VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jun 13 2006 - 11:47:30 CDT

Hi,
  At present the only documentation for the PMEpot plugin is here:
http://www.ks.uiuc.edu/Research/vmd/plugins/pmepot/

The PMEpot plugin was written by Jim Phillips (the lead NAMD developer)
and uses the same parameters that you would use if you were specifying
this unit cell for NAMD. I believe the origin is the "ox oy oz" specified
in the -cell parameter when run in the command line version...

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Jun 12, 2006 at 12:36:34PM +0100, Zara Sands wrote:
> Does anyone know where I can find documentation on the use of the PMEpot
> plugin (as I am not quite sure what the difference is between the length
> and the vector variables, also I think that the origin values correspond
> to the centre of the unit box in question but I am not certain).
>
> Any help greatly appreciated,
>
> Zara.
>
> --
> ********************************************************************************
>
> Dr Zara A. Sands
> Department of Biochemistry
> University of Oxford
> Oxford
> OX1 3QU
> U.K.
>
> E: zara.sands_at_bioch.ox.ac.uk
> T: 01865 275380
> F: 01865 275182
> W: http://sbcb.bioch.ox.ac.uk/sands.php
>
> ********************************************************************************
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078