From: Josh Vermaas (
Date: Sun Aug 03 2014 - 07:25:55 CDT

Use a surface representation (Quicksurf, MSMS, Surf), use one of the
transparent representations, and color based on colorid, and use one of
the blues. Its up to you to see which permutation of these elements you
-Josh Vermaas

On 08/03/2014 03:06 AM, sunyeping wrote:
> Dear all,
> Does some one know how to show water box as real water body? I mean
> make the water box look like real continous blue water, as the wate
> sphere around the ubiquitin
> <> molecule
> in cover page of the namd-turorial. Thank you!
> Yeping Sun