VMD-L Mailing List

From: A D (boltzmanndist_at_yahoo.com)
Date: Mon Oct 05 2009 - 18:20:15 CDT

Hello VMD Users,
I had a simulation system where I had a membrane protein at the center of a bilayer. However, although I did "wrapall on", it diffused along the membrane (x-y plane) during my 30ns simulation. I wonder how it would be possible to move it back to the center of my membrane using VMD. Any suggestions regarding NAMD coding about how to make the protein stay in the center of my membrane would also be very helpful.
Thanks a lot!!!
Seth

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