From: Lixia Jin Day (ljin12_at_asu.edu)
Date: Wed Dec 19 2007 - 15:27:04 CST

John,
Thank you. I searched the folder and the web, where can I find
autoionize.tcl or cionize?

Lixia

On Dec 19, 2007 1:09 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

>
> Hi,
> At present you could either edit the autoionize.tcl script to
> use other ion types, or use one of the other ion placement tools like
> cionize to do this. If you need help, let us know. We'll be
> changing the ion placement plugins in VMD to be much more flexible
> as time goes on...
>
> Cheers,
> John
>
> On Thu, Dec 13, 2007 at 10:19:06AM -0700, Lixia Jin Day wrote:
> > I used autoionize to add NA+ and CL- in the solvent by using plugin
> > autoionize before. Now I want to add mg2+ ions instead of NA+. How can I
> do
> > this? Thanks!
> >
> > Lixia
>
> --
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> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>