From: Molybdos Kirkimpolakis (
Date: Mon Feb 13 2012 - 15:53:15 CST

Dear VMD Masters,

I was wondering how can I get the "Timestep" of each frame of my simulation
after the files are loaded in vmd.

In addition I was also wondering how to use hbond command. When I type

set protein [atomselect top protein]

measure hbonds 3.5 30 protein

I got a long list of numbers, Can anyone explain what it means or make an
example of how to use it?

I cannot use the pulgin, because I only have access to a cluster where I
can only run commands and no a graphical version of vmd.

Thanks so much for your help!!

Molybdos Kirkimpolakis
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