VMD-L Mailing List

From: Esteban Gabriel Vega Hissi (egvega_at_gmail.com)
Date: Fri Mar 26 2010 - 16:28:57 CDT

Hi,
The problem may be related to shuffling atoms into multiple processors. Look
for a deshuf.ndx file and use trjconv -n deshuf.ndx to fix it.

Hope this help

Esteban

2010/3/25 gurvisha sandhu <gurvisha_at_yahoo.com>

>
> Hi
>
> I am having problem viewing a trajectory file of membrane protein
> simulation in VMD. The file is written in Gromacs trr format. A mesh of
> lines is created probably due to periodic boundary conditions. I tried to
> wrap coordinates using pbc wrap tool from vmd plugins but the mesh of lines
> is still there. Is there a way to fix this?
>
> regards
> Gurvisha
>
>
> Gurvisha Sandhu
> Research Associate
> IIT Delhi
>
>
>
>
>