From: John Stone (
Date: Thu Nov 11 2010 - 11:07:55 CST

  I suggest that you work through the VMD tutorial and read the
VMD User's Guide to become more familiar with the program.
See the "HBonds" representation:

Also, it is unnecessary to re-send your VMD-L postings unless
more than a week has passed without an answer to your question.

Most of the time if people do not answer in a day or two, the question
was either something very basic that is answered adequately by the existing
VMD documentation, or the question didn't provide enough detail for
others to be able to provide assistance.


On Thu, Nov 11, 2010 at 11:53:57AM -0500, wrote:
> hello everybody,
> can anybody tell me how to calculate and visualize Hbonds?
> thanks,
> yaima
> ************************************
> Center of Molecular Immunology (CIM)
> Tumour Immunology Direction
> Nanobiology Department
> 216 St. & 15th Ave, Siboney, Playa
> P.O.Box 16040. Havana, Cuba
> Phone: (537) 214-3178
> Yaima Cires Pérez, BSc
> ************************************
> ----------------------------------------------------------------
> This message was sent using IMP, the Internet Messaging Program.
> --
> Este mensaje le ha llegado mediante el servicio de correo electronico que
> ofrece Infomed para respaldar el cumplimiento de las misiones del Sistema
> Nacional de Salud. La persona que envia este correo asume el compromiso de
> usar el servicio a tales fines y cumplir con las regulaciones establecidas
> Infomed:

NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email:                 Phone: 217-244-3349
  WWW:      Fax: 217-244-6078