VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Sun Jan 20 2008 - 22:55:40 CST
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- In reply to: ABEL Stephane 175950: "problem with time line plugin in VMD"
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Hi,
I'm forwarding your note to Barry, the author of the Timeline plugin,
in hopes that he can either give you a workaround, or suggest how to
overcome this using his newest versions.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Fri, Jan 18, 2008 at 10:36:30AM +0100, ABEL Stephane 175950 wrote:
> Hi VMD users
>
> I use VMD (1.8.6) for windows and I have a problem with the Timeline plugin and STRIDE. When I load a pdb file with a 100 or more configs of a protein and compute the secondary structure with Timeline plug it works well. But when i want to save the file in ASCII with the command "Write the data file" i found some error. Indeed in dat file the fourth column of some config where is plotted the secondary structure code is not letter but number (see below). These errors are randomly placed when save the datas several times so i think that my pdb is reason of this error.
>
> Error
>
> 100 X CA 128 H
> 101 X CA 128 H
> 102 X CA 128 H
> 103 X CA 128 C
> 104 X CA 128 C
> 105 X CA 128 C
> 2 X CA 129 1.96399998665
> 3 X CA 129 4.87200021744
> 4 X CA 129 8.35000038147
>
> Do you know this problem ?
>
> Thank you for your help
>
> Stefane
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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