VMD-L Mailing List

From: gurvisha sandhu (gurvisha_at_yahoo.com)
Date: Thu Mar 25 2010 - 03:27:23 CDT

Hi

I am having problem viewing a trajectory file of
membrane protein simulation in VMD. The file is written in Gromacs trr format. A
mesh of lines is created probably due to periodic boundary conditions. I tried
to wrap coordinates using pbc wrap tool from vmd plugins but the mesh of lines
is still there. Is there a way to fix this?
regards
Gurvisha

Gurvisha Sandhu
Research Associate
IIT Delhi