VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Oct 22 2004 - 10:47:36 CDT
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- In reply to: mbb: "trajectory file with xyz"
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Hi,
VMD will read normal XYZ files and multi-frame XYZ files containing
trajectory data. The atom count in each frame must remain constant, that's
the only limitation. Here's a description of the VMD XYZ plugin:
http://www.ks.uiuc.edu/Research/vmd/plugins/molfile/xyzplugin.html
John Stone
vmd_at_ks.uiuc.edu
On Wed, Oct 20, 2004 at 11:56:26PM +0300, mbb wrote:
> hi everyone,
> i want to visualize a molecular dynamics file with vmd. The problem is
> that I use a helium cluster not a protein.I actually did molecular
> dynamics and have x y z coordinates at given times. Can it is
> possible to visualize that? I need to convert my output file to an
> input file that vmd understand. I just need the format of trajectory
> file if i am not mistaken. Could you pls send me a trajectory file
> with xyz format so i can handle with mine.
>
> Thanks in advance...
> --
> mbb
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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