From: Peter Freddolino (
Date: Wed Apr 19 2006 - 12:02:46 CDT

Hi Andrea,
you can do this using the "Multiple Alignment" plugin under the Analysis

andrea spitaleri wrote:

> Hi all,
> in vmd is it possible to perform a sequence alignment followed by a
> structural alignment as pymol does when *the number of residues are
> different*?
> Thanks
> Regards
> andrea