VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jul 26 2007 - 11:33:52 CDT

Hi,

On Thu, Jul 26, 2007 at 11:45:13AM +0200, sfrickenhaus wrote:
> Hello,
>
> I have problems with invisible Tube/Trace/Cartoon graphics in VMD 1.8.6
> (win32) when my peptide is made cyclic by patching with the PRES LIG1.
> Any hint for that?

Since Peter answered the rest of your questions I'll just address
this one. The released versions of VMD don't like cyclic structures,
but I've got a developmental version you can try out which should accept
them and draw them nicely. Let me know if you want to try it out.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078