VMD-L Mailing List

From: Ashar Malik (asharjm_at_gmail.com)
Date: Tue Apr 28 2020 - 15:03:51 CDT

If the purpose is to unwrap the trajectory - you can use trjconv within
gromacs.

On Wed, Apr 29, 2020 at 3:40 AM Ivan Gregoretti <ivangreg_at_gmail.com> wrote:

> Hi Alexander.
>
> As we wait for someone with experience to contribute with a solution
> for you, let me give you a pointer for you to start digging:
>
> If you do a Google search on "ld: symbol(s) not found for architecture
> x86_64" (with quotes) it will lead you to a stackoverflow.com post.
>
> The post is titled "g++ ld: symbol(s) not found for architecture
> x86_64" and I think that it might be useful for you.
>
> Ivan
>
>
> On Tue, Apr 28, 2020 at 2:09 PM Alexander Adams <xadams_at_umich.edu> wrote:
> >
> > Dear VMD community,
> >
> > I am working with gromacs trajectory files that show bonds stretched
> across the entire image due to PBCs. Previous vmd-l posts led me to the
> qwrap function repository, but I've had some trouble with installation.
> I've attached the errors I receive: error 1 when running with gcc and error
> 2 when running with clang. I haven't had much luck searching online for
> solutions to these errors and would appreciate any guidance that can be
> offered. I did see in a previous post that the package requires tcl devel,
> but I can neither find tcl-devel through homebrew or an internet search.
> Thanks in advance!
> >
> > Alex Adams
> > --
> > University of Michigan, Ann Arbor
> > Ph.D. Candidate - Mayes Lab
> > College of Engineering - Chemical Engineering
>
> 

-- 
Best,
/A