VMD-L Mailing List

From: Rabab Toubar (rtoubar_at_yahoo.com)
Date: Thu Jun 24 2010 - 12:27:20 CDT

I have a protein with disulfide bonds that I want to reduce. When I was using VMD 1.8.6, I used the add/remove bonds to delete the disulfide, save coordinates and then psf generation and it was OK. Now I am using vmd 1.8.7 with the same molecule when I try to load the saved reduced molecule, I still can see the disulfides.

I also tried to use the molefacture, but I get C-S-H-S-H bond instead of the expected two C-S-H pattern

Any suggestions what could be wrong?

Thanks
Rabab Toubar