VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Mar 27 2006 - 00:00:48 CST

Hi,
  Another way to do this would be to use the VMD dxplugin in your own
program (until we have a volumetric query interface built-into VMD itself)..

  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Mar 23, 2006 at 09:22:21PM -0500, Axel Kohlmeyer wrote:
> On Thu, 23 Mar 2006, L. Michel Espinoza-Fonseca wrote:
> michel,
>
> the primary tool to do this would be OpenDX (http://www.opendx.org/)
> from which APBS took the data format. it is a very powerful tool,
> but has a pretty steep learning curve...
>
> axel.
>
> ME> Hi all,
> ME>
> ME> I'm interested in extracting values from a dx-formatted file (charge
> ME> density) created by APBS. I would like to know if any of you know how
> ME> to do it (maybe with VMD).
> ME>
> ME> Thanks a lot!
> ME> Michel
> ME>
>
> --
> =======================================================================
> Axel Kohlmeyer akohlmey_at_cmm.chem.upenn.edu http://www.cmm.upenn.edu
> Center for Molecular Modeling -- University of Pennsylvania
> Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
> tel: 1-215-898-1582, fax: 1-215-573-6233, office-tel: 1-215-898-5425
> =======================================================================
> If you make something idiot-proof, the universe creates a better idiot. 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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