VMD-L Mailing List

From: satya kumar (mail2mvskumar_at_gmail.com)
Date: Fri Jul 06 2012 - 18:34:20 CDT

Hello VMD users,

I am working on Molecular Dynamics simulations. I have a file sample.gro
that has a box consisting of DNA molecule+water molecules in my system. I
have to choose all the water molecules that are close to the dna (with some
cut off distance). Is there a way that VMD selection can handle it?

Request you to guide me. Thanks for your time.

With Regards,
Satya.