VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Dec 09 2010 - 16:25:47 CST

Hi,
  Please see the VMD tutorials and in particular the atom selection
commands, for "$sel move" and related operations. You can save out
an atom selection (or whole molecule) to a new file quite easily using
the "$sel writeXXX" type commands.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Dec 08, 2010 at 04:18:41PM +1100, Sweta Iyer wrote:
> Hi,
>
> I am trying to introduce different interfaces of the same protein with
> another protein to see if there is any specific binding. It is the
> transmembrane region of a full protein, which is a helix. I want to rotate
> it by 120 degrees, 3 times, so that all residues in one turn of the helix
> are covered in 360 degrees.
>
> How can I do this, along just one axis and then save the new coordinates?
> Is thee any script to do this?
>
>
>
>
>
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-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
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