VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jan 10 2011 - 14:28:55 CST

Hi,
  VMD doesn't currently allow time-varying volumetric models to be
loaded in the same way that you can load a trajectory. That said,
if you're willing to load each volumetric map in a separate molecule,
you can use the "multiple molecule animation" plugin in the
Extensions->Visualization menu to accomplish the same thing.
Let us know if you need more assistance with this.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Jan 10, 2011 at 11:50:46AM +0100, Fahimeh Baftizadeh wrote:
> Hello
>
> I want to generate a volumetric file format which can be read by VMD, In
> fact I have some fixed voxel and their intensity is changing with time.
> for a single fram I could generate a pdb file and simply plug it to vmd.
> and then I could look at the intensity of that fram using VOLMAP tool
> inside VMD. but for generating a trajectory of intensity, how should be
> the format. I already tried to put keywork MODEL and ENDMDL like a normal
> trajectory with a pdb fromat but it doesn't work.
> Can you help me?! 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078