VMD-L Mailing List

From: Raman Preet Singh (ramanpreetsingh_at_hotmail.com)
Date: Tue Oct 04 2022 - 01:48:28 CDT

Thanks for the info.

Regards,
Raman

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________________________________
From: Josh Vermaas <vermaasj_at_msu.edu>
Sent: Tuesday, October 4, 2022 1:06:53 AM
To: Raman Preet Singh <ramanpreetsingh_at_hotmail.com>; vmd-l_at_ks.uiuc.edu <vmd-l_at_ks.uiuc.edu>
Subject: Re: vmd-l: Overriding default bond heuristics

Load the PSF first. The heuristics only are invoked if the first file to be loaded doesn't have bond information in it.

-Josh

On 10/3/22 1:50 PM, Raman Preet Singh wrote:
Dear VMD users and developers,

When I view molecules in VMD, some of the bonds appear unrealistic. I understand that's because of the distance-based heuristics of VMD. Is there a way to override this so that only the bonds listed in psf file are shown?

Thanks!
RPS 

--
Josh Vermaas
vermaasj_at_msu.edu<mailto:vermaasj_at_msu.edu>
Assistant Professor, Plant Research Laboratory and Biochemistry and Molecular Biology
Michigan State University
vermaaslab.github.io