Supported molecular file formats
Interactive molecular dynamics
Programs that use VMD
VMD research publications
How to cite VMD
VMD citation list, (11,400 as of Nov'13)
Documentation and SupportUser and installation guides
VMD-L mailing list
News and Announcements
GPU-accelerated molecular visualization on petascale supercomputing platforms, UltraVis'13
Most cited since 2008: "GPU-Accelerated Molecular Modeling Coming of Age"
Early Experiences Scaling VMD Molecular Visualization and Analysis Jobs on Blue Waters, Proc. XSCALE, 2013.
Rapid parameterization of small molecules using ffTK, JCC, 2013.
Workshop on GPU Programming for Molecular Modeling, August 2-4, 2013.
VMD QuickSurf rendering of HIV-1 capsid on cover of Nature 497 (7451), 2013.
VMD used for model building, preparation, and analysis of 64M-atom HIV-1 NAMD simulation on Blue Waters.
Visualization: A Cognition Amplifier, VMD Quantum Chemistry Visualization Tutorial, IJQC, 2013.
Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation, J. Comp. Chem, 2013.
Force Field Toolkit (FFTK) tutorial screencasts
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories, EuroVis 2012.
VMD 1.9.1 (MacOS X, Unix, Windows)
Immersive out-of-core visualization of large-size and long-timescale molecular dynamics trajectories, LNCS, 2011.