Althea Lake (Tue Apr 15 2008 - 17:12:00 CDT)
- Example tutorial snoze pa (Mon Apr 14 2008 - 18:38:03 CDT)
- catDCD Raul Araya (Mon Apr 14 2008 - 12:01:41 CDT)
- Spring quality watches offer Grace Clay (Mon Apr 14 2008 - 11:47:27 CDT)
- topology files L/D form Jorgen Simonsen (Mon Apr 14 2008 - 04:50:08 CDT)
- 15% off on two watches Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
- compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 12:24:52 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 15:00:12 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository John Stone (Sun Apr 13 2008 - 15:29:57 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 03:26:35 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 05:16:25 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Mon Apr 14 2008 - 05:16:19 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 05:43:00 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository John Stone (Mon Apr 14 2008 - 10:26:18 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
- Inexpensive Louis Vuitton bags Royce Rosa (Sat Apr 12 2008 - 18:57:58 CDT)
- change residue name and write a trajectory file L. Michel Espinoza-Fonseca (Thu Apr 10 2008 - 17:02:13 CDT)
- Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 15:15:36 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Thu Apr 10 2008 - 17:05:18 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 21:17:08 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Sun Apr 13 2008 - 11:47:03 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Ben Chern (Sun Apr 13 2008 - 20:49:26 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Mon Apr 14 2008 - 10:24:53 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 21:17:08 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Thu Apr 10 2008 - 17:05:18 CDT)
- Join tens of thousands of LUCKY winners today........ Mel Weston (Thu Apr 10 2008 - 05:48:03 CDT)
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- Visualization in 3-D using NVIDIA quaddro Himanshu Khandelia (Wed Apr 09 2008 - 05:27:18 CDT)
- Play at the world's leading online casino..... Ned Roy (Wed Apr 09 2008 - 01:14:11 CDT)
- Displaying nearest images using PBCTools Subramanian Vaitheeswaran (Tue Apr 08 2008 - 15:49:03 CDT)
- some questions about the RDF plugin Raul Araya (Mon Apr 07 2008 - 15:23:32 CDT)
- How to circumvent: FATAL ERROR: Periodic cell has become too small for original patch grid! Maxim Paliy (Mon Apr 07 2008 - 12:36:24 CDT)
- psfgen 999 waters resname X column Low Soo Mei (Mon Apr 07 2008 - 05:31:52 CDT)
- Insall Problem VMD Linux 1.8.6 Part II! Peter Hains (Sun Apr 06 2008 - 23:07:55 CDT)
- Install problem VMD Linux 1.8.6 Peter Hains (Sun Apr 06 2008 - 19:19:15 CDT)
- About Tcl command zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
- How to read specific DCD frames directly in Fortran? Yinglong Miao (Sat Apr 05 2008 - 13:21:53 CDT)
- Re: How to read specific DCD frames directly in Fortran? Peter Freddolino (Sat Apr 05 2008 - 13:38:39 CDT)
- Re: How to read specific DCD frames directly in Fortran? John Stone (Sat Apr 05 2008 - 13:43:21 CDT)
- Re: How to read specific DCD frames directly in Fortran? Axel Kohlmeyer (Sat Apr 05 2008 - 18:08:23 CDT)
- how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 16:27:04 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 16:36:05 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 17:42:08 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 17:59:52 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 25 2008 - 14:18:24 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 25 2008 - 16:07:06 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 25 2008 - 17:09:34 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 17:42:08 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 16:36:05 CDT)
- Topology file Alejandro Ortega (Fri Apr 04 2008 - 11:24:14 CDT)
- 0ne of a kind repl1cas Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
- You can s4ve 80% Sherman Sherman (Wed Apr 02 2008 - 10:10:22 CDT)
- Cannot perform RMSD analysis Maria Sanchez Farran (Wed Apr 02 2008 - 07:49:55 CDT)
- April promo on w4tches Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
- render Dongsheng Zhang (Mon Mar 31 2008 - 15:51:35 CDT)
- using cvs under Windows XP Ben Chern (Mon Mar 31 2008 - 08:31:31 CDT)
- Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 04:13:38 CDT)
- Re: Compiling VMD under Windows XP John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
- Re: Compiling VMD under Windows XP Axel Kohlmeyer (Mon Mar 31 2008 - 21:47:02 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Tue Apr 01 2008 - 01:33:34 CDT)
- Re: Compiling VMD under Windows XP Axel Kohlmeyer (Tue Apr 01 2008 - 06:06:22 CDT)
- Movie Maker skipping Samuel Coulbourn Flores (Tue Apr 01 2008 - 12:38:47 CDT)
- Re: Movie Maker skipping John Stone (Tue Apr 01 2008 - 12:53:13 CDT)
- Re: Movie Maker skipping Samuel Coulbourn Flores (Tue Apr 01 2008 - 13:25:08 CDT)
- Re: Movie Maker skipping John Stone (Tue Apr 01 2008 - 13:37:18 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Tue Apr 01 2008 - 20:26:36 CDT)
- Re: Compiling VMD under Windows XP John Stone (Thu Apr 03 2008 - 00:13:12 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Thu Apr 03 2008 - 07:14:22 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
- Re: Compiling VMD under Windows XP John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
- porcupine plot SWAPNA (Mon Mar 31 2008 - 01:06:36 CDT)
- NAMDenergy: how to override a FATAL ERROR Neelanjana Sengupta (Sun Mar 30 2008 - 14:50:29 CDT)
- Problems with PDB file format in VMD cong chen (Thu Mar 27 2008 - 18:55:38 CDT)
- Tcl 8.5.x in upcoming versions of VMD... John Stone (Thu Mar 27 2008 - 17:19:47 CDT)
- Test VMD with CUDA support for Linux and MacOS X 10.5.2... John Stone (Thu Mar 27 2008 - 17:13:15 CDT)
- Selection "within x of something" is not updated throughout DCD trajectory? Maxim Paliy (Thu Mar 27 2008 - 13:59:25 CDT)
- How to see the original Origin (0,0,0, coordinate) of a system Utpal Sarkar (Thu Mar 27 2008 - 11:20:03 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system Axel Kohlmeyer (Thu Mar 27 2008 - 11:57:58 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system Adrian Kaats (Thu Mar 27 2008 - 15:56:52 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system John Stone (Thu Mar 27 2008 - 16:51:44 CDT)
- Can VMD show the interactions between different structure part? Ben Chern (Wed Mar 26 2008 - 22:20:57 CDT)
- problem with pbc Matt Watkins (Wed Mar 26 2008 - 16:20:55 CDT)
- Can we get secondary structure from PDB files? Ben Chern (Wed Mar 26 2008 - 04:02:04 CDT)
- time correlation function Krishnan, Marimuthu (Tue Mar 25 2008 - 22:44:40 CDT)
- Test cong chen (Tue Mar 25 2008 - 18:39:50 CDT)
- VMD tutorial for working with solid crystals Minhaj (Tue Mar 25 2008 - 03:33:19 CDT)
- script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 17:16:39 CDT)
- Re: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 19:22:30 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 20:07:20 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 19:53:36 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 20:19:06 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 20:07:35 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Tue Mar 25 2008 - 00:11:29 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
- Re: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
- Loading a PDB file with different atom counts in models Adrian Kaats (Fri Mar 21 2008 - 09:19:35 CDT)
- atoms with changing colors Simone Melchionna (Thu Mar 20 2008 - 16:50:50 CDT)
- atomselect protein Adrian Kaats (Thu Mar 20 2008 - 16:39:54 CDT)
- old VMD post - RE: measuring distances in vmd tkon Simpson, Lisa M (Thu Mar 20 2008 - 12:38:36 CDT)
- GPU test machine Michael Di Domenico (Thu Mar 20 2008 - 11:04:59 CDT)
- running ca-dist.tcl Simpson, Lisa M (Thu Mar 20 2008 - 08:57:47 CDT)
- RMSD calc SENTHIL KUMAR (Thu Mar 20 2008 - 01:11:02 CDT)
- Build a VMD forum? Stanley, Yemin Shi (Wed Mar 19 2008 - 15:49:08 CDT)
- Re: Build a VMD forum? Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
- Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide Axel Kohlmeyer (Wed Mar 19 2008 - 21:07:06 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 21:37:45 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide Axel Kohlmeyer (Wed Mar 19 2008 - 21:52:58 CDT)
- Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
- Re: Build a VMD forum? Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
- Radial Density Jennifer Williams (Wed Mar 19 2008 - 11:12:56 CDT)
- dipole Alessio Alexiadis (Wed Mar 19 2008 - 06:54:21 CDT)
- Display bond breaking Stanley, Yemin Shi (Tue Mar 18 2008 - 22:17:50 CDT)
- DLPOLY HISTORY FILE in VMD Utpal Sarkar (Tue Mar 18 2008 - 11:08:29 CDT)
- Re-create Figures in VMD Images and Movies Tutorial Dong Xu (Mon Mar 17 2008 - 16:17:57 CDT)
- closewater.tcl Irene Newhouse (Mon Mar 17 2008 - 14:48:37 CDT)
- GLSL lost Ignacio Fern醤dez Galv醤 (Mon Mar 17 2008 - 12:17:21 CDT)
- different numbers of frames even though... Christopher Stiles (Fri Mar 14 2008 - 01:49:53 CDT)
- ramaplot ramya narasimhan (Fri Mar 14 2008 - 00:46:30 CDT)
- Does VMD support to draw a velocity field diagram? Fred (Rui FENG) (Thu Mar 13 2008 - 16:26:13 CDT)
- Diffusion Constant joy tehrani (Wed Mar 12 2008 - 17:44:52 CDT)
- Re: about paratool saam (Tue Mar 11 2008 - 11:56:45 CDT)
- Paratools problem with Gaussian Output Nicolas Floquet (Tue Mar 11 2008 - 02:39:05 CDT)
- Using namdenergy without cutoffs? poker_at_physics.usyd.edu.au (Tue Mar 11 2008 - 01:09:20 CDT)
- problem with gopython Carolyn Phillips (Mon Mar 10 2008 - 22:32:05 CDT)
- snapshot not compatible with -dispdev text? Emmanuel Levy (Mon Mar 10 2008 - 17:08:02 CDT)
- Solvent accessible surface area calculation L. Michel Espinoza-Fonseca (Mon Mar 10 2008 - 14:41:08 CDT)
- Automatically zoom so that the protein fill the display Emmanuel Levy (Mon Mar 10 2008 - 13:21:46 CDT)
- Re: Automatically zoom so that the protein fill the display Axel Kohlmeyer (Mon Mar 10 2008 - 13:50:50 CDT)
- pbc join Dongsheng Zhang (Sun Mar 09 2008 - 22:44:32 CDT)
- radial density over one frame Christopher Stiles (Sun Mar 09 2008 - 14:55:51 CDT)
- compile problem for VMD1.8.6: OpenGLRenderer.C Dan Strahs (Sat Mar 08 2008 - 20:17:23 CST)
- calculate volume Dong Xu (Fri Mar 07 2008 - 21:20:40 CST)
- DCD file Alejandro Ortega (Fri Mar 07 2008 - 12:07:23 CST)
- how to make smooth movies ? maria goranovic (Fri Mar 07 2008 - 07:13:53 CST)
- Using RMSDTT in a script and aligning volume data Ignacio Fern醤dez Galv醤 (Fri Mar 07 2008 - 03:35:55 CST)
- H2 bond distances calculation n displaying image SENTHIL KUMAR (Thu Mar 06 2008 - 22:07:18 CST)
- RMSD trajectory Tool joy tehrani (Thu Mar 06 2008 - 06:45:35 CST)
- VMD 3D stereo hardware Alba Colet Subirachs (Thu Mar 06 2008 - 03:16:25 CST)
- complete residues within Leandro Mart韓ez (Thu Mar 06 2008 - 02:20:59 CST)
- TCL/VMD problem Corenflos, Steven Charles (Wed Mar 05 2008 - 11:59:20 CST)
- radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 11:45:31 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
- Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 16:34:14 CST)
- Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 21:26:22 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 21:54:46 CST)
- Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
- running vmd in parallel Michael Kreim (Wed Mar 05 2008 - 11:13:10 CST)
- What's the main reason of the structure or function of a protein? Fei Chen (Wed Mar 05 2008 - 07:53:18 CST)
- about paratool laura (Wed Mar 05 2008 - 02:33:41 CST)
- Visualizing trajectory with changing atoms Suman Chakrabarty (Tue Mar 04 2008 - 15:19:58 CST)
- VMD languaje information Alba Colet Subirachs (Tue Mar 04 2008 - 10:24:09 CST)
- [carlos.simmerling@gmail.com: ACS awards] John Stone (Mon Mar 03 2008 - 20:11:56 CST)
- VS: average area per lipid Bo H鴍en Justensen (Mon Mar 03 2008 - 15:10:09 CST)
- average area per lipid Stephen Dutz (Mon Mar 03 2008 - 11:14:11 CST)
- missing basic tutorials for VMD scripting? massimo camarda (Sat Mar 01 2008 - 03:02:49 CST)
- unusual bond between the cysteine and arginine residue during the simulation OZGE ENGIN (Fri Feb 29 2008 - 13:30:01 CST)
- no convergence in align Jorgen Simonsen (Fri Feb 29 2008 - 07:03:18 CST)
- Re: Cluster plugin and Gromacs g_cluster OZGE ENGIN (Wed Feb 27 2008 - 07:21:15 CST)
- periodic images for trajectory Jennifer Williams (Wed Feb 27 2008 - 04:18:56 CST)
- Compute force between two atoms Chen Fei (Tue Feb 26 2008 - 20:28:22 CST)
- more on lammps and VMD coordinates Arienti, Marco UTRC (Tue Feb 26 2008 - 11:18:37 CST)
- control drawing method Myunggi Yi (Mon Feb 25 2008 - 13:26:33 CST)
- How to get rubber-like surface with Tachyon renderer Alexander Metz (Mon Feb 25 2008 - 09:37:02 CST)
- specify the bonds between the atoms massimo camarda (Mon Feb 25 2008 - 01:48:52 CST)
- measure binding site SASA Dong Xu (Sun Feb 24 2008 - 12:38:49 CST)
- Changing a structure of macromolecule with VMD fouchni_at_uni-osnabrueck.de (Sun Feb 24 2008 - 08:38:44 CST)
- visualizing disulphide bonds OZGE ENGIN (Sun Feb 24 2008 - 04:31:18 CST)
- Ramachandran plot tcl script Anthony Samiotakis (Sat Feb 23 2008 - 15:54:50 CST)
- vmd snapshots without display Thomas C. Bishop (Fri Feb 22 2008 - 10:59:50 CST)
- Residue replacement question] fouchni_at_uni-osnabrueck.de (Fri Feb 22 2008 - 04:20:04 CST)
- movie generation without runtime frame show massimo camarda (Fri Feb 22 2008 - 04:15:58 CST)
- monitor helicity change Jufang Shan (Thu Feb 21 2008 - 19:06:14 CST)
- defining bonds Thomas C. Bishop (Thu Feb 21 2008 - 14:47:15 CST)
- VASP CHGCAR Wesley Smith (Thu Feb 21 2008 - 14:12:05 CST)
- couldn't fork child process: not enough memory jrui_at_ci.uc.pt (Thu Feb 21 2008 - 13:47:06 CST)
- couldn't open "c:/multiseq-406080740227.start.domain": invalid argument Maurice O'Connell (Thu Feb 21 2008 - 12:30:26 CST)
- gromacs trajectory files maria goranovic (Thu Feb 21 2008 - 04:18:17 CST)
- Selection in VMD Graphical representation Pavan Ghatty (Wed Feb 20 2008 - 10:22:03 CST)
- Residue replacement question fouchni_at_uni-osnabrueck.de (Wed Feb 20 2008 - 04:15:33 CST)
- spacial distribution function L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:52:15 CST)
- how to set molinfo from python Jorgen Simonsen (Tue Feb 19 2008 - 02:03:16 CST)
- tcl script memory problem - NOT in atomselect Johannes M黮legger (Mon Feb 18 2008 - 21:45:42 CST)
- change axes name massimo camarda (Mon Feb 18 2008 - 11:57:35 CST)
- VMD limitation for loading large trajectory file Dong Xu (Fri Feb 15 2008 - 16:48:45 CST)
- Unable to see VDW , CPK representations Arnab Chakrabarty (Fri Feb 15 2008 - 16:25:23 CST)
- display of periodic DCD information Thomas C. Bishop (Thu Feb 14 2008 - 14:15:15 CST)
- Volume data formats Ignacio Fern醤dez Galv醤 (Thu Feb 14 2008 - 11:58:40 CST)
- rmsd different from rmsd implemented in VMD Jorgen Simonsen (Wed Feb 13 2008 - 10:18:19 CST)
- PSFGEN::: ERROR: failed on end of segment Dibyadeep Paul (Wed Feb 13 2008 - 03:38:14 CST)
- Improved VMD performance on MacOSX 10.5.2 Christoph Weber (Tue Feb 12 2008 - 16:51:14 CST)
- FieldLines Mary Karpen (Tue Feb 12 2008 - 07:34:42 CST)
- variables from VMD to psfgen Thomas C. Bishop (Mon Feb 11 2008 - 17:28:12 CST)
- measure SASA L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 17:48:12 CST)
- namd energy plugin L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 15:44:04 CST)
- the script do not update the frame number for secondary structure analysis OZGE ENGIN (Sun Feb 10 2008 - 05:18:46 CST)
- Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 03:10:25 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis OZGE ENGIN (Mon Feb 11 2008 - 04:01:15 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 04:55:39 CST)
- Hinge calculation in MD trajectory using Hingefind plug-in Jorge Hernandez Fernandez (Mon Feb 11 2008 - 13:02:59 CST)
- Re: Hinge calculation in MD trajectory using Hingefind plug-in John Stone (Fri Feb 15 2008 - 15:40:29 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis OZGE ENGIN (Mon Feb 11 2008 - 04:01:15 CST)
- Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 03:10:25 CST)
- the script do not update the frame for secondary structure analysis OZGE ENGIN (Sun Feb 10 2008 - 04:13:03 CST)
- ssrecalc output for the whole trajectory OZGE ENGIN (Sat Feb 09 2008 - 08:28:02 CST)
- output of the ssrecalc command OZGE ENGIN (Fri Feb 08 2008 - 14:01:45 CST)
- installation problem vmd 1.8.6 on fedora 3 kinshuk_at_chem.iitb.ac.in (Fri Feb 08 2008 - 00:15:50 CST)
- heuristic bond computation Tony Sheh (Thu Feb 07 2008 - 21:58:15 CST)
- SASA calculation (protein + small molecules) Manali Mehendale (Thu Feb 07 2008 - 14:45:37 CST)
- merge pdb Lucie Huynh (Wed Feb 06 2008 - 10:29:58 CST)
- vmd maxAtom C L Freeman (Wed Feb 06 2008 - 10:10:30 CST)
- help with animate read command Jim Pfaendtner (Tue Feb 05 2008 - 11:26:47 CST)
- namd help? Corenflos, Steven Charles (Tue Feb 05 2008 - 12:15:47 CST)
- About Cluster Plug-in OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
- Displaying Counter Alongside Animation Adrian Koh (Tue Feb 05 2008 - 00:20:36 CST)
- VMD, NAMDenergy & AMBER parameters Irene Newhouse (Mon Feb 04 2008 - 17:23:37 CST)
- To create Tetramer Swarna Patra (Mon Feb 04 2008 - 16:42:52 CST)
- Question about geometrical figures Felix Rodrigues Gulias (Fri Feb 01 2008 - 11:03:42 CST)
- question about 'measure bond' MW Van der Kamp, School of Chemistry (Fri Feb 01 2008 - 09:21:20 CST)
- Rdf from a specific point Robert Coridan (Fri Feb 01 2008 - 06:12:42 CST)
- animation of an atom diffusion inside a bulk crystal massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
- sausage view of NMR ensembles dimka (Thu Jan 31 2008 - 23:10:59 CST)
- Percentage Helicity calculation in VMD aneesh cna (Thu Jan 31 2008 - 22:54:53 CST)
- problems with MDenergy Irene Newhouse (Wed Jan 30 2008 - 15:06:49 CST)
- Mutate nucleotides Maurizio Olla (Tue Jan 29 2008 - 23:51:05 CST)
- Sasa script in python returns "Runtime error" Per Jr. Greisen (Tue Jan 29 2008 - 09:53:59 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
- Re: Sasa script in python returns "Runtime error" Per Jr. Greisen (Wed Jan 30 2008 - 10:13:38 CST)
- Re: Sasa script in python returns "Runtime error" John Stone (Wed Jan 30 2008 - 10:26:18 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 10:28:57 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 10:24:55 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
- (no subject) mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
- 'gopython' Tkinter and Numeric Python error brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
- (no subject) Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
- where is the "move" procedure in the toturial Justin JEONG (Sun Jan 27 2008 - 16:32:03 CST)
- VMD 1.8.6, XTC format on Mac OS X 10.5.1 Tony Sheh (Sat Jan 26 2008 - 11:56:01 CST)
- re: script hangs when use full dcd file Irene Newhouse (Fri Jan 25 2008 - 14:14:53 CST)
- problem with timeline plugin aneesh cna (Fri Jan 25 2008 - 00:12:17 CST)
- MSVC Projects Corrupt and Missing Wesley Smith (Thu Jan 24 2008 - 22:18:09 CST)
- Can VMD visualize forces? Yinglong Miao (Thu Jan 24 2008 - 17:16:14 CST)
- problems with a script Irene Newhouse (Thu Jan 24 2008 - 16:39:40 CST)
- preserving atom index or hexadecimal residue numbers after writepdb Vlad Cojocaru (Thu Jan 24 2008 - 04:44:40 CST)
- minimization command Sourmaidou, Damiani (Wed Jan 23 2008 - 12:35:49 CST)
- proximity of residues Francesco Pietra (Wed Jan 23 2008 - 01:40:51 CST)
- delatom "no segment..." Lucie Huynh (Tue Jan 22 2008 - 05:10:00 CST)
- Inconsistencies in NAMD simulations Chandra Ramananjara (Tue Jan 22 2008 - 02:49:53 CST)
- local urea concentration L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 11:17:14 CST)
- SSE from the protein sequence Lu Lin (Mon Jan 21 2008 - 09:11:49 CST)
- problem with sidechian representation gurpreet singh (Mon Jan 21 2008 - 00:02:37 CST)
- VMD drawing Wesley Smith (Sun Jan 20 2008 - 15:51:06 CST)
- Error in changing on screen options of VMD Monika Sharma (Fri Jan 18 2008 - 07:45:07 CST)
- problem with time line plugin in VMD ABEL Stephane 175950 (Fri Jan 18 2008 - 03:36:30 CST)
- error in loading psf file generated from lammps data file. Dongsheng Zhang (Thu Jan 17 2008 - 16:23:27 CST)
- MSMS plugin for windows Lu Lin (Thu Jan 17 2008 - 08:35:55 CST)
- Could not locate 'dowser' (Program not found message box) Stanley, Yemin Shi (Thu Jan 17 2008 - 07:31:22 CST)
- C NH1 C minimization error Sourmaidou, Damiani (Thu Jan 17 2008 - 06:43:18 CST)
- RMSD with protein ligand Francesco Pietra (Thu Jan 17 2008 - 00:49:37 CST)
- visualizing a simple polymer chain via VMD Sergey Mkrtchyan (Wed Jan 16 2008 - 11:48:16 CST)
- Re: visualizing a simple polymer chain via VMD Axel Kohlmeyer (Wed Jan 16 2008 - 12:26:08 CST)
- Re: visualizing a simple polymer chain via VMD Olaf Lenz (Thu Jan 17 2008 - 01:24:34 CST)
- replace molecule? Lucie Huynh (Wed Jan 16 2008 - 03:09:39 CST)
- problem rendering NewCartoon with tachyon MW Van der Kamp, School of Chemistry (Tue Jan 15 2008 - 03:03:27 CST)
- How to calculate end-to-end distance in VMD? Lili Peng (Mon Jan 14 2008 - 16:37:33 CST)
- how to load a molecule in pdb format and save in mol2 format in batch mode Sridhar Acharya (Mon Jan 14 2008 - 01:32:33 CST)
- Video Card for VMD, 2D or 3D Stanley, Yemin Shi (Fri Jan 11 2008 - 18:30:59 CST)
- Export VMD graphics to POV-Ray Igor Schapiro (Fri Jan 11 2008 - 08:22:13 CST)
- measure contacts script L. Michel Espinoza-Fonseca (Fri Jan 11 2008 - 05:57:10 CST)
- POV-Ray 3.6; VMD Movie Maker; Continuous Render (UNCLASSIFIED) Paul, Kristian (Cont, ARL/WMRD) (Thu Jan 10 2008 - 12:16:16 CST)
- PBC Nazanin Samadi (Thu Jan 10 2008 - 07:19:20 CST)
- problem with superimposing two proteins aneesh cna (Thu Jan 10 2008 - 05:33:21 CST)
- Is there any way to diagonalize a 3x3 matrix in VMD,.......... Sergio (Wed Jan 09 2008 - 13:18:05 CST)
- Re: Link atoms snoze pa (Wed Jan 09 2008 - 10:23:31 CST)
- connectivity problem rams rams (Wed Jan 09 2008 - 08:57:48 CST)
- Link atoms snoze pa (Tue Jan 08 2008 - 18:10:11 CST)
- NAMDEnergy problem Lixia Jin Day (Tue Jan 08 2008 - 14:30:29 CST)
- How to choose part of the volume data for isosurface visualization? Yinglong Miao (Tue Jan 08 2008 - 10:41:02 CST)
- VMD intallation Satyan Sharma (Mon Jan 07 2008 - 12:52:39 CST)
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 Brian Bennion (Mon Jan 07 2008 - 10:58:36 CST)
- X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 Guanglei Cui (Mon Jan 07 2008 - 08:35:14 CST)
- Phantom Omni Haptic Device Martin Held (Sun Jan 06 2008 - 15:00:47 CST)
- Cluster analysis Francesco Pietra (Sun Jan 06 2008 - 04:27:19 CST)
- VMD-L membership pruning, more anti-spam measures.. John Stone (Sat Jan 05 2008 - 00:26:40 CST)
- vmd error message snoze pa (Fri Jan 04 2008 - 12:59:00 CST)
- VMD-L post spam blocking, rescued messages from the last 30 days... John Stone (Fri Jan 04 2008 - 12:33:38 CST)
- VMD movie from XYZ coordinate if file has two type of atoms Anil Kumar (Sun Dec 09 2007 - 22:12:58 CST)
- resolving side chain clashes jayant_jacques (Thu Dec 13 2007 - 14:05:10 CST)
- namd-l: Creating topology for carbon nanotube / any new structure prateeksha s (Tue Dec 18 2007 - 23:10:42 CST)
- VMD on Linux Suse SCIPIONI Roberto (Wed Dec 19 2007 - 01:21:21 CST)
- replication of bilayer Chanda.Jnanojjal_at_edam.uhp-nancy.fr (Wed Dec 26 2007 - 04:08:00 CST)
- installation on suse linux 10.3 s lal badshah (Wed Dec 26 2007 - 23:28:27 CST)
- Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 14:08:31 CST)
- Re: Hydrogens in vmd Peter Freddolino (Thu Jan 03 2008 - 14:25:05 CST)
- Re: Hydrogens in vmd John Stone (Thu Jan 03 2008 - 14:26:16 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 15:30:40 CST)
- Re: Hydrogens in vmd Peter Freddolino (Thu Jan 03 2008 - 15:38:31 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 15:53:31 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 16:15:55 CST)
- Re: Hydrogens in vmd Peter Freddolino (Thu Jan 03 2008 - 16:21:53 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 16:19:05 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 15:30:40 CST)
- Question about Gromacs box size in VMD..... Sergio Garay (Thu Jan 03 2008 - 07:27:37 CST)
- freevr tool transformation Ahmed Nawar (Thu Jan 03 2008 - 00:28:31 CST)
- select atoms between molecules Sampo Karkola (Wed Jan 02 2008 - 06:13:39 CST)
- Selecting water molecules within 5 ang in a trajectory( generated by amber). naga raju (Wed Dec 26 2007 - 01:01:50 CST)
- saltbr plugging problem: too many open files Amaury Pupo Meri駉 (Fri Dec 21 2007 - 09:31:07 CST)
- Viewing molden grid files Ignacio Fern醤dez Galv醤 (Fri Dec 21 2007 - 03:14:46 CST)
- parameter tool tutorial snoze pa (Thu Dec 20 2007 - 17:15:15 CST)
- vmd QMtool snoze pa (Thu Dec 20 2007 - 16:53:34 CST)
- measure hbonds Narender Singh Maan (Mon Dec 17 2007 - 14:52:39 CST)
- Increasing MAXATOMBONDS? Oliver Beckstein (Mon Dec 17 2007 - 13:37:42 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Tue Dec 18 2007 - 12:56:55 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Tue Dec 18 2007 - 16:05:02 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Wed Dec 19 2007 - 20:59:02 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Thu Dec 20 2007 - 15:50:10 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Wed Jan 09 2008 - 01:22:13 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Mon Jan 21 2008 - 10:42:05 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Mon Jan 21 2008 - 12:11:51 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Tue Dec 18 2007 - 16:05:02 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Tue Dec 18 2007 - 12:56:55 CST)
- OpenSuSE 10.3: ppmtompeg and MovieMaker plugin Dow Hurst DPHURST (Fri Dec 14 2007 - 12:14:46 CST)
- display bonds Dongsheng Zhang (Fri Dec 14 2007 - 08:52:24 CST)
- add Mg2+ Lixia Jin Day (Thu Dec 13 2007 - 11:19:06 CST)
- calculation of alpha helical content L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 10:29:24 CST)
- VMD movie from XYZ coordinate if file has two type of atoms] Anil Kumar (Tue Dec 11 2007 - 04:20:07 CST)
- VMD movie from XYZ coordinate if file has two type of atoms Anil Kumar (Mon Dec 10 2007 - 22:43:49 CST)
- Re: helical construction Harish Lnu (Mon Dec 10 2007 - 13:16:39 CST)
- helical construction Harish Lnu (Mon Dec 10 2007 - 10:58:16 CST)
- delatom usage - no such segment? Stephen M. Dutz (Sun Dec 09 2007 - 19:05:37 CST)
- problem with the new cartoon representation mode OZGE ENGIN (Sat Dec 08 2007 - 13:42:12 CST)
- how to transform the coordinate of the atom using vmd Shulin Zhuang (Fri Dec 07 2007 - 14:01:51 CST)
- Finding the length of multiple small molecules Manali Mehendale (Fri Dec 07 2007 - 13:15:59 CST)
- drawing trajectory of a molecule L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 08:30:04 CST)
- Making movies in VMD Lili Peng (Wed Dec 05 2007 - 18:32:44 CST)
- Rainbow color scheme for VolumeSlice / Volume Xavier Cartoixa Soler (Tue Dec 04 2007 - 05:41:36 CST)
- Fwd: Re: Paratool in VMD Syed Tarique Moin (Tue Dec 04 2007 - 05:18:08 CST)
- FreeVR wand Ahmed Nawar (Tue Dec 04 2007 - 03:42:13 CST)
- applying forces on a protein in VMD Peter Schellenberg (Tue Dec 04 2007 - 02:05:58 CST)
- Membrane POPC Francesco Pietra (Sat Dec 01 2007 - 17:07:50 CST)
- Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 15:02:52 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:58:31 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:59:55 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 18:31:17 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Axel Kohlmeyer (Sun Dec 02 2007 - 20:34:21 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 20:57:41 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) John Stone (Sun Dec 02 2007 - 21:19:51 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 23:24:35 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) John Stone (Sun Dec 02 2007 - 19:53:20 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:58:31 CST)
- Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 15:02:52 CST)
- Multiseq Wendy Gonz醠ez (Fri Nov 30 2007 - 15:57:18 CST)
- psfgen delatom usage Stephen M. Dutz (Fri Nov 30 2007 - 15:36:18 CST)
- Timeline viewer Neelanjana Sengupta (Fri Nov 30 2007 - 09:50:33 CST)
- How to display Chain name in Labels TRINH Minh Hieu (Fri Nov 30 2007 - 07:33:57 CST)
- Command to change background to gradient TRINH Minh hieu (Fri Nov 30 2007 - 04:55:27 CST)
- SpaceNavigator Carsten Olbrich (Thu Nov 29 2007 - 11:23:01 CST)
- Re: SpaceNavigator John Stone (Thu Nov 29 2007 - 12:16:55 CST)
- Re: SpaceNavigator Carsten Olbrich (Fri Nov 30 2007 - 10:16:46 CST)
- Re: SpaceNavigator John Stone (Fri Nov 30 2007 - 10:24:02 CST)
- Re: SpaceNavigator Carsten Olbrich (Fri Nov 30 2007 - 10:58:32 CST)
- Re: SpaceNavigator John Stone (Fri Nov 30 2007 - 12:32:28 CST)
- Re: SpaceNavigator Carsten Olbrich (Mon Dec 03 2007 - 07:46:02 CST)
- Re: SpaceNavigator John Stone (Mon Dec 03 2007 - 18:52:09 CST)
- Re: SpaceNavigator Carsten Olbrich (Tue Dec 04 2007 - 01:21:46 CST)
- Re: SpaceNavigator John Stone (Tue Dec 04 2007 - 22:57:22 CST)
- Re: SpaceNavigator Carsten Olbrich (Fri Nov 30 2007 - 10:16:46 CST)
- Re: SpaceNavigator John Stone (Wed Jun 11 2008 - 02:53:39 CDT)
- Re: SpaceNavigator John Stone (Thu Nov 29 2007 - 12:16:55 CST)
- Water within the minmax of protein Pavan Ghatty (Thu Nov 29 2007 - 09:17:51 CST)
- problem with saving changed coordinates in a new state TaoJin (Wed Nov 28 2007 - 23:14:11 CST)
- Intersurf and interface residues Vincent Wolowski (Tue Nov 27 2007 - 13:34:40 CST)
- (UNCLASSIFIED) Balu, Radhakrishnan (Cont, ARL/WMRD) (Tue Nov 27 2007 - 09:18:18 CST)
- gaussinan_log_file_error_can't use empty string as operand of "/" Karol Kaszuba (Tue Nov 27 2007 - 03:28:04 CST)
- Paratools Syed Tarique Moin (Tue Nov 27 2007 - 03:06:27 CST)
- (no subject) Syed Tarique Moin (Mon Nov 26 2007 - 06:25:08 CST)
- difference for solvating a protein in long box suing or not using Molecule Dimensions Shulin Zhuang (Sun Nov 25 2007 - 16:43:40 CST)
- Delete overlapping residues Francesco Pietra (Sat Nov 24 2007 - 10:50:32 CST)
- Hydrophobicity plots in VMD aneesh cna (Sat Nov 24 2007 - 00:33:38 CST)
- Re: Hydrophobicity plots in VMD Peter Freddolino (Sat Nov 24 2007 - 08:36:20 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Sat Nov 24 2007 - 22:50:51 CST)
- Re: Hydrophobicity plots in VMD Axel Kohlmeyer (Sun Nov 25 2007 - 12:49:29 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Mon Nov 26 2007 - 04:09:44 CST)
- Re: Hydrophobicity plots in VMD John Stone (Mon Nov 26 2007 - 11:16:08 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Mon Nov 26 2007 - 23:31:43 CST)
- Re: Hydrophobicity plots in VMD John Stone (Tue Nov 27 2007 - 16:27:58 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Sat Nov 24 2007 - 22:50:51 CST)
- Re: Hydrophobicity plots in VMD Avell Diroll (Tue Nov 27 2007 - 03:22:21 CST)
- Re: Hydrophobicity plots in VMD Peter Freddolino (Sat Nov 24 2007 - 08:36:20 CST)
- cave Ahmed Nawar (Thu Nov 22 2007 - 06:09:24 CST)
- Re: cave John Stone (Thu Nov 22 2007 - 10:21:30 CST)
- RE: cave Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
- Re: cave John Stone (Sun Nov 25 2007 - 12:54:56 CST)
- RE: cave Axel Kohlmeyer (Sun Nov 25 2007 - 12:58:47 CST)
- RE: Suspected SpamFR:RE: cave Ahmed Nawar (Mon Nov 26 2007 - 00:54:23 CST)
- Re: Suspected SpamFR:RE: cave Axel Kohlmeyer (Mon Nov 26 2007 - 04:28:18 CST)
- cave Ahmed Nawar (Mon Nov 26 2007 - 06:12:41 CST)
- Re: cave John Stone (Mon Nov 26 2007 - 11:44:33 CST)
- Re: cave Ahmed Nawar (Tue Nov 27 2007 - 01:00:42 CST)
- RE: cave Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
- Re: cave John Stone (Thu Nov 22 2007 - 10:21:30 CST)
- solvate crashes Irene Newhouse (Thu Nov 22 2007 - 04:02:33 CST)
- problem with loading trajectories in timline plugin aneesh cna (Thu Nov 22 2007 - 00:24:00 CST)
- Re: analysing big trajectories (fwd) John Stone (Tue Nov 20 2007 - 17:30:59 CST)
- Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Tue Nov 20 2007 - 16:04:57 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine John Stone (Tue Nov 20 2007 - 17:24:36 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Axel Kohlmeyer (Wed Nov 21 2007 - 16:35:50 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 17:27:48 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine John Stone (Mon Nov 26 2007 - 19:00:24 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 19:30:32 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 20:09:30 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 17:27:48 CST)
- analysing big trajectories Oliver Beckstein (Tue Nov 20 2007 - 14:28:45 CST)
- Potential map animation, help! Cesar Millan (Tue Nov 20 2007 - 12:40:59 CST)
- Calculate density Jianhui Tian (Mon Nov 19 2007 - 15:21:20 CST)
- vmd 1.8.6 doesn't run on Fedora Core 7 EMT64 Pascale Geysermans (Fri Nov 16 2007 - 09:37:50 CST)
- re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found James.Beavis_at_csiro.au (Wed Nov 14 2007 - 19:28:02 CST)
- combine.tcl membrane plugin Francesco Pietra (Wed Nov 14 2007 - 12:05:12 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
- Re: combine.tcl membrane plugin Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Thu Nov 15 2007 - 03:33:31 CST)
- Re: combine.tcl membrane plugin Francesco Pietra (Thu Nov 15 2007 - 09:50:36 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Thu Nov 15 2007 - 22:47:21 CST)
- gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions Thomas C. Bishop (Fri Nov 16 2007 - 17:12:27 CST)
- Re: gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions Axel Kohlmeyer (Sat Nov 17 2007 - 00:11:54 CST)
- Re: gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions Thomas C. Bishop (Mon Nov 19 2007 - 10:27:02 CST)
- Re: combine.tcl membrane plugin Peter Freddolino (Thu Nov 15 2007 - 09:44:00 CST)
- Re: combine.tcl membrane plugin Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
- OpenGL Display Christopher Stiles (Tue Nov 13 2007 - 23:33:32 CST)
- installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found James.Beavis_at_csiro.au (Tue Nov 13 2007 - 21:47:43 CST)
- Dynamic bonds and H2 molecules. David Schall (Tue Nov 13 2007 - 11:17:30 CST)
- stride binaries for windows XP OS aneesh cna (Mon Nov 12 2007 - 23:21:34 CST)
- problem with colouring the surface with electroststic potential aneesh cna (Mon Nov 12 2007 - 23:15:25 CST)
- problems with atomselect: missing selection Philipp Sch鰊 (Mon Nov 12 2007 - 05:23:32 CST)
- POPS topology file lucie huynh (Mon Nov 12 2007 - 03:55:04 CST)
- Generatin PSF for alkanes Santanu Chatterjee (Sat Nov 10 2007 - 22:38:55 CST)
- merging two pdb files Dibyadeep Paul (Thu Nov 08 2007 - 06:06:19 CST)
- molfile reader plugin woes Olaf Lenz (Thu Nov 08 2007 - 02:31:42 CST)
- VMD/NAMD at SC2007 John Stone (Wed Nov 07 2007 - 21:41:57 CST)
- question about ionization Anatoliy (Wed Nov 07 2007 - 12:10:12 CST)
- Out of office until Nov. 16 John Stone (Wed Nov 07 2007 - 11:57:55 CST)
- merge pbd psf files (update) Alessio Alexiadis (Wed Nov 07 2007 - 07:47:48 CST)
- combine together two PBD/PSF files Alessio Alexiadis (Wed Nov 07 2007 - 07:38:42 CST)
- vmd command delay jiwu liu (Mon Nov 05 2007 - 16:55:50 CST)
- Download vmd for 64-bit Intel Itanium FyD (Mon Nov 05 2007 - 15:00:36 CST)
- question about water sphere script Anatoliy (Mon Nov 05 2007 - 11:21:54 CST)
- Alignment Zhaochuan Shen (Thu Nov 01 2007 - 16:52:12 CDT)
- Re: Alignment John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
- Re: Alignment John Stone (Sun Nov 04 2007 - 13:53:06 CST)
- Re: Alignment Zhaochuan Shen (Mon Nov 05 2007 - 11:41:52 CST)
- Re: Alignment Giovanni Bellesia (Mon Nov 05 2007 - 12:10:58 CST)
- Tripos mol2 file in VMD FyD (Mon Nov 05 2007 - 14:57:03 CST)
- Re: Tripos mol2 file in VMD Peter Freddolino (Mon Nov 05 2007 - 14:59:39 CST)
- Re: Tripos mol2 file in VMD FyD (Mon Nov 05 2007 - 15:14:20 CST)
- Re: Tripos mol2 file in VMD Peter Freddolino (Mon Nov 05 2007 - 15:02:36 CST)
- Re: Alignment John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
- problem with protein RMSD calculation due to incomplete wrapping of both peptide chains Maria Bagonis (Thu Nov 01 2007 - 16:11:04 CDT)
- cloning a molecule dimka (Thu Nov 01 2007 - 13:46:44 CDT)
- TMD in NAMD: cannot reach target lily jin (Thu Nov 01 2007 - 13:13:23 CDT)
- vmd ubuntu crash jacopo.sgrignani_at_unifi.it (Thu Nov 01 2007 - 11:45:04 CDT)
- aligning protein based on one helix of protein maria goranovic (Wed Oct 31 2007 - 08:48:29 CDT)
- CMYK Adrian Roitberg (Tue Oct 30 2007 - 16:08:37 CDT)
- Re: namd-l: NAMDEnergy lily jin (Tue Oct 30 2007 - 12:34:43 CDT)
- NAMDEnergy lily jin (Tue Oct 30 2007 - 12:00:57 CDT)
- Re: rna topology and parameters for rna Per Jr. Greisen (Sun Oct 28 2007 - 04:56:03 CDT)
- how to display dcd file written with catdcd using an index file Irene Newhouse (Fri Oct 26 2007 - 14:08:44 CDT)
- periodic box manipulation Vlad Cojocaru (Fri Oct 26 2007 - 07:39:58 CDT)
- installation of APBS plug-in in VMD 1.8.6 Lhee, SangMoon (Thu Oct 25 2007 - 21:14:47 CDT)
- Writing in NAMD binary format in VMD from TCl/Tk console? poker_at_physics.usyd.edu.au (Tue Oct 23 2007 - 20:33:05 CDT)
- superposition of two complex according to the same inhibitor Emilia Wu (Mon Oct 22 2007 - 21:42:59 CDT)
- FW: VMD & OpenGL GLX Extension Meij, Henk (Mon Oct 22 2007 - 14:55:42 CDT)
- status of psfgen support for CHARMM psf format Dow Hurst DPHURST (Mon Oct 22 2007 - 09:37:30 CDT)
- Color by Volume on an Intel 945GM Jeffry D Madura (Sat Oct 20 2007 - 14:42:07 CDT)
- how to remove chain id ? Sanghyun Park (Fri Oct 19 2007 - 21:57:10 CDT)
- Extracting IR spectra from trajectories Cesar Luis Avila (Fri Oct 19 2007 - 10:08:45 CDT)
- Problem with bigdcd Vishal Kopard (Fri Oct 19 2007 - 09:03:24 CDT)
- APBS dx colors depend on order of molec files loaded??? Chari, Ravi (Thu Oct 18 2007 - 14:52:48 CDT)
- RE: multiple attempts before vmd starts up ZT Yew (Thu Oct 18 2007 - 07:03:23 CDT)
- multiple attempts before vmd starts up ZT Yew (Wed Oct 17 2007 - 20:25:55 CDT)
- (no subject) ZT Yew (Wed Oct 17 2007 - 18:26:24 CDT)
- Exelent quality watch Landon Beaver (Wed Oct 17 2007 - 17:56:35 CDT)
- H- bond emra Heshmati (Wed Oct 17 2007 - 12:16:47 CDT)
- Is catdcd running on Windows? Philipp Sch鰊 (Wed Oct 17 2007 - 03:45:54 CDT)
- Problem vmd1.8.5 & vmd1.8.6 on a mac-pro running ubuntu ZT Yew (Tue Oct 16 2007 - 10:13:22 CDT)
- Error with stride Per Jr. Greisen (Tue Oct 16 2007 - 09:01:21 CDT)
- bonds across periodic boundaries Barry Bickmore (Tue Oct 16 2007 - 08:53:09 CDT)
- Strange behaviour of MSMS Ezequiel Quintana Morales (Tue Oct 16 2007 - 07:33:07 CDT)
- Re: residue selection (water molecule within 5 ang. to protein in simulation) kinshuk_at_chem.iitb.ac.in (Mon Oct 15 2007 - 23:54:21 CDT)
- Problems Opening Large .dx File Corenflos, Steven Charles (Mon Oct 15 2007 - 11:30:04 CDT)
- Generating parameter file for Cl2- Per Jr. Greisen (Mon Oct 15 2007 - 10:39:36 CDT)
- setting unit cell dimensions bbickmore_at_comcast.net (Sun Oct 14 2007 - 23:07:50 CDT)
- combine.tcl error Francesco Pietra (Sun Oct 14 2007 - 03:23:23 CDT)
- residue selection (water molecule within 5 ang. to protein in simulation) kinshuk_at_chem.iitb.ac.in (Sun Oct 14 2007 - 02:21:32 CDT)
- Small molecules Amit (Fri Oct 12 2007 - 18:02:51 CDT)
- residue selection Giovanni Bellesia (Fri Oct 12 2007 - 14:19:32 CDT)
- VMD access using XWIN32 or X-Deep Deepangi Pandit (Fri Oct 12 2007 - 13:20:01 CDT)
- Fixing the View in a Movie carlos_at_avalon.umaryland.edu (Fri Oct 12 2007 - 11:44:45 CDT)
- VMD access using XWIN32 or X-Deep Deepangi Pandit (Fri Oct 12 2007 - 11:35:52 CDT)
- RMSD Trajectory Tool Zhaochuan Shen (Wed Oct 10 2007 - 13:09:22 CDT)
- Re: namd-l: Molecule drifts and high average RMSD per residue Peter Freddolino (Tue Oct 09 2007 - 09:45:23 CDT)
- Rotate a box with pcb Matteo Guglielmi (Tue Oct 09 2007 - 07:02:34 CDT)
- Re: You are right. That's the problem. Axel Kohlmeyer (Mon Oct 08 2007 - 12:10:07 CDT)
- Normal VMD crashed when pdb load but Debug mode works weilin Zhang (Mon Oct 08 2007 - 09:45:50 CDT)
- the representation of within 10 angstrom of a specific point Emilia Wu (Sun Oct 07 2007 - 22:01:08 CDT)
- Cube Files - proportion of the electron density Jay Shore (Sun Oct 07 2007 - 15:50:40 CDT)
- NAMDENERGY analysis Narender Singh Maan (Thu Oct 04 2007 - 13:34:16 CDT)
- How to put metal ion into my protein Shulin Zhuang (Wed Oct 03 2007 - 22:29:40 CDT)
- no transparency on newest iMacs Christoph Weber (Wed Oct 03 2007 - 19:05:21 CDT)
- Re: Installation and running on VMD on Debian Testing System Brian Bennion (Wed Oct 03 2007 - 09:51:54 CDT)
- creating nonstandard solvent lucie huynh (Wed Oct 03 2007 - 07:53:21 CDT)
- Installation and running on VMD on Debian Testing System Lorenzo Isella (Wed Oct 03 2007 - 07:48:08 CDT)
- time step Alessio Alexiadis (Wed Oct 03 2007 - 07:44:13 CDT)
- hbonds (how to count) Alessio Alexiadis (Wed Oct 03 2007 - 03:28:52 CDT)
- namdenergy problem Narender Singh Maan (Tue Oct 02 2007 - 14:53:47 CDT)
- query regarding membrane building kalyan chaitanya (Sat Sep 29 2007 - 09:41:14 CDT)
- util Peter Freddolino (Fri Sep 28 2007 - 16:39:56 CDT)
- Storing multiple values in the user field Bob Johnson (Fri Sep 28 2007 - 16:15:05 CDT)
- video memory and volumetric data Jim Fonseca (Fri Sep 28 2007 - 15:15:02 CDT)
- behavior of "mol addfile first/last" with non-integer frame numbers Axel Kohlmeyer (Thu Sep 27 2007 - 19:35:40 CDT)
- Charlie Buy your loved one Hermes Dick Medrano (Thu Sep 27 2007 - 20:39:34 CDT)
- vmd files between linux and windows Sampo Karkola (Thu Sep 27 2007 - 07:52:16 CDT)
- atom index number Naser, Md Abu (Thu Sep 27 2007 - 01:28:29 CDT)
- How can I get .xyzr file or .xyzrn file? ChenFei (Wed Sep 26 2007 - 02:27:51 CDT)
- topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp Dhiraj Srivastava (Tue Sep 25 2007 - 19:00:30 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp Dhiraj Srivastava (Tue Sep 25 2007 - 19:33:14 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp L. Michel Espinoza-Fonseca (Tue Sep 25 2007 - 19:33:46 CDT)
- RE: Can't execvp vmd_SOLARISX86 Austin Small (Tue Sep 25 2007 - 16:14:16 CDT)
- MultiSeq on the windows vista OS Lhee, SangMoon (Mon Sep 24 2007 - 13:30:25 CDT)
- Can't execvp vmd_SOLARISX86 Austin Small (Sun Sep 23 2007 - 23:42:50 CDT)
- residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 13:22:45 CDT)
- Re: residue selection: conflict between resid and residue Axel Kohlmeyer (Fri Sep 21 2007 - 13:15:29 CDT)
- Re: residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 15:14:23 CDT)
- Re: residue selection: conflict between resid and residue John Stone (Fri Sep 21 2007 - 15:24:04 CDT)
- Re: residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 16:04:56 CDT)
- Re: residue selection: conflict between resid and residue Axel Kohlmeyer (Fri Sep 21 2007 - 17:08:32 CDT)
- Re: residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 15:14:23 CDT)
- Re: residue selection: conflict between resid and residue Axel Kohlmeyer (Fri Sep 21 2007 - 13:15:29 CDT)
- Create a PSF Andrea.Cristiani_at_pharm.unige.ch (Fri Sep 21 2007 - 04:16:37 CDT)
- output of distances between atoms or coordinates INPE (Ingrid Viveka Pettersson) (Thu Sep 20 2007 - 08:27:39 CDT)
- Problem generating PSF file for decalanine...any help? Santanu Chatterjee (Wed Sep 19 2007 - 18:24:38 CDT)
- Problem generating PSF file for decalanine...any help? Santanu Chatterjee (Wed Sep 19 2007 - 18:20:58 CDT)
- sidechain correlated motions L. Michel Espinoza-Fonseca (Wed Sep 19 2007 - 17:18:04 CDT)
- smooting structure Myunggi Yi (Wed Sep 19 2007 - 11:38:23 CDT)
- Residue highlighting in MD Traj M kutty (Wed Sep 19 2007 - 03:15:09 CDT)
- passive stereo projection using a Mac Jeff Hoch (Tue Sep 18 2007 - 12:18:15 CDT)
- change the representation of certain atoms which pass a geometric criterion during a movie maria goranovic (Tue Sep 18 2007 - 08:21:45 CDT)
- Re: osx startup script John Stone (Mon Sep 17 2007 - 15:34:55 CDT)
- problem with timeline plugin aneesh cna (Mon Sep 17 2007 - 05:33:29 CDT)
- problems with ADP vanadate Daniel Kennedy (Sun Sep 16 2007 - 11:12:09 CDT)
- VMD text mode version Myunggi Yi (Fri Sep 14 2007 - 10:10:58 CDT)
- "truncate_trajectory" a new plugin 腮灬 捧徙沐腴溏 (Fri Sep 14 2007 - 10:01:23 CDT)
- Questions abt VMD plugins Audrey Salazar (Fri Sep 14 2007 - 08:59:48 CDT)
- secondary structure colors in timeline plugin cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 07:51:31 CDT)
- Generating water transparency around a protein Jeffry D Madura (Fri Sep 14 2007 - 06:31:14 CDT)
- VMD on Playstation 3 Jeffry D Madura (Fri Sep 14 2007 - 06:30:58 CDT)
- secondary structure colors in timeline plugin cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 06:24:30 CDT)
- Problems with a multiple orbital cube file Dr. Seth Olsen (Fri Sep 14 2007 - 01:49:38 CDT)
- VMD Images and Movies Tutorial: Working With Trajectories Roland Schmucki (Thu Sep 13 2007 - 03:32:05 CDT)
- Re: program finishes before bigdcd is executed completely 腮灬 捧徙沐腴溏 (Tue Sep 11 2007 - 13:56:32 CDT)
- program finishes before bigdcd is ececuted completely 腮灬 捧徙沐腴溏 (Mon Sep 10 2007 - 14:57:11 CDT)
- polymer molecule orientation parameter Catherine Tweedie (Mon Sep 10 2007 - 13:45:11 CDT)
- changing the tilt angle of a peptide embedded in a membrane L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:08:38 CDT)
- changing the tile angle of a peptide embedded in a membrane L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 12:57:13 CDT)
- problem regarding timeline aneesh cna (Mon Sep 10 2007 - 10:54:01 CDT)
- Re: namd-l: STRIDE Algorithm L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 10:43:56 CDT)
- GLSL rendering mode is NOT available Roland Schmucki (Mon Sep 10 2007 - 07:04:48 CDT)
- Further angle question jo hanna (Sat Sep 08 2007 - 09:16:15 CDT)
- vmdbasename: Undefined variable Austin Small (Sat Sep 08 2007 - 12:13:41 CDT)
- Computing angles jo hanna (Fri Sep 07 2007 - 17:18:33 CDT)
- Fwd: peptide builder L. Michel Espinoza-Fonseca (Fri Sep 07 2007 - 11:35:39 CDT)
- is it possible to skip frame when using bigdcd maria goranovic (Fri Sep 07 2007 - 03:47:05 CDT)
- Averaging volmaps Cesar Luis Avila (Thu Sep 06 2007 - 10:11:36 CDT)
- the console window is automatically closed without any error messages Hu Zhonghan (Thu Sep 06 2007 - 10:05:15 CDT)
- PMEpot + bigDCD ? Cesar Luis Avila (Wed Sep 05 2007 - 15:08:00 CDT)
- Solvate package brmorgan_at_clarku.edu (Wed Sep 05 2007 - 13:02:03 CDT)
- Rebuilding lipid from headgroup coordinates only using psfgen, some atoms put on origin maria goranovic (Wed Sep 05 2007 - 11:05:12 CDT)
- advanced python console Gianluca Santarossa (Tue Sep 04 2007 - 09:17:45 CDT)
- regular expression in Tcl 腮灬 捧徙沐腴溏 (Tue Sep 04 2007 - 06:13:56 CDT)
- Your Zoc0r 0rder #46390 Vito Ashley (Tue Sep 04 2007 - 03:20:14 CDT)
- Stylish repl1ca w4tches from famous brands Susan Langston (Tue Sep 04 2007 - 03:16:35 CDT)
- Delightsome Cart1er w4tches at Prest1ge Repl1cas Carson Cope (Fri Aug 31 2007 - 13:58:34 CDT)
- Your Val1um 0rder #799563 Eliza Wray (Fri Aug 31 2007 - 10:02:23 CDT)
- How to solvate a protein in a large water sphere Shulin Zhuang (Fri Aug 31 2007 - 03:44:50 CDT)
- Problem with saving coordinate bo baker (Thu Aug 30 2007 - 22:44:57 CDT)
- Re: Problem with saving coordinate Axel Kohlmeyer (Fri Aug 31 2007 - 00:17:25 CDT)
- Re: Problem with saving coordinate bo baker (Fri Aug 31 2007 - 01:55:26 CDT)
- Re: Problem with saving coordinate John Stone (Fri Aug 31 2007 - 02:08:30 CDT)
- Re: Problem with saving coordinate bo baker (Sat Sep 01 2007 - 18:49:57 CDT)
- Re: Problem with saving coordinate John Stone (Sat Sep 01 2007 - 21:04:16 CDT)
- Re: Problem with saving coordinate bo baker (Sun Sep 02 2007 - 20:18:13 CDT)
- Re: Problem with saving coordinate bo baker (Fri Aug 31 2007 - 01:55:26 CDT)
- Re: Problem with saving coordinate Axel Kohlmeyer (Fri Aug 31 2007 - 00:17:25 CDT)
- solvation Francesco Pietra (Thu Aug 30 2007 - 15:05:59 CDT)
- RE: VMD analysis using NAMD plot Richard Swenson (Wed Aug 29 2007 - 10:42:59 CDT)
- VMD analysis using NAMD plot Philipp Sch鰊 (Wed Aug 29 2007 - 05:47:01 CDT)
- dcd file error dimka (Tue Aug 28 2007 - 17:50:52 CDT)
- numbonds Eduard Schreiner (Tue Aug 28 2007 - 10:54:20 CDT)
- Delightful repl1ca w4tches at Prest1ge Repl1cas Kenton Webster (Tue Aug 28 2007 - 09:33:17 CDT)
- Re: Your Pharm4cy 0rder #530152 Susanna Crowe (Tue Aug 28 2007 - 05:22:21 CDT)
- TIP5P jestin mandumpal (Sun Aug 26 2007 - 23:41:03 CDT)
- coordinates with get command Nuno Loureiro Ferreira (Sat Aug 25 2007 - 18:10:02 CDT)
- Prest1ge Repl1cas ravishing repl1ca w4tches for you Liliana Dawson (Sat Aug 25 2007 - 12:24:44 CDT)
- No prescr1ption? No problem! Buford Greene (Sat Aug 25 2007 - 09:27:00 CDT)
- changing the order of atom selections / alignment issue Jim Pfaendtner (Fri Aug 24 2007 - 17:58:51 CDT)
- vmd-1.8.6 fails with python-2.5 Jeffrey Gardner (Fri Aug 24 2007 - 17:20:51 CDT)
- measure imprp - input order of atoms Johannes M黮legger (Fri Aug 24 2007 - 14:51:00 CDT)
- atomselection in order Myunggi Yi (Thu Aug 23 2007 - 22:19:35 CDT)
- Re: atomselection in order Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
- Re: atomselection in order Thomas C. Bishop (Mon Aug 27 2007 - 09:34:15 CDT)
- Re: atomselection in order Myunggi Yi (Tue Aug 28 2007 - 08:29:03 CDT)
- Re: atomselection in order Myunggi Yi (Tue Aug 28 2007 - 09:22:35 CDT)
- Re: atomselection in order Leonardo Trabuco (Tue Aug 28 2007 - 10:12:10 CDT)
- Re: atomselection in order Myunggi Yi (Tue Aug 28 2007 - 16:35:49 CDT)
- Re: atomselection in order John Stone (Wed Aug 29 2007 - 00:11:02 CDT)
- Re: atomselection in order Myunggi Yi (Thu Aug 30 2007 - 08:49:25 CDT)
- Re: atomselection in order Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
- Aggregation analysis zhenlong li (Thu Aug 23 2007 - 10:07:49 CDT)
- Selection within VMD Mark Zottola (Wed Aug 22 2007 - 14:28:53 CDT)
- Re: FYI: 1.8.6 runs full GLSL on AMD64 John Stone (Wed Aug 22 2007 - 13:40:37 CDT)
- automating graphic representations Jim Pfaendtner (Wed Aug 22 2007 - 13:37:41 CDT)
- W4tches from simple to luxurious at Prest1ge Repl1cas Douglas Dahl (Wed Aug 22 2007 - 13:49:57 CDT)
- The only med1cation for we1ght l0ss that does work Mayra Underwood (Wed Aug 22 2007 - 13:03:07 CDT)
- VMD w/ amber parm7, segnames/chains etc... Thomas C. Bishop (Wed Aug 22 2007 - 09:30:57 CDT)
- Selecting the N-closest Waters J T (Tue Aug 21 2007 - 12:40:19 CDT)
- Re: Selecting the N-closest Waters Nuno Loureiro Ferreira (Tue Aug 21 2007 - 15:55:13 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 16:10:03 CDT)
- Re: Selecting the N-closest Waters Nuno Loureiro Ferreira (Tue Aug 21 2007 - 16:34:25 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 18:54:08 CDT)
- Re: Selecting the N-closest Waters Axel Kohlmeyer (Tue Aug 21 2007 - 18:23:55 CDT)
- Re: Selecting the N-closest Waters Axel Kohlmeyer (Tue Aug 21 2007 - 19:26:57 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 20:00:47 CDT)
- Re: Selecting the N-closest Waters Axel Kohlmeyer (Tue Aug 21 2007 - 20:35:16 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 16:10:03 CDT)
- Re: Selecting the N-closest Waters Claw Isthelaw (Mon Jun 02 2008 - 13:25:51 CDT)
- Re: Selecting the N-closest Waters Nuno Loureiro Ferreira (Tue Aug 21 2007 - 15:55:13 CDT)
- How to load packages from tcllib into VMD Cesar Luis Avila (Mon Aug 20 2007 - 14:59:49 CDT)
- VMD crashes during the execution of a computational intensive TCL script 腮灬 捧徙沐腴溏 (Mon Aug 20 2007 - 16:25:33 CDT)
- residue missed by psfgen Daniel Kennedy (Mon Aug 20 2007 - 12:09:05 CDT)
- No prescr1ption? No problem! Ferdinand Benton (Sun Aug 19 2007 - 10:50:20 CDT)
- Luxurious costume repl1ca w4tches at lowest prices Marvin Allen (Sun Aug 19 2007 - 08:30:41 CDT)
- Need help sleeping? Read this! Kendra Baker (Thu Aug 16 2007 - 20:39:47 CDT)
- Prest1ge Repl1cas your source for high-quality w4tches Lula Miner (Thu Aug 16 2007 - 19:21:55 CDT)
- NAMD energy plugin Cesar Luis Avila (Wed Aug 15 2007 - 08:22:59 CDT)
- Very peculiar problem with bigdcd if not running interactively (post moved over from namd forum) maria goranovic (Wed Aug 15 2007 - 04:09:32 CDT)
- Installing VMD to work with MSMS Audrey Salazar (Tue Aug 14 2007 - 11:07:38 CDT)
- Archived Spam in the VMD-L Mailing List Audrey Salazar (Tue Aug 14 2007 - 10:00:30 CDT)
- Increasing use of RAM even if I put unset/delete for selections! Due to use of arrays? Philipp Sch鰊 (Tue Aug 14 2007 - 05:28:13 CDT)
- printing timeline window with axes hodak_at_chips.ncsu.edu (Mon Aug 13 2007 - 22:07:27 CDT)
- Re: help with badwater script Jim Pfaendtner (Mon Aug 13 2007 - 18:38:12 CDT)
- Re: Re: help with badwater script Axel Kohlmeyer (Mon Aug 13 2007 - 19:08:30 CDT)
- Re: Re: help with badwater script Jim Pfaendtner (Tue Aug 14 2007 - 15:29:12 CDT)
- Changing the Index values of a molecule (the differenece between gro and pdb files) Arneh Babakhani (Wed Aug 15 2007 - 12:39:08 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Peter Freddolino (Wed Aug 15 2007 - 12:34:52 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Arneh Babakhani (Wed Aug 15 2007 - 13:06:17 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Axel Kohlmeyer (Wed Aug 15 2007 - 12:51:30 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Giovanni Bellesia (Wed Aug 15 2007 - 13:32:56 CDT)
- Re: Re: help with badwater script Jim Pfaendtner (Tue Aug 14 2007 - 15:29:12 CDT)
- Re: Re: help with badwater script Axel Kohlmeyer (Mon Aug 13 2007 - 19:08:30 CDT)
- new machine problems. Fred Moore (Mon Aug 13 2007 - 17:58:46 CDT)
- create psf and dcd from pdb 腮灬 捧徙沐腴溏 (Mon Aug 13 2007 - 16:26:27 CDT)
- problem regarding stride aneesh cna (Mon Aug 13 2007 - 05:31:32 CDT)
- problem regarding stride aneesh cna (Mon Aug 13 2007 - 00:58:09 CDT)
- VMD plugin error src/webpdbplugin.c AustinSmall_at_comcast.net (Sun Aug 12 2007 - 18:08:17 CDT)
- chime vs vmd Francesco Pietra (Sun Aug 12 2007 - 11:11:05 CDT)
- RE: plotting on Mac Claw Isthelaw (Sat Aug 11 2007 - 19:53:35 CDT)
- Reference for SASA Patrick Redmill (Sat Aug 11 2007 - 17:48:03 CDT)
- Re: gmake invalid option --c install AustinSmall_at_comcast.net (Sat Aug 11 2007 - 12:52:32 CDT)
- gmake invalid option --c install AustinSmall_at_comcast.net (Sat Aug 11 2007 - 10:47:45 CDT)
- RE: bilayer thickness in simulation of POPC membranes Cojocaru,Vlad (Sat Aug 11 2007 - 10:08:28 CDT)
- Adjusting R/S configuration Francesco Pietra (Sat Aug 11 2007 - 02:21:47 CDT)
- problem regarding stride gurpreet singh (Sat Aug 11 2007 - 01:44:25 CDT)
- povray problem: degenerate cylinder revisited Robin L Hayes (Fri Aug 10 2007 - 17:22:37 CDT)
- Color a protein based on a property Naresh (Fri Aug 10 2007 - 14:13:42 CDT)
- dcd reading routines nmichaud_at_jhu.edu (Fri Aug 10 2007 - 13:12:15 CDT)
- bilayer thickness in simulation of POPC membranes Vlad Cojocaru (Fri Aug 10 2007 - 10:56:41 CDT)
- how to make user input during runtime of a tcl program using TkConsole? Philipp Sch鰊 (Fri Aug 10 2007 - 10:14:46 CDT)
- mutate residue xzhao_at_uiuc.edu (Thu Aug 09 2007 - 21:02:15 CDT)
- What does Stride need to draw SS? Jim Pfaendtner (Thu Aug 09 2007 - 16:49:58 CDT)
- package require Tcl 8.5 => ::tcl::mathfunc:: Philipp Sch鰊 (Thu Aug 09 2007 - 10:56:09 CDT)
- radial density Christopher Stiles (Thu Aug 09 2007 - 09:11:55 CDT)
- Monte Carlo conformational search Daniel Kennedy (Wed Aug 08 2007 - 11:23:54 CDT)
- Writing MolFile plugin for CIF Ondrej Sramek (Wed Aug 08 2007 - 06:12:03 CDT)
- VMD acts too slow Roland Schmucki (Tue Aug 07 2007 - 20:38:49 CDT)
- CNT Analysis Christopher Stiles (Tue Aug 07 2007 - 08:41:31 CDT)
- a problem with installation (to generate the Makefile ) Panichakorn Jaiyong (Mon Aug 06 2007 - 23:52:26 CDT)
- VMD plugins error AustinSmall_at_comcast.net (Mon Aug 06 2007 - 22:18:52 CDT)
- within and exwithin macro 腮灬 捧徙沐腴溏 (Mon Aug 06 2007 - 16:52:34 CDT)
- Automatic PSF Builder Help Audrey Salazar (Mon Aug 06 2007 - 11:16:12 CDT)
- Re: Automatic PSF Builder Help Peter Freddolino (Mon Aug 06 2007 - 11:46:46 CDT)
- Re: Automatic PSF Builder Help Axel Kohlmeyer (Mon Aug 06 2007 - 11:29:16 CDT)
- Loading files into already-running version of VMD from command prompt Victor Albert (Sat Aug 04 2007 - 16:04:16 CDT)
- chloroform box Francesco Pietra (Sat Aug 04 2007 - 00:52:20 CDT)
- Corrupt cpmd-vmd.pdf File? rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:46:07 CDT)
- Corrupt cpmd-vmd.pdf File? rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:42:54 CDT)
- How to calculate the C alpha RMSD from NAMD trajectory Shulin Zhuang (Fri Aug 03 2007 - 02:31:22 CDT)
- save state fails Vlad Cojocaru (Thu Aug 02 2007 - 10:09:12 CDT)
- eigen values Myunggi Yi (Wed Aug 01 2007 - 14:36:00 CDT)
- ViewMaster and rendering Paula Marcela Petrone (Wed Aug 01 2007 - 10:00:34 CDT)
- question about measure contacts Rachel (Tue Jul 31 2007 - 08:42:57 CDT)
- coloring selected chains and residues karan uppal (Mon Jul 30 2007 - 18:58:05 CDT)
- Problems to load Gaussian .log file in Paratool Alexandre Suman de Araujo (Mon Jul 30 2007 - 13:05:56 CDT)
- Tachyon doesn't take into account ColorID Henry Yuen (Mon Jul 30 2007 - 12:54:13 CDT)
- adding urea to a protein-water system L. Michel Espinoza-Fonseca (Mon Jul 30 2007 - 05:05:46 CDT)
- PBC problem in gofr sfrickenhaus (Mon Jul 30 2007 - 04:53:40 CDT)
- RE: problem with rmsd-fullthrottle Irene Newhouse (Sat Jul 28 2007 - 15:02:54 CDT)
- can't add packages karan uppal (Sat Jul 28 2007 - 12:59:37 CDT)
- orientation of hexahedrons parallelepipeds unit cells relative to x,y axes 腮灬 捧徙沐腴溏 (Sat Jul 28 2007 - 09:03:23 CDT)
- problem with rmsd-fullthrottle Irene Newhouse (Fri Jul 27 2007 - 15:16:54 CDT)
- Wrap only whole molecules zhenlong li (Fri Jul 27 2007 - 13:00:54 CDT)
- dssp in vmd (II) pascal.baillod_at_epfl.ch (Fri Jul 27 2007 - 05:04:54 CDT)
- RE: puzzling psfgen problem with deleted atoms coming back Irene Newhouse (Thu Jul 26 2007 - 17:40:01 CDT)
- RE: residue_rmsd.tcl Irene Newhouse (Thu Jul 26 2007 - 16:17:46 CDT)
- installation errors with src/hesstrans_wrap.C AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:16:39 CDT)
- puzzling psfgen problem with deleted atoms coming back Irene Newhouse (Fri Jul 13 2007 - 16:47:05 CDT)
- (no subject) AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:06:23 CDT)
- badwater script - help Jim Pfaendtner (Thu Jul 26 2007 - 15:18:48 CDT)
- residue_rmsd.tcl Irene Newhouse (Thu Jul 26 2007 - 12:37:51 CDT)
- python and C++ extensions karan uppal (Thu Jul 26 2007 - 11:19:06 CDT)
- deposition simulation from lammps Kathleen Barron (Thu Jul 26 2007 - 11:04:33 CDT)
- Rotation matrix translatin vector vmd Hazai Eszter (Thu Jul 26 2007 - 05:37:23 CDT)
- nonstandard solvate + cyclic peptides in explicit DMSO box + gofr sfrickenhaus (Thu Jul 26 2007 - 04:45:13 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr Peter Freddolino (Thu Jul 26 2007 - 07:41:24 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr John Stone (Thu Jul 26 2007 - 11:33:52 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr Axel Kohlmeyer (Thu Jul 26 2007 - 11:48:08 CDT)
- Boundry Dimensions for Solvation Vijaya Brahma (Thu Jul 26 2007 - 04:25:03 CDT)
- Re: ntermolecular atomselection Nuno Loureiro Ferreira (Thu Jul 26 2007 - 03:23:25 CDT)
- ntermolecular atomselection Robert Wohlhueter (Thu Jul 26 2007 - 00:27:38 CDT)
- Boundry Dimensions for Solvation Vijaya Brahma (Wed Jul 25 2007 - 23:56:13 CDT)
- vmd multiple residue snoze pa (Wed Jul 25 2007 - 14:42:05 CDT)
- vmd residue position snoze pa (Wed Jul 25 2007 - 14:29:51 CDT)
- how to run VMD on IBM machines Rachel (Wed Jul 25 2007 - 11:11:34 CDT)
- how to wrap trajectory into truncated octahedral box Rachel (Wed Jul 25 2007 - 10:51:54 CDT)
- Re: how to wrap trajectory into truncated octahedral box Olaf Lenz (Wed Jul 25 2007 - 12:39:39 CDT)
- Re: how to wrap trajectory into truncated octahedral box David A. Case (Mon Jul 30 2007 - 11:30:15 CDT)
- Calculating volumetric data for a molecule Cesar Luis Avila (Tue Jul 24 2007 - 17:30:43 CDT)
- NAMDEnergy virginia miguel (Tue Jul 24 2007 - 13:18:37 CDT)
- frame number input in tcl and direct mol graph display update (II) pascal.baillod_at_epfl.ch (Tue Jul 24 2007 - 09:36:35 CDT)
- how to select atoms according to b-factor Rachel (Mon Jul 23 2007 - 07:37:05 CDT)
- saltbr# vs. frames hori koshii (Mon Jul 23 2007 - 06:50:10 CDT)
- Autopsf snoze pa (Fri Jul 20 2007 - 12:42:18 CDT)
- Parameter snoze pa (Fri Jul 20 2007 - 12:03:12 CDT)
- what's the unit for color scale data range? Insight II (Thu Jul 19 2007 - 15:09:17 CDT)
- Re: what's the unit for color scale data range? Leonardo Trabuco (Thu Jul 19 2007 - 15:35:27 CDT)
- Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Thu Jul 19 2007 - 18:01:01 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) Axel Kohlmeyer (Fri Jul 20 2007 - 00:02:24 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Fri Jul 20 2007 - 09:19:00 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) John Stone (Fri Jul 20 2007 - 11:27:39 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Fri Jul 20 2007 - 12:35:24 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) John Stone (Fri Jul 20 2007 - 13:27:53 CDT)
- Recognized atom types by VMD PDB reader Arneh Babakhani (Fri Jul 20 2007 - 12:52:48 CDT)
- Re: Recognized atom types by VMD PDB reader John Stone (Fri Jul 20 2007 - 13:31:15 CDT)
- Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Thu Jul 19 2007 - 18:01:01 CDT)
- Re: what's the unit for color scale data range? John Stone (Fri Jul 20 2007 - 11:23:46 CDT)
- Re: what's the unit for color scale data range? Leonardo Trabuco (Thu Jul 19 2007 - 15:35:27 CDT)
- Writing out .dcd for discontinous frames Neelanjana Sengupta (Thu Jul 19 2007 - 00:09:36 CDT)
- Setting modstyle volumeslice options via tk console Cesar Luis Avila (Wed Jul 18 2007 - 15:16:20 CDT)
- Re: Making a selection from another selection Arneh Babakhani (Tue Jul 17 2007 - 20:35:19 CDT)
- water sphere? Daniel Kennedy (Tue Jul 17 2007 - 16:40:57 CDT)
- Regarding APBS calculation in VMD naga raju (Tue Jul 17 2007 - 07:39:06 CDT)
- TkCon problem luca.dallaglio2_at_studio.unibo.it (Mon Jul 16 2007 - 02:15:29 CDT)
- atoms deleted in patch try to come back Irene Newhouse (Sun Jul 15 2007 - 01:01:48 CDT)
- Language definitions - \usepackage{listings} Nuno Loureiro Ferreira (Sat Jul 14 2007 - 10:47:57 CDT)
- Re: Language definitions - \usepackage{listings} John Stone (Mon Jul 16 2007 - 11:58:29 CDT)
- RDF calculations Fred Moore (Fri Jul 13 2007 - 15:16:40 CDT)
- how to save a list in a file sally cii (Fri Jul 13 2007 - 12:02:02 CDT)
- Re: how to save a list in a file Axel Kohlmeyer (Fri Jul 13 2007 - 13:04:16 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Sat Jul 14 2007 - 11:49:29 CDT)
- Re: how to save a list in a file sally cii (Mon Jul 16 2007 - 07:12:14 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 02:57:40 CDT)
- Re: how to save a list in a file sally cii (Tue Jul 17 2007 - 09:09:45 CDT)
- Re: how to save a list in a file John Stone (Tue Jul 17 2007 - 11:08:19 CDT)
- Re: how to save a list in a file sally cii (Tue Jul 17 2007 - 11:58:39 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 12:12:56 CDT)
- Re: how to save a list in a file John Stone (Tue Jul 17 2007 - 12:07:55 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:18:04 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:31:00 CDT)
- Re: how to save a list in a file sally cii (Mon Jul 16 2007 - 07:12:14 CDT)
- Problem with namdstats.tcl in TkCon luca.dallaglio2_at_studio.unibo.it (Fri Jul 13 2007 - 03:12:03 CDT)
- electron density map is shifted? Gunnar Schroeder (Thu Jul 12 2007 - 19:14:01 CDT)
- Electron microscopy surface with VMD? Emmanuel Levy (Thu Jul 12 2007 - 16:37:18 CDT)
- error - with unknown atom type +CA shyamala (Thu Jul 12 2007 - 13:02:04 CDT)
- frame number input in tcl and direct mol graph display update pascal.baillod_at_epfl.ch (Thu Jul 12 2007 - 09:35:45 CDT)
- exporting xyz file Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:38:58 CDT)
- shifting of the origin Bhaskar Jyoti Borah (Tue Jul 10 2007 - 23:49:15 CDT)
- Re: shifting of the origin Axel Kohlmeyer (Wed Jul 11 2007 - 09:22:41 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Wed Jul 11 2007 - 11:24:15 CDT)
- Re: shifting of the origin Axel Kohlmeyer (Wed Jul 11 2007 - 10:49:47 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Wed Jul 11 2007 - 23:33:22 CDT)
- Re: shifting of the origin John Stone (Wed Jul 11 2007 - 23:56:48 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:07:36 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Wed Jul 11 2007 - 11:24:15 CDT)
- Re: shifting of the origin Axel Kohlmeyer (Wed Jul 11 2007 - 09:22:41 CDT)
- displaying velocity from dlpoly history Stern, Julie (Tue Jul 10 2007 - 14:52:37 CDT)
- atomselect sally cii (Tue Jul 10 2007 - 03:03:23 CDT)
- RE: some principles for building a topology file? Irene Newhouse (Mon Jul 09 2007 - 22:45:09 CDT)
- some principles for building a topology file? Irene Newhouse (Mon Jul 09 2007 - 15:27:01 CDT)
- Using multiple CPUS SeongJun Heo (Mon Jul 09 2007 - 14:20:14 CDT)
- need help Bhaskar Jyoti Borah (Mon Jul 09 2007 - 05:25:50 CDT)
- CAVE & Vmd Christian Wohlschlager (Fri Jul 06 2007 - 02:06:54 CDT)
- RMSD of different molecules hori koshii (Thu Jul 05 2007 - 20:50:56 CDT)
- command line dcd to trr? hori koshii (Thu Jul 05 2007 - 20:46:14 CDT)
- calculation limit of gofr? Philipp Sch鰊 (Thu Jul 05 2007 - 10:16:00 CDT)
- Video card query Ignacio Fern醤dez Galv醤 (Thu Jul 05 2007 - 02:34:12 CDT)
- Broken tube drawing method? Claw Isthelaw (Thu Jul 05 2007 - 00:17:37 CDT)
- VRPN, phantom and VMD... Dr. Luis Rosales Leon (Wed Jul 04 2007 - 17:12:38 CDT)
- vmd crashes on startup Arnab Mukherjee (Wed Jul 04 2007 - 16:11:36 CDT)
- How to display boundary crossing bonds? Zhimin Xiong (Tue Jul 03 2007 - 23:58:00 CDT)
- ACE and NH2 凌犴荏轱 郁狨襻觑珧 (Tue Jul 03 2007 - 16:37:43 CDT)
- developing plugins to vmd in python shourabh rawat (Tue Jul 03 2007 - 01:12:22 CDT)
- Display bond between fragment and protein residue Mackay Steffensen (Mon Jul 02 2007 - 12:24:47 CDT)
- VTF file Jakob Petersen (Sun Jul 01 2007 - 13:56:58 CDT)
- Fwd: atom serial number Francesco Pietra (Sun Jul 01 2007 - 02:59:07 CDT)
- atom serial number Francesco Pietra (Sun Jul 01 2007 - 02:33:20 CDT)
- RMSF calculation question: Parminder Mankoo (Sat Jun 30 2007 - 19:09:18 CDT)
- trouble saving the state of two proteins Charlotte J Siska (Fri Jun 29 2007 - 12:45:27 CDT)
- how to calculate hydrogen bond? lily jin (Fri Jun 29 2007 - 12:21:54 CDT)
- Hydrogen and Water Molecules. Yu Liu (Wed Jun 27 2007 - 11:13:40 CDT)
- Away until July 12, self-help encouraged! John Stone (Thu Jun 28 2007 - 17:22:36 CDT)
- vmd and amber Francesco Pietra (Thu Jun 28 2007 - 16:08:37 CDT)
- get charge lily jin (Thu Jun 28 2007 - 12:56:46 CDT)
- generate surface figure Zhenwei Lu (Thu Jun 28 2007 - 11:54:31 CDT)
- glycerol box amit dong (Thu Jun 28 2007 - 11:14:12 CDT)
- Amber patches for Auto PSF generator Bob Johnson (Wed Jun 27 2007 - 11:55:44 CDT)
- error while generating a tetramer using transformation matrix Ruchi Sachdeva (Wed Jun 27 2007 - 01:15:28 CDT)
- angle between protein domains: PARMINDER MANKOO (Tue Jun 26 2007 - 15:46:02 CDT)
- help on making stereo diagram Zhenwei Lu (Tue Jun 26 2007 - 15:25:59 CDT)
- parallel capabilities Jana Black (Tue Jun 26 2007 - 14:27:38 CDT)
- question about ligand volmap Rachel (Tue Jun 26 2007 - 10:56:34 CDT)
- redefining macros vs. update of selections Axel Kohlmeyer (Mon Jun 25 2007 - 19:28:53 CDT)
- ! Obtain degrees from Prestigious non-accredite dUniversities 1(484)993-7152 Marty (Sat Jun 23 2007 - 01:45:28 CDT)
- Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Fri Jun 22 2007 - 17:51:35 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model John Stone (Fri Jun 22 2007 - 17:51:59 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Fri Jun 22 2007 - 20:04:40 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Axel Kohlmeyer (Sat Jun 23 2007 - 09:23:20 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Sat Jun 23 2007 - 10:29:11 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model John Stone (Tue Jun 26 2007 - 15:19:17 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Fri Jun 22 2007 - 20:04:40 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model John Stone (Fri Jun 22 2007 - 17:51:59 CDT)
- Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 13:10:06 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 13:24:30 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 13:50:59 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 13:52:21 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 14:26:12 CDT)
- Re: Loading up PDB files in absolute coordinates Brian Bennion (Fri Jun 22 2007 - 15:34:28 CDT)
- Re: Loading up PDB files in absolute coordinates Giovanni Bellesia (Fri Jun 22 2007 - 14:24:11 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 14:38:42 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 14:38:40 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 15:04:24 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 15:01:26 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 13:50:59 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 13:24:30 CDT)
- Text/Labels on ray tracing external renderer Petrica GASCA (Fri Jun 22 2007 - 09:28:57 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Fri Jun 22 2007 - 13:03:41 CDT)
- Re: Text/Labels on ray tracing external renderer Axel Kohlmeyer (Fri Jun 22 2007 - 14:26:00 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Fri Jun 22 2007 - 15:35:12 CDT)
- Re: Text/Labels on ray tracing external renderer Petrica GASCA (Sat Jun 23 2007 - 06:06:55 CDT)
- Re: Text/Labels on ray tracing external renderer Jay Shore (Sat Jun 23 2007 - 09:31:40 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Tue Jun 26 2007 - 15:25:00 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Tue Jun 26 2007 - 15:06:53 CDT)
- Re: Text/Labels on ray tracing external renderer Ignacio Fern醤dez Galv醤 (Wed Jun 27 2007 - 02:07:23 CDT)
- Re: Text/Labels on ray tracing external renderer Axel Kohlmeyer (Fri Jun 22 2007 - 14:26:00 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Fri Jun 22 2007 - 13:03:41 CDT)
- Rotate dx map Cesar Luis Avila (Thu Jun 21 2007 - 10:03:50 CDT)
- center scaling and rotation Tim Meyer (Thu Jun 21 2007 - 09:35:40 CDT)
- Changing Beta values for each frame of a trajectory.. Arun Krishnan (Wed Jun 20 2007 - 22:08:17 CDT)
- volmap commands Lutz Maibaum (Wed Jun 20 2007 - 20:35:15 CDT)
- Fw: namd-l-outgoing2@halifax.ks.uiuc.edu lily jin (Wed Jun 20 2007 - 15:25:56 CDT)
- Mail System Error - Returned Mail The Post Office (Wed Jun 20 2007 - 12:17:09 CDT)
- Re: atomselection Luis Rosales (Wed Jun 20 2007 - 10:14:56 CDT)
- atomselection Kevser G鲧men Topal (Wed Jun 20 2007 - 02:27:50 CDT)
- Box dimensions Jennie Thomas (Tue Jun 19 2007 - 17:59:53 CDT)
- atomsel: writepdb failed for vmd 1.8.6 Margaret S. Cheung (Tue Jun 19 2007 - 16:16:24 CDT)
- adding residue at start or end Zhenwei Lu (Tue Jun 19 2007 - 10:58:30 CDT)
- VMD for PPC64 SLES9? Mike Hanby (Tue Jun 19 2007 - 10:19:26 CDT)
- Tracking bond length changes in a simulation Adilah Hussien (Tue Jun 19 2007 - 04:33:22 CDT)
- VMD 1.8.6 Not Responding! Vijaya Brahma (Sun Jun 17 2007 - 23:59:06 CDT)
- Re: VMD 1.8.6 Not Responding! Axel Kohlmeyer (Mon Jun 18 2007 - 09:49:47 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Mon Jun 18 2007 - 16:04:51 CDT)
- VMD 1.8.6 Not Responding! Vijaya Brahma (Wed Jun 20 2007 - 23:31:27 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Thu Jun 21 2007 - 00:28:07 CDT)
- Re: VMD 1.8.6 Not Responding! Axel Kohlmeyer (Thu Jun 21 2007 - 10:37:44 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Thu Jun 21 2007 - 10:45:07 CDT)
- Re: VMD 1.8.6 Not Responding! Vijaya Brahma (Thu Jun 21 2007 - 22:40:47 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Thu Jun 21 2007 - 22:58:37 CDT)
- VMD 1.8.6 Not Responding! Vijaya Brahma (Wed Jun 20 2007 - 23:31:27 CDT)
- Solvate 1.2 problem option -ion luca.dallaglio2_at_studio.unibo.it (Thu Jun 14 2007 - 07:02:39 CDT)
- atom position update for reference atom list Philipp Schoen1 (Wed Jun 13 2007 - 08:28:30 CDT)
- superposition lily jin (Tue Jun 12 2007 - 12:05:20 CDT)
- PME plugin Cesar Luis Avila (Tue Jun 12 2007 - 11:18:47 CDT)
- PSFGEN:buiding an uncharged protein luca.dallaglio2_at_studio.unibo.it (Tue Jun 12 2007 - 02:55:14 CDT)
- Paratool Add/Edit Internal Coordinates window Francesco Pietra (Tue Jun 12 2007 - 00:29:05 CDT)
- Question about rendering across multiple frames Prashanth Athri (Mon Jun 11 2007 - 13:51:29 CDT)
- Re: Paratool Window Jan Saam (Mon Jun 11 2007 - 14:22:00 CDT)
- Re: Paratool Window L. Michel Espinoza-Fonseca (Mon Jun 11 2007 - 14:52:14 CDT)
- Paratool Reference (was Re: Paratool Window) Jan Saam (Fri Jun 15 2007 - 11:11:10 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Jacob Poehlsgaard (Tue Aug 21 2007 - 06:18:40 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Peter Freddolino (Tue Aug 21 2007 - 10:01:04 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Francesco Pietra (Tue Aug 21 2007 - 10:29:41 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Jan Saam (Mon Aug 27 2007 - 03:56:34 CDT)
- Paratool Reference (was Re: Paratool Window) Jan Saam (Fri Jun 15 2007 - 11:11:10 CDT)
- Re: Paratool Window L. Michel Espinoza-Fonseca (Mon Jun 11 2007 - 14:52:14 CDT)
- script for atom collisions Kailee (Mon Jun 11 2007 - 12:10:30 CDT)
- Paratool Window Vivek Sharma (Mon Jun 11 2007 - 08:48:07 CDT)
- Nearest neighbor selection Richard Swenson (Mon Jun 11 2007 - 10:23:57 CDT)
- vmd visualization and CMAP run problem Moumita Maiti (Mon Jun 11 2007 - 00:52:23 CDT)
- use animatepdbs.tcl to include APBS potential maps Cesar Millan (Sat Jun 09 2007 - 22:48:02 CDT)
- rmsd calculation for RNA Moumita Maiti (Fri Jun 08 2007 - 11:48:58 CDT)
- Help with Tcl script Manali Mehendale (Fri Jun 08 2007 - 11:09:56 CDT)
- Simple TCL/Tk question Pavan Ghatty (Fri Jun 08 2007 - 11:04:10 CDT)
- problem when drawing a cylinder Zhimin Xiong (Fri Jun 08 2007 - 03:27:28 CDT)
- Python Module Harry Bullen (Thu Jun 07 2007 - 13:00:41 CDT)
- RENDER ISSUES Claire Zerafa (Thu Jun 07 2007 - 08:48:17 CDT)
- rendering problems Claire Zerafa (Thu Jun 07 2007 - 09:37:13 CDT)
- traj not visualized but pdb is visualized Lambert van Eijck (Thu Jun 07 2007 - 04:44:49 CDT)
- .xyz file, namelist index too large error Erkan Tuzel (Wed Jun 06 2007 - 19:39:48 CDT)
- how to visualize Charmm generated files ThuZar Lwin (Wed Jun 06 2007 - 16:38:54 CDT)
- release memory in TCL lily jin (Wed Jun 06 2007 - 14:44:13 CDT)
- changing certain dihedral angles while keeping rest of molecule fixed Himanshu Khandelia (Wed Jun 06 2007 - 04:37:01 CDT)
- Duplicate VMD-L emails... John Stone (Tue Jun 05 2007 - 13:11:26 CDT)
- Fwd: vmd installation Linux Debian i386 Francesco Pietra (Tue Jun 05 2007 - 12:55:05 CDT)
- Re: Fwd: vmd installation Linux Debian i386 John Stone (Tue Jun 05 2007 - 13:02:26 CDT)
- Re: Fwd: vmd installation Linux Debian i386 Francesco Pietra (Tue Jun 05 2007 - 17:47:06 CDT)
- Re: Fwd: vmd installation Linux Debian i386 Axel Kohlmeyer (Tue Jun 05 2007 - 17:43:49 CDT)
- Measuring hbonds between selections from different molecules Arneh Babakhani (Tue Jun 05 2007 - 20:13:15 CDT)
- Re: Measuring hbonds between selections from different molecules Axel Kohlmeyer (Tue Jun 05 2007 - 19:41:24 CDT)
- Re: Measuring hbonds between selections from different molecules Arneh Babakhani (Tue Jun 05 2007 - 20:57:11 CDT)
- Re: Measuring hbonds between selections from different molecules Axel Kohlmeyer (Tue Jun 05 2007 - 20:09:49 CDT)
- Re: Fwd: vmd installation Linux Debian i386 Francesco Pietra (Tue Jun 05 2007 - 17:47:06 CDT)
- Re: Fwd: vmd installation Linux Debian i386 John Stone (Tue Jun 05 2007 - 13:02:26 CDT)
- What is the influence of PBC on measure bond? Philipp Schoen1 (Tue Jun 05 2007 - 09:30:03 CDT)
- VMD-Main window doesn't load after change in .vmdrc Grant Schauer (Mon Jun 04 2007 - 20:22:55 CDT)
- list in TCL lily jin (Mon Jun 04 2007 - 18:47:16 CDT)
- labeling for movie title xiaoqin huang (Mon Jun 04 2007 - 13:21:54 CDT)
- removing water molecules Atila Iamarino (Mon Jun 04 2007 - 13:21:33 CDT)
- load state and alignments Stern, Julie (Mon Jun 04 2007 - 10:56:36 CDT)
- Distance measurement via measure bond Philipp Schoen1 (Mon Jun 04 2007 - 10:32:02 CDT)
- parameters file of POPC SMAHANE CHALABI (Mon Jun 04 2007 - 09:22:30 CDT)
- Installing VMD 1.8.6 Philipp Schoen1 (Mon Jun 04 2007 - 07:54:24 CDT)
- Atom names, RES-IDS...!!! Raul Araya (Fri Jun 01 2007 - 23:55:33 CDT)
- Re: CCL: show ruler in VMD John Stone (Fri Jun 01 2007 - 14:11:07 CDT)
- self-coeeficient diffusion nicolas.floquet_at_univ-reims.fr (Fri Jun 01 2007 - 07:41:27 CDT)
- Using VolMap tool for charge density visualization Bob Johnson (Fri Jun 01 2007 - 09:59:47 CDT)
- Order Parameter Script for changing bilayer normal Richard Swenson (Fri Jun 01 2007 - 09:21:07 CDT)
- Using regular expressions on tcl atomselection Cesar Luis Avila (Thu May 31 2007 - 17:45:32 CDT)
- Electron density profile Cesar Luis Avila (Thu May 31 2007 - 11:30:29 CDT)
- lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) Richard Swenson (Wed May 30 2007 - 14:15:13 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) Axel Kohlmeyer (Wed May 30 2007 - 14:14:08 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) Cesar Luis Avila (Wed Jun 06 2007 - 10:55:19 CDT)
- pqr files---- Raul Araya (Tue May 29 2007 - 16:46:49 CDT)
- overlay Alison Grinthal (Tue May 29 2007 - 15:58:18 CDT)
- Reading in a MOL2 file Mark Zottola (Tue May 29 2007 - 11:31:44 CDT)
- colomb map in volmap tool Raul Araya (Mon May 28 2007 - 17:03:10 CDT)
- overlay Alison Grinthal (Mon May 28 2007 - 06:45:38 CDT)
- ligand parametrization Karol Kaszuba (Mon May 28 2007 - 10:57:05 CDT)
- Problem with bondsrecalc Philippe Roche (Mon May 28 2007 - 11:29:47 CDT)
- Problem with bondsrecalc Philippe Roche (Mon May 28 2007 - 11:33:07 CDT)
- RE: Installation Error Involving TLC Claw Isthelaw (Sun May 27 2007 - 22:37:30 CDT)
- help on trajectory density map Kailee (Sun May 27 2007 - 12:54:12 CDT)
- tkconsole and intel macs Dan Gordon (Sun May 27 2007 - 20:32:11 CDT)
- Fwd: Linux installation issue Francesco Pietra (Sat May 26 2007 - 09:57:40 CDT)
- Fwd: Linux installation issue Francesco Pietra (Sat May 26 2007 - 09:47:51 CDT)
- Linux installation issue Francesco Pietra (Sat May 26 2007 - 09:38:53 CDT)
- problem with installing VMD on a LINUX cluster Yinglong Miao (Fri May 25 2007 - 16:59:11 CDT)
- Installation Error Involving TLC Jana Black (Fri May 25 2007 - 13:44:00 CDT)
- travelling... John Stone (Fri May 25 2007 - 11:00:52 CDT)
- selecting complete residues within perticular distance. naga raju (Fri May 25 2007 - 02:33:28 CDT)
- (no subject) Lechuga, Javier (Fri May 25 2007 - 08:10:27 CDT)
- regarding selecting complete residues within a distance naga raju (Fri May 25 2007 - 04:43:49 CDT)
- fortran/tcl Luca Bellucci (Fri May 25 2007 - 03:13:54 CDT)
- non-standard residue Stern, Julie (Thu May 24 2007 - 21:15:31 CDT)
- How to use remote GLSL rendering capabilities? Cesar Luis Avila (Thu May 24 2007 - 18:02:43 CDT)
- Re: How to use remote GLSL rendering capabilities? Axel Kohlmeyer (Thu May 24 2007 - 17:38:36 CDT)
- Re: How to use remote GLSL rendering capabilities? Cesar Luis Avila (Sun May 27 2007 - 16:05:03 CDT)
- Re: How to use remote GLSL rendering capabilities? Peter Freddolino (Sun May 27 2007 - 18:10:48 CDT)
- Re: How to use remote GLSL rendering capabilities? Axel Kohlmeyer (Mon May 28 2007 - 10:51:07 CDT)
- Re: How to use remote GLSL rendering capabilities? John Stone (Mon May 28 2007 - 15:24:36 CDT)
- Re: How to use remote GLSL rendering capabilities? John Stone (Mon May 28 2007 - 15:32:26 CDT)
- Re: How to use remote GLSL rendering capabilities? Cesar Luis Avila (Sun May 27 2007 - 16:05:03 CDT)
- Re: How to use remote GLSL rendering capabilities? Axel Kohlmeyer (Thu May 24 2007 - 17:38:36 CDT)
- VMD installation Francesco Pietra (Thu May 24 2007 - 16:04:29 CDT)
- Adjusting perspective Cesar Luis Avila (Thu May 24 2007 - 11:33:40 CDT)
- Displaying the periodic box ... St閜hane T閘etch閍 (Thu May 24 2007 - 09:54:25 CDT)
- paratool/gaff Francesco Pietra (Thu May 24 2007 - 01:14:37 CDT)
- questions about developing a plugin Yinglong Miao (Wed May 23 2007 - 15:21:11 CDT)
- Automatic loading of mol2 files FyD (Wed May 23 2007 - 10:42:17 CDT)
- About paratool Francesco Pietra (Wed May 23 2007 - 09:38:40 CDT)
- calculating b-factors from trajectories gozorows_at_uci.edu (Tue May 22 2007 - 17:53:27 CDT)
- Customized radii Manali Joshi (Tue May 22 2007 - 13:04:27 CDT)
- RE: Automatically shutting down VMD after NAMD terminates IMD connection Claw Isthelaw (Sun May 20 2007 - 16:20:30 CDT)
- vmd movies in powerpoint Richard Casey (Sun May 20 2007 - 06:01:02 CDT)
- Automatically shutting down VMD after NAMD terminates IMD connection Claw Isthelaw (Sat May 19 2007 - 13:23:42 CDT)
- volmap command and masks Marc Baaden (Fri May 18 2007 - 17:01:20 CDT)
- Re: custom db in Multiseq John Eargle (Fri May 18 2007 - 11:32:51 CDT)
- help on writing a tcl script Kailee (Fri May 18 2007 - 10:57:58 CDT)
- Need help about hbond and saltbridge s104fendy (Fri May 18 2007 - 03:07:05 CDT)
- the error of the plugin QMTool in read gaussian output file mashaojienuaa (Fri May 18 2007 - 01:08:09 CDT)
- custom db in Multiseq Armen Nalian (Thu May 17 2007 - 18:48:01 CDT)
- Questions on VMD Mark Zottola (Thu May 17 2007 - 16:44:10 CDT)
- inserting protein into membrane baxy (Thu May 17 2007 - 08:39:58 CDT)
- unreadable prmtop's and reference memory error? Stern, Julie (Thu May 17 2007 - 11:47:04 CDT)
- (no subject) Lechuga, Javier (Thu May 17 2007 - 09:40:07 CDT)
- Tachyon renderer zsinkala_at_mtsu.edu (Wed May 16 2007 - 23:03:14 CDT)
- how to make a movie using Principal Component Analysis gadde suneetha (Wed May 16 2007 - 20:02:48 CDT)
- NOC 3.0 is released chenmengen (Wed May 16 2007 - 14:01:37 CDT)
- question about making movies Kailee (Wed May 16 2007 - 11:49:50 CDT)
- absolute C.O.M motion calculation script: help hl332_at_drexel.edu (Wed May 16 2007 - 11:06:45 CDT)
- How to add two parallel confinement wall Zhimin Xiong (Wed May 16 2007 - 04:27:04 CDT)
- help for modification into a small tcl script hl332_at_drexel.edu (Tue May 15 2007 - 10:32:17 CDT)
- how to use measure hbonds to calculate occupancy of all hbonds in simulation? lnubiofox (Tue May 15 2007 - 09:21:33 CDT)
- a gas box SMAHANE CHALABI (Tue May 15 2007 - 06:10:05 CDT)
- RNA Adrian Roitberg (Mon May 14 2007 - 14:25:03 CDT)
- AutoIMD on vmd 1.8.6 IRIX.... Luis Rosales (Fri May 11 2007 - 19:48:16 CDT)
- how to caculate the hydrogen bonds occupancy? lnubiofox (Sun May 13 2007 - 09:38:37 CDT)
- An remark on PoV output Szymon Zietkiewicz (Sat May 12 2007 - 06:45:01 CDT)
- Fast routines for distance evaluations using PBC. Arturas Ziemys (Fri May 11 2007 - 11:52:49 CDT)
- show atom number in xyz file Petrica GASCA (Fri May 11 2007 - 06:49:10 CDT)
- files for air SMAHANE CHALABI (Fri May 11 2007 - 04:01:27 CDT)
- RMSD fitting for molecules adsorbed to surfaces Bob Johnson (Thu May 10 2007 - 16:12:09 CDT)
- a air box SMAHANE CHALABI (Thu May 10 2007 - 08:38:15 CDT)
- Consider fluctuating volume for density Philipp Schoen1 (Thu May 10 2007 - 05:16:57 CDT)
- Fwd: vmd first installation Francesco Pietra (Wed May 09 2007 - 16:59:08 CDT)
- Problem loading pdb file on VMD ren (Wed May 09 2007 - 02:10:48 CDT)
- Re: Problem loading pdb file on VMD John Stone (Wed May 09 2007 - 02:48:42 CDT)
- Re: Problem loading pdb file on VMD Axel Kohlmeyer (Wed May 09 2007 - 07:37:56 CDT)
- pbcunwrap, DL_POLY v 3 Joshua D. Moore (Wed May 09 2007 - 01:37:14 CDT)
- vmd first installation Francesco Pietra (Wed May 09 2007 - 01:24:48 CDT)
- drawing a membrane dimka (Tue May 08 2007 - 15:10:03 CDT)
- SASA measurements Michael S. Marlow (Tue May 08 2007 - 11:17:12 CDT)
- installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Mon May 07 2007 - 21:37:38 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Mon May 07 2007 - 21:44:39 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 12:12:33 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Tue May 08 2007 - 13:44:43 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 14:15:54 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Tue May 08 2007 - 14:20:52 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Dan Wright (Tue May 08 2007 - 16:58:43 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 22:38:01 CDT)
- RE: installing MSMS on OS X 10.4.9 (Intel) Morizono, Hiroki (Wed May 09 2007 - 08:56:52 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Thu May 10 2007 - 20:38:00 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 12:12:33 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Mon May 07 2007 - 21:44:39 CDT)
- autoPSF with a POPC membrane Stephen M. Dutz (Mon May 07 2007 - 19:37:25 CDT)
- color by frame? andrea spitaleri (Mon May 07 2007 - 04:58:40 CDT)
- problem using bigdcd.tcl script does not run beyond the first frame no error reported Himanshu Khandelia (Mon May 07 2007 - 04:42:10 CDT)
- How to align a protein normal to lipid bilayer nur avneet (Sun May 06 2007 - 23:29:45 CDT)
- measure hbonds lanhua (Fri May 04 2007 - 20:57:35 CDT)
- nonbond interaction energy lanhua (Fri May 04 2007 - 12:14:55 CDT)
- How to align a protein normal to lipid bilayer nur avneet (Fri May 04 2007 - 06:33:55 CDT)
- Contribution of selected atoms to surface Brian Smith (Fri May 04 2007 - 03:12:57 CDT)
- Reading additional atom properties Lutz Maibaum (Thu May 03 2007 - 20:07:12 CDT)
- Re: loop in loop - found it lily jin (Thu May 03 2007 - 18:49:47 CDT)
- loop in loop lily jin (Thu May 03 2007 - 18:41:04 CDT)
- (no subject) lanhua (Thu May 03 2007 - 16:30:24 CDT)
- vmd-1:how to merge two proteins (receptor & ligand) kong.winter (Thu May 03 2007 - 16:06:20 CDT)
- measure Hbond lily jin (Thu May 03 2007 - 14:06:19 CDT)
- dumb movie maker question Nichols A. Romero (Thu May 03 2007 - 10:32:26 CDT)
- a water box containing only the absorbent heads of SMAHANE CHALABI (Thu May 03 2007 - 03:11:45 CDT)
- rms fitting problem Myunggi Yi (Wed May 02 2007 - 16:34:04 CDT)
- vmd 1.8.6 on MacOS X, with python support, anyone? Jan Rychter (Mon Apr 30 2007 - 05:39:33 CDT)
- Visualization and reading problems Marcelo Puiatti (Fri Apr 27 2007 - 18:12:44 CDT)
- increase light under depth cueing Vlad Cojocaru (Sat Apr 28 2007 - 17:46:59 CDT)
- Problem with periodic condition Jianhui Tian (Fri Apr 27 2007 - 13:33:26 CDT)
- Re: Problem with periodic condition Axel Kohlmeyer (Fri Apr 27 2007 - 14:42:33 CDT)
- Re: Problem with periodic condition Olaf Lenz (Sat Apr 28 2007 - 13:27:51 CDT)
- Dynamic 'Determine file type' list in main menu !?! Rob (Fri Apr 27 2007 - 01:14:37 CDT)
- vmd problem: session ended Hugh Ferrel Bowen (Thu Apr 26 2007 - 08:46:01 CDT)
- DOWSER: child process exited abnormally Robert Selwyne (Thu Apr 26 2007 - 06:57:03 CDT)
- Fixed number of solvatation water Andrea Cristiani (Wed Apr 25 2007 - 04:56:41 CDT)
- GLSL rendering problems (??) Nichols A. Romero (Tue Apr 24 2007 - 15:40:57 CDT)
- Re: GLSL rendering problems (??) John Stone (Tue Apr 24 2007 - 15:52:30 CDT)
- Re: GLSL rendering problems (??) Nichols A. Romero (Tue Apr 24 2007 - 16:00:20 CDT)
- Re: GLSL rendering problems (??) John Stone (Tue Apr 24 2007 - 16:19:59 CDT)
- Re: GLSL rendering problems (??) Mario Valle (Tue Apr 24 2007 - 22:44:29 CDT)
- Re: GLSL rendering problems (??) John Stone (Wed Apr 25 2007 - 09:53:54 CDT)
- Re: GLSL rendering problems (??) Dow Hurst DPHURST (Mon May 14 2007 - 10:39:14 CDT)
- Re: GLSL rendering problems (??) Axel Kohlmeyer (Mon May 14 2007 - 11:04:34 CDT)
- Re: GLSL rendering problems (??) John Stone (Mon May 14 2007 - 12:42:08 CDT)
- Re: GLSL rendering problems (??) Axel Kohlmeyer (Mon May 14 2007 - 13:03:49 CDT)
- Re: GLSL rendering problems (??) Nichols A. Romero (Tue Apr 24 2007 - 16:00:20 CDT)
- Re: GLSL rendering problems (??) John Stone (Tue Apr 24 2007 - 15:52:30 CDT)
- One Year written repl1ca w4tches warranty Kari Maher (Tue Apr 24 2007 - 15:10:17 CDT)
- Re: Your Val1um 0rder #63504 Donnie Skinner (Tue Apr 24 2007 - 13:01:46 CDT)
- H-bonds amit dong (Tue Apr 24 2007 - 10:58:13 CDT)
- how to reset a timed out connection Amarda Shehu (Tue Apr 24 2007 - 09:23:44 CDT)
- selecting atoms Nichols A. Romero (Tue Apr 24 2007 - 09:55:36 CDT)
- Variable number of atoms in xyz file Ignacio Fern醤dez Galv醤 (Tue Apr 24 2007 - 02:58:20 CDT)
- Cheap 3D Glasses Gustavo Seabra (Mon Apr 23 2007 - 18:07:07 CDT)
- Your Pharm4cy 0rder #2299650 Mary Rudd (Mon Apr 23 2007 - 17:50:29 CDT)
- W4tches from simple to luxurious at Prest1ge Repl1cas Dominique Compton (Mon Apr 23 2007 - 17:51:51 CDT)
- About openning a file to write in callback function preeda (Mon Apr 23 2007 - 12:07:59 CDT)
- tcl code atomselect problem in analysis Jianhui Tian (Mon Apr 23 2007 - 09:24:48 CDT)
- Your Pharm4cy 0rder #3747312 Andres Bynum (Sat Apr 21 2007 - 19:50:21 CDT)
- Misunderstanding about SASA Patrick Redmill (Sat Apr 21 2007 - 10:14:19 CDT)
- Reliable w4tches for everyone at Prest1ge Repl1cas Michele Garrett (Sat Apr 21 2007 - 10:20:56 CDT)
- Your V1agra 0rder #18671 Willie Bray (Sat Apr 21 2007 - 02:54:52 CDT)
- Famous repl1ca w4tches r0lex Cartier Bvlgari Shari Chin (Fri Apr 20 2007 - 23:08:24 CDT)
- Re: Your Val1um 0rder #6578980 Owen Lindsay (Fri Apr 20 2007 - 22:11:49 CDT)
- How to visualize phi maps calculated with delphi V. 4 Cesar Luis Avila (Fri Apr 20 2007 - 18:36:48 CDT)
- process and plot matrix data Vlad Cojocaru (Fri Apr 20 2007 - 04:28:12 CDT)
- Announcement: QM/MM Workshop Axel Kohlmeyer (Thu Apr 19 2007 - 09:14:50 CDT)
- tcl variable withing variable name Vlad Cojocaru (Thu Apr 19 2007 - 07:58:27 CDT)
- How to get the whole H2O molecule in a domain? Philipp Schoen1 (Wed Apr 18 2007 - 11:55:03 CDT)
- secondary_struct script alexandra.marques_at_fc.up.pt (Wed Apr 18 2007 - 11:28:43 CDT)
- vmd can't start up after being installed in linux lanhua (Tue Apr 17 2007 - 23:22:13 CDT)
- Re: vmd can't start up after being installed in linux John Stone (Tue Apr 17 2007 - 22:50:39 CDT)
- Re: vmd can't start up after being installed in linux Axel Kohlmeyer (Tue Apr 17 2007 - 22:01:27 CDT)
- Re: vmd can't start up after being installed in linux Cesar Luis Avila (Wed Apr 18 2007 - 10:54:40 CDT)
- hexagonal box dimka (Tue Apr 17 2007 - 12:11:09 CDT)
- assignment of "measure contacts" output to tcl variables Vlad Cojocaru (Tue Apr 17 2007 - 07:25:19 CDT)
- RE: "which files to make a spatial grid?" => Bug for list command? Philipp Schoen1 (Tue Apr 17 2007 - 07:03:46 CDT)
- Strange characters using writemol2 (vmd 1.8.5) Cesar Luis Avila (Mon Apr 16 2007 - 18:32:28 CDT)
- Tinker trajectory file Esther Brugger (Mon Apr 16 2007 - 16:47:00 CDT)
- Re: Tinker trajectory file John Stone (Mon Apr 16 2007 - 18:27:52 CDT)
- How can i obtain a force and trajectory data of a PHANTOM in IMD simulation preeda (Tue Apr 17 2007 - 09:44:30 CDT)
- Re: How can i obtain a force and trajectory data of a PHANTOM in IMD simulation John Stone (Wed Apr 18 2007 - 16:50:16 CDT)
- Re: How can i obtain a force and trajectory data of a PHANTOM in IMD simulation John Stone (Wed Apr 18 2007 - 16:51:47 CDT)
- About using trace preeda (Fri Apr 20 2007 - 10:04:09 CDT)
- Re: About using trace John Stone (Fri Apr 20 2007 - 12:02:14 CDT)
- How can i obtain a force and trajectory data of a PHANTOM in IMD simulation preeda (Tue Apr 17 2007 - 09:44:30 CDT)
- Re: Tinker trajectory file John Stone (Mon Apr 16 2007 - 18:27:52 CDT)
- how to solvate a molecule with cubic periodic boundary box? Margaret S. Cheung (Mon Apr 16 2007 - 15:46:48 CDT)
- Saving mol2 file Atila Iamarino (Mon Apr 16 2007 - 12:36:00 CDT)
- hbond questions Miguel Ferreira (Mon Apr 16 2007 - 10:10:03 CDT)
- VMD for Windows 64bits Lechuga, Javier (Mon Apr 16 2007 - 10:11:34 CDT)
- which files to make a spatial grid? Philipp Schoen1 (Mon Apr 16 2007 - 07:39:44 CDT)
- writing coordinates of a selection only Myunggi Yi (Sun Apr 15 2007 - 20:51:19 CDT)
- Release of the R.E.D.-III tools FyD (Sun Apr 15 2007 - 05:22:35 CDT)
- Where is the memory leakage? Guo Zhi (Sun Apr 15 2007 - 00:54:48 CDT)
- winvmd error during calculation lanhua (Fri Apr 13 2007 - 23:17:54 CDT)
- GLSL rendering in VMD 1.8.6 Luis Rosales (Fri Apr 13 2007 - 20:18:23 CDT)
- .xyz to .dcd using catdcd Ekta Khurana (Fri Apr 13 2007 - 16:08:51 CDT)
- Re: .xyz to .dcd using catdcd Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
- Re: .xyz to .dcd using catdcd Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
- Re: .xyz to .dcd using catdcd Axel Kohlmeyer (Mon Apr 16 2007 - 19:51:35 CDT)
- Re: .xyz to .dcd using catdcd Peter Freddolino (Mon Apr 16 2007 - 21:31:32 CDT)
- Re: .xyz to .dcd using catdcd Ekta Khurana (Mon Apr 16 2007 - 21:31:42 CDT)
- Re: .xyz to .dcd using catdcd John Stone (Tue Apr 17 2007 - 12:48:12 CDT)
- Re: .xyz to .dcd using catdcd John Stone (Fri Apr 20 2007 - 15:36:36 CDT)
- Re: .xyz to .dcd using catdcd Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
- Re: .xyz to .dcd using catdcd Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
- contact map (over all frames) amit dong (Fri Apr 13 2007 - 15:53:24 CDT)
- compile a plugin source code dbg (Fri Apr 13 2007 - 06:29:59 CDT)
- VMD installation dbg (Fri Apr 13 2007 - 01:09:54 CDT)
- sasa Myunggi Yi (Wed Apr 11 2007 - 21:42:25 CDT)
- mismatch between phi and pdb files Michael Widmann (Tue Apr 10 2007 - 03:07:52 CDT)
- If I want to modify measure.C, what should I do? lanhua (Mon Apr 09 2007 - 15:59:18 CDT)
- I'm sorry ... please ignore the junk !! Vlad Cojocaru (Mon Apr 09 2007 - 05:50:54 CDT)
- Vlad has Tagged you! :) Vlad Cojocaru (Mon Apr 09 2007 - 05:06:39 CDT)
- VMD 1.8.6 GLSL problem daniel aguayo (Mon Apr 09 2007 - 01:08:04 CDT)
- 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL) Charles Cleveland (Sun Apr 08 2007 - 08:05:00 CDT)
- Announce: VMD 1.8.6 Released! John Stone (Sun Apr 08 2007 - 00:51:52 CDT)
- GLSL rendering problems Nichols A. Romero (Thu Apr 05 2007 - 14:41:22 CDT)
- Problem with Reading Binary ccp4 File Generated by CHARMM rossi_at_york.cuny.edu (Thu Apr 05 2007 - 11:32:02 CDT)
- how to connect chains using psfgen Philipp Schoen1 (Wed Apr 04 2007 - 09:49:10 CDT)
- using Grace instead of Multiplot Vlad Cojocaru (Wed Apr 04 2007 - 05:04:36 CDT)
- surface max_density error Jim Fonseca (Tue Apr 03 2007 - 11:25:49 CDT)
- problem using NAMD trajectory in charmm 32-bit, 64-bit etc. (yes, I posted this on charmm lists too) namd vmd (Tue Apr 03 2007 - 07:49:45 CDT)
- VMD for Win32 API based PC CAVE Michal Husak (Mon Apr 02 2007 - 08:00:34 CDT)
- How do I overlap that specific nucletide between a protein and RNA? zhangh1_at_umbc.edu (Sat Mar 31 2007 - 08:43:07 CDT)
- problem during movie making gadde suneetha (Fri Mar 30 2007 - 07:44:48 CDT)
- Can anyone help me out with this script Jianhui Tian (Fri Mar 30 2007 - 14:49:45 CDT)
- 'SURF' representation problem hl332_at_drexel.edu (Thu Mar 29 2007 - 16:04:02 CDT)
- python pro.align() Per Jr. Greisen (Thu Mar 29 2007 - 12:27:21 CDT)
- dcd header information missing Nichols A. Romero (Thu Mar 29 2007 - 10:21:31 CDT)
- Moving volume data with molecule Avell Diroll (Thu Mar 29 2007 - 10:05:40 CDT)
- how to view the dynamics in power point presentation gadde suneetha (Thu Mar 29 2007 - 06:25:29 CDT)
- assigning variable names using a for loop namd vmd (Thu Mar 29 2007 - 03:21:45 CDT)
- doubts in movie making using vmd. gadde suneetha (Wed Mar 28 2007 - 19:05:05 CDT)
- New VMD 1.8.6b15 installer for Windows XP x64... John Stone (Wed Mar 28 2007 - 18:17:29 CDT)
- [vmd-l] Graduate assistanship in Bioinformatics at NCSA Gloria Rendon (Wed Mar 28 2007 - 17:45:25 CDT)
- ion 'channel axis' Adrian Kaats (Wed Mar 28 2007 - 15:55:17 CDT)
- Re: GAMESS plugin bus error Ralph Jimenez (Wed Mar 28 2007 - 15:11:17 CDT)
- How to make a movie in VMD using principle component analysis gadde suneetha (Wed Mar 28 2007 - 07:42:56 CDT)
- write trajectory of selected atoms namd vmd (Wed Mar 28 2007 - 09:51:28 CDT)
- Plugin Issue James Keener (Wed Mar 28 2007 - 09:45:18 CDT)
- FW: rdf using gui syma (Tue Mar 27 2007 - 16:49:06 CDT)
- rdf using gui syma (Tue Mar 27 2007 - 16:18:57 CDT)
- dynamic bonding Zheng Hu (Tue Mar 27 2007 - 14:21:02 CDT)
- representation selection funnies Fred Moore (Tue Mar 27 2007 - 14:06:21 CDT)
- problem creating psf lucie huynh (Tue Mar 27 2007 - 09:54:08 CDT)
- hbond calculation alexandra.marques_at_fc.up.pt (Mon Mar 26 2007 - 15:49:19 CDT)
- PBCTools Plugin Zheng Hu (Mon Mar 26 2007 - 15:14:50 CDT)
- mol load and mol addfile Jianhui Tian (Mon Mar 26 2007 - 15:43:20 CDT)
- hbond analysis jacopo.sgrignani_at_unifi.it (Sat Mar 24 2007 - 11:03:24 CDT)
- can't read pdb file Mary Lowe (Fri Mar 23 2007 - 21:40:18 CDT)
- windows version of VMD Zheng Hu (Fri Mar 23 2007 - 16:35:29 CDT)
- Re: windows version of VMD John Stone (Fri Mar 23 2007 - 17:17:31 CDT)
- Re: windows version of VMD Zheng Hu (Sat Mar 24 2007 - 16:39:43 CDT)
- Re: windows version of VMD Zheng Hu (Sat Mar 24 2007 - 17:03:27 CDT)
- Re: windows version of VMD Zheng Hu (Sun Mar 25 2007 - 15:19:48 CDT)
- Re: windows version of VMD Zheng Hu (Mon Apr 09 2007 - 00:20:11 CDT)
- hbond jacopo.sgrignani_at_unifi.it (Fri Mar 23 2007 - 13:29:57 CDT)
- script to visualize NMR constrains? Marcela Madrid (Fri Mar 23 2007 - 13:45:46 CDT)
- coloring names Fred Moore (Fri Mar 23 2007 - 13:24:37 CDT)
- Draw a circle Abi Ghanem josephine (Fri Mar 23 2007 - 09:47:12 CDT)
- visualizing NMR constrains Marcela Madrid (Thu Mar 22 2007 - 17:14:37 CDT)
- colors Luc Moulinier (Thu Mar 22 2007 - 03:55:26 CDT)
- How to superimpose trajectories Kailee (Wed Mar 21 2007 - 09:14:33 CDT)
- Replica exchange molecular dynamics (REMD) Arindam Ganguly (Tue Mar 20 2007 - 21:22:15 CDT)
- graphic update Myunggi Yi (Tue Mar 20 2007 - 20:09:06 CDT)
- Any way to output contact map data Guo Zhi (Tue Mar 20 2007 - 09:18:03 CDT)
- calculating distance between center of geometry/mass of methyl hydrogens for all residue pairs Zu Thur Yew (Mon Mar 19 2007 - 18:48:41 CDT)
- Scripting problem with h-bond listing Sanjeev (Sun Mar 18 2007 - 01:30:53 CDT)
- question about gofr lanhua (Sat Mar 17 2007 - 14:30:31 CDT)
- Question about overlaying structures Kara Di Giorgio (Thu Mar 15 2007 - 21:16:26 CDT)
- OmpF biological unit Adrian Kaats (Thu Mar 15 2007 - 18:58:17 CDT)
- export Ramachandran datas Jianhui Tian (Thu Mar 15 2007 - 16:16:21 CDT)
- Scripts to unwrap PBC from REMD trajectory Bob Johnson (Thu Mar 15 2007 - 16:08:50 CDT)
- AutoPSF lily jin (Thu Mar 15 2007 - 15:23:32 CDT)
- Average structure Per Jr. Greisen (Thu Mar 15 2007 - 14:14:20 CDT)
- manually creating frames for VMD yalini.pathy_at_yale.edu (Wed Mar 14 2007 - 17:11:58 CDT)
- Measuring specific distances over a trajectory Patrick Wintrode (Wed Mar 14 2007 - 16:06:30 CDT)
- molecule orientation in saved state Subramanian Vaitheeswaran (Wed Mar 14 2007 - 12:21:53 CDT)
- how to set atom index Guo Zhi (Wed Mar 14 2007 - 10:33:57 CDT)
- VMD 1.8.6b binaries for win32? Jacob Poehlsgaard (Wed Mar 14 2007 - 10:14:45 CDT)
- Calculate End-End distance for DCD Jianhui Tian (Tue Mar 13 2007 - 15:17:00 CDT)
- Problems running APBS Per Jr. Greisen (Tue Mar 13 2007 - 13:32:04 CDT)
- NAMD Energy - Hexagonal Cell Alessandro Cembran (Mon Mar 12 2007 - 18:10:14 CDT)
- ed and vmd Nadine Utz (Abt. Koslowski) (Mon Mar 12 2007 - 12:58:49 CDT)
- vmd on core 2 duo matteus.lindgren_at_chem.umu.se (Mon Mar 12 2007 - 03:26:30 CDT)
- How to specify the orientation of the molecule zhangh1_at_umbc.edu (Sun Mar 11 2007 - 19:39:45 CDT)
- Movie Maker: How to specify use of trajectory in the movie script file Shatadal Ghosh (Sat Mar 10 2007 - 01:43:42 CST)
- VolumeSlices Pawel Wielgus (Fri Mar 09 2007 - 09:27:17 CST)
- VMD_orient pkmukher (Thu Mar 08 2007 - 21:36:49 CST)
- Memory problems with Multiseq Marcelo Puiatti (Thu Mar 08 2007 - 17:21:27 CST)
- VMD Rex Palmer (Thu Mar 08 2007 - 05:29:14 CST)
- OpenGL problem Rene Salmon (Tue Mar 06 2007 - 16:03:19 CST)
- DCD for windows lily jin (Tue Mar 06 2007 - 15:25:40 CST)
- Locating channel using hole Subramanian Vaitheeswaran (Tue Mar 06 2007 - 12:11:23 CST)
- unusual residue type problem.. hl332_at_drexel.edu (Tue Mar 06 2007 - 11:38:08 CST)
- Re: Where to find cholesterol ester in PDB format Peter Engelhardt (Tue Mar 06 2007 - 03:56:26 CST)
- Configuration file Rita Cassia (Tue Mar 06 2007 - 06:37:47 CST)
- BPS Meeting @ Baltimore bora erdemli (Mon Mar 05 2007 - 19:16:40 CST)
- read the pdb file using VMD Esther Brugger (Mon Mar 05 2007 - 17:00:36 CST)
- vmd core dump on IRIX Rene Salmon (Mon Mar 05 2007 - 16:16:01 CST)
- reading charmm files Grazia Daminelli (Mon Mar 05 2007 - 07:48:22 CST)
- New Molecule (or Load Data) resets viewpoint of Display. Why? Rob (Sun Mar 04 2007 - 21:27:14 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? Axel Kohlmeyer (Mon Mar 05 2007 - 05:24:25 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? John Stone (Mon Mar 05 2007 - 17:06:29 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? Rob (Tue Mar 06 2007 - 03:28:56 CST)
- E-D stereo glasses aneamtu_at_iasi.mednet.ro (Sat Mar 03 2007 - 04:44:51 CST)
- Compiling VMD from source on SDSC Datastar (AIX 5.2) Philip Blood (Fri Mar 02 2007 - 17:09:25 CST)
- vmd/gaussian cubes Adrian Roitberg (Fri Mar 02 2007 - 10:11:08 CST)
- Calculating dipole moment of protein Per Jr. Greisen (Fri Mar 02 2007 - 06:26:23 CST)
- Updating atomselection from frame to frame Jawahar Neelankatan (Fri Mar 02 2007 - 06:19:38 CST)
- Colouring Atoms according to the centro-symmetric parameter Epiphaniou, Nicholas (Thu Mar 01 2007 - 12:59:00 CST)
- Transform pdb files in psf files using VMD In阺 Sousa (Thu Mar 01 2007 - 04:35:44 CST)
- convert tcl to python Per Jr. Greisen (Thu Mar 01 2007 - 05:54:18 CST)
- calculation of free energy between lipid membrane and protein Shulin Zhuang (Thu Mar 01 2007 - 00:17:25 CST)
- Delete Volume Maps via Script Bob Johnson (Wed Feb 28 2007 - 18:36:43 CST)
- morph christopher (Wed Feb 28 2007 - 16:18:48 CST)
- count variable number of molecules Alexandr Isayev (Wed Feb 28 2007 - 14:23:11 CST)
- multiple dx frames Jim Fonseca (Wed Feb 28 2007 - 13:49:12 CST)
- Calculate VolMap for every frame by a script Bob Johnson (Tue Feb 27 2007 - 16:21:12 CST)
- VMD open GL Display problem Ay㧐 謟lem Sezerman (Tue Feb 27 2007 - 06:52:19 CST)
- Cave and usr keys defined in tcl Christian Wohlschlager (Tue Feb 27 2007 - 05:46:38 CST)
- rmsf calculations bora erdemli (Tue Feb 27 2007 - 01:42:25 CST)
- bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 16:24:53 CST)
- Re: bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
- Re: Re: bug report in VMD 1.8.5 John Stone (Mon Feb 26 2007 - 16:41:14 CST)
- Re: Re: bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 17:03:54 CST)
- Re: Re: bug report in VMD 1.8.5 John Stone (Tue Feb 27 2007 - 12:48:46 CST)
- Re: Re: bug report in VMD 1.8.5 Nichols A. Romero (Wed Feb 28 2007 - 14:10:47 CST)
- Re: Re: bug report in VMD 1.8.5 Leonardo Trabuco (Wed Feb 28 2007 - 14:15:11 CST)
- Re: Re: bug report in VMD 1.8.5 Axel Kohlmeyer (Mon Feb 26 2007 - 17:26:38 CST)
- Re: Re: bug report in VMD 1.8.5 John Stone (Mon Feb 26 2007 - 16:41:14 CST)
- Re: bug report in VMD 1.8.5 Jerome Henin (Mon Feb 26 2007 - 19:32:29 CST)
- Re: bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
- lipid headgroup analysis syma (Mon Feb 26 2007 - 04:38:35 CST)
- Tracing VMD variables Olaf Lenz (Mon Feb 26 2007 - 08:10:03 CST)
- IC from paratool Grazia Daminelli (Mon Feb 26 2007 - 02:35:27 CST)
- Question about RDF of VMD Jianhui Tian (Sat Feb 24 2007 - 20:33:13 CST)
- "get {x y z}" returns single value Ivan Degtyarenko (Fri Feb 23 2007 - 10:18:16 CST)
- transparent background in vmd Omololu (Fri Feb 23 2007 - 10:11:24 CST)
- Number of Frames in VMD Rita Cassia (Fri Feb 23 2007 - 07:48:39 CST)
- Same pdb file, different image Hai-Jun Su (Thu Feb 22 2007 - 22:11:27 CST)
- cube file: coordinates rotated Yaser Khan (Wed Feb 21 2007 - 20:05:32 CST)
- (no subject) Stephen M. Dutz (Wed Feb 21 2007 - 15:40:45 CST)
- Nanopore simulation subhasish chatterjee (Tue Feb 20 2007 - 21:58:54 CST)
- superimposing two structures and getting the coordinates bertrand russell (Tue Feb 20 2007 - 11:52:03 CST)
- Isosurface rendering Avell Diroll (Tue Feb 20 2007 - 08:52:35 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 10:44:36 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 12:53:21 CST)
- Re: Isosurface rendering Avell Diroll (Wed Feb 21 2007 - 06:42:05 CST)
- Re: Isosurface rendering Axel Kohlmeyer (Wed Feb 21 2007 - 09:44:21 CST)
- Re: Isosurface rendering John Stone (Wed Feb 21 2007 - 11:45:22 CST)
- Re: Isosurface rendering Axel Kohlmeyer (Wed Feb 21 2007 - 11:54:12 CST)
- Re: Isosurface rendering John Stone (Wed Feb 21 2007 - 17:21:10 CST)
- Re: Isosurface rendering Avell Diroll (Thu Feb 22 2007 - 08:11:28 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 12:53:21 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 10:44:36 CST)
- Fwd: generating COORDINATE FILES PREETA DATTA (Tue Feb 20 2007 - 07:22:53 CST)
- generating PREETA DATTA (Tue Feb 20 2007 - 07:19:13 CST)
- a question about paratool Javaria Ahmad (Tue Feb 20 2007 - 06:35:52 CST)
- syntax error in com file Javaria Ahmad (Tue Feb 20 2007 - 06:15:49 CST)
- PC-gamess Per Jr. Greisen (Tue Feb 20 2007 - 05:02:45 CST)
- Anyone have cyclic structures I can use for testing? John Stone (Tue Feb 20 2007 - 01:28:29 CST)
- Files closing/Memory issues in VMD Alexander Balaeff (Mon Feb 19 2007 - 14:03:54 CST)
- Research Position Openings Mike Smith (Sun Feb 18 2007 - 03:45:19 CST)
- hbonds problem alexandra.marques_at_fc.up.pt (Sat Feb 17 2007 - 17:52:45 CST)
- Strange MOL2 export Mario Valle (Sat Feb 17 2007 - 12:21:42 CST)
- Small annoyance with tachion Mario Valle (Sat Feb 17 2007 - 11:34:46 CST)
- stereo view Osmany Guirola Cruz (Fri Feb 16 2007 - 14:06:43 CST)
- building bilayer with DOPC or other lipids PREETA DATTA (Fri Feb 16 2007 - 04:29:41 CST)
- Measure atoms volume on VMD Cesar Luis Avila (Thu Feb 15 2007 - 15:27:53 CST)
- 3D grid data to 2D contour? Ivan Degtyarenko (Thu Feb 15 2007 - 15:04:05 CST)
- problem with autopsf L. Michel Espinoza-Fonseca (Thu Feb 15 2007 - 07:44:18 CST)
- TCl question: preventing STDOUT namd vmd (Thu Feb 15 2007 - 05:59:50 CST)
- aligning one molecule s.schweizer_at_dkfz-heidelberg.de (Wed Feb 14 2007 - 08:47:41 CST)
- Bug in the tcl script greddy1_at_umd.edu (Tue Feb 13 2007 - 13:18:58 CST)
- GL window offset problem christopher (Mon Feb 12 2007 - 15:09:55 CST)
- average structure dimka (Mon Feb 12 2007 - 13:42:33 CST)
- aligning molecules with different number of atoms namd vmd (Mon Feb 12 2007 - 11:53:49 CST)
- ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 10:58:32 CST)
- Re: ionize (big, big, big system!) Peter Freddolino (Mon Feb 12 2007 - 11:07:50 CST)
- Re: ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 11:19:57 CST)
- Re: namd-l: Re: ionize (big, big, big system!) Alessandro Cembran (Mon Feb 12 2007 - 11:37:20 CST)
- Re: namd-l: Re: ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 17:49:25 CST)
- Re: namd-l: Re: ionize (big, big, big system!) Alessandro Cembran (Mon Feb 12 2007 - 18:57:05 CST)
- Re: ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 11:19:57 CST)
- Re: ionize (big, big, big system!) Peter Freddolino (Mon Feb 12 2007 - 11:07:50 CST)
- atomselection: number of residues namd vmd (Sun Feb 11 2007 - 06:35:17 CST)
- hot keys & save state Yaser Khan (Sun Feb 11 2007 - 03:01:40 CST)
- VMD-1.8.5: GLSL & NVidia troubles + fixed previous Spaceball problem Pietro Amodeo (Sat Feb 10 2007 - 05:59:42 CST)
- Bug in the Tcl script greddy1_at_umd.edu (Fri Feb 09 2007 - 19:51:24 CST)
- load in multiple files once Hai-Jun Su (Fri Feb 09 2007 - 15:53:18 CST)
- question about rotations Adrian Roitberg (Fri Feb 09 2007 - 08:33:34 CST)
- Changing the display window size in a script Ignacio Fern醤dez Galv醤 (Fri Feb 09 2007 - 02:37:02 CST)
- How to save the snapshot of my protein? bertrand russell (Fri Feb 09 2007 - 01:24:54 CST)
- Assigning Color Codes for stress/force in .xyz trajectory files Adrian Koh (Fri Feb 09 2007 - 00:08:26 CST)
- Making interactive 3-D PDF files using VMD 1.8.6 beta 7 John Stone (Thu Feb 08 2007 - 18:11:53 CST)
- H-Bond in VMD Esther Brugger (Thu Feb 08 2007 - 10:48:38 CST)
- viewpoint Levin, Andrew Michael (Thu Feb 08 2007 - 09:17:48 CST)
- viewpoint Levin, Andrew Michael (Thu Feb 08 2007 - 09:19:16 CST)
- viewpoint Levin, Andrew Michael (Thu Feb 08 2007 - 09:18:01 CST)
- Saving work in VMD--this seems ridiculously difficult! wolfinbm_at_uci.edu (Thu Feb 08 2007 - 16:09:52 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! L. Michel Espinoza-Fonseca (Thu Feb 08 2007 - 17:13:52 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! John Stone (Thu Feb 08 2007 - 18:34:34 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! Cesar Luis Avila (Thu Feb 08 2007 - 20:53:30 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! Axel Kohlmeyer (Fri Feb 09 2007 - 10:52:01 CST)
- Saving work in VMD--this seems ridiculously difficult! wolfinbm_at_uci.edu (Thu Feb 08 2007 - 16:09:52 CST)
- surface area emra Heshmati (Wed Feb 07 2007 - 22:40:56 CST)
- stride failed Tsu-Fan Cheng (Wed Feb 07 2007 - 15:23:08 CST)
- file "top_all22_prot.inp" Hai-Jun Su (Tue Feb 06 2007 - 20:26:53 CST)
- H-Bond display in VMD Esther Brugger (Tue Feb 06 2007 - 12:41:47 CST)
- splitting segments namd vmd (Tue Feb 06 2007 - 11:06:15 CST)
- Re: about CHARMM electrostatic potential ivana adamovic (Mon Feb 05 2007 - 14:44:51 CST)
- indented atomselect variables namd vmd (Mon Feb 05 2007 - 14:30:48 CST)
- too large an area/lipid in POPE bilayers using membrane plugin Himanshu Khandelia (Mon Feb 05 2007 - 11:50:04 CST)
- rendering time bars or other vmd added graphics with povray Vlad Cojocaru (Mon Feb 05 2007 - 10:58:48 CST)
- about CHARMM electrostaic potential ivana adamovic (Mon Feb 05 2007 - 09:46:47 CST)
- volume slices Jim Fonseca (Sun Feb 04 2007 - 14:32:11 CST)
- cartoon problems (encore) christopher (Sat Feb 03 2007 - 15:29:56 CST)
- Units for Measure Dipole Kim Gunnerson (Fri Feb 02 2007 - 16:51:16 CST)
- Atomselect on several molecules Veronika Brazdova (Fri Feb 02 2007 - 10:04:22 CST)
- Using "membrane package" with different lipid molecules Lechuga, Javier (Fri Feb 02 2007 - 09:18:06 CST)
- creating gif animation with povray Vlad Cojocaru (Fri Feb 02 2007 - 04:09:12 CST)
- VMD performance on Vista Christoph Weber (Thu Feb 01 2007 - 16:23:58 CST)
- sending arguments to tcl _at_huji.ac.il (Thu Feb 01 2007 - 13:39:20 CST)
- addition on CHARMM electrostatic pot. ivana adamovic (Thu Feb 01 2007 - 13:42:08 CST)
- CHARMM electrostatic potential ivana adamovic (Thu Feb 01 2007 - 13:17:21 CST)
- CHARMM electrostatic potential ivana adamovic (Thu Feb 01 2007 - 08:28:20 CST)
- Re: CHARMM electrostatic potential John Stone (Thu Feb 01 2007 - 11:16:38 CST)
- Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' Arneh Babakhani (Fri Feb 02 2007 - 16:16:04 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' John Stone (Fri Feb 02 2007 - 16:21:44 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' Arneh Babakhani (Fri Feb 02 2007 - 20:04:29 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' John Stone (Sat Feb 03 2007 - 00:45:58 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' Axel Kohlmeyer (Sat Feb 03 2007 - 06:31:49 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' Arneh Babakhani (Sun Feb 04 2007 - 21:58:19 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' John Stone (Mon Feb 05 2007 - 10:04:31 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' Arneh Babakhani (Mon Feb 05 2007 - 10:59:04 CST)
- Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' Arneh Babakhani (Fri Feb 02 2007 - 16:16:04 CST)
- Re: CHARMM electrostatic potential John Stone (Thu Feb 01 2007 - 11:16:38 CST)
- VMD error messages on intel iMac Craig C. Martens (Wed Jan 31 2007 - 23:32:32 CST)
- uNABLE TO OPEN VMD ON WINDOWS 2K Caio Julio Martins Veloso (Wed Jan 31 2007 - 21:38:03 CST)
- animate write of a selection in Linux version of VMD Pawel Weronski (Wed Jan 31 2007 - 15:54:25 CST)
- DNA and low pH Gaurav Sharma (Wed Jan 31 2007 - 15:06:46 CST)
- Volume Slice Adrian Roitberg (Wed Jan 31 2007 - 15:07:45 CST)
- About CHARMM electrostaic potential map ivana adamovic (Wed Jan 31 2007 - 09:26:19 CST)
- Announce: New VMD Images and Movies tutorial posted online... John Stone (Wed Jan 31 2007 - 00:23:46 CST)
- Delete frames in a script Ran Friedman (Tue Jan 30 2007 - 06:12:14 CST)
- RE: Delete frames in a script Ana Celia Araujo Vila Verde (Tue Jan 30 2007 - 10:08:50 CST)
- Compute the angle between a vector and the largest inertia axis Prevost Martine (Tue Jan 30 2007 - 04:15:03 CST)
- Re: Add transparent plane to molecular Rob (Tue Jan 30 2007 - 09:05:36 CST)
- Add transparent plane to molecular structure Rob (Mon Jan 29 2007 - 20:57:38 CST)
- Python development Mikolai Fajer (Mon Jan 29 2007 - 16:39:00 CST)
- an old...old..old..question Tsu-Fan Cheng (Mon Jan 29 2007 - 16:24:16 CST)
- smd analysis Narender Singh Maan (Mon Jan 29 2007 - 14:47:02 CST)
- GLSL error Dow Hurst DPHURST (Mon Jan 29 2007 - 14:40:14 CST)
- Skip frames in writing shorter trajectory Neelanjana Sengupta (Mon Jan 29 2007 - 11:56:10 CST)
- Re: Regarding paratool, assign atom types Jan Saam (Mon Jan 29 2007 - 10:56:30 CST)
- Pls help, Q abt PDB->PSF Stanley, Yemin Shi (Sat Jan 27 2007 - 21:55:02 CST)
- [vmd] K3b bug? christopher (Sat Jan 27 2007 - 07:12:57 CST)
- draw line Narender Singh Maan (Fri Jan 26 2007 - 17:01:14 CST)
- history in tcl/tk script Rita Cassia (Fri Jan 26 2007 - 06:22:32 CST)
- wildcards in atomselect command Himanshu Khandelia (Fri Jan 26 2007 - 05:47:02 CST)
- How can I find the rotation matrix information? Myunggi Yi (Thu Jan 25 2007 - 16:11:12 CST)
- (no subject) Prevost Martine (Thu Jan 25 2007 - 04:41:37 CST)
- Error when compiling Plugins from source code Epiphaniou, Nicholas (Thu Jan 25 2007 - 04:57:09 CST)
- Installing VMD on a PC Trinh Vo (Wed Jan 24 2007 - 18:58:06 CST)
- Molefacture error Javaria Ahmed (Wed Jan 24 2007 - 17:01:09 CST)
- Regarding paratool Javaria Ahmed (Wed Jan 24 2007 - 16:18:01 CST)
- Re: Regarding paratool John Stone (Fri Jan 26 2007 - 02:10:24 CST)
- Re: Regarding paratool Jan Saam (Wed Jan 31 2007 - 14:14:01 CST)
- Regarding com file error Javaria Ahmed (Sun Feb 04 2007 - 23:23:40 CST)
- Re: Regarding com file error John Stone (Mon Feb 05 2007 - 10:01:01 CST)
- Re: Regarding com file error Jan Saam (Mon Feb 05 2007 - 12:57:27 CST)
- Re: Regarding com file error Axel Kohlmeyer (Mon Feb 05 2007 - 12:20:12 CST)
- Re: Re: Regarding com file error Javaria Ahmad (Wed Feb 07 2007 - 16:10:15 CST)
- Re: Re: Re: Regarding com file error JC Gumbart (Wed Feb 07 2007 - 16:32:46 CST)
- Re: Regarding paratool Jan Saam (Wed Jan 31 2007 - 14:14:01 CST)
- Re: Regarding paratool Jan Saam (Mon Jan 29 2007 - 11:00:14 CST)
- Re: Regarding paratool John Stone (Fri Jan 26 2007 - 02:10:24 CST)
- question on spin density Robert fiske (Wed Jan 24 2007 - 14:00:32 CST)
- RE: measure XYZ dimensions of a system Akshay Patny (Wed Jan 24 2007 - 12:47:47 CST)
- measure XYZ dimensions of a system Akshay Patny (Wed Jan 24 2007 - 10:47:00 CST)
- vector Vivek Sharma (Wed Jan 24 2007 - 04:14:28 CST)
- how to run membrane.tcl from user-defined location ? Himanshu Khandelia (Wed Jan 24 2007 - 05:54:51 CST)
- Getting (or changing) molinfo matrices Jancs Istv醤 (Wed Jan 24 2007 - 03:49:28 CST)
- [Fwd: pdb from trajectory] some clarification _at_huji.ac.il (Tue Jan 23 2007 - 09:41:49 CST)
- pdb from trajectory _at_huji.ac.il (Tue Jan 23 2007 - 09:16:29 CST)
- hingefind Shirley Li (Mon Jan 22 2007 - 18:54:11 CST)
- Converting Files with VMD mr.ibid_at_gmail.com (Sat Jan 20 2007 - 04:33:56 CST)
- CGTools Plugin Ugur Akgun (Fri Jan 19 2007 - 13:59:31 CST)
- rotation to align Himanshu Khandelia (Fri Jan 19 2007 - 05:41:31 CST)
- H-bond energy amit dong (Thu Jan 18 2007 - 18:13:11 CST)
- Solvent accessibility with sasa Peter Hains (Thu Jan 18 2007 - 15:34:16 CST)
- renumbering residues after deletion of atoms Himanshu Khandelia (Thu Jan 18 2007 - 09:55:07 CST)
- Large Molecule in CAVE Enviroment Christian Wohlschlager (Thu Jan 18 2007 - 01:35:06 CST)
- Tk console issues Eric Peterson (Wed Jan 17 2007 - 15:48:58 CST)
- Loading DCD files Vishal Kopard (Wed Jan 17 2007 - 13:19:27 CST)
- VMD quits Vishal Kopard (Wed Jan 17 2007 - 12:50:07 CST)
- how to read in a multi-segment psf/pdb pair into vmd Himanshu Khandelia (Wed Jan 17 2007 - 05:49:13 CST)
- How to change title of display window? Rob (Wed Jan 17 2007 - 01:13:23 CST)
- Re: How to change title of display window? John Stone (Wed Jan 17 2007 - 01:27:52 CST)
- Re: How to change title of display window? JT (Sun Jan 25 2009 - 20:09:35 CST)
- Re: Re: How to change title of display window? Axel Kohlmeyer (Sun Jan 25 2009 - 21:08:18 CST)
- Re: Re: How to change title of display window? Axel Kohlmeyer (Mon Jan 26 2009 - 12:13:13 CST)
- Re: Re: How to change title of display window? JT (Mon Jan 26 2009 - 12:26:30 CST)
- turn off the 'are you sure you want to quit' sound Taufik Al-Sarraj (Fri Jan 30 2009 - 15:49:32 CST)
- Re: turn off the 'are you sure you want to quit' sound John Stone (Fri Jan 30 2009 - 16:01:04 CST)
- Re: Re: How to change title of display window? Axel Kohlmeyer (Sun Jan 25 2009 - 21:08:18 CST)
- VMD forks to background; can I disable this? Rob (Wed Jan 17 2007 - 00:33:27 CST)
- MSMS on Windows Peter Hains (Tue Jan 16 2007 - 23:21:52 CST)
- loading molecules with increasing number of backbone atoms in VMD wurl (Tue Jan 16 2007 - 19:39:42 CST)
- scripts in windows version wurl (Tue Jan 16 2007 - 19:31:40 CST)
- Free Webinar: Vendor Neutral Intro to Data Mining for Absolute Beginners, January 26, 2007 Lisa Solomon (Mon Jan 15 2007 - 22:55:13 CST)
- script to load dcds from Replica Exchange simulations by Temperature Ana Celia Araujo Vila Verde (Mon Jan 15 2007 - 17:30:44 CST)
- Windows/Cannot generate .dx file! Georgios Villias (Mon Jan 15 2007 - 10:12:43 CST)
- VMD scene information Eric Peterson (Wed Jan 10 2007 - 12:23:29 CST)
- plot the box margins wurl (Wed Jan 10 2007 - 02:40:35 CST)
- changing frame Myunggi Yi (Tue Jan 09 2007 - 22:15:11 CST)
- Re: Antw: Re: Unaligned access to ... John Stone (Tue Jan 09 2007 - 14:18:54 CST)
- Why does lipid move out of water box Nitin Bhardwaj (Tue Jan 09 2007 - 11:29:24 CST)
- [Fwd: Re: create new topology file for new molecule] Peter Freddolino (Tue Jan 09 2007 - 11:11:04 CST)
- create new topology file for new molecule _at_huji.ac.il (Tue Jan 09 2007 - 10:06:25 CST)
- Grab tool: picking problems Martijn Kragtwijk (Tue Jan 09 2007 - 09:55:52 CST)
- question about setting variables in a loop Brian Kidd (Mon Jan 08 2007 - 22:01:12 CST)
- sasa by residue alexandra.marques_at_fc.up.pt (Mon Jan 08 2007 - 19:01:04 CST)
- Anyone have catdcd-4.0 for BlueGene? Joshua D. Moore (Mon Jan 08 2007 - 15:34:09 CST)
- how to use 'lreplace' of 2D array? Myunggi Yi (Mon Jan 08 2007 - 11:58:26 CST)
- Problem with a tcl script: probable memory overload Leonardo Sepulveda Dur醤 (Mon Jan 08 2007 - 09:05:01 CST)
- Unaligned access to ... Christian Wohlschlager (Mon Jan 08 2007 - 02:57:56 CST)
- error message using gofr OMAR NABEEL ALY DEMERDASH (Fri Jan 05 2007 - 16:03:12 CST)
- "Not all atoms have unique coordinates" Nitin Bhardwaj (Fri Jan 05 2007 - 12:31:18 CST)
- Save coordinates from MD simulation Per Jr. Greisen (Thu Jan 04 2007 - 10:55:34 CST)
- Removing water in tcl Cesar Luis Avila (Thu Jan 04 2007 - 10:23:15 CST)
- using namdenergy with amber prmtop file Nitin Bhardwaj (Wed Jan 03 2007 - 18:06:20 CST)
- Re: Fwd: Writing pdb without chain identifier John Stone (Wed Jan 03 2007 - 10:31:05 CST)
- Re: Vizualization Problem while opening DX file John Stone (Wed Jan 03 2007 - 10:03:25 CST)
- Install and Configure Problems christopher (Wed Jan 03 2007 - 08:57:14 CST)
- Load last frame of dcd on TKconsole (how?) hori koshii (Sat Dec 30 2006 - 19:20:00 CST)
- Re: PET force field & topolgy files wolfinbm_at_uci.edu (Wed Dec 27 2006 - 17:24:59 CST)
- RE: (); [Fwd: PET force field & topolgy files etc.] wolfinbm_at_uci.edu (Wed Dec 27 2006 - 14:23:22 CST)
- Writing pdb without chain identifier Cesar Luis Avila (Tue Dec 26 2006 - 14:49:45 CST)
- recenter peptide in PBC _at_huji.ac.il (Tue Dec 26 2006 - 04:54:20 CST)
- box information amber crdbox Myunggi Yi (Fri Dec 22 2006 - 17:24:19 CST)
- vmd questions _at_huji.ac.il (Thu Dec 21 2006 - 05:09:59 CST)
- Re: Trying to Build a Membrane w/conical pore out of PET (polyethylene terephthalate) wolfinbm_at_uci.edu (Fri Dec 22 2006 - 14:29:56 CST)
- Re: Trying to Build a Membrane w/conical pore out of PET (polyethylene terephthalate) Peter Freddolino (Sat Dec 23 2006 - 01:02:19 CST)
- Re: Trying to Build a Membrane w/conical pore out of PET (polyethylene terephthalate) wolfinbm_at_uci.edu (Sun Dec 24 2006 - 14:35:08 CST)
- Trying to Build a Membrane w/conical pore out of PET (polyethylene terephthalate) wolfinbm_at_uci.edu (Fri Dec 22 2006 - 12:48:36 CST)
- Voicemail from Pavan Ghatty (5 seconds) pavan.vmd_at_gmail.com (Thu Dec 21 2006 - 18:17:51 CST)
- pdb file Rita Cassia (Thu Dec 21 2006 - 05:53:15 CST)
- VMD 1.8.5 installed. The graphics flashed and disappeared after installation. Margaret S. Cheung (Wed Dec 20 2006 - 12:00:11 CST)
- average z-coordinate of a selection Nitin Bhardwaj (Tue Dec 19 2006 - 10:54:29 CST)
- VMD using CygWin? Christer Svanberg (Tue Dec 19 2006 - 07:29:15 CST)
- Stride Neelanjana Sengupta (Mon Dec 18 2006 - 23:14:22 CST)
- md simulation of a protein and a ligand Robert Kretschmer (Mon Dec 18 2006 - 12:55:20 CST)
- CAVE Sensor Question Christian Wohlschlager (Mon Dec 18 2006 - 01:28:53 CST)
- VMD email support next two weeks John Stone (Sun Dec 17 2006 - 21:19:42 CST)
- How to let vmd do secondary structure judgement for each frame and render it on play movie? Guo Zhi (Fri Dec 15 2006 - 22:47:23 CST)
- Re: "cartoon" failing to show secondary structure--more info Kenley Barrett (Fri Dec 15 2006 - 12:39:54 CST)
- moveby command in vmd Nuno Ricardo Loureiro Ferreira (Fri Dec 15 2006 - 10:42:36 CST)
- moveby command in vmd Mohamed Osman (Fri Dec 15 2006 - 09:36:43 CST)
- "cartoon" failing to show secondary structure Kenley Barrett (Thu Dec 14 2006 - 18:31:09 CST)
- vmd-xplor installation Lei Shi (Thu Dec 14 2006 - 18:16:38 CST)
- electrostatic potential ivana adamovic (Wed Dec 13 2006 - 14:15:09 CST)
- How to make movie with .crd files? bertrand russell (Wed Dec 13 2006 - 02:36:23 CST)
- Diffusion constant Myunggi Yi (Tue Dec 12 2006 - 17:26:22 CST)
- Correlation Functions Juan Diaz (Tue Dec 12 2006 - 14:39:52 CST)
- Correlation Functions Juan Diaz (Tue Dec 12 2006 - 13:29:49 CST)
- Question about RMSD calculator Kara Di Giorgio (Tue Dec 12 2006 - 13:16:32 CST)
- Calculating changes Per Jr. Greisen (Tue Dec 12 2006 - 12:56:37 CST)
- Thank you for you answere the folowing is the .vmdsensor file Christian Wohlschlager (Tue Dec 12 2006 - 06:06:52 CST)
- CAVE Question Christian Wohlschlager (Mon Dec 11 2006 - 00:28:12 CST)
- Details of .psf format Paul T. Bauman (Fri Dec 08 2006 - 14:52:09 CST)
- Best fit plane axis Myunggi Yi (Fri Dec 08 2006 - 12:23:58 CST)
- Unable to compile plugins on MACOSXX86 Olaf Lenz (Fri Dec 08 2006 - 07:27:11 CST)
- Diffusion coefficient Nicolas Floquet (Fri Dec 08 2006 - 04:24:27 CST)
- diffusion coefficient Nicolas Floquet (Fri Dec 08 2006 - 04:21:48 CST)
- problem/bug? calling hbonds within a loop over the residues (tcl) Nels Thorsteinson (Thu Dec 07 2006 - 17:31:01 CST)
- drawing helices from partial aminoacids Streutker, J (Thu Dec 07 2006 - 04:40:24 CST)
- Getting coordinates Myunggi Yi (Tue Dec 05 2006 - 15:47:20 CST)
- generating psf file for a lipid: vmd looking for c-term and n-term ? Mohamed Osman (Tue Dec 05 2006 - 15:45:45 CST)
- polyethylene topology Arturas Ziemys (Tue Dec 05 2006 - 12:05:57 CST)
- [Fwd: Re: Installing VMD 1.8.5 pon ubuntu linux] Ran Friedman (Mon Dec 04 2006 - 12:58:06 CST)
- duration of video mpeg Andres Palencia (Sat Dec 02 2006 - 11:39:04 CST)
- Installing VMD 1.8.5 pon ubuntu linux Ran Friedman (Fri Dec 01 2006 - 07:04:02 CST)
- problem with near clip hkhandel_at_memphys.sdu.dk (Fri Dec 01 2006 - 09:26:29 CST)
- problems with large structures hkhandel_at_memphys.sdu.dk (Fri Dec 01 2006 - 09:24:57 CST)
- R/S asymmetric carbon FyD (Fri Dec 01 2006 - 04:02:39 CST)
- draw hydrophobic contact gcmc jie (Thu Nov 30 2006 - 13:41:10 CST)
- Poor man's stereolithography Morizono, Hiroki (Thu Nov 30 2006 - 09:07:51 CST)
- coloring residues with VMD christopher (Wed Nov 29 2006 - 14:41:37 CST)
- ZN2 vs MG? Samuel C Flores (Wed Nov 29 2006 - 12:27:50 CST)
- Help for the CAVE Christian Wohlschlager (Wed Nov 29 2006 - 08:19:11 CST)
- radius of the curvature ivana adamovic (Tue Nov 28 2006 - 14:33:01 CST)
- High res stl files Frederick Sachs (Tue Nov 28 2006 - 13:47:11 CST)
- Read dcd file error using vmd1.8.5 for windows Shaojie Ma (Mon Nov 27 2006 - 21:49:46 CST)
- CAve Question Christian Wohlschlager (Mon Nov 27 2006 - 02:39:04 CST)
- Shutter glasses on VMD Cesar Avila (Sat Nov 25 2006 - 12:14:00 CST)
- Atomselect in loops Alexandre A. Vakhrouchev (Fri Nov 24 2006 - 03:50:34 CST)
- VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 Adrian Koh (Thu Nov 23 2006 - 22:07:27 CST)
- movie making ivana adamovic (Thu Nov 23 2006 - 14:22:10 CST)
- Installing VMD Windows version on 64-bit Windows Environment Adrian Koh (Tue Nov 21 2006 - 21:30:01 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment Axel Kohlmeyer (Wed Nov 22 2006 - 09:19:03 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment Peter Freddolino (Wed Nov 22 2006 - 10:52:07 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment John Stone (Wed Nov 22 2006 - 11:50:36 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment John Stone (Thu Dec 14 2006 - 14:41:09 CST)
- vector summation Myunggi Yi (Tue Nov 21 2006 - 16:38:54 CST)
- combine.tcl annalisa_at_biotec.tu-dresden.de (Tue Nov 21 2006 - 15:06:50 CST)
- Running a script using text mode Myunggi Yi (Tue Nov 21 2006 - 09:47:43 CST)
- Re: Running a script using text mode John Stone (Tue Nov 21 2006 - 10:31:11 CST)
- Writing a trajectory - with box information Jennie Thomas (Mon Nov 20 2006 - 22:09:12 CST)
- trajectory from separate frames Narender Singh Maan (Mon Nov 20 2006 - 17:14:22 CST)
- VMD 1.8.6 test versions available, feedback requested... John Stone (Mon Nov 20 2006 - 15:26:33 CST)
- Problem rendering NewCartoon Sathyapriya R (Fri Nov 17 2006 - 12:03:52 CST)
- changing the representation of a vector L. Michel Espinoza-Fonseca (Fri Nov 17 2006 - 10:09:55 CST)
- Change properties of representations - batch mode nunolf_at_ci.uc.pt (Fri Nov 17 2006 - 09:48:18 CST)
- VMD 'guesses' no. of frames? Neelanjana Sengupta (Thu Nov 16 2006 - 21:15:38 CST)
- how to extract atom information? Myunggi Yi (Thu Nov 16 2006 - 19:07:49 CST)
- Color surfaces by electrostatic potential Mihaly Mezei (Thu Nov 16 2006 - 17:06:06 CST)
- VMD 1.8.5 plugin update 1 posted... John Stone (Wed Nov 15 2006 - 17:12:58 CST)
- Paratool problem daniel aguayo (Wed Nov 15 2006 - 13:29:58 CST)
- PSF files append!! CSM USP (Wed Nov 15 2006 - 13:06:06 CST)
- Sequences and BLAST searching Baxy (Wed Nov 15 2006 - 06:51:22 CST)
- Sequences and BLAST searching Baxy (Wed Nov 15 2006 - 06:47:08 CST)
- Elastic Properties Jennifer A Carvajal (Tue Nov 14 2006 - 14:51:13 CST)
- Beginner's problem John Young (Tue Nov 14 2006 - 11:20:01 CST)
- giant spike in rmsd curve Nels Thorsteinson (Mon Nov 13 2006 - 13:36:14 CST)
- Normal mode analysis in VMD Vani Krishna (Sun Nov 12 2006 - 22:00:20 CST)
- python alexandra.marques_at_fc.up.pt (Sun Nov 12 2006 - 11:23:39 CST)
- Plotting Number of Hbonds and % Helicity with Time Adelene Sim (Sat Nov 11 2006 - 18:11:22 CST)
- Command line troubles Pavan Ghatty (Sat Nov 11 2006 - 16:11:46 CST)
- VMD installation problem Andres Palencia (Fri Nov 10 2006 - 10:38:41 CST)
- Is there a way to validate a structure Javaria Ahmed (Thu Nov 09 2006 - 07:41:10 CST)
- VMD 1.8.5 startup Chang, Christopher (Wed Nov 08 2006 - 14:56:37 CST)
- FEP Energy very high: Mutual exclusion of atoms Nitin Bhardwaj (Tue Nov 07 2006 - 17:29:49 CST)
- Dynamic selection of residues on a trajectory amit_at_mbu.iisc.ernet.in (Tue Nov 07 2006 - 11:07:13 CST)
- Dynamic selection of residues on a trajectory amit_at_mbu.iisc.ernet.in (Tue Nov 07 2006 - 10:45:19 CST)
- gamess plungin for PC Gamess mashaojie163 (Tue Nov 07 2006 - 01:00:58 CST)
- VMD - unable to create OpenGL bertrand russell (Tue Nov 07 2006 - 03:31:29 CST)
- How to delete selected atoms from a molecule Javaria Ahmed (Mon Nov 06 2006 - 07:22:54 CST)
- Connecting a phantom with NAMD and VMD preeda (Mon Nov 06 2006 - 00:39:36 CST)
- Bigdcd - get coordinates from file Per Jr. Greisen (Sun Nov 05 2006 - 05:56:34 CST)
- How to align two peptide molecules Sunita Patel (Fri Nov 03 2006 - 10:14:20 CST)
- .pdb file from XMD 04215287d_at_polyu.edu.hk (Thu Nov 02 2006 - 08:39:44 CST)
- IED individual eigenvectors/movie nadiav_at_soton.ac.uk (Thu Nov 02 2006 - 05:04:05 CST)
- Re: problem for saving as jpg file Esther Brugger (Wed Nov 01 2006 - 10:51:27 CST)
- problem for saving as jpg file Esther Brugger (Wed Nov 01 2006 - 09:51:17 CST)
- installation problem Esther Brugger (Tue Oct 31 2006 - 17:59:07 CST)
- VMD 1.8.4 support for AMBER binary trajectory files Kenley Barrett (Tue Oct 31 2006 - 17:47:05 CST)
- Selection of residues in a trajectory amit_at_mbu.iisc.ernet.in (Tue Oct 31 2006 - 13:50:23 CST)
- VMD - ATI video card nunolf_at_ci.uc.pt (Tue Oct 31 2006 - 13:01:24 CST)
- Displaying biological unit revisited Adrian Kaats (Tue Oct 31 2006 - 12:22:19 CST)
- autopsf errors in vmd1.8.5 Brian Bennion (Mon Oct 30 2006 - 12:09:54 CST)
- Reading box info. from PQR file Bob Johnson (Mon Oct 30 2006 - 10:02:43 CST)
- coloring HIE, HIP, HID: sorry ... I got it Vlad Cojocaru (Mon Oct 30 2006 - 07:12:12 CST)
- changing default colors for resname HIE HID HIP Vlad Cojocaru (Mon Oct 30 2006 - 06:45:42 CST)
- VMD - ATI video card nunolf_at_ci.uc.pt (Fri Oct 27 2006 - 12:32:36 CDT)
- xterm problem?? Patrycja (Fri Oct 27 2006 - 09:31:11 CDT)
- VMD trajectory/structure/coordinate format Olaf Lenz (Thu Oct 26 2006 - 07:28:52 CDT)
- VMD not working with a Matrox Graphic Card nunolf_at_ci.uc.pt (Thu Oct 26 2006 - 11:09:03 CDT)
- Re: how to select the problematic residues(atoms) Jacob Poehlsgaard (Thu Oct 26 2006 - 07:00:55 CDT)
- how to select the problematic residues(atoms) Rachel (Thu Oct 26 2006 - 05:53:14 CDT)
- Re: How to get the coordinates of periodic image! John Stone (Wed Oct 25 2006 - 13:55:20 CDT)
- problem about "mol load psf md.pdf pdb md.pdb" Qiao Baofu (Wed Oct 25 2006 - 04:31:31 CDT)
- external force Al-Rawi, Ahlam (Tue Oct 24 2006 - 11:41:54 CDT)
- EIGENVECTOR ANALYSIS Tim Meyer (Tue Oct 24 2006 - 08:25:47 CDT)
- Error installing VMD 1.8.5. Lechuga, Javier (Mon Oct 23 2006 - 02:29:06 CDT)
- .psf for porphyrin javier.vallejos_at_correo.usach.cl (Sat Oct 21 2006 - 18:11:19 CDT)
- Starting VMD at Command Line in OSX Jeffrey A Tibbitt (Sat Oct 21 2006 - 13:07:20 CDT)
- adding selections Myunggi Yi (Fri Oct 20 2006 - 13:04:21 CDT)
- Nvidia graphics card with VMD Berit Hinnemann (Fri Oct 20 2006 - 07:13:42 CDT)
- CPK Graphical Representation Jawahar Neelankatan (Fri Oct 20 2006 - 05:57:20 CDT)
- How to use vector calculation ??? Myunggi Yi (Thu Oct 19 2006 - 22:30:48 CDT)
- retrieving the center of mass for each frame of trajectory Vlad Cojocaru (Wed Oct 18 2006 - 12:35:14 CDT)
- update of atom selection at each step for trajectories Tim Meyer (Wed Oct 18 2006 - 11:21:36 CDT)
- measure fit sufficient for alignment prior to RMSD? Paul R Brenner (Wed Oct 18 2006 - 10:08:49 CDT)
- electrostatic map render problem Matthieu.Chavent_at_edam.uhp-nancy.fr (Wed Oct 18 2006 - 09:36:14 CDT)
- Using VMDPLUGIN_register_tcl Miller, Patrick (Wed Oct 18 2006 - 09:24:21 CDT)
- differentiating solvent molecules...... bertrand russell (Tue Oct 17 2006 - 12:44:28 CDT)
- RPM spec file Andrew Gormanly (Tue Oct 17 2006 - 08:03:45 CDT)
- Free Linux Cluster-Building Workshop - 30 Nov 2006 - 01 Dec 2006 Tim Skirvin (Mon Oct 16 2006 - 12:34:13 CDT)
- VMD 1.8.5 on Mac OSX Panther Neelanjana Sengupta (Mon Oct 16 2006 - 08:32:06 CDT)
- Volumetric data: Periodic expansion does not work; why? Rob (Thu Oct 12 2006 - 23:24:26 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? Axel Kohlmeyer (Fri Oct 13 2006 - 11:15:36 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? John Stone (Fri Oct 13 2006 - 13:55:15 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? Rob (Tue Oct 17 2006 - 02:17:26 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? Rob (Tue Oct 17 2006 - 21:02:42 CDT)
- Test build of CHARMM PBEQ electrostatics map reader plugin John Stone (Thu Oct 12 2006 - 16:10:49 CDT)
- IED Ran Friedman (Thu Oct 12 2006 - 08:23:42 CDT)
- Python on Intel Mac? Michael Lerner (Thu Oct 12 2006 - 13:25:01 CDT)
- movie Pijush Ghosh (Wed Oct 11 2006 - 17:36:40 CDT)
- gofr Arturas Ziemys (Wed Oct 11 2006 - 13:22:54 CDT)
- HBonds Representation Dallas B. Warren (Tue Oct 10 2006 - 23:04:35 CDT)
- Missing main menu Stefan Gerlach (Mon Oct 09 2006 - 13:12:52 CDT)
- Exporting a protein surface into a mesh (plain text file) Emmanuel Levy (Mon Oct 09 2006 - 11:59:57 CDT)
- Access to bond information inside a VMD plugin... Miller, Patrick (Mon Oct 09 2006 - 11:19:54 CDT)
- Re: Re: pbc: relation of orthonormalizing; cart. coords; rotation matrices. Neelanjana Sengupta (Mon Oct 09 2006 - 09:48:49 CDT)
- Question about measure gofr Jennie Thomas (Fri Oct 06 2006 - 12:02:43 CDT)
- cutting short a DMPC bilayer in VMD Akshay Patny (Thu Oct 05 2006 - 21:23:43 CDT)
- trace to newcartoon inconsistent display problem Ravinder Abrol (Thu Oct 05 2006 - 15:20:28 CDT)
- pbc: relation of orthonormalizing; cart. coords; rotation matrices. Neelanjana Sengupta (Thu Oct 05 2006 - 11:55:17 CDT)
- adding new atoms to a molecule from a script Enzo Vitale (Thu Oct 05 2006 - 05:20:55 CDT)
- VMD PDB to LEAP Readable PDB Akshay Patny (Wed Oct 04 2006 - 20:09:14 CDT)
- no main window with ATI openGL Loison Claire (Wed Oct 04 2006 - 05:15:04 CDT)
- problem viewing cube files Dr. Seth Olsen (Tue Oct 03 2006 - 21:10:33 CDT)
- Changing Text Style Dr. Seth Olsen (Tue Oct 03 2006 - 21:52:35 CDT)
- Selecting Atomnumber Jeffrey A Tibbitt (Tue Oct 03 2006 - 21:15:19 CDT)
- Hbond donor-acceptor distances Vlad Cojocaru (Tue Oct 03 2006 - 14:49:40 CDT)
- save coordinates after moving them. Cesar Millan (Tue Oct 03 2006 - 14:02:41 CDT)
- PME units Francesco Iori (Tue Oct 03 2006 - 11:36:54 CDT)
- problem running pgn script file Shenoy, Sukesh (Tue Oct 03 2006 - 10:37:04 CDT)
- Does volume coloring require GLSL rendering? Robin L Hayes (Mon Oct 02 2006 - 19:26:24 CDT)
- Possible bug in LAMMPS plugin Lutz Maibaum (Mon Oct 02 2006 - 15:10:43 CDT)
- Re: Possible bug in LAMMPS plugin Lutz Maibaum (Tue Oct 03 2006 - 11:49:23 CDT)
- Re: Possible bug in LAMMPS plugin John Stone (Wed Oct 04 2006 - 00:24:11 CDT)
- Re: Possible bug in LAMMPS plugin Marco Kalweit (Thu Oct 05 2006 - 10:06:25 CDT)
- Re: Possible bug in LAMMPS plugin Lutz Maibaum (Thu Oct 05 2006 - 12:44:30 CDT)
- Re: Possible bug in LAMMPS plugin Marco Kalweit (Thu Oct 05 2006 - 16:48:28 CDT)
- Re: Possible bug in LAMMPS plugin Lutz Maibaum (Thu Oct 05 2006 - 19:11:56 CDT)
- Re: Possible bug in LAMMPS plugin John Stone (Fri Oct 13 2006 - 16:53:56 CDT)
- Re: Possible bug in LAMMPS plugin John Stone (Wed Oct 04 2006 - 00:24:11 CDT)
- Re: Possible bug in LAMMPS plugin Lutz Maibaum (Tue Oct 03 2006 - 11:49:23 CDT)
- Connectivity lost when loading second pdb MW Van der Kamp, School of Chemistry (Mon Oct 02 2006 - 11:06:33 CDT)
- top2psf script olga hrydziuszko (Mon Oct 02 2006 - 09:08:29 CDT)
- Error on DNA Mario Valle (Mon Oct 02 2006 - 02:59:08 CDT)
- STRIDE for a trajectory in text mode tnels_at_sfu.ca (Fri Sep 29 2006 - 15:29:02 CDT)
- How to build a pseudo pore? Cesar Millan (Sat Sep 30 2006 - 11:36:15 CDT)
- Color by volume Jay Shore (Fri Sep 29 2006 - 11:54:42 CDT)
- problem loading dcd file Shenoy, Sukesh (Fri Sep 29 2006 - 11:43:03 CDT)
- lammps trajectory Tamara Rogers (Fri Sep 29 2006 - 04:04:33 CDT)
- Adding bonds in a script Ignacio Fern醤dez Galv醤 (Thu Sep 28 2006 - 04:08:08 CDT)
- problem using saltbr plugin in text mode tnels_at_sfu.ca (Wed Sep 27 2006 - 13:33:43 CDT)
- VMD Prompt Jeffrey A Tibbitt (Wed Sep 27 2006 - 12:23:40 CDT)
- VMD Installation Help bertrand russell (Tue Sep 26 2006 - 12:05:26 CDT)
- HBonds criterion Fran鏾is-Xavier Coudert (Tue Sep 26 2006 - 11:18:22 CDT)
- GRASP plugin for VMD Vineet Pande (Tue Sep 26 2006 - 11:14:31 CDT)
- measure angle between three points in space Ivan Degtyarenko (Sun Sep 24 2006 - 04:17:52 CDT)
- visualizing charges Gustavo Seabra (Fri Sep 22 2006 - 13:37:34 CDT)
- 1.8.5: VASP plugin not correct Rob (Thu Sep 21 2006 - 22:15:06 CDT)
- Re: 1.8.5: VASP plugin not correct John Stone (Fri Sep 22 2006 - 12:36:44 CDT)
- Re: 1.8.5: VASP plugin not correct Rob (Mon Sep 25 2006 - 05:45:15 CDT)
- Re: 1.8.5: VASP plugin not correct John Stone (Mon Sep 25 2006 - 06:23:48 CDT)
- Re: 1.8.5: VASP plugin not correct Rob (Mon Sep 25 2006 - 07:33:43 CDT)
- Re: 1.8.5: VASP plugin not correct John Stone (Mon Sep 25 2006 - 07:48:33 CDT)
- Re: 1.8.5: VASP plugin not correct Axel Kohlmeyer (Mon Sep 25 2006 - 08:45:26 CDT)
- Re: 1.8.5: VASP plugin not correct John Stone (Mon Sep 25 2006 - 09:18:08 CDT)
- Re: 1.8.5: VASP plugin not correct Rob (Mon Sep 25 2006 - 11:17:10 CDT)
- Re: 1.8.5: VASP plugin not correct Axel Kohlmeyer (Mon Sep 25 2006 - 11:44:23 CDT)
- Re: 1.8.5: VASP plugin not correct Rob (Mon Sep 25 2006 - 17:55:02 CDT)
- Re: 1.8.5: VASP plugin not correct Axel Kohlmeyer (Tue Sep 26 2006 - 09:33:45 CDT)
- Re: 1.8.5: VASP plugin not correct Rob (Mon Sep 25 2006 - 17:57:22 CDT)
- Re: 1.8.5: VASP plugin not correct John Stone (Mon Sep 25 2006 - 21:23:42 CDT)
- Re: 1.8.5: VASP plugin not correct Rob (Mon Sep 25 2006 - 05:45:15 CDT)
- Re: 1.8.5: VASP plugin not correct John Stone (Fri Sep 22 2006 - 12:36:44 CDT)
- How to hide graphics molecules in a python script? Dr. Seth Olsen (Thu Sep 21 2006 - 20:44:28 CDT)
- What unit system does VMD use? Dr. Seth Olsen (Thu Sep 21 2006 - 19:21:09 CDT)
- Re: What unit system does VMD use? Axel Kohlmeyer (Thu Sep 21 2006 - 19:41:58 CDT)
- Re: What unit system does VMD use? Dr. Seth Olsen (Thu Sep 21 2006 - 21:25:09 CDT)
- Re: What unit system does VMD use? Dr. Seth Olsen (Thu Sep 21 2006 - 21:30:53 CDT)
- Re: What unit system does VMD use? Peter Freddolino (Thu Sep 21 2006 - 21:37:27 CDT)
- Re: What unit system does VMD use? Dr. Seth Olsen (Thu Sep 21 2006 - 21:38:01 CDT)
- Re: What unit system does VMD use? Dr. Seth Olsen (Thu Sep 21 2006 - 21:50:58 CDT)
- Re: What unit system does VMD use? Axel Kohlmeyer (Sat Sep 23 2006 - 21:03:01 CDT)
- Re: What unit system does VMD use? John Stone (Sat Sep 23 2006 - 21:27:44 CDT)
- Re: What unit system does VMD use? Axel Kohlmeyer (Fri Sep 22 2006 - 18:29:23 CDT)
- Re: What unit system does VMD use? Axel Kohlmeyer (Mon Sep 25 2006 - 12:00:07 CDT)
- Re: What unit system does VMD use? Dr. Seth Olsen (Thu Sep 21 2006 - 21:25:09 CDT)
- Re: What unit system does VMD use? Axel Kohlmeyer (Thu Sep 21 2006 - 19:41:58 CDT)
- Paratool Problem Darrell Kuykendall (Thu Sep 21 2006 - 13:50:01 CDT)
- Solvate Plug-In -b Boundary variable Akshay Patny (Thu Sep 21 2006 - 10:18:10 CDT)
- Precompiled 1.8.5 for Linux-IA64 installs with wrong flags in lib directory? Rob (Wed Sep 20 2006 - 23:53:31 CDT)
- which POPC Bilayer is better to start? Akshay Patny (Wed Sep 20 2006 - 16:40:07 CDT)
- VMD won't make mpg out of my trajectory Kenley Barrett (Wed Sep 20 2006 - 13:38:19 CDT)
- problem with tcl script in text mode tnels_at_sfu.ca (Wed Sep 20 2006 - 12:47:01 CDT)
- GPCR-Membrane Issue Akshay Patny (Wed Sep 20 2006 - 12:29:49 CDT)
- problem with tcl script in text mode tnels_at_sfu.ca (Wed Sep 20 2006 - 12:14:08 CDT)
- ribbons representation for RNA in vmd 1.8.5 Vlad Cojocaru (Wed Sep 20 2006 - 09:06:43 CDT)
- Computer for 3D visualization Berit Hinnemann (Wed Sep 20 2006 - 04:45:58 CDT)
- importing VMD python modules from external interpreterr Dr. Seth Olsen (Tue Sep 19 2006 - 22:19:02 CDT)
- measure bond length? Ivan Degtyarenko (Tue Sep 19 2006 - 11:32:05 CDT)
- rmsf andrea spitaleri (Tue Sep 19 2006 - 10:40:15 CDT)
- psf for protein Al-Rawi, Ahlam (Mon Sep 18 2006 - 17:24:27 CDT)
- Centering GPCR onto Lipid Bilayer Akshay Patny (Mon Sep 18 2006 - 14:28:35 CDT)
- modelling phosphorylation Dani S黺eges (Mon Sep 18 2006 - 04:45:55 CDT)
- FW: Membrane PlugIn issue Akshay Patny (Sat Sep 16 2006 - 14:20:23 CDT)
- problem with -args in text mode tnels_at_sfu.ca (Fri Sep 15 2006 - 19:38:07 CDT)
- no subject tnels_at_sfu.ca (Fri Sep 15 2006 - 20:18:21 CDT)
- how to build an atomistic protein from a low resolution data. Margaret Shun Cheung (Fri Sep 15 2006 - 11:38:56 CDT)
- manually defining bonds, setting atom colors Robert Hoy (Thu Sep 14 2006 - 16:10:52 CDT)
- DPPC Bilayer Size Akshay Patny (Thu Sep 14 2006 - 13:49:06 CDT)
- Finding residues involved in Hbonds. Nitin Bhardwaj (Thu Sep 14 2006 - 11:16:21 CDT)
- problem in visualizing gaussian log file Francesca Mocci (Thu Sep 14 2006 - 05:41:51 CDT)
- puts format lily jin (Wed Sep 13 2006 - 15:22:27 CDT)
- rdf plugin in vmd 1.85 dimka (Wed Sep 13 2006 - 14:08:29 CDT)
- antialiasing Wen Li (Wed Sep 13 2006 - 13:36:53 CDT)
- drawing of direction vectors for conformational transition Zu Thur Yew (Wed Sep 13 2006 - 11:52:45 CDT)
- NuVision glasses Grischa Meyer (Mon Sep 11 2006 - 19:41:25 CDT)
- rmsd fitting Myunggi Yi (Mon Sep 11 2006 - 20:30:13 CDT)
- how to run a plugin from the command line? Johannes M黮legger (Mon Sep 11 2006 - 18:25:03 CDT)
- Recentering the box on target molecule and wraping Arturas Ziemys (Mon Sep 11 2006 - 10:39:55 CDT)
- RE: How to produce a graph as the one attached, using VMD? Jiapu.Zhang_at_csiro.au (Sun Sep 10 2006 - 23:49:37 CDT)
- Graphics cards David Chalmers (Sun Sep 10 2006 - 23:11:58 CDT)
- How to produce a graph as the one attached, using VMD? Jiapu.Zhang_at_csiro.au (Sun Sep 10 2006 - 21:32:20 CDT)
- Opening DCD file >2GB Lechuga, Javier (Sun Sep 10 2006 - 13:35:52 CDT)
- saving charges in the B column L. Michel Espinoza-Fonseca (Fri Sep 08 2006 - 18:53:11 CDT)
- protein embedding membrane javier.vallejos_at_correo.usach.cl (Fri Sep 08 2006 - 18:06:50 CDT)
- protein in membrane javier.vallejos_at_correo.usach.cl (Fri Sep 08 2006 - 17:35:27 CDT)
- Ramachandran Map of 2 pdbs Rathinavelan, Thenmalarchelvi (Fri Sep 08 2006 - 12:43:32 CDT)
- dipole moment L. Michel Espinoza-Fonseca (Fri Sep 08 2006 - 11:46:59 CDT)
- How to use bigdcd in vmd batch mode? Hamsa Priya Mohana sundaram (Fri Sep 08 2006 - 09:44:45 CDT)
- Labels not appearing with "load state" Ignacio Fern醤dez Galv醤 (Fri Sep 08 2006 - 07:59:07 CDT)
- IED, output from nmode (amber) nadiav_at_soton.ac.uk (Fri Sep 08 2006 - 07:55:42 CDT)
- Min. Image Convention after Translation & Rotation Neelanjana Sengupta (Thu Sep 07 2006 - 17:53:22 CDT)
- Re: Min. Image Convention after Translation & Rotation Axel Kohlmeyer (Thu Sep 07 2006 - 20:08:45 CDT)
- pass variables from the shell to VMD Christian Fufezan (Thu Sep 07 2006 - 10:54:05 CDT)
- Win64 version Dan Strahs (Wed Sep 06 2006 - 14:51:10 CDT)
- slicing pinisetty dinesh (Wed Sep 06 2006 - 11:29:48 CDT)
- dynamical list of atoms Silvina Matysiak (Wed Sep 06 2006 - 10:02:25 CDT)
- Matrix inverse Neelanjana Sengupta (Tue Sep 05 2006 - 17:38:23 CDT)
- Warning: poorly guessed coordinates using PsfGen Lechuga, Javier (Tue Sep 05 2006 - 10:23:35 CDT)
- Re: Warning: poorly guessed coordinates using PsfGen Axel Kohlmeyer (Tue Sep 05 2006 - 10:53:35 CDT)
- imposing period boundary conditions in a simulation with a crystal Ana Celia Araujo Vila Verde (Tue Sep 05 2006 - 11:13:06 CDT)
- radial pair distribution function: molecule/water? Ivan Degtyarenko (Mon Sep 04 2006 - 11:31:35 CDT)
- different number of atoms in different frames of a trajectory Enzo Vitale (Mon Sep 04 2006 - 11:09:33 CDT)
- qsub (torque/maui) and vmd Gordon Wells (Mon Sep 04 2006 - 08:25:54 CDT)
- CoordinateTransformation Neelanjana Sengupta (Sun Sep 03 2006 - 15:34:48 CDT)
- CoordinateTransformation Neelanjana Sengupta (Sun Sep 03 2006 - 15:29:56 CDT)
- Re: namd-l: electric field Peter Freddolino (Sun Sep 03 2006 - 08:10:10 CDT)
- electric field Ekta Khurana (Sat Sep 02 2006 - 20:21:23 CDT)
- Angles and dihedral generation Cesar Luis Avila (Fri Sep 01 2006 - 20:02:36 CDT)
- looking for VMD draw scripts. Axel Kohlmeyer (Fri Sep 01 2006 - 15:34:59 CDT)
- Re: looking for VMD draw scripts. Jan Saam (Fri Sep 01 2006 - 15:59:13 CDT)
- Re: looking for VMD draw scripts. John Stone (Fri Sep 01 2006 - 16:07:38 CDT)
- Re: looking for VMD draw scripts. Jan Saam (Fri Sep 01 2006 - 16:43:06 CDT)
- Re: looking for VMD draw scripts. Axel Kohlmeyer (Fri Sep 01 2006 - 16:52:51 CDT)
- Re: looking for VMD draw scripts. John Stone (Fri Sep 01 2006 - 17:03:37 CDT)
- Re: looking for VMD draw scripts. Jan Saam (Fri Sep 01 2006 - 17:11:55 CDT)
- Re: looking for VMD draw scripts. Jan Saam (Mon Sep 04 2006 - 13:20:08 CDT)
- Re: looking for VMD draw scripts. John Stone (Fri Sep 01 2006 - 16:07:38 CDT)
- Re: looking for VMD draw scripts. Jan Saam (Fri Sep 01 2006 - 15:59:13 CDT)
- Where did I put those angles? Cesar Luis Avila (Thu Aug 31 2006 - 17:16:01 CDT)
- NAMD 2.6 released Jim Phillips (Thu Aug 31 2006 - 17:13:40 CDT)
- problem with vecsub, help with Tcl Script Leonardo Sepulveda Dur醤 (Thu Aug 31 2006 - 12:25:29 CDT)
- output file format alexandra.marques_at_fc.up.pt (Thu Aug 31 2006 - 10:20:14 CDT)
- Paratool problem daniel aguayo (Wed Aug 30 2006 - 18:35:36 CDT)
- Installing VMFD in kubuntu.............. bertrand russell (Wed Aug 30 2006 - 10:59:37 CDT)
- VMD runtime error Lechuga, Javier (Wed Aug 30 2006 - 06:11:47 CDT)
- R閒. : Re: VMD1.8.5 : multiseq db l.spitzer_at_fr.fournierpharma.com (Wed Aug 30 2006 - 03:06:55 CDT)
- Counting H-bonds from a dcd file Nitin Bhardwaj (Tue Aug 29 2006 - 17:06:21 CDT)
- question about visualization Sandra Bennun Serrano (Tue Aug 29 2006 - 12:44:58 CDT)
- R閒. : Re: R閒. : Re: vmd-l : VMD1.8.5 : multiseq db l.spitzer_at_fr.fournierpharma.com (Tue Aug 29 2006 - 11:18:08 CDT)
- R閒. : Re: vmd-l : VMD1.8.5 : multiseq db l.spitzer_at_fr.fournierpharma.com (Tue Aug 29 2006 - 09:48:11 CDT)
- loading gzipped trajectories into vmd Vlad Cojocaru (Tue Aug 29 2006 - 08:24:03 CDT)
- vmd-l : VMD1.8.5 : multiseq db l.spitzer_at_fr.fournierpharma.com (Tue Aug 29 2006 - 03:29:44 CDT)
- Dynamic bond calculation Ignacio Fern醤dez Galv醤 (Tue Aug 29 2006 - 02:49:30 CDT)
- A error of " transforming dcd into pdb " wang (Tue Aug 29 2006 - 01:27:52 CDT)
- Re: A error of " transforming dcd into pdb " Leonardo Trabuco (Tue Aug 29 2006 - 02:02:52 CDT)
- Re: A error of " transforming dcd into pdb " dimka (Tue Aug 29 2006 - 02:37:14 CDT)
- Re: A error of " transforming dcd into pdb " Eduard Schreiner (Tue Aug 29 2006 - 04:46:24 CDT)
- psfgen woes... Pavan Ghatty (Mon Aug 28 2006 - 16:00:42 CDT)
- Help with psfgen Pavan Ghatty (Mon Aug 28 2006 - 08:09:46 CDT)
- Problem with vmdsphere.frag shader Mario Valle (Mon Aug 28 2006 - 09:00:52 CDT)
- GLSL failure in VMD 1.8.5, Nvidia 6200 card Guo Zhi (Mon Aug 28 2006 - 08:57:39 CDT)
- water numbering alexandra.marques_at_fc.up.pt (Mon Aug 28 2006 - 06:50:33 CDT)
- autoionize behaviour on big systems L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 00:44:24 CDT)
- Announce: VMD 1.8.5 Released! John Stone (Fri Aug 25 2006 - 23:51:22 CDT)
- removing structures from a psf&pdb Thomas Caulfield (Fri Aug 25 2006 - 15:58:40 CDT)
- Heme psfgen issue sseefeld_at_uwm.edu (Fri Aug 25 2006 - 00:33:10 CDT)
- Text Editor Got Me. . . Marc Charendoff (Thu Aug 24 2006 - 19:48:11 CDT)
- animated gif option in VMD for Windows. Ravinder Abrol (Thu Aug 24 2006 - 14:14:58 CDT)
- Unexpected End-of-file? Marc Charendoff (Wed Aug 23 2006 - 20:23:52 CDT)
- spikes in trajectory, problem with the alignment of frames Johannes M黮legger (Wed Aug 23 2006 - 19:25:58 CDT)
- Problem with cellBasisVector 1, 2 and 3 Pavan Ghatty (Wed Aug 23 2006 - 08:55:04 CDT)
- PRODRG generated .gro file Marc Charendoff (Tue Aug 22 2006 - 21:03:41 CDT)
- VMD and IED for Tiger? ybomble (Tue Aug 22 2006 - 19:54:17 CDT)
- problems with autoionize L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 17:36:39 CDT)
- Re: problems with autoionize John Stone (Tue Aug 22 2006 - 17:45:34 CDT)
- Re: problems with autoionize Axel Kohlmeyer (Tue Aug 22 2006 - 18:10:54 CDT)
- Re: problems with autoionize John Stone (Tue Aug 22 2006 - 20:56:03 CDT)
- Re: problems with autoionize L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 21:18:06 CDT)
- Re: problems with autoionize John Stone (Tue Aug 22 2006 - 21:48:24 CDT)
- Re: problems with autoionize Peter Freddolino (Tue Aug 22 2006 - 22:54:31 CDT)
- Re: problems with autoionize L. Michel Espinoza-Fonseca (Thu Aug 24 2006 - 13:17:30 CDT)
- Re: problems with autoionize John Stone (Thu Aug 24 2006 - 21:52:35 CDT)
- Re: problems with autoionize L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 21:18:06 CDT)
- charmm toppology : internal coordinates Arturas Ziemys (Tue Aug 22 2006 - 16:39:00 CDT)
- psfgen probs Shenoy, Sukesh (Tue Aug 22 2006 - 10:03:41 CDT)
- (no subject) Lechuga, Javier (Tue Aug 22 2006 - 06:12:20 CDT)
- corrigendum: error when solvating a system L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:51:54 CDT)
- error when solvating a system L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:49:27 CDT)
- psfgen problems? Shenoy, Sukesh (Mon Aug 21 2006 - 17:41:52 CDT)
- [Fwd: Re: Help with "move" command] Peter Freddolino (Mon Aug 21 2006 - 14:40:50 CDT)
- Help with "move" command Pavan Ghatty (Mon Aug 21 2006 - 11:52:50 CDT)
- changing the name of a residue L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 10:23:21 CDT)
- md trajectory: centering/h-bonb residence/coordination number Ivan Degtyarenko (Mon Aug 21 2006 - 08:26:44 CDT)
- NAMD 2.6b2 released Jim Phillips (Sun Aug 20 2006 - 15:43:38 CDT)
- large mdcrd files alexandra.marques_at_fc.up.pt (Sun Aug 20 2006 - 07:56:30 CDT)
- segment name limit with solvate and psfgen Thomas Caulfield (Sat Aug 19 2006 - 22:35:55 CDT)
- RealD (Stereographics) E2SGI emitter on Quadro 3450? Sabuj Pattanayek (Fri Aug 18 2006 - 20:25:24 CDT)
- load MSMS face file into VMD Yongcheng Zhou (Fri Aug 18 2006 - 15:54:13 CDT)
- small query... hl332_at_drexel.edu (Fri Aug 18 2006 - 11:17:25 CDT)
- Fwd: Crystal eyes stereo on un supported Mac G5 GeForce FX5200 Dan White (Fri Aug 18 2006 - 09:15:23 CDT)
- reading cmap wih vmd L. Michel Espinoza-Fonseca (Thu Aug 17 2006 - 19:17:26 CDT)
- Load angel (Thu Aug 17 2006 - 13:14:06 CDT)
- Question About Tcl variables Leonardo Sepulveda Dur醤 (Wed Aug 16 2006 - 16:41:46 CDT)
- rendering transparent objects Ivan Degtyarenko (Wed Aug 16 2006 - 15:34:35 CDT)
- RE: stereo on LCD display = pipe dream? Warren DeLano (Wed Aug 16 2006 - 15:11:39 CDT)
- stereo on LCD display = pipe dream? Jeff Hoch (Wed Aug 16 2006 - 13:46:04 CDT)
- about parameter "wrapAll" 邹雪晴 (Wed Aug 16 2006 - 02:57:26 CDT)
- minimum distance b/w two atoms Narender Singh Maan (Tue Aug 15 2006 - 18:05:30 CDT)
- Manipulation on loaded MSMS surface Arturas Ziemys (Tue Aug 15 2006 - 16:19:18 CDT)
- unique opportunity - 20% discount for the EuroQSAR 2006 andras.borosy_at_givaudan.com (Tue Aug 15 2006 - 10:54:04 CDT)
- VMD 1.8.5 beta 7 test version posted John Stone (Sun Aug 13 2006 - 17:49:32 CDT)
- Re: NAMD minimization error JC Gumbart (Sat Aug 12 2006 - 17:29:49 CDT)
- color: negative values Zu Thur Yew (Sat Aug 12 2006 - 14:30:37 CDT)
- NAMD minimization error sseefeld_at_uwm.edu (Sat Aug 12 2006 - 11:50:42 CDT)
- Installation of VMD on Mandriva Linux 2006 Wei Liu (Sat Aug 12 2006 - 13:23:58 CDT)
- right alignment for numbers in color bar Yongcheng Zhou (Fri Aug 11 2006 - 18:38:38 CDT)
- Axes dilema griadi_at_utalca.cl (Fri Aug 11 2006 - 18:11:07 CDT)
- favorite VMD material settings? John Stone (Fri Aug 11 2006 - 14:47:18 CDT)
- Alignment Python Per Jr. Greisen (Fri Aug 11 2006 - 05:19:15 CDT)
- test versions of VMD 1.8.5 -DLPOLY Javier Sacristan (Thu Aug 10 2006 - 11:44:43 CDT)
- Compiling VMD with full OpenGL Marc Baaden (Thu Aug 10 2006 - 07:21:10 CDT)
- visualization code Hai-Jun Su (Wed Aug 09 2006 - 22:31:00 CDT)
- making movie from GROMACS trajectory Arindam Ganguly (Wed Aug 09 2006 - 18:05:36 CDT)
- SASA calculation for a trajectory Gaurav Sharma (Tue Aug 08 2006 - 20:50:32 CDT)
- (no subject) Hai-Jun Su (Tue Aug 08 2006 - 10:30:27 CDT)
- Which VMD executible to use? Jeffrey A Tibbitt (Tue Aug 08 2006 - 10:06:44 CDT)
- water model used for the waterbox in VMD Vlad Cojocaru (Tue Aug 08 2006 - 08:32:07 CDT)
- RE: No stereo display support in Windows Vista... Warren DeLano (Mon Aug 07 2006 - 22:06:10 CDT)
- No stereo display support in Windows Vista... John Stone (Mon Aug 07 2006 - 12:52:00 CDT)
- To display only certain regions of the .dx map in VMD Shirley Li (Mon Aug 07 2006 - 12:01:05 CDT)
- loading trajectory file Arturas Ziemys (Mon Aug 07 2006 - 11:38:34 CDT)
- Atom selection based on arbitrary columns in the pdb file Shatadal Ghosh (Sat Aug 05 2006 - 11:04:57 CDT)
- VASP plugins Jennifer Lardge (Thu Aug 03 2006 - 07:21:42 CDT)
- Cannot run IED! :( Peng Tao (Wed Aug 02 2006 - 21:13:04 CDT)
- Re: Cannot run IED! :( John Stone (Wed Aug 02 2006 - 21:53:55 CDT)
- Re: Cannot run IED! :( Peng Tao (Thu Aug 03 2006 - 09:04:00 CDT)
- Re: Cannot run IED! :( Peng Tao (Thu Aug 03 2006 - 09:47:21 CDT)
- Re: Cannot run IED! :( Axel Kohlmeyer (Thu Aug 03 2006 - 10:37:14 CDT)
- Re: Cannot run IED! :( John Stone (Thu Aug 03 2006 - 10:40:15 CDT)
- Re: Cannot run IED! :( Peng Tao (Thu Aug 03 2006 - 11:23:03 CDT)
- Re: Cannot run IED! :( John Stone (Thu Aug 03 2006 - 11:30:01 CDT)
- select only border of the water box andrea spitaleri (Fri Aug 04 2006 - 04:41:00 CDT)
- Re: select only border of the water box Axel Kohlmeyer (Fri Aug 04 2006 - 07:01:53 CDT)
- Re: Cannot run IED! :( Peng Tao (Thu Aug 03 2006 - 10:00:30 CDT)
- Re: Cannot run IED! :( John Stone (Wed Aug 02 2006 - 21:53:55 CDT)
- 2006 VMD user survey in progress John Stone (Wed Aug 02 2006 - 18:05:13 CDT)
- about maximum number of atoms L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 15:25:41 CDT)
- rendering..... Viswanadham Sridhara (Mon Jul 31 2006 - 14:39:51 CDT)
- Altering Definition of Molecular Coloring Method Adrian Koh (Mon Jul 31 2006 - 05:08:56 CDT)
- Latest list of VMD citations John Stone (Wed Jul 26 2006 - 15:58:09 CDT)
- where is option "Image Smoothing"? Hu Zhongqiao (Wed Jul 26 2006 - 00:30:07 CDT)
- DL_POLY output files Viswanadham Sridhara (Tue Jul 25 2006 - 15:31:08 CDT)
- trajectory file format Jonathan Ashar (Tue Jul 25 2006 - 12:31:00 CDT)
- Unable to ionize a solvated structure using autoionization Jose Dinto (Mon Jul 24 2006 - 09:56:41 CDT)
- Rendering surfaces from PLT files Sergio Urahata (Sat Jul 22 2006 - 16:50:02 CDT)
- Re: Rendering surfaces from PLT files Axel Kohlmeyer (Sun Jul 23 2006 - 00:30:08 CDT)
- Re: Rendering surfaces from PLT files Sergio Urahata (Mon Jul 24 2006 - 11:28:07 CDT)
- Re: Rendering surfaces from PLT files Axel Kohlmeyer (Mon Jul 24 2006 - 11:43:42 CDT)
- Re: Rendering surfaces from PLT files John Stone (Mon Jul 24 2006 - 11:56:51 CDT)
- Re: Rendering surfaces from PLT files Sergio Urahata (Mon Jul 24 2006 - 12:21:32 CDT)
- Re: Rendering surfaces from PLT files John Stone (Tue Jul 25 2006 - 12:41:53 CDT)
- Re: Rendering surfaces from PLT files Sergio Urahata (Mon Jul 24 2006 - 11:28:07 CDT)
- Re: Rendering surfaces from PLT files Axel Kohlmeyer (Sun Jul 23 2006 - 00:30:08 CDT)
- some parameters for TIP3P Margaret Shun Cheung (Fri Jul 21 2006 - 14:48:33 CDT)
- vmd-l digest V1 #579 vmd-l digest (Mon Jul 17 2006 - 15:51:45 CDT)
- AMBER9 netcdf trajectory loading Fabian Boes (Fri Jul 21 2006 - 08:00:30 CDT)
- temp autocorrelation Swarna Patra (Fri Jul 21 2006 - 00:56:37 CDT)
- psf for already hydrogen-added structure hori koshii (Thu Jul 20 2006 - 15:09:14 CDT)
- NAMD unit cell data Peter Jones (Thu Jul 20 2006 - 00:43:24 CDT)
- Mesa rendering Olaf Lenz (Thu Jul 20 2006 - 07:56:26 CDT)
- RE: Atomselection for negative values Chang, Christopher (Wed Jul 19 2006 - 17:46:15 CDT)
- Atomselection for negative values Chang, Christopher (Wed Jul 19 2006 - 16:18:39 CDT)
- "Unable to create OpenGL window" C閟ar Dp (Tue Jul 18 2006 - 15:20:55 CDT)
- Reading Amber .crd files campen_at_geosc.psu.edu (Tue Jul 18 2006 - 12:25:17 CDT)
- Reading Amber .prd and PARM files into VMD campen_at_geosc.psu.edu (Tue Jul 18 2006 - 08:32:37 CDT)
- revised VMD tutorial Christoph Weber (Fri Jul 14 2006 - 19:03:44 CDT)
- Selecting the "n" closest waters Gustavo Seabra (Thu Jul 13 2006 - 12:39:31 CDT)
- Anyone using ATI X1600? Yu Zhou (Thu Jul 13 2006 - 07:39:59 CDT)
- water selection Vlad Cojocaru (Thu Jul 13 2006 - 04:09:17 CDT)
- residue no. greater than 9999 in pdb files created with VMD Vlad Cojocaru (Wed Jul 12 2006 - 10:56:16 CDT)
- third time..can someone help!! hl332_at_drexel.edu (Tue Jul 11 2006 - 22:09:41 CDT)
- Feature request: output to Blender 3D modelling software Ralph Jimenez (Tue Jul 11 2006 - 10:32:31 CDT)
- Re: Feature request: output to Blender 3D modelling software John Stone (Tue Jul 11 2006 - 11:06:43 CDT)
- Re: Feature request: output to Blender 3D modelling software Sabuj Pattanayek (Tue Jul 11 2006 - 13:19:33 CDT)
- please, give me a tip Yuri Nedialkov (Tue Jul 11 2006 - 10:02:20 CDT)
- lammps and vmd H Q (Mon Jul 10 2006 - 22:04:20 CDT)
- Please, help Yuri Nedialkov (Mon Jul 10 2006 - 13:48:35 CDT)
- updating display of atoms in contact Ting Wang (Mon Jul 10 2006 - 16:39:59 CDT)
- Biometric Case Study Presentations Available (no charge), data mining and predictive modeling Lisa Solomon (Mon Jul 10 2006 - 12:22:37 CDT)
- autoionize plugin.. hl332_at_drexel.edu (Mon Jul 10 2006 - 11:38:16 CDT)
- namdenergy plugin Chandra Ramananjara (Sun Jul 09 2006 - 23:47:10 CDT)
- residue list of within ? distance Ting Wang (Thu Jul 06 2006 - 16:46:44 CDT)
- Queries on making polymer Naser, Md Abu (Thu Jul 06 2006 - 14:42:49 CDT)
- VMD selection options and local density maps Urahata (Thu Jul 06 2006 - 14:39:22 CDT)
- VMD selection options and local density maps Urahata (Thu Jul 06 2006 - 13:06:53 CDT)
- Missing atom error while atoms exist in pdb Rima Chaudhuri (Thu Jul 06 2006 - 11:05:50 CDT)
- xyz animation Jayendra Balasubramanian (Thu Jul 06 2006 - 11:00:52 CDT)
- VMD as background job on multiprocessor machine doesn't work? Jan Saam (Wed Jul 05 2006 - 19:46:13 CDT)
- pdb file reading error Rima Chaudhuri (Wed Jul 05 2006 - 12:16:59 CDT)
- 3Dconnexion SpaceTraveler works Eugen Leitl (Wed Jul 05 2006 - 08:21:00 CDT)
- 3Dconnexion SpaceTraveler works Eugen Leitl (Wed Jul 05 2006 - 07:54:46 CDT)
- Movie Maker in VMD Adrian Koh (Wed Jul 05 2006 - 04:30:49 CDT)
- how to prevent molecule jump around Dongsheng Zhang (Wed Jul 05 2006 - 00:35:41 CDT)
- debug Vivek Sharma (Tue Jul 04 2006 - 01:07:20 CDT)
- Trajectory Analysis Javad Azadi (Tue Jul 04 2006 - 11:14:36 CDT)
- Renaming Molecule Names in existing .xyz trajectory files Adrian Koh (Tue Jul 04 2006 - 01:44:28 CDT)
- movies on a mac Mark Lorch (Mon Jul 03 2006 - 10:13:49 CDT)
- Volume slices of Gaussian Cube Files: Color scale Berit Hinnemann (Thu Jun 29 2006 - 13:42:05 CDT)
- Correlated motion Leyla Celik (Wed Jun 28 2006 - 11:19:27 CDT)
- How to color the atoms based on the stress Zhenyu Yang (Wed Jun 28 2006 - 02:17:09 CDT)
- coordinate translation ziemys_at_ecr6.ohio-state.edu (Tue Jun 27 2006 - 11:04:28 CDT)
- VMD performance bottlenecks Sacerdoti, Federico (Tue Jun 27 2006 - 09:24:16 CDT)
- VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Brett Pemberton (Tue Jun 27 2006 - 00:52:41 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed John Stone (Tue Jun 27 2006 - 17:15:03 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Brett Pemberton (Tue Jun 27 2006 - 18:57:15 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Axel Kohlmeyer (Tue Jun 27 2006 - 19:53:00 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Brett Pemberton (Tue Jun 27 2006 - 20:59:56 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Axel Kohlmeyer (Tue Jun 27 2006 - 22:17:01 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Brett Pemberton (Tue Jun 27 2006 - 22:37:59 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Brett Pemberton (Tue Jun 27 2006 - 18:57:15 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed John Stone (Tue Jun 27 2006 - 17:15:03 CDT)
- Tcl commands on Mac Oliver Inderwildi (Mon Jun 26 2006 - 17:51:15 CDT)
- bonds forming during simulation Sandeep Prakash (Mon Jun 26 2006 - 12:59:50 CDT)
- to create simply a box of water molecules. Margaret Shun Cheung (Sat Jun 24 2006 - 19:46:11 CDT)
- GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762) Hans Martin Senn (Mon Jun 26 2006 - 03:01:03 CDT)
- bond information in psf file Xu (Sat Jun 24 2006 - 20:51:27 CDT)
- water box... ivana adamovic (Sat Jun 24 2006 - 08:37:57 CDT)
- a question about "measure fit" dwang_at_cs.kent.edu (Thu Jun 22 2006 - 20:36:59 CDT)
- problem with measure command Ana Celia Araujo Vila Verde (Fri Jun 23 2006 - 10:22:49 CDT)
- psfgen Marcela Madrid (Thu Jun 22 2006 - 15:28:23 CDT)
- Is there any script to analyze radius gyration, center of mass of namd traj file dcd? Youyong Li (Thu Jun 22 2006 - 08:23:47 CDT)
- error message occurred in RMSD Trajectory Tool Margaret Shun Cheung (Thu Jun 22 2006 - 11:28:10 CDT)
- error using Namdenergy Chandra Ramananjara (Wed Jun 21 2006 - 15:04:19 CDT)
- (no subject) Hai-Jun Su (Wed Jun 21 2006 - 12:22:29 CDT)
- Average Structure and RMSD griadi_at_utalca.cl (Wed Jun 21 2006 - 11:28:33 CDT)
- align and superimpose crd structures. Margaret Shun Cheung (Wed Jun 21 2006 - 09:12:37 CDT)
- RMSF ? ziemys_at_ecr6.ohio-state.edu (Tue Jun 20 2006 - 15:33:32 CDT)
- Making a Movie Joanne Hanna (Tue Jun 20 2006 - 09:38:06 CDT)
- Compiling problem angel (Mon Jun 19 2006 - 14:23:04 CDT)
- VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed Jinhua Zhang (Mon Jun 19 2006 - 13:28:18 CDT)
- Re: vmd display problem Dongsheng Zhang (Mon Jun 19 2006 - 13:17:23 CDT)
- Compilation propblem angel (Mon Jun 19 2006 - 12:26:52 CDT)
- vmd display problem Dongsheng Zhang (Sun Jun 18 2006 - 22:04:53 CDT)
- the python library error in VMD when do IED Shulin Zhuang (Thu Jun 15 2006 - 20:40:23 CDT)
- problem in minimization while running Moumita Maiti (Thu Jun 15 2006 - 15:59:50 CDT)
- psfgen: last CTER does not work Morad Alawneh (Thu Jun 15 2006 - 14:30:14 CDT)
- error Autoimd Juan de Dios Lopez Castro (Thu Jun 15 2006 - 04:04:02 CDT)
- user-defined movie Ting Wang (Wed Jun 14 2006 - 16:44:22 CDT)
- how to change paramters in making movie Dongsheng Zhang (Wed Jun 14 2006 - 12:33:09 CDT)
- the patching problem in psfgen Moumita Maiti (Wed Jun 14 2006 - 06:13:20 CDT)
- RMSD of not fitted region Ting Wang (Mon Jun 12 2006 - 19:24:02 CDT)
- fading rep scripts Brian Bennion (Mon Jun 12 2006 - 16:41:38 CDT)
- (no subject) Zara Sands (Mon Jun 12 2006 - 06:36:34 CDT)
- missing" Number of frames to render" in VMD window movie generator pkb bioinfo (Mon Jun 12 2006 - 05:39:40 CDT)
- python - writes frames to pdb files Per Jr. Greisen (Sat Jun 10 2006 - 06:19:11 CDT)
- animate with varying atom numbers Rene (Fri Jun 09 2006 - 12:53:59 CDT)
- RMSD Calculator Tamal Banerjee (Thu Jun 08 2006 - 08:37:43 CDT)
- membrane plugin (IRIX version) lothar esser (Wed Jun 07 2006 - 14:26:28 CDT)
- where's the download link for one specific plugin? JunJun Liu (Wed Jun 07 2006 - 12:26:41 CDT)
- Simple one-liner? Gustavo Seabra (Wed Jun 07 2006 - 10:56:02 CDT)
- problem with installation Yuan Zhang (Wed Jun 07 2006 - 10:27:51 CDT)
- how to make movies from HISTORY file Come On (Tue Jun 06 2006 - 13:11:55 CDT)
- (no subject) Sam Ansari (Tue Jun 06 2006 - 06:13:16 CDT)
- Qtight=22?= selection ziemys_at_ecr6.ohio-state.edu (Mon Jun 05 2006 - 15:36:37 CDT)
- vmd in fedora core 5 saravana prakash (Sun Jun 04 2006 - 07:39:16 CDT)
- Small molecules alignment with VMD Alexe Bojovschi (Sun Jun 04 2006 - 23:16:47 CDT)
- Calculating RMSF plots without using scripts!!! Robert Selwyne (Mon Jun 05 2006 - 03:36:54 CDT)
- the patch between segments for multiple chains molecule. Moumita Maiti (Fri Jun 02 2006 - 12:14:58 CDT)
- vmd 1.8.5 L. Michel Espinoza-Fonseca (Fri Jun 02 2006 - 12:14:46 CDT)
- psf generation Moumita Maiti (Fri Jun 02 2006 - 11:56:17 CDT)
- How to show 3D images in the display window of VMD ikek70 (Fri Jun 02 2006 - 11:15:20 CDT)
- Incomplete Display Vineet Pande (Fri Jun 02 2006 - 09:17:51 CDT)
- Global Command to load 200 pdb files, without using script files Robert Selwyne (Fri Jun 02 2006 - 08:47:35 CDT)
- Problems with APBS Compatibility Vyom Sharma (Thu Jun 01 2006 - 17:34:04 CDT)
- error. Autoimd Juan de Dios Lopez Castro (Thu Jun 01 2006 - 05:21:51 CDT)
- file bigger than 2GB snoze pa (Thu Jun 01 2006 - 10:35:04 CDT)
- simple plugin ikek70 (Wed May 31 2006 - 15:35:53 CDT)
- NewCartoon and mol2 files David Chalmers (Wed May 31 2006 - 06:11:33 CDT)
- AMD64 vmd installation problems simon whitehead (Wed May 31 2006 - 04:41:36 CDT)
- secondary structure assignment L. Michel Espinoza-Fonseca (Tue May 30 2006 - 16:53:51 CDT)
- PDB CONECT Mihaly Mezei (Tue May 30 2006 - 15:26:36 CDT)
- contact between 2 residues L. Michel Espinoza-Fonseca (Tue May 30 2006 - 14:03:06 CDT)
- disulphide bond Naser, Md Abu (Tue May 30 2006 - 13:09:43 CDT)
- catDCD 4.0 and xplor Peter Jones (Mon May 29 2006 - 23:23:10 CDT)
- how to save a structure after alignment? Guo Zhi (Sun May 28 2006 - 04:33:44 CDT)
- paratool ? Monique Laberge (Fri May 26 2006 - 19:19:35 CDT)
- Re: (鐟炴槦鎻愮ず-姝ら偖浠跺彲鑳芥槸鍨冨溇閭欢)Re: gamess plugin error when using symmetry operations mashaojienuaa (Fri May 26 2006 - 20:49:03 CDT)
- vmd on opteron Leandro Mart韓ez (Fri May 26 2006 - 15:01:30 CDT)
- extended xyz Ioana Cozmuta (Fri May 26 2006 - 10:57:03 CDT)
- number of frames in pdb file? Samuel Flores (Thu May 25 2006 - 20:08:23 CDT)
- Re: the crystal structure of gold: questions about making the psf and about visualization in VMD; John Stone (Thu May 25 2006 - 14:48:50 CDT)
- VolMap use !! Xavier Periole (Thu May 25 2006 - 13:07:42 CDT)
- something about simulation of small molecules in NAMD q=CF=20=B3=C2?= (Thu May 25 2006 - 05:02:31 CDT)
- Fw: (瑞星提示-此邮件可能是垃圾邮件)Re: gamess plugin error when using symmetry operations mashaojienuaa (Thu May 25 2006 - 01:56:08 CDT)
- color by charge (can colors be changed?) Jeffrey A Tibbitt (Thu May 25 2006 - 01:14:37 CDT)
- RE: change default drawing and coloring method Habib.Alehossein_at_csiro.au (Wed May 24 2006 - 22:52:36 CDT)
- Compilation angel (Wed May 24 2006 - 17:44:39 CDT)
- data file extensions Kurt Smith (Wed May 24 2006 - 11:41:21 CDT)
- rmsf Leyla Celik (Wed May 24 2006 - 06:07:55 CDT)
- xyz files into dcd trajectory Ioana Cozmuta (Tue May 23 2006 - 18:55:51 CDT)
- the crystal structure of gold: questions about making the psf and about visualization in VMD; update Ana Celia Araujo Vila Verde (Tue May 23 2006 - 14:47:00 CDT)
- installation problem: InstallShield ganderle_at_optonline.net (Tue May 23 2006 - 14:26:50 CDT)
- How to make bold font? Gustavo Seabra (Tue May 23 2006 - 13:40:02 CDT)
- the crystal structure of gold: questions about making the psf and about visualization in VMD Ana Celia Araujo Vila Verde (Tue May 23 2006 - 11:36:54 CDT)
- gamess plugin error when using symmetry operations mashaojienuaa (Tue May 23 2006 - 10:02:36 CDT)
- change default drawing and coloring method Christian Fufezan (Mon May 22 2006 - 19:08:17 CDT)
- Gaussian Cube file with VMD Berit Hinnemann (Mon May 22 2006 - 18:29:12 CDT)
- split snoze pa (Mon May 22 2006 - 14:43:32 CDT)
- RE: Solutions for stereo - is CRT technology dead? Warren DeLano (Mon May 22 2006 - 12:34:56 CDT)
- Stereo VMD on Mac G5 Kim, Kwiseon (Mon May 22 2006 - 12:05:23 CDT)
- Solutions for stereo - is CRT technology dead? Marc Baaden (Mon May 22 2006 - 04:33:17 CDT)
- redhat linux vmd a a (Mon May 22 2006 - 03:51:59 CDT)
- gamess plugin error when using symmetry operations mashaojienuaa (Sun May 21 2006 - 21:12:20 CDT)
- scrolling up in vmd console Kenley Barrett (Sun May 21 2006 - 13:37:04 CDT)
- how to enable the vmd cachemode in .vmdrc? Guo Zhi (Sun May 21 2006 - 02:25:38 CDT)
- How do I change details of a drawing style using the text interface? Dr. Seth Olsen (Fri May 19 2006 - 21:52:05 CDT)
- Plugin compilation problem angel (Thu May 18 2006 - 17:41:16 CDT)
- reporting various NVidia driver bugs... John Stone (Thu May 18 2006 - 16:14:43 CDT)
- water molecules in residue interaction genie lfs (Thu May 18 2006 - 06:12:53 CDT)
- reading DLPoly VMD 1.8.4 Javier Sacristan (Wed May 17 2006 - 17:55:26 CDT)
- How to make a disulphide bond lily jin (Tue May 16 2006 - 13:02:51 CDT)
- Multiple data files on command line does not seem to work Rob (Mon May 15 2006 - 22:36:09 CDT)
- measure avpos ziemys_at_ecr6.ohio-state.edu (Mon May 15 2006 - 14:43:28 CDT)
- Plugin compilation angel (Fri May 12 2006 - 16:19:47 CDT)
- NAMD support for MNDO semi-empirical model Chandra Ramananjara (Mon May 15 2006 - 10:34:07 CDT)
- skip frames in dcd file=> no effect? M. Emal Alekozai (Mon May 15 2006 - 06:58:09 CDT)
- secondary structure assignment Melquiond (Sun May 14 2006 - 15:34:43 CDT)
- Gamepads and VMD (and MacOSX and ForceFeedback) Marc Baaden (Fri May 12 2006 - 10:13:46 CDT)
- ati interlace mode Osmany guirola Cruz (Fri May 12 2006 - 12:12:42 CDT)
- Re: ati interlace mode John Stone (Mon May 15 2006 - 12:01:50 CDT)
- Re: ati interlace mode Osmany guirola Cruz (Mon May 15 2006 - 10:03:44 CDT)
- Re: ati interlace mode Sabuj Pattanayek (Mon May 15 2006 - 17:00:20 CDT)
- Re: ati interlace mode Osmany guirola Cruz (Tue May 16 2006 - 07:33:00 CDT)
- Re: ati interlace mode John Stone (Tue May 16 2006 - 10:47:03 CDT)
- Re: ati interlace mode Osmany guirola Cruz (Tue May 16 2006 - 14:13:55 CDT)
- Re: ati interlace mode John Stone (Wed May 17 2006 - 13:07:24 CDT)
- Re: ati interlace mode Osmany guirola Cruz (Wed May 17 2006 - 13:45:54 CDT)
- Re: ati interlace mode Sabuj Pattanayek (Wed May 17 2006 - 16:44:11 CDT)
- Re: ati interlace mode John Stone (Thu May 18 2006 - 18:32:03 CDT)
- Re: ati interlace mode Sabuj Pattanayek (Thu May 18 2006 - 20:54:06 CDT)
- Re: ati interlace mode John Stone (Fri May 19 2006 - 11:45:48 CDT)
- Re: ati interlace mode Osmany guirola Cruz (Sat May 20 2006 - 14:52:25 CDT)
- Re: ati interlace mode Osmany guirola Cruz (Mon May 15 2006 - 10:03:44 CDT)
- Re: ati interlace mode John Stone (Mon May 15 2006 - 12:01:50 CDT)
- wraping two chains from a simulation L. Michel Espinoza-Fonseca (Fri May 12 2006 - 02:40:59 CDT)
- psfgen for lipid Ting Wang (Thu May 11 2006 - 15:09:07 CDT)
- bug in membrane plugin Ting Wang (Thu May 11 2006 - 13:47:11 CDT)
- renderman output? Ralph Jimenez (Wed May 10 2006 - 15:50:47 CDT)
- How to select water near a certain residue if it is outside of the water box? TZU-LAN YEH (Wed May 10 2006 - 00:11:26 CDT)
- Display the electrostatic character (delphimap) on the structure file Eric Hajjar (Tue May 09 2006 - 05:18:37 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file John Stone (Tue May 09 2006 - 09:25:09 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file Eric Hajjar (Thu May 11 2006 - 01:18:54 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file John Stone (Mon May 15 2006 - 12:15:11 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file Eric Hajjar (Tue May 16 2006 - 01:51:14 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file John Stone (Tue May 16 2006 - 13:14:20 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file Eric Hajjar (Wed May 24 2006 - 02:48:31 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file John Stone (Wed May 24 2006 - 13:37:50 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file John Stone (Mon May 15 2006 - 12:29:27 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file Eric Hajjar (Thu May 11 2006 - 01:18:54 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file John Stone (Tue May 09 2006 - 09:25:09 CDT)
- How to access the subset after 'fit' and 'move' ? ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:50:55 CDT)
- (no subject) ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:41:21 CDT)
- How to pick up the lost periodic information? Guo Zhi (Sun May 07 2006 - 10:32:16 CDT)
- Fwd: How to pick up the lost periodic information? Guo Zhi (Mon May 08 2006 - 09:04:46 CDT)
- Re: Fwd: How to pick up the lost periodic information? Axel Kohlmeyer (Mon May 08 2006 - 11:46:49 CDT)
- Re: Fwd: How to pick up the lost periodic information? dimka (Mon May 08 2006 - 12:08:53 CDT)
- Re: How to pick up the lost periodic information? Marc Q. Ma (Mon May 08 2006 - 14:05:31 CDT)
- Re: How to pick up the lost periodic information? John Stone (Mon May 08 2006 - 15:40:30 CDT)
- Re: How to pick up the lost periodic information? Guo Zhi (Mon May 08 2006 - 20:57:20 CDT)
- Re: How to pick up the lost periodic information? Marc Q. Ma (Tue May 09 2006 - 08:21:44 CDT)
- Re: How to pick up the lost periodic information? John Stone (Tue May 09 2006 - 09:16:59 CDT)
- Re: How to pick up the lost periodic information? John Stone (Tue May 09 2006 - 09:21:31 CDT)
- Re: How to pick up the lost periodic information? Guo Zhi (Tue May 09 2006 - 22:28:42 CDT)
- Re: Fwd: How to pick up the lost periodic information? Axel Kohlmeyer (Mon May 08 2006 - 11:46:49 CDT)
- Fwd: How to pick up the lost periodic information? Guo Zhi (Mon May 08 2006 - 09:04:46 CDT)
- New test version posted... John Stone (Fri May 05 2006 - 19:39:47 CDT)
- writing charmm psf files MW Van der Kamp, School of Chemistry (Fri May 05 2006 - 09:02:37 CDT)
- povray problem: degenerate cylinder Amadeu (Fri May 05 2006 - 07:09:51 CDT)
- script for multiple structure superimposition? Shirley Li (Thu May 04 2006 - 16:48:33 CDT)
- plotting x y z data Prof. Y. U. Sasidhar (Thu May 04 2006 - 02:14:38 CDT)
- selecting frames from trajectory Raul Araya Secchi (Wed May 03 2006 - 16:19:21 CDT)
- Re: selecting frames from trajectory John Stone (Wed May 03 2006 - 17:52:21 CDT)
- Re: selecting frames from trajectory John Stone (Wed May 03 2006 - 18:12:04 CDT)
- visualizing biological molecule? Samuel Flores (Wed May 03 2006 - 21:54:45 CDT)
- Re: visualizing biological molecule? John Stone (Thu May 04 2006 - 10:57:22 CDT)
- RE: visualizing biological molecule? Samuel Flores (Thu May 04 2006 - 19:47:43 CDT)
- Re: visualizing biological molecule? John Stone (Thu May 04 2006 - 19:56:50 CDT)
- viewing heteroatoms? Samuel Flores (Thu May 04 2006 - 20:05:26 CDT)
- Re: viewing heteroatoms? John Stone (Thu May 04 2006 - 20:15:36 CDT)
- RE: visualizing biological molecule? Samuel Flores (Thu May 04 2006 - 20:00:28 CDT)
- Re: selecting frames from trajectory John Stone (Wed May 03 2006 - 18:12:04 CDT)
- Re: selecting frames from trajectory Luis Gracia (Wed May 03 2006 - 19:17:09 CDT)
- Re: selecting frames from trajectory John Stone (Wed May 03 2006 - 17:52:21 CDT)
- missing cell length on DCD ziemys_at_ecr6.ohio-state.edu (Wed May 03 2006 - 14:04:48 CDT)
- Water and protein Al-Rawi, Ahlam (Wed May 03 2006 - 13:40:44 CDT)
- Using RMSD without loading all structures? Gustavo Seabra (Wed May 03 2006 - 11:55:25 CDT)
- dlpoly history files in vmd 1.8.4 Mgr. Lubos Vrbka (Wed May 03 2006 - 02:26:50 CDT)
- Re: dlpoly history files in vmd 1.8.4 John Stone (Wed May 03 2006 - 10:24:15 CDT)
- Re: dlpoly history files in vmd 1.8.4 Mgr. Lubos Vrbka (Wed May 03 2006 - 14:24:57 CDT)
- Re: dlpoly history files in vmd 1.8.4 John Stone (Wed May 03 2006 - 17:34:16 CDT)
- Re: dlpoly history files in vmd 1.8.4 Mgr. Lubos Vrbka (Thu May 04 2006 - 01:09:54 CDT)
- Re: dlpoly history files in vmd 1.8.4 John Stone (Thu May 04 2006 - 08:28:45 CDT)
- Re: dlpoly history files in vmd 1.8.4 John Stone (Thu May 04 2006 - 10:38:26 CDT)
- Re: dlpoly history files in vmd 1.8.4 Mgr. Lubos Vrbka (Fri May 05 2006 - 00:48:51 CDT)
- Refreshing the screen Chang Hu (Thu May 04 2006 - 11:58:12 CDT)
- Re: Refreshing the screen John Stone (Thu May 04 2006 - 12:25:38 CDT)
- Re: Re: Refreshing the screen Chang Hu (Thu May 04 2006 - 13:24:47 CDT)
- Re: Re: Refreshing the screen Chang Hu (Thu May 04 2006 - 14:12:16 CDT)
- Re: Re: Refreshing the screen John Stone (Thu May 04 2006 - 17:09:17 CDT)
- NAMD from command line args Chang Hu (Sat May 06 2006 - 21:09:53 CDT)
- Re: NAMD from command line args John Stone (Sat May 06 2006 - 21:25:47 CDT)
- Re: dlpoly history files in vmd 1.8.4 Mgr. Lubos Vrbka (Wed May 03 2006 - 14:24:57 CDT)
- Re: dlpoly history files in vmd 1.8.4 John Stone (Wed May 03 2006 - 10:24:15 CDT)
- search path and naming conventions for custom TCL scripts Enzo Vitale (Wed May 03 2006 - 09:13:42 CDT)
- Re: search path and naming conventions for custom TCL scripts John Stone (Wed May 03 2006 - 10:12:03 CDT)
- Re: search path and naming conventions for custom TCL scripts Axel Kohlmeyer (Wed May 03 2006 - 10:29:29 CDT)
- Re: search path and naming conventions for custom TCL scripts Eduard Schreiner (Wed May 03 2006 - 12:35:15 CDT)
- cavity/pocket representation Wei Fu (Linda) (Tue May 02 2006 - 13:50:38 CDT)
- PSFGEN NAD spilts up in 3 Per Jr. Greisen (Tue May 02 2006 - 10:42:29 CDT)
- ppmtompeg James Rustad (Tue May 02 2006 - 10:39:45 CDT)
- saving coordinates of expanded cell James Rustad (Tue May 02 2006 - 10:36:26 CDT)
- OFF drawing method Leandro Mart韓ez (Tue May 02 2006 - 09:53:19 CDT)
- coordinates of an atom Enzo Vitale (Tue May 02 2006 - 09:39:10 CDT)
- adding hydrogen atoms Naser, Md Abu (Tue May 02 2006 - 09:20:34 CDT)
- Compile of OpenGL shader vmdsphere failed Marc Petitmermet (Tue May 02 2006 - 05:45:03 CDT)
- Playing part of a trajectory using TCL David Chalmers (Tue May 02 2006 - 05:30:37 CDT)
- one residue rmsd snoze pa (Mon May 01 2006 - 17:49:02 CDT)
- loading amber topology L. Michel Espinoza-Fonseca (Mon May 01 2006 - 13:43:12 CDT)
- Re: vmd-l digest V1 #514 Fred de Lamotte (Sat Apr 29 2006 - 08:43:56 CDT)
- VMD on LINUX with CAVELib ELENA S SLOBOUNOV (Fri Apr 28 2006 - 16:25:13 CDT)
- hiding and renaming of graphical objects Enzo Vitale (Fri Apr 28 2006 - 11:54:30 CDT)
- Re: hiding and renaming of graphical objects Axel Kohlmeyer (Fri Apr 28 2006 - 12:32:59 CDT)
- Re: hiding and renaming of graphical objects John Stone (Fri Apr 28 2006 - 12:45:21 CDT)
- Building VMD in Windows Chang Hu (Sat Apr 29 2006 - 22:12:23 CDT)
- Re: Building VMD in Windows John Stone (Sat Apr 29 2006 - 22:48:09 CDT)
- Re: Building VMD in Windows Chang Hu (Sun Apr 30 2006 - 01:07:52 CDT)
- Re: Building VMD in Windows John Stone (Sun Apr 30 2006 - 09:11:01 CDT)
- Re: Building VMD in Windows Chang Hu (Sun Apr 30 2006 - 22:42:34 CDT)
- Re: Re: Building VMD in Windows John Stone (Mon May 01 2006 - 10:17:19 CDT)
- VMD with charmm program mahmoud (Sun Apr 30 2006 - 04:59:52 CDT)
- Re: VMD with charmm program John Stone (Sun Apr 30 2006 - 09:24:22 CDT)
- Re: hiding and renaming of graphical objects John Stone (Fri Apr 28 2006 - 12:45:21 CDT)
- Re: hiding and renaming of graphical objects Axel Kohlmeyer (Fri Apr 28 2006 - 12:32:59 CDT)
- OpenGL Programmable Shading not available. Vlad Cojocaru (Fri Apr 28 2006 - 08:52:49 CDT)
- Salt bridges Nuno R. L. Ferreira (Thu Apr 27 2006 - 09:14:32 CDT)
- Problems with mouse programming in VMD Chang Hu (Wed Apr 26 2006 - 23:19:57 CDT)
- Re: Problems with mouse programming in VMD John Stone (Thu Apr 27 2006 - 11:52:55 CDT)
- Re: Problems with mouse programming in VMD Chang Hu (Thu Apr 27 2006 - 12:36:23 CDT)
- Re: Problems with mouse programming in VMD John Stone (Thu Apr 27 2006 - 12:45:44 CDT)
- Re: Problems with mouse programming in VMD Chang Hu (Sat Apr 29 2006 - 21:05:37 CDT)
- Re: Problems with mouse programming in VMD John Stone (Sat Apr 29 2006 - 22:50:11 CDT)
- Re: Problems with mouse programming in VMD Chang Hu (Sun Apr 30 2006 - 01:03:07 CDT)
- Re: Problems with mouse programming in VMD John Stone (Sun Apr 30 2006 - 09:16:26 CDT)
- Re: Problems with mouse programming in VMD Chang Hu (Thu Apr 27 2006 - 12:36:23 CDT)
- Re: Problems with mouse programming in VMD John Stone (Thu Apr 27 2006 - 11:52:55 CDT)
- two references- I got them, thank you! Ioana Cozmuta (Wed Apr 26 2006 - 16:15:11 CDT)
- two references Ioana Cozmuta (Wed Apr 26 2006 - 15:18:28 CDT)
- Compiling problem angel (Wed Apr 26 2006 - 14:59:31 CDT)
- fedora core 5 and VMD 1.8.4 Brian Kidd (Tue Apr 25 2006 - 18:37:32 CDT)
- Re: fedora core 5 and VMD 1.8.4 John Stone (Tue Apr 25 2006 - 19:20:27 CDT)
- Re: fedora core 5 and VMD 1.8.4 Brian Kidd (Tue Apr 25 2006 - 20:06:50 CDT)
- Re: fedora core 5 and VMD 1.8.4 John Stone (Tue Apr 25 2006 - 22:51:55 CDT)
- Re: fedora core 5 and VMD 1.8.4 Brian Kidd (Tue Apr 25 2006 - 23:02:17 CDT)
- Re: fedora core 5 and VMD 1.8.4 John Stone (Tue Apr 25 2006 - 23:54:27 CDT)
- Secondary Structure along a trajectory Arneh Babakhani (Wed Apr 26 2006 - 18:44:21 CDT)
- Re: Secondary Structure along a trajectory L. Michel Espinoza-Fonseca (Thu Apr 27 2006 - 10:30:29 CDT)
- Re: Secondary Structure along a trajectory John Stone (Thu Apr 27 2006 - 11:12:29 CDT)
- Re: fedora core 5 and VMD 1.8.4 Brian Kidd (Tue Apr 25 2006 - 20:06:50 CDT)
- Re: fedora core 5 and VMD 1.8.4 John Stone (Tue Apr 25 2006 - 19:20:27 CDT)
- truncated octahedron from AMBER Kenley Barrett (Tue Apr 25 2006 - 13:05:06 CDT)
- Problem with VMD 1.8.4 on Mac OS X 10.4.6 PPC Matteo Dal Peraro (Tue Apr 25 2006 - 10:22:54 CDT)
- tcl question Mgr. Lubos Vrbka (Tue Apr 25 2006 - 03:31:16 CDT)
- Movie for Trajectory analysis Tamal Banerjee (Tue Apr 25 2006 - 00:09:17 CDT)
- Problem with wait daniel aguayo (Mon Apr 24 2006 - 20:39:19 CDT)
- Updated "Hull" source code for delaunay script... John Stone (Mon Apr 24 2006 - 20:11:50 CDT)
- rendering high resolution images Al Courey (Mon Apr 24 2006 - 16:19:52 CDT)
- tcl logging and plugins Jeffrey A Tibbitt (Mon Apr 24 2006 - 13:58:01 CDT)
- [Fwd: Re: bad angels] Peter Freddolino (Mon Apr 24 2006 - 10:15:42 CDT)
- bad angels genie lfs (Mon Apr 24 2006 - 05:06:32 CDT)
- RE: polynucleotide builder Jacob P鴋lsgaard (Mon Apr 24 2006 - 04:31:54 CDT)
- core dump Praveen Madala (Mon Apr 24 2006 - 03:14:15 CDT)
- polynucleotide builder Jean Richelle (Sun Apr 23 2006 - 17:05:17 CDT)
- peptide builder John Robinson (Fri Apr 21 2006 - 15:19:01 CDT)
- questions for 1.8.4 Nathan C. Rockwell (Fri Apr 21 2006 - 14:32:16 CDT)
- VMD's Python/Tcl - importing libraries ziemys_at_ecr6.ohio-state.edu (Fri Apr 21 2006 - 10:45:08 CDT)
- Apologizes for "How to select some sugar atoms" Jean Richelle (Fri Apr 21 2006 - 00:23:40 CDT)
- question Maria Konstantakaki (Thu Apr 20 2006 - 10:38:20 CDT)
- How to select some sugar atoms Jean Richelle (Thu Apr 20 2006 - 11:37:28 CDT)
- Python libs posted for VMD 1.8.4 users... John Stone (Wed Apr 19 2006 - 20:33:15 CDT)
- rms and align strucs andrea spitaleri (Wed Apr 19 2006 - 06:05:50 CDT)
- Unknown residue type ZN Per Jr. Greisen (Tue Apr 18 2006 - 08:22:33 CDT)
- vmd 1.8.4 on Fedora Core 5 Marc Petitmermet (Tue Apr 18 2006 - 06:13:18 CDT)
- Generating psfgen of multimeric protein complex Per Jr. Greisen (Tue Apr 18 2006 - 04:35:50 CDT)
- Announce: VMD 1.8.4 Released!! John Stone (Mon Apr 17 2006 - 11:37:34 CDT)
- How to deal with this sugar residues though psfgen? q=E2=BA=E9=C3=F7?= (Mon Apr 17 2006 - 06:22:22 CDT)
- breaking the DCD file Rima Chaudhuri (Sun Apr 16 2006 - 16:01:52 CDT)
- vmd 1.8a21 Dan Fishelovitch (Sun Apr 16 2006 - 10:02:34 CDT)
- Multiple residues at same position snoze pa (Sun Apr 16 2006 - 02:01:35 CDT)
- VMD-L: how to select water molecules between two residues in a trajectory. Margaret Shun Cheung (Sat Apr 15 2006 - 16:54:25 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. John Stone (Sat Apr 15 2006 - 17:17:16 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. Axel Kohlmeyer (Sat Apr 15 2006 - 20:31:11 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. Margaret Shun Cheung (Mon Apr 17 2006 - 09:38:54 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. Axel Kohlmeyer (Mon Apr 17 2006 - 10:50:38 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. Margaret Shun Cheung (Mon Apr 17 2006 - 11:16:18 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. John Stone (Mon Apr 17 2006 - 11:33:19 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. Axel Kohlmeyer (Mon Apr 17 2006 - 11:33:38 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. Margaret Shun Cheung (Mon Apr 17 2006 - 09:38:54 CDT)
- Generating PSF for 1JNO.pdb chain A Lin (Fri Apr 14 2006 - 10:29:07 CDT)
- write output pdb for lots of different selections Vlad Cojocaru (Thu Apr 13 2006 - 11:48:08 CDT)
- python ziemys_at_ecr6.ohio-state.edu (Thu Apr 13 2006 - 08:15:01 CDT)
- merging two pdbs??? genie lfs (Thu Apr 13 2006 - 01:26:36 CDT)
- a question about ribbon representation yzhou_at_chem.umn.edu (Wed Apr 12 2006 - 15:07:27 CDT)
- (xterm: Command not found) error Jorge Hernandez Fernandez (Wed Apr 12 2006 - 14:14:58 CDT)
- python math library Grischa Meyer (Tue Apr 11 2006 - 23:50:22 CDT)
- Re: python math library Justin Gullingsrud (Wed Apr 12 2006 - 19:02:22 CDT)
- Re: python math library John Stone (Wed Apr 12 2006 - 21:25:37 CDT)
- Re: python math library Grischa Meyer (Wed Apr 12 2006 - 21:57:19 CDT)
- Re: python math library John Stone (Wed Apr 12 2006 - 22:09:14 CDT)
- Re: python math library John Stone (Sun Apr 16 2006 - 00:34:52 CDT)
- Re: python math library Justin Gullingsrud (Sun Apr 16 2006 - 21:32:48 CDT)
- Re: python math library John Stone (Sun Apr 16 2006 - 22:08:42 CDT)
- Re: python math library John Stone (Wed Apr 12 2006 - 21:25:37 CDT)
- Re: python math library Justin Gullingsrud (Wed Apr 12 2006 - 19:02:22 CDT)
- VMD-L: how to rotate the molecule so the long axis will be aligned to Z Margaret Shun Cheung (Tue Apr 11 2006 - 20:13:21 CDT)
- reconstructing PMF Ioana Cozmuta (Tue Apr 11 2006 - 16:57:02 CDT)
- selection in different pcb images dimka (Tue Apr 11 2006 - 15:02:37 CDT)
- RMSD Anuradha Mittal (Tue Apr 11 2006 - 13:47:06 CDT)
- GLSL rendermode now OK on Linux with NVidia 8756 driver version Pietro Amodeo (Tue Apr 11 2006 - 12:24:49 CDT)
- distances Kenley Barrett (Tue Apr 11 2006 - 11:19:41 CDT)
- need HELP with psf file Praveen Madala (Mon Apr 10 2006 - 22:23:30 CDT)
- multiple peptides simulation Noriaki Okimoto (Mon Apr 10 2006 - 14:14:18 CDT)
- libcprts.so.6 not found by VMD on RedHat EL3 (ia64). guy.baudoux_at_gskbio.com (Mon Apr 10 2006 - 08:31:38 CDT)
- How to measure of radius of molecules? Taeho Kim (Mon Apr 10 2006 - 03:29:18 CDT)
- making movie with move on each frame... Ravinder Abrol (Fri Apr 07 2006 - 21:26:52 CDT)
- a name quesiton lily jin (Fri Apr 07 2006 - 11:19:41 CDT)
- parameter file for DAD Yu Wang (Fri Apr 07 2006 - 09:18:55 CDT)
- HELP Praveen Madala (Thu Apr 06 2006 - 18:26:23 CDT)
- proto-HEME parameters Cesar Millan (Thu Apr 06 2006 - 17:05:56 CDT)
- RNA first residue vvenditti_at_biochem.wisc.edu (Thu Apr 06 2006 - 14:20:33 CDT)
- dummy atoms and FEP Raul Araya Secchi (Thu Apr 06 2006 - 11:32:32 CDT)
- STL rendering Jean Richelle (Thu Apr 06 2006 - 09:39:53 CDT)
- how to plot waters h-bonded to a protein? J. Juraszek (Thu Apr 06 2006 - 08:57:08 CDT)
- NAMD to Amber AYTUG TUNCEL (Thu Apr 06 2006 - 08:46:10 CDT)
- download pdb files from PDB with vmd 1.8.4b10 Vlad Cojocaru (Thu Apr 06 2006 - 03:55:16 CDT)
- RE: python Numeric library problem Sacerdoti, Federico (Wed Apr 05 2006 - 20:16:44 CDT)
- membrane loading xiaoqin huang (Wed Apr 05 2006 - 14:25:12 CDT)
- graphic representation ivana adamovic (Wed Apr 05 2006 - 12:24:48 CDT)
- SURF -rendering problem M.S.Vijayabaskar (Wed Apr 05 2006 - 04:44:55 CDT)
- dict command andrea spitaleri (Wed Apr 05 2006 - 09:44:50 CDT)
- warning from psfgen: poorly guessed coordinates... Margaret Shun Cheung (Tue Apr 04 2006 - 17:17:17 CDT)
- box information dimka (Tue Apr 04 2006 - 17:18:30 CDT)
- question about psfgen Margaret Shun Cheung (Tue Apr 04 2006 - 16:23:25 CDT)
- Re: question about psfgen John Stone (Wed Apr 05 2006 - 22:57:32 CDT)
- Re: question about psfgen Marcos Sotomayor (Thu Apr 06 2006 - 00:02:47 CDT)
- Re: question about psfgen Margaret Shun Cheung (Thu Apr 06 2006 - 13:18:34 CDT)
- Re: question about psfgen Marcos Sotomayor (Thu Apr 06 2006 - 13:28:47 CDT)
- Re: question about psfgen Peter Freddolino (Thu Apr 06 2006 - 13:34:49 CDT)
- Re: question about psfgen Margaret Shun Cheung (Thu Apr 06 2006 - 13:45:26 CDT)
- Re: question about psfgen Margaret Shun Cheung (Thu Apr 06 2006 - 14:11:54 CDT)
- Re: question about psfgen Margaret Shun Cheung (Thu Apr 06 2006 - 14:50:58 CDT)
- Re: question about psfgen Peter Freddolino (Thu Apr 06 2006 - 15:40:05 CDT)
- Re: namd-l; question about psfgen (param for CT1?) Margaret Shun Cheung (Thu Apr 06 2006 - 15:53:20 CDT)
- Re: question about psfgen Marcos Sotomayor (Thu Apr 06 2006 - 00:02:47 CDT)
- Re: question about psfgen John Stone (Wed Apr 05 2006 - 22:57:32 CDT)
- ied on vmd L. Michel Espinoza-Fonseca (Tue Apr 04 2006 - 16:11:30 CDT)
- MacBookPro and VMD version ivana adamovic (Tue Apr 04 2006 - 13:39:38 CDT)
- python Numeric library problem Sacerdoti, Federico (Tue Apr 04 2006 - 11:11:16 CDT)
- alternative display mode of HBonds Jean Richelle (Tue Apr 04 2006 - 09:51:18 CDT)
- latest beta nVidia driver for Windows looks good so far... John Stone (Mon Apr 03 2006 - 20:00:50 CDT)
- WARNING: Coordinates will be rotated to comply ... Peter Hamm (Mon Apr 03 2006 - 08:01:57 CDT)
- question on vmd installation Shen (Mon Apr 03 2006 - 13:27:38 CDT)
- error during creat .psf file Taeho Kim (Mon Apr 03 2006 - 03:16:01 CDT)
- Re: vmd visualization problems with circular proteins John Stone (Sun Apr 02 2006 - 18:13:06 CDT)
- about viewing charge density jun (Sun Apr 02 2006 - 14:00:58 CDT)
- How to add some small peptides to a water box randomly ? q=E2=BA=E9=C3=F7?= (Sun Apr 02 2006 - 09:57:26 CDT)
- Compiling problem angel (Fri Mar 31 2006 - 15:57:47 CST)
- how to show biological unit coordiates from PDB using VMD? Margaret Shun Cheung (Fri Mar 31 2006 - 14:33:51 CST)
- Re: how to show biological unit coordiates from PDB using VMD? John Stone (Fri Mar 31 2006 - 15:52:08 CST)
- Re: how to show biological unit coordiates from PDB using VMD? John Stone (Fri Mar 31 2006 - 16:15:14 CST)
- Re: how to show biological unit coordiates from PDB using VMD? Margaret Shun Cheung (Tue Apr 04 2006 - 16:04:00 CDT)
- Re: how to show biological unit coordiates from PDB using VMD? Margaret Shun Cheung (Sat Sep 16 2006 - 11:06:13 CDT)
- Re: how to show biological unit coordiates from PDB using VMD? John Stone (Fri Mar 31 2006 - 15:52:08 CST)
- Re: stereo enabler Dan White (Fri Mar 31 2006 - 03:08:21 CST)
- Re: Stereo on non supported G5 Dan White (Fri Mar 31 2006 - 02:12:42 CST)
- RE: rmsd-fullthrottle.tcl problem Turman, Cheri M (Wed Mar 29 2006 - 20:25:40 CST)
- rmsd-fullthrottle.tcl problem Turman, Cheri M (Wed Mar 29 2006 - 19:34:29 CST)
- Re: namd-l: bulk density in RDF.tcl griadi_at_utalca.cl (Wed Mar 29 2006 - 16:55:07 CST)
- strange vdw representation behavior Mgr. Lubos Vrbka (Wed Mar 29 2006 - 14:08:57 CST)
- stereo on MacG5 Dan White (Wed Mar 29 2006 - 12:36:16 CST)
- RE: Stereo on MacG5 (single processor) for VMD, Chimera UCSF etc. Warren DeLano (Wed Mar 29 2006 - 11:54:16 CST)
- Genrating psf Per Jr. Greisen (Wed Mar 29 2006 - 10:50:38 CST)
- Re: script for cutting box John Stone (Wed Mar 29 2006 - 09:48:05 CST)
- Stereo on MacG5 (single processor) for VMD, Chimera UCSF etc. Peter Engelhardt (Tue Mar 28 2006 - 23:53:56 CST)
- parameter files lily jin (Tue Mar 28 2006 - 14:13:39 CST)
- problem with vmd Beniamino Sciacca (Tue Mar 28 2006 - 13:44:37 CST)
- Re: problem with vmd John Stone (Tue Mar 28 2006 - 14:06:30 CST)
- Re: problem with vmd Shulin Zhuang (Tue Mar 28 2006 - 20:13:46 CST)
- Re: problem with vmd Super Sayan (Wed Mar 29 2006 - 00:41:43 CST)
- Re: problem with vmd John Stone (Wed Mar 29 2006 - 10:05:30 CST)
- Re: problem with vmd Super Sayan (Wed Mar 29 2006 - 11:49:12 CST)
- Re: problem with vmd John Stone (Wed Mar 29 2006 - 14:26:40 CST)
- Re: problem with vmd Super Sayan (Thu Mar 30 2006 - 01:09:20 CST)
- Re: problem with vmd John Stone (Sun Apr 02 2006 - 20:11:42 CDT)
- Re: problem with vmd John Stone (Tue Mar 28 2006 - 14:06:30 CST)
- input file for PO3 lily jin (Tue Mar 28 2006 - 11:02:34 CST)
- Re: namd-l: Re: boubt about consistency of measures John Stone (Mon Mar 27 2006 - 21:37:55 CST)
- Some errors angel (Mon Mar 27 2006 - 18:51:51 CST)
- why the same operation vary so large Shulin Zhuang (Mon Mar 27 2006 - 08:31:20 CST)
- problem with viewing gromacs xtc files in vmd hayagreevan R (Mon Mar 27 2006 - 05:30:22 CST)
- minimize during FEP & OS-FEP Raul Araya Secchi (Fri Mar 24 2006 - 10:49:09 CST)
- Tcl scripting within NAMD configuration file Chandra Ramananjara (Fri Mar 24 2006 - 09:26:18 CST)
- error in psfgen file Rima Chaudhuri (Thu Mar 23 2006 - 20:20:10 CST)
- Possible error in aligning/computing RMSD of 2 molecules with three or two atoms Visvaldas Kairys (Thu Mar 23 2006 - 13:38:09 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms Jan Saam (Thu Mar 23 2006 - 15:30:53 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms Brian Bennion (Thu Mar 23 2006 - 17:22:15 CST)
- Big trr trajectory Anthony Cruz (Thu Mar 23 2006 - 13:27:17 CST)
- TCL scripting within NAMD Configuration File Chandra Ramananjara (Thu Mar 23 2006 - 09:12:56 CST)
- boubt about consistency of measures Sergio Anis (Thu Mar 23 2006 - 08:19:52 CST)
- extracting values from a dx file L. Michel Espinoza-Fonseca (Thu Mar 23 2006 - 07:45:35 CST)
- force over selection Ioana Cozmuta (Wed Mar 22 2006 - 23:51:46 CST)
- solvation Anuradha Mittal (Wed Mar 22 2006 - 17:38:38 CST)
- energy calculation in VMD lily jin (Wed Mar 22 2006 - 16:41:45 CST)
- Something about loading LAMMPS trace file q=CF=20=B3=C2?= (Wed Mar 22 2006 - 01:45:23 CST)
- Something about loading LAMMPS trace file q=CF=20=B3=C2?= (Wed Mar 22 2006 - 01:45:12 CST)
- euler angles pinisetty dinesh (Tue Mar 21 2006 - 19:07:47 CST)
- what is wrong with this script? lily jin (Tue Mar 21 2006 - 16:25:12 CST)
- Re: what is wrong with this script? Sergio Anis (Tue Mar 21 2006 - 18:52:51 CST)
- Re: what is wrong with this script? J閞鬽e H閚in (Wed Mar 22 2006 - 01:31:13 CST)
- Problem with differentiating atoms from different frames for dcd file Lin (Wed Mar 22 2006 - 10:16:44 CST)
- Re: Problem with differentiating atoms from different frames for dcd file John Stone (Wed Mar 22 2006 - 10:23:41 CST)
- Re: Problem with differentiating atoms from different frames for dcd file Lin (Fri Mar 24 2006 - 05:29:55 CST)
- Re: what is wrong with this script? J閞鬽e H閚in (Wed Mar 22 2006 - 01:31:13 CST)
- Re: what is wrong with this script? Sergio Anis (Tue Mar 21 2006 - 18:52:51 CST)
- distance tween two atoms lily jin (Tue Mar 21 2006 - 15:42:18 CST)
- movie quality degradation Wang, Yangzhou (Tue Mar 21 2006 - 10:50:45 CST)
- Re: pdb - generation Florian Haberl (Tue Mar 21 2006 - 09:06:57 CST)
- about the psfgen of vmd Shulin Zhuang (Tue Mar 21 2006 - 08:46:28 CST)
- pdb - generation Osmany guirola Cruz (Tue Mar 21 2006 - 06:39:31 CST)
- sausage nmr ensemble spitaleri.andrea_at_hsr.it (Tue Mar 21 2006 - 04:09:48 CST)
- VMD Command Pijush Ghosh (Tue Mar 21 2006 - 00:00:42 CST)
- autoionize "error procesing bonds" George M Giambasu (Mon Mar 20 2006 - 16:50:28 CST)
- Re: namd-l: what does "patch" mean? dimka (Sun Mar 19 2006 - 23:33:21 CST)
- Re: (瑞星提示-此邮件可能是垃圾邮件)Re: namd-l: error in membrane producing mashaojienuaa (Sun Mar 19 2006 - 20:19:40 CST)
- Poor Hydrogen Placement in AutoPSF Brian Bennion (Fri Mar 17 2006 - 16:39:15 CST)
- Re: Poor Hydrogen Placement in AutoPSF Peter Freddolino (Sun Mar 19 2006 - 14:51:49 CST)
- Re: Poor Hydrogen Placement in AutoPSF Brian Bennion (Mon Mar 20 2006 - 10:27:52 CST)
- Re: Poor Hydrogen Placement in AutoPSF Peter Freddolino (Mon Mar 20 2006 - 13:09:04 CST)
- Re: Poor Hydrogen Placement in AutoPSF Peter Freddolino (Mon Mar 20 2006 - 16:50:03 CST)
- Re: Poor Hydrogen Placement in AutoPSF Brian Bennion (Mon Mar 20 2006 - 16:54:20 CST)
- Re: Poor Hydrogen Placement in AutoPSF Peter Freddolino (Mon Mar 20 2006 - 17:00:30 CST)
- Re: Poor Hydrogen Placement in AutoPSF Brian Bennion (Mon Mar 20 2006 - 10:27:52 CST)
- Re: Poor Hydrogen Placement in AutoPSF Peter Freddolino (Sun Mar 19 2006 - 14:51:49 CST)
- Problem with gopython Ludovic P閠ain (Fri Mar 17 2006 - 07:19:11 CST)
- VMD 1.8.4b12 test version, Wiki / BioCoRE public area John Stone (Thu Mar 16 2006 - 16:44:57 CST)
- error loading dcd file on Windows XP Jindal Shah (Thu Mar 16 2006 - 15:18:24 CST)
- large selection Ioana Cozmuta (Tue Mar 14 2006 - 18:00:27 CST)
- Strange GLSL rendering Mario Valle (Tue Mar 14 2006 - 06:07:53 CST)
- cartoon selection Viswanadham Sridhara (Mon Mar 13 2006 - 13:02:53 CST)
- contact map definition Jindal Shah (Mon Mar 13 2006 - 11:21:20 CST)
- changing colours isosurface L. Michel Espinoza-Fonseca (Mon Mar 13 2006 - 10:44:23 CST)
- Re: OSX quad buffered stereo possible on older G5 with GeForce FX5200! Dan White (Mon Mar 13 2006 - 08:17:46 CST)
- user field memory demand Leandro Mart韓ez (Mon Mar 13 2006 - 08:10:16 CST)
- IMD with linux VMD client and IBM namd server Marc Baaden (Mon Mar 13 2006 - 07:29:36 CST)
- changing the color of subset of representation Jeffrey Tseng (Sun Mar 12 2006 - 14:52:15 CST)
- Re: changing the color of subset of representation John Stone (Mon Mar 13 2006 - 11:41:19 CST)
- Re: changing the color of subset of representation Jeffrey Tseng (Mon Mar 13 2006 - 14:12:09 CST)
- Re: changing the color of subset of representation John Stone (Tue Mar 14 2006 - 00:39:40 CST)
- Re: changing the color of subset of representation Jeffrey Tseng (Tue Mar 14 2006 - 03:18:32 CST)
- Re: changing the color of subset of representation John Stone (Tue Mar 14 2006 - 15:34:57 CST)
- Re: changing the color of subset of representation Jeffrey Tseng (Wed Mar 15 2006 - 00:03:03 CST)
- Re: changing the color of subset of representation John Stone (Wed Mar 15 2006 - 10:05:55 CST)
- Re: changing the color of subset of representation John Stone (Wed Mar 15 2006 - 10:09:46 CST)
- Re: changing the color of subset of representation Jeffrey Tseng (Wed Mar 15 2006 - 14:54:58 CST)
- Re: changing the color of subset of representation John Stone (Wed Mar 15 2006 - 18:59:20 CST)
- Re: changing the color of subset of representation Jeffrey Tseng (Mon Mar 13 2006 - 14:12:09 CST)
- Re: changing the color of subset of representation John Stone (Mon Mar 13 2006 - 11:41:19 CST)
- Convert an ascii matrix to an image Nuno R. L. Ferreira (Sat Mar 11 2006 - 13:05:10 CST)
- Re: Convert an ascii matrix to an image Nicolas Sapay (Mon Mar 13 2006 - 04:34:22 CST)
- Re: Convert an ascii matrix to an image J閞鬽e H閚in (Mon Mar 13 2006 - 07:33:11 CST)
- Re: Convert an ascii matrix to an image John Stone (Mon Mar 13 2006 - 10:18:17 CST)
- Re: Convert an ascii matrix to an image Axel Kohlmeyer (Sat Mar 11 2006 - 16:25:18 CST)
- VMD script lily jin (Fri Mar 10 2006 - 13:41:03 CST)
- Re: VMD script John Stone (Fri Mar 10 2006 - 13:47:47 CST)
- Re: VMD script Mario Valle (Sun Mar 12 2006 - 00:43:26 CST)
- electrostatic potential maps in vmd Andrei A Golosov (Fri Mar 10 2006 - 10:52:14 CST)
- RE: namd-l: Aligning structures EPF \(Esben Peter Friis\) (Fri Mar 10 2006 - 01:34:40 CST)
- selecting protein + water shell L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 09:43:34 CST)
- radial distribution L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 08:10:56 CST)
- RE: namd-l: is possible to remove the waterbox before running VMD Wolbach, Jeffrey P \(WOLBACH\) (Thu Mar 09 2006 - 13:45:20 CST)
- is possible to remove the waterbox before running VMD lily jin (Thu Mar 09 2006 - 10:34:02 CST)
- Re: is possible to remove the waterbox before running VMD John Stone (Thu Mar 09 2006 - 10:39:27 CST)
- Re: namd-l: is possible to remove the waterbox before running VMD Sterling Paramore (Thu Mar 09 2006 - 11:50:08 CST)
- Re: namd-l: is possible to remove the waterbox before running VMD griadi_at_utalca.cl (Thu Mar 09 2006 - 12:56:38 CST)
- a display problem lily jin (Thu Mar 09 2006 - 10:22:57 CST)
- nVidia Quadro FX1400 Stereo Clone Mode Paul Van Allsburg (Wed Mar 08 2006 - 13:01:31 CST)
- About VMD compile in win32 mustapha.hamdi_at_ensi-bourges.fr (Wed Mar 08 2006 - 12:04:29 CST)
- Analysis Anthony Cruz (Wed Mar 08 2006 - 13:37:21 CST)
- energy minimization of a trajectory with vmd+namd L. Michel Espinoza-Fonseca (Wed Mar 08 2006 - 08:41:37 CST)
- drawing a truncated octahedron Vlad Cojocaru (Wed Mar 08 2006 - 05:26:06 CST)
- Atom name label FyD (Wed Mar 08 2006 - 04:26:17 CST)
- change default bond cutoff distance Weiqiang Wang (Tue Mar 07 2006 - 03:25:53 CST)
- pbc and vmd L. Michel Espinoza-Fonseca (Sun Mar 05 2006 - 18:06:50 CST)
- manipulate DLPOLY HISTORY files Javier Sacristan (Fri Mar 03 2006 - 15:43:37 CST)
- Summing volumetric data within a sub-volume of a simulation cell Joshua Speidel (Thu Mar 02 2006 - 17:41:23 CST)
- (no subject) Naser, Md Abu (Wed Mar 01 2006 - 14:17:10 CST)
- shutter glasses with VMD Hannes Barsch (Wed Mar 01 2006 - 10:33:40 CST)
- selection of atoms on INSIDE protein ziemys_at_ecr6.ohio-state.edu (Tue Feb 28 2006 - 18:50:00 CST)
- Q:selection of atoms on the surface of a molecule kovzany_at_go.com (Tue Feb 28 2006 - 17:22:13 CST)
- question about electrostatic potential maps ivana adamovic (Mon Feb 27 2006 - 12:19:48 CST)
- Re: question about electrostatic potential maps John Stone (Mon Feb 27 2006 - 16:06:56 CST)
- Re: question about electrostatic potential maps ivana adamovic (Tue Feb 28 2006 - 09:47:44 CST)
- Re: question about electrostatic potential maps ivana adamovic (Wed Mar 01 2006 - 09:43:15 CST)
- Re: question about electrostatic potential maps John Stone (Wed Mar 01 2006 - 16:50:00 CST)
- Re: question about electrostatic potential maps Jeffrey A Tibbitt (Thu Mar 02 2006 - 12:02:01 CST)
- Re: question about electrostatic potential maps Vlad Cojocaru (Tue Feb 28 2006 - 04:12:02 CST)
- Re: question about electrostatic potential maps John Stone (Mon Feb 27 2006 - 16:06:56 CST)
- converting pdb to xtc L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 10:17:42 CST)
- color scale data range Vlad Cojocaru (Mon Feb 27 2006 - 05:28:18 CST)
- color scale data range Vlad Cojocaru (Mon Feb 27 2006 - 05:25:43 CST)
- Warning) Unusual bond between residues 25 and 26 Nuno R. L. Ferreira (Sat Feb 25 2006 - 11:42:49 CST)
- Atomselection problem Manali Joshi (Fri Feb 24 2006 - 16:54:12 CST)
- representation using COM Anthony Cruz (Fri Feb 24 2006 - 16:53:27 CST)
- Re: Mapping electronic potential to surface Xifang Wang (Thu Feb 23 2006 - 19:42:50 CST)
- loading a trajectory using bigdcd and job launched on a PBS server Nicolas Sapay (Thu Feb 23 2006 - 15:05:09 CST)
- isplay script that displays a system in the original pbc cell snoze pa (Thu Feb 23 2006 - 13:47:52 CST)
- Tachyon and text rendering Vlad Cojocaru (Thu Feb 23 2006 - 13:08:44 CST)
- load multiple CRD trajectories into a PDB file Thereza Soares (Thu Feb 23 2006 - 11:26:14 CST)
- Moving domains in VMD Francis Reyes (Thu Feb 23 2006 - 09:08:45 CST)
- very large pdb file Jack Gundrum (Thu Feb 23 2006 - 11:09:39 CST)
- render text in VMD with Tachyon Vlad Cojocaru (Thu Feb 23 2006 - 09:07:54 CST)
- Mapping electronic potential to surface Xifang Wang (Wed Feb 22 2006 - 21:36:16 CST)
- restart simulation with NAMD lily jin (Wed Feb 22 2006 - 14:01:30 CST)
- How to display a periodic image using TCL commands? Nicolas Sapay (Wed Feb 22 2006 - 11:08:28 CST)
- VMD /w >2GB RAM on Windows XP, and Windows XP x64 64-bit version... John Stone (Wed Feb 22 2006 - 10:51:19 CST)
- RE: problem with script to get RMSD-solved Ana Celia Araujo Vila Verde (Tue Feb 21 2006 - 10:53:16 CST)
- read_next_timestep(...) Marco Kalweit (Tue Feb 21 2006 - 07:08:40 CST)
- Problem installation on RedHat Fan,Huajun (Mon Feb 20 2006 - 21:18:32 CST)
- Problem with Hg, H Younes Ansari (Sun Feb 19 2006 - 12:38:20 CST)
- Re: Problem with Hg, H John Stone (Mon Feb 20 2006 - 18:41:22 CST)
- Re: Problem with Hg, H Younes Ansari (Wed May 10 2006 - 04:09:57 CDT)
- Re: Problem with Hg, H Christian Simon (Wed May 10 2006 - 07:40:49 CDT)
- Launching Tk Console Arneh Babakhani (Wed May 10 2006 - 11:23:42 CDT)
- Re: Launching Tk Console Leonardo G. Trabuco (Wed May 10 2006 - 11:58:53 CDT)
- Re: Launching Tk Console Arneh Babakhani (Wed May 10 2006 - 19:00:57 CDT)
- Re: Problem with Hg, H Eduard Schreiner (Wed May 10 2006 - 10:41:34 CDT)
- Re: Problem with Hg, H Younes Ansari (Wed May 10 2006 - 04:09:57 CDT)
- Re: Problem with Hg, H Axel Kohlmeyer (Mon Feb 20 2006 - 19:13:49 CST)
- Re: Problem with Hg, H John Stone (Mon Feb 20 2006 - 18:41:22 CST)
- vmd 1.8.b does not start up Prashanth Athri (Thu Feb 16 2006 - 17:59:50 CST)
- RE: problem with script to get RMSD Ana Celia Araujo Vila Verde (Thu Feb 16 2006 - 15:49:23 CST)
- problem with script to get RMSD Ana Celia Araujo Vila Verde (Thu Feb 16 2006 - 13:31:28 CST)
- catdcd.LINUX lily jin (Thu Feb 16 2006 - 13:24:16 CST)
- How can i use the catdcd plugin with the VMD windows version? lily jin (Thu Feb 16 2006 - 13:19:50 CST)
- Selections in periodic boxes Ignacio Fern醤dez Galv醤 (Thu Feb 16 2006 - 05:24:07 CST)
- fortran bindings for molfile library Axel Kohlmeyer (Wed Feb 15 2006 - 09:31:54 CST)
- PDB Parser cannot interpret ^M ? Francis Reyes (Tue Feb 14 2006 - 22:53:06 CST)
- RE: PSF tools in windows and long paths Jacob P鴋lsgaard (Wed Feb 15 2006 - 02:51:06 CST)
- moving an atom in VMD lily jin (Tue Feb 14 2006 - 11:15:13 CST)
- PSF tools in windows and long paths Jacob P鴋lsgaard (Tue Feb 14 2006 - 03:47:34 CST)
- Writing a pdb file with header information Palmer, Teresa (Mon Feb 13 2006 - 16:57:04 CST)
- Free Cluster-Building Workshops - 16-17 Mar 2006, 20-21 Apr 2006 Tim Skirvin (Mon Feb 13 2006 - 13:33:09 CST)
- Loading structures into sequence alignment extension? Francis Reyes (Mon Feb 13 2006 - 11:31:40 CST)
- tcl-reading files Anna Modzelewska (Mon Feb 13 2006 - 07:35:26 CST)
- number of waters around a protein L. Michel Espinoza-Fonseca (Mon Feb 13 2006 - 06:05:23 CST)
- $64k/yr hpc post-doc@lanl Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 19:05:34 CST)
- test - 0123456789abcdefghijklnmopqrstuvwxyz Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 16:17:28 CST)
- Problem with VMD 'animate' command Chandra Ramananjara (Sun Feb 12 2006 - 10:12:36 CST)
- VMD Plugin update for Windows problem Mikolai Fajer (Sat Feb 11 2006 - 07:58:21 CST)
- RE: VMD 1.8.4 beta 11 test version available Warren DeLano (Fri Feb 10 2006 - 19:12:14 CST)
- using paratool L. Michel Espinoza-Fonseca (Fri Feb 10 2006 - 17:45:32 CST)
- VMD 1.8.4 beta 11 test version available John Stone (Fri Feb 10 2006 - 17:20:47 CST)
- water box lily jin (Fri Feb 10 2006 - 17:07:13 CST)
- AtomSel with object index (Python scripting) ziemys_at_ecr6.ohio-state.edu (Fri Feb 10 2006 - 13:04:07 CST)
- batchmode use of "labels" functions? Brian Bennion (Fri Feb 10 2006 - 11:59:32 CST)
- VTK with VMD Rahul Sampath (Thu Feb 09 2006 - 21:15:27 CST)
- uncompress files in tcl script Joseph Fernandez (Thu Feb 09 2006 - 09:55:05 CST)
- vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Tru Huynh (Tue Feb 07 2006 - 08:16:05 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy John Stone (Wed Feb 08 2006 - 17:48:25 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Dan Wright (Wed Feb 08 2006 - 22:26:53 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Axel Kohlmeyer (Thu Feb 09 2006 - 06:16:54 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy John Stone (Thu Feb 09 2006 - 09:38:08 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Bogdan Costescu (Thu Feb 09 2006 - 10:51:55 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy John Stone (Thu Feb 09 2006 - 11:08:19 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Bogdan Costescu (Thu Feb 09 2006 - 11:43:52 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy John Stone (Thu Feb 09 2006 - 13:30:59 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Pietro Amodeo (Fri Feb 10 2006 - 05:01:22 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Bogdan Costescu (Fri Feb 10 2006 - 12:05:03 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy John Stone (Fri Feb 10 2006 - 12:45:19 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy St閜hane Teletch閍 (Mon Feb 13 2006 - 04:13:25 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Sabuj Pattanayek (Thu Feb 09 2006 - 13:58:18 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy St閜hane Teletch閍 (Fri Feb 10 2006 - 08:18:21 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Marc Baaden (Tue Feb 14 2006 - 01:27:51 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Tru Huynh (Thu Feb 09 2006 - 09:13:52 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy Dan Wright (Wed Feb 08 2006 - 22:26:53 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy John Stone (Wed Feb 08 2006 - 17:48:25 CST)
- trajectory2 bizoniusz_at_o2.pl (Mon Feb 06 2006 - 14:55:20 CST)
- Tcl scripting Nuno R. L. Ferreira (Mon Feb 06 2006 - 13:13:06 CST)
- trajectory bizoniusz_at_o2.pl (Mon Feb 06 2006 - 12:02:27 CST)
- OpenGL Shading Program is not available griadi_at_utalca.cl (Fri Feb 03 2006 - 20:39:37 CST)
- Looking for x86 Mac testers... John Stone (Fri Feb 03 2006 - 19:55:57 CST)
- compose pdb Osmany Guirola Cruz (Fri Feb 03 2006 - 12:37:47 CST)
- Moving molecules with Spaceball or with a Tool Marc Baaden (Fri Feb 03 2006 - 11:50:15 CST)
- analysis script causes vmd to crash Eliud Oloo (Thu Feb 02 2006 - 19:26:35 CST)
- Problems with Spaceball 4000FLX Pietro Amodeo (Thu Feb 02 2006 - 15:04:58 CST)
- vmdtext on Mac OS X dimka (Thu Feb 02 2006 - 13:54:32 CST)
- RE: a question about dcd files Ana Celia Vila Verde (Thu Feb 02 2006 - 08:32:35 CST)
- external ??? Damien Touraine (Thu Feb 02 2006 - 09:45:11 CST)
- installing problem python 2.2.2 for ied on amd64 Florian Haberl (Thu Feb 02 2006 - 08:50:36 CST)
- RE: printing to a file from a procedure to get RMSD Ana Celia Araujo Vila Verde (Thu Feb 02 2006 - 08:35:30 CST)
- stereo with vmd Osmany Guirola Cruz (Wed Feb 01 2006 - 16:53:32 CST)
- a question about dcd files Ana Celia Vila Verde (Wed Feb 01 2006 - 13:53:39 CST)
- dublicated residue name in PDB/PSF ziemys_at_ecr6.ohio-state.edu (Wed Feb 01 2006 - 09:15:37 CST)
- printing to a file from a procedure to get RMSD Ana Celia Araujo Vila Verde (Tue Jan 31 2006 - 10:28:37 CST)
- opendx and vmd Guanglei Cui (Sat Jan 28 2006 - 21:30:52 CST)
- ntdll.dll problem when changing drawing methods Paul Van Allsburg (Mon Jan 30 2006 - 14:06:54 CST)
- vmd installation on the server andrea spitaleri (Mon Jan 30 2006 - 09:31:46 CST)