From: subrata paul (
Date: Fri Oct 14 2011 - 04:11:46 CDT

Dear Sir
I am a student of phd and new in VMD.When I went through the VMD mailing
I am using amber10. I loaded my trejectory and try to calculate but I could
not.I think my command line is wrong.

I want to calculate water-water hbond.
measure hbonds 3.5 30 -sel1 [atomselect top "water"] -sel2 [atomselect top
Is this correct?
How to finde hbond/molecule
Can you help me, giving me a example of hbond command line?

Can you suggest me How can we do hbond vs time?

Any help would be greatly appreciated!
very very Thanking you
Subrata Paul
India Assam