VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 19 2007 - 14:09:30 CST
- Next message: Lixia Jin Day: "Re: add Mg2+"
- Previous message: John Stone: "Re: display bonds"
- In reply to: Lixia Jin Day: "add Mg2+"
- Next in thread: Lixia Jin Day: "Re: add Mg2+"
- Reply: Lixia Jin Day: "Re: add Mg2+"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
At present you could either edit the autoionize.tcl script to
use other ion types, or use one of the other ion placement tools like
cionize to do this. If you need help, let us know. We'll be
changing the ion placement plugins in VMD to be much more flexible
as time goes on...
Cheers,
John
On Thu, Dec 13, 2007 at 10:19:06AM -0700, Lixia Jin Day wrote:
> I used autoionize to add NA+ and CL- in the solvent by using plugin
> autoionize before. Now I want to add mg2+ ions instead of NA+. How can I do
> this? Thanks!
>
> Lixia
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
- Next message: Lixia Jin Day: "Re: add Mg2+"
- Previous message: John Stone: "Re: display bonds"
- In reply to: Lixia Jin Day: "add Mg2+"
- Next in thread: Lixia Jin Day: "Re: add Mg2+"
- Reply: Lixia Jin Day: "Re: add Mg2+"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]