VMD-L Mailing List

From: Bharat Kumar (bharat.stanam_at_gmail.com)
Date: Mon Dec 20 2010 - 21:29:48 CST

Hi,

I want to replace a wildtype protein in an embedded POPC membrane with a
mutant one. I loaded the wild-type, embedded in membrane, and the mutant
PDBs. I used the RMSD calculator to calculate RMSD and then aligned the
backbone CA atoms of mutatnt with that of wildtype. Now I want to 1) save
the coordinates of the mutant and the membrane without wildtype as a single
PDB file and 2) To generate PSF for this PDB file.

Can you please give me some directions in achieving first the first job and
then the second task?

sincerely,
Bharat.