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From: Irene Newhouse (einew_at_hotmail.com)
Date: Thu Apr 10 2008 - 15:15:36 CDT

Using the sample config file at http://www.ks.uiuc.edu/Research/namd/2.6/ug/node42.html I've been able to compute interaction energies
for a trajectory in batch mode. I'd like to do the analogous thing for dihedral energies of certain parts of my structure, but I'm not sure how to modify the sample config file appropriately - what do I use in place of the pairIneraction lines? I don't want to call the namdenergy plugin through VMD because my trajectories are too long to load into VMD - not enough memory per node.
 
Thanks!
Irene Newhouse
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