VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Feb 23 2006 - 13:50:49 CST

Take a look at the PBCTools and PBCWrap scripts, they should help you
with this:
  http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/pbctools/
  http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/pbcwrap/

  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Feb 23, 2006 at 02:47:52PM -0500, snoze pa wrote:
> Dear VMD users,
> I am new in this mailing list and i have few questions. I am doing namd
> simulation and find that my water box size is increasing in one direction
> while it is shrinking in other direction. Mark suggest me to check it with
> vmd if anyone has written a display script that displays a system in the
> original pbc cell.
> thanks in advance
> snoze 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078