From: Goutham (gouthambs_at_gmail.com)
Date: Fri Mar 06 2009 - 08:38:25 CST

Thanks Ramya. Think this should help.

On Fri, Mar 6, 2009 at 12:06 AM, Ramya Gamini <ramyabhargavi_at_gmail.com>wrote:

>
>
> hi!
>> have a look into this tutorial. There are scripts meant for
>> aligning/orienting the protein and other relevant scripts (eg: removing
>> unwanted waters in the membrane etc)
>> http://www.ks.uiuc.edu/Training/Tutorials/#memtut
>> best
>> ramya
>>
>> On Fri, Mar 6, 2009 at 12:46 AM, Goutham <gouthambs_at_gmail.com> wrote:
>>
>>> Hey All,
>>> I want to put a membrane protein into a membrane bi-layer. I know a way
>>> to create the bi-layer. I am looking for any scripts that can be used to
>>> align the protein in the membrane automatically. Does any one have any
>>> scripts for doing this? I know of scripts that can be used to align
>>> manually. I am wondering if it is possible to do them automatically.
>>>
>>> Thanks
>>> Goutham
>>>
>>
>>
>