VMD-L Mailing List

From: Jorge Hernandez Fernandez (jorgehf_at_cbi.cnptia.embrapa.br)
Date: Mon Feb 11 2008 - 13:02:59 CST

Dear colleagues:
       We in our Lab. are working on big integrin domains movements during
dynamics. As part of the analyzed literature we take the work
"HOW THE HEADPIECE HINGE ANGLE IS OPENED: NEW INSIGHTS INTO THE DYNAMICS OF
INTEGRIN ACTIVATION, J Cell Biol. 2006; 175(2): 349"; and start to work with
the plug-in Hingefind (tcl) inside VMD 1.8.5 (Win-XP). The central point in
this mail is to obtain more information about the way to obtain the calculated
hinge for each point of MD trajectory to a pretty graphic as in fig 3 on that
paper.
      Important to say that I'm not an experienced tcl user, so any help in
this task is very welcome......
Looking forward to take good news form the community,

                                                  Jorge H.F.
                                                                             
                                         

-- 
== Dr. JORGE HERNANDEZ FERNANDEZ ==
====== Center of Applied Toxinology ======
===== CAT-CEPID - Instituto Butantan =====
======  Ave Vital Brasil, 1500 S.P. ======
Tel: 055 11 3726 7222 r.2042 Fax: 055 11 3721 6605
==== S.B.I.- EMBRAPA - BioInformatica ====
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Tel:  055 19-37895828  Cell: 055 11-97126104
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