VND - Visual Neuronal Dynamics

VND is a neuronal visualization program for displaying, animating, and analyzing SONATA format neural models using 3-D graphics and built-in scripting. VND supports computers running Linux, is distributed free of charge, and includes source code.
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Gallery

mousev1

Award winning image, annual NIH BRAIN Initiative "Show us your brains", Mouse V1 model with VND.

VND visualization of 300 cell model with high definition ambient occlusion effects.

Example visualization of 300 cell model connectivity using VND selection language.

Example visualization of synapse positions in single cell model.

VND visualization of Mouse V1 model. Animation of spike activity.

Screencast of VND animation of compartment timeseries data.

Breaking News

Model of Mouse V1 with a Neuropixels Probe Model of Mouse V1 with a Neuropixels Probe
Allen Institute Modeling Software Workshop, Seattle, July 13-14, 2023
Join us at the Allen Institute Modeling Software Workshop for a hands-on opportunity to learn how to use open-source software modeling tools developed in part at the Allen Institute.
Visit the workshop website

Overview

SONATA neuronal network data format (Allen Institute)
BMTK - Brain Modeling Toolkit (Allen Institute)
Mouse Primary Visual Cortex Model V1 (Allen Institute)
How to cite VND

Download

Download (all versions)
License, Copyright and Disclaimer

Documentation and Support

User and installation guides
VND Tutorial
Open for neuroscience tutorials: Tools for Modeling
BMTK Tutorial (Allen Institute)

News and Announcements

NIH Director's Blog Highlights VND
VND image wins 2nd place prize, annual NIH BRAIN initiative "Show us your brains" contest
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits, PLOS Comp. Bio.

Example VND Test Data Sets

Mouse Primary Visual Cortex V1 VND Example

Development

VND Source Code Access (VMD CVS repo)