VMD-L Mailing List

From: Hoang, Oanh Tu (o.hoang_at_tu-berlin.de)
Date: Fri May 05 2023 - 05:41:15 CDT

Hello,

I am trying to visualize my .nc file in cartoon representation, but it looks more like ribbon and I get this error

File /tmp/fileZy8xQn has too many atoms in residue LBV 6
Error reading PDB file /tmp/fileZy8xQn
ERROR) Unable to find Stride output file: /tmp/fileg0vpFq
ERROR) Stride::read_stride_record: unable to read output file from Stride
ERROR) Call to Stride program failed.

I read that it could be due to the difference in atom names between amber and vmd, but I still quite don't understand how I could solve that problem. Does anyone know what I could do ?

Best,
Hoang