From: L. Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Mon Sep 10 2007 - 10:43:56 CDT

>
> Dear All,
>

Dear Yu

>
>
> One question is: is the STRIDE algorithm used in NAMD?
>

No, NAMD doesn't use STRIDE at all. STRIDE is a post-processing
program to calculate the secondary structure of a given
protein/peptide. STRIDE is included in VMD, where you can visualize
and analyze your trajectories (including the secondary structure
assignment).

>
>
> Regards,
>

... And finally, as it has been recommended by Axel and others, next
time try to post your question(s) in the right list (in this case, the
VMD one) so your chances of getting a response are increased :).

Cheers,
Michel

>
>
> YU Liu