From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Feb 08 2006 - 17:48:25 CST

Hi,
  On our RHEL4 64-bit build box, I don't get a libstdc++5 dependency...
Any thoughts on why Centos is different?:

% ldd vmd_LINUXAMD64
        libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000003384e00000)
        libGLU.so.1 => /usr/X11R6/lib64/libGLU.so.1 (0x0000003384c00000)
        libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000003a05e00000)
        libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000003a06400000)
        libdl.so.2 => /lib64/libdl.so.2 (0x0000003a05c00000)
        libutil.so.1 => /lib64/libutil.so.1 (0x0000003a0a300000)
        libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003a08400000)
        libm.so.6 => /lib64/tls/libm.so.6 (0x0000003a05a00000)
        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003a08600000)
        libc.so.6 => /lib64/tls/libc.so.6 (0x0000003a05700000)
        libGLcore.so.1 => /usr/lib64/libGLcore.so.1 (0x0000003384300000)
        libnvidia-tls.so.1 => /usr/lib64/tls/libnvidia-tls.so.1 (0x0000003384100000)
        libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000003a06000000)
        /lib64/ld-linux-x86-64.so.2 (0x0000003a04a00000)

  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Feb 07, 2006 at 03:16:05PM +0100, Tru Huynh wrote:
> Hello,
>
> I am trying vmd-1.8.4b10 on CentOS-3 x86_64 and ran into a library issue:
>
> [tru_at_sillage bin]$ ldd /Bis/shared/centos-3_x86_64/vmd-1.8.4b10/vmd_LINUXAMD64
> libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000002a9568e000)
> libGLU.so.1 => /usr/X11R6/lib64/libGLU.so.1 (0x0000002a95841000)
> libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000002a959c5000)
> libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000002a95bb8000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000002a95ccc000)
> libutil.so.1 => /lib64/libutil.so.1 (0x0000002a95dd0000)
> libstdc++.so.6 => not found
> libm.so.6 => /lib64/tls/libm.so.6 (0x0000002a95ed3000)
> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000002a9605c000)
> libc.so.6 => /lib64/tls/libc.so.6 (0x0000002a96167000)
> libGLcore.so.1 => /usr/lib64/libGLcore.so.1 (0x0000002a963ac000)
> libnvidia-tls.so.1 => /usr/lib64/tls/libnvidia-tls.so.1 (0x0000002a96c2d000)
> libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000002a96d2e000)
> libstdc++.so.5 => /usr/lib64/libstdc++.so.5 (0x0000002a96e3f000)
> /lib64/ld-linux-x86-64.so.2 => /lib64/ld-linux-x86-64.so.2 (0x0000002a95556000)
>
> The current version does not have this issue:
> [tru_at_sillage bin]$ ldd /Bis/shared/centos-3_x86_64/vmd-1.8.3/vmd_LINUXAMD64
> libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000002a9568e000)
> libGLU.so.1 => /usr/X11R6/lib64/libGLU.so.1 (0x0000002a95841000)
> libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000002a959c5000)
> libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000002a95bb8000)
> libdl.so.2 => /lib64/libdl.so.2 (0x0000002a95ccc000)
> libutil.so.1 => /lib64/libutil.so.1 (0x0000002a95dd0000)
> libstdc++.so.5 => /usr/lib64/libstdc++.so.5 (0x0000002a95ed3000)
> libm.so.6 => /lib64/tls/libm.so.6 (0x0000002a960a7000)
> libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000002a96230000)
> libc.so.6 => /lib64/tls/libc.so.6 (0x0000002a9633b000)
> libGLcore.so.1 => /usr/lib64/libGLcore.so.1 (0x0000002a96580000)
> libnvidia-tls.so.1 => /usr/lib64/tls/libnvidia-tls.so.1 (0x0000002a96e01000)
> libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000002a96f02000)
>
> -> libstdc++.so.5 instead of libstdc++.so.6
>
> The linux 32 bits version is also linked against libstdc++.so.5:
> [tru_at_sillage bin]$ ldd /Bis/shared/centos-3/vmd-1.8.4b10/vmd_LINUX
> libGL.so.1 => /usr/lib/libGL.so.1 (0x40037000)
> libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x400bb000)
> libpthread.so.0 => /lib/tls/libpthread.so.0 (0x40137000)
> libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x40147000)
> libXft.so.2 => /usr/X11R6/lib/libXft.so.2 (0x40226000)
> libdl.so.2 => /lib/libdl.so.2 (0x40238000)
> libutil.so.1 => /lib/libutil.so.1 (0x4023b000)
> libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x4023f000)
> libm.so.6 => /lib/tls/libm.so.6 (0x402f2000)
> libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x40314000)
> libc.so.6 => /lib/tls/libc.so.6 (0x4031d000)
> libGLcore.so.1 => /usr/lib/libGLcore.so.1 (0x40456000)
> libnvidia-tls.so.1 => /usr/lib/tls/libnvidia-tls.so.1 (0x40c14000)
> libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x40c17000)
> /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000)
> libXrender.so.1 => /usr/X11R6/lib/libXrender.so.1 (0x40c25000)
> libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0x40c2d000)
> libexpat.so.0 => /usr/lib/libexpat.so.0 (0x40c54000)
> libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0x40c74000)
> libz.so.1 => /usr/lib/libz.so.1 (0x40cc5000)
>
> Cheers,
>
> Tru
> --
> Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
> mailto:tru_at_pasteur.fr | tel/fax +33 1 45 68 87 37/19
> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078