VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jan 11 2021 - 12:11:34 CST

Hi,
  Yes, your email was received on Friday night.
That said, we have many other meetings and emails going on, and
just because we've received it has no bearing on whether we've had
any free time to dig into it yet. The fact that nobody else on
the mailing list responded yet may be an indication of missing
supporting context or other information that may be needed to
answer your questions. This afternoon I'll look closely at your
inquiries and get back to you.

Best,
  John

On Mon, Jan 11, 2021 at 10:00:46AM -0800, Tiglath Moradkhan wrote:
> Hi VMD community
> Last week I sent an email regarding your help on the NAMD
> tutorial,  [1]http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-win.pdf.
> I would like to know whether it was received or not. I would also be
> grateful for your help on the issue I have on running the NAMD
> configuration file. Here is that email:
> I'm having problems running the NAMD configuration file in the NAMD
> tutorial, [2]http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-win.pdf.
> The CHARM file required is par_all27_prot_lipid.inp. However this file
> does not seem to be provided in the tcl plugin folder. The only file is
> par_all27_prot_lipid_na.inp So how can I access the first file? If the
> latter one is the same as the first one, when I try to run the
> configuration file I get the following error message:
> Â "FATAL ERROR: UNABLE TO OPEN CHARMM PARAMETER FILE
> ../common/par_all27_prot_lipid_na.inp"Â
> even though the CHARM file is in the common directory.
> Thanks
> Tiglath
>
> References
>
> Visible links
> 1. http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-win.pdf
> 2. http://www.ks.uiuc.edu/Training/Tutorials/namd/namd-tutorial-win.pdf 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/