VMD-L Mailing List

From: S.K. Ghosh (skg30_at_cam.ac.uk)
Date: Mon Jul 07 2008 - 16:18:17 CDT

Hi VMD users,

I would like to pull the 3-4 loop (loop between 3rd and 4th betasheet) of
my protein by some distance by applying the force on an atom in VMD and
sending the force from VMD to NAMD (using IMD on). I am curious to find out
what is the magnitude of the force that I am applying. Could someone let me
know whether I can check that in VMD?

Thanks,
Sourav