VMD-L Mailing List

From: Revthi Sanker (revthi.sanker1990_at_gmail.com)
Date: Wed Oct 30 2013 - 03:44:54 CDT

Dear all,
I am working on a channel protein, which is inhibited due to the physical
blocking of the channel by an inhibitor. I would like to calculate the
%volume of the channel occupied by the inhibitor i.e volume fraction of the
inhibitor. I found several online servers for volume calculation but all of
them do not provide the volume of the whole channel instead divide it into
discontinuous sub-pockets . Is there any analysis tool/plugin in VMD that
will help me in this analysis?
Kindly provide your valuable suggestions.

Thank you in advance.

Revathi.S
M.S. Research Scholar
Indian Institute Of Technology, Madras
India
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International Conference on Bimolecular Simulations and Dynamics
*Official website:*
http://cmsrv.iitm.ac.in/icbsd2013/
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