From: Daniel STERBULEAC (
Date: Mon Oct 19 2020 - 15:33:46 CDT


I am having a hard time deciphering the script behind VMD's RMSD visualizer
tool ALIGN button. I tried using the scripts found at
but they do seem to perform different calculations.

I would be grateful if anyone could help me with the script or other advice.

All the best,


Daniel Sterbuleac, PhD
Assistant Professor, Stefan cel Mare University of Suceava, Romania
Str. Universitatii, 13, Suceava