VMD-L Mailing List

From: Adrian Koh (kohsj_at_ihpc.a-star.edu.sg)
Date: Mon Jul 31 2006 - 23:18:19 CDT

Hi,

How do I download the color scale bar plugin? There didn't seemed to
contain any links or automatic download features in the webpage :).

Thanks.

Adrian.

Peter Freddolino wrote:
> Hi Adrian,
> a version of "Pos" coloring that behaves as you have described is
> currently in the planning stages and should be included with a future
> release, but isn't currently available. If you'd like to have this
> coloring now, you should probably figure out what you want your
> coloring function to be and map it to the beta field (let me know if
> this doesn't make sense).
>
> As far as color bands, please check out the color scale bar plugin
> (http://www.ks.uiuc.edu/Research/vmd/plugins/colorscalebar/) and
> remember that you can tweak the color scale data range under the
> Trajectory tab of the graphical reps menu.
>
> Best,
> Peter
>
> Adrian Koh wrote:
>> Hi,
>>
>> Would it be possible to twitch the definition of existing coloring
>> methods? For instance, the "Pos" is based on the distance of each
>> atom to the center of the molecule. Say, if I have a molecular
>> structure that takes on a cylindrical shape, could I define an
>> alternative "Pos" based on the distance of each atom to the central
>> axis instead?
>>
>> Also, would it be possible to display a legend for the color bands
>> used for "Pos", so that one could know the specific magnitude of the
>> distance the color represents?
>>
>> Thank you very much.
>>
>>
>> Best Regards,
>> Adrian.
>>
>>
>> 

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