VMD-L Mailing List

From: Bhargava (bhargava1_at_gmail.com)
Date: Mon Jun 23 2008 - 09:14:05 CDT

Hi Sourav,

> 1. I have ticked Waterbox Only and put in the Box Size Min and Max values. Does Box Padding values play any role here? Is there a diff in density of water filled in first with that padded in?

Why don't you try and see for yourself?

> 2. What's the density of water created by solvate plugin?

Density can be calculated as the mass/volume.

>
> 3. What does SegmentId prefix and Boundary stand for?

     cheers,
     Bhargava.