VMD-L Mailing List

From: Luis Gracia (lgraval_at_gmail.com)
Date: Thu Feb 10 2005 - 22:35:16 CST

Hi!

you have to find what both proteins have in common to create the right
selection, like:
resid
residue
helix
etc....

look the vmd manual for all the selection options. If the two proteins
have different sequence in the region you want to align try using 'and
backbone' or 'and trace'

Luis Gracia

matteo.pennestri_at_virgilio.it wrote:

>HI VMD user, I have some problem with the alignment,
>
>I am not able to align to protein which have not the same number of residue.
>
>For exaple I want to align the first (with only 25 aminoacids) and the secondo
>with 150 aminoacids. But I want to align only 25 of the first with 25 of
>the second.
>
>I hope someone could help me
>
>best wishes
>
>Matteo
>
>
>
>