VMD-L Mailing List

From: syma khalid (syma_at_biop.ox.ac.uk)
Date: Thu Jan 27 2005 - 11:27:03 CST

Hi John,

Yes I did follow those steps.

For the lipid_surface.tcl script, I had to change the segname bit to
resname as I don't segnames in my pdb.

Then I follow the steps until and get this error on the penultimate
step:

Bad line:
Bad line:
Can't read "triangles": no such variable.

I haven't looked at the other script in as much detail yet, so I will
get back to you on that one.

Thank you,

-Syma

-----Original Message-----
From: John Stone [mailto:johns_at_ks.uiuc.edu]
Sent: 27 January 2005 17:17
To: syma khalid
Cc: vmd-l_at_ks.uiuc.edu
Subject: Re: vmd-l: vmd and hull

Syma,
  What problems are you having with the delaunay scripts?
I assume you tried the steps listed on the script page below?:
http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/delaunay_tria
ngulate/

  John

On Thu, Jan 27, 2005 at 12:36:09PM -0000, syma khalid wrote:
> Hi,
>
> I was just wondering if anyone has successfully used hull with vmd? I
am
> having problems with both the lipid surface and the 3d surface
scripts.
>
> -Syma
>
>
***********************************************************************
>
> Dr Syma Khalid
> Lab. of Molecular Biophysics,
> Department of Biochemistry,
> University of Oxford
> South Parks Road,
> Oxford
> OX1 3QU
> U.K.
> Email syma_at_biop.ox.ac.uk
>
>
> ***************************************************
> 

--
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078
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