From: Tru Huynh (tru_at_pasteur.fr)
Date: Tue Feb 07 2006 - 08:16:05 CST

Hello,

I am trying vmd-1.8.4b10 on CentOS-3 x86_64 and ran into a library issue:

[tru_at_sillage bin]$ ldd /Bis/shared/centos-3_x86_64/vmd-1.8.4b10/vmd_LINUXAMD64
        libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000002a9568e000)
        libGLU.so.1 => /usr/X11R6/lib64/libGLU.so.1 (0x0000002a95841000)
        libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000002a959c5000)
        libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000002a95bb8000)
        libdl.so.2 => /lib64/libdl.so.2 (0x0000002a95ccc000)
        libutil.so.1 => /lib64/libutil.so.1 (0x0000002a95dd0000)
        libstdc++.so.6 => not found
        libm.so.6 => /lib64/tls/libm.so.6 (0x0000002a95ed3000)
        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000002a9605c000)
        libc.so.6 => /lib64/tls/libc.so.6 (0x0000002a96167000)
        libGLcore.so.1 => /usr/lib64/libGLcore.so.1 (0x0000002a963ac000)
        libnvidia-tls.so.1 => /usr/lib64/tls/libnvidia-tls.so.1 (0x0000002a96c2d000)
        libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000002a96d2e000)
        libstdc++.so.5 => /usr/lib64/libstdc++.so.5 (0x0000002a96e3f000)
        /lib64/ld-linux-x86-64.so.2 => /lib64/ld-linux-x86-64.so.2 (0x0000002a95556000)

The current version does not have this issue:
[tru_at_sillage bin]$ ldd /Bis/shared/centos-3_x86_64/vmd-1.8.3/vmd_LINUXAMD64
        libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000002a9568e000)
        libGLU.so.1 => /usr/X11R6/lib64/libGLU.so.1 (0x0000002a95841000)
        libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x0000002a959c5000)
        libpthread.so.0 => /lib64/tls/libpthread.so.0 (0x0000002a95bb8000)
        libdl.so.2 => /lib64/libdl.so.2 (0x0000002a95ccc000)
        libutil.so.1 => /lib64/libutil.so.1 (0x0000002a95dd0000)
        libstdc++.so.5 => /usr/lib64/libstdc++.so.5 (0x0000002a95ed3000)
        libm.so.6 => /lib64/tls/libm.so.6 (0x0000002a960a7000)
        libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000002a96230000)
        libc.so.6 => /lib64/tls/libc.so.6 (0x0000002a9633b000)
        libGLcore.so.1 => /usr/lib64/libGLcore.so.1 (0x0000002a96580000)
        libnvidia-tls.so.1 => /usr/lib64/tls/libnvidia-tls.so.1 (0x0000002a96e01000)
        libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x0000002a96f02000)

-> libstdc++.so.5 instead of libstdc++.so.6

The linux 32 bits version is also linked against libstdc++.so.5:
[tru_at_sillage bin]$ ldd /Bis/shared/centos-3/vmd-1.8.4b10/vmd_LINUX
        libGL.so.1 => /usr/lib/libGL.so.1 (0x40037000)
        libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x400bb000)
        libpthread.so.0 => /lib/tls/libpthread.so.0 (0x40137000)
        libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x40147000)
        libXft.so.2 => /usr/X11R6/lib/libXft.so.2 (0x40226000)
        libdl.so.2 => /lib/libdl.so.2 (0x40238000)
        libutil.so.1 => /lib/libutil.so.1 (0x4023b000)
        libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x4023f000)
        libm.so.6 => /lib/tls/libm.so.6 (0x402f2000)
        libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x40314000)
        libc.so.6 => /lib/tls/libc.so.6 (0x4031d000)
        libGLcore.so.1 => /usr/lib/libGLcore.so.1 (0x40456000)
        libnvidia-tls.so.1 => /usr/lib/tls/libnvidia-tls.so.1 (0x40c14000)
        libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x40c17000)
        /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000)
        libXrender.so.1 => /usr/X11R6/lib/libXrender.so.1 (0x40c25000)
        libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0x40c2d000)
        libexpat.so.0 => /usr/lib/libexpat.so.0 (0x40c54000)
        libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0x40c74000)
        libz.so.1 => /usr/lib/libz.so.1 (0x40cc5000)

Cheers,

Tru

-- 
Dr Tru Huynh          | http://www.pasteur.fr/recherche/unites/Binfs/
mailto:tru_at_pasteur.fr | tel/fax +33 1 45 68 87 37/19
Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France