VMD-L Mailing List
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About this archive
Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri May 25 2012 - 14:34:06 CDT
- Re: vmd ATI card John Stone (Fri May 25 2012 - 13:05:20 CDT)
- Movie making with smoothed trajectories Jim Kress (Thu May 24 2012 - 11:02:18 CDT)
- TR: VMD atomselect with cartesian reference peter.schmidtke_at_fr.netgrs.com (Thu May 24 2012 - 08:16:55 CDT)
- Hydrogen bond energy calculation Aditya Padhi (Wed May 23 2012 - 22:56:10 CDT)
- 7th Industrial Fluid Properties Simulation Challenge Joshua D. Moore (Wed May 23 2012 - 11:22:23 CDT)
- Regarding the Use of STL Files as Boundary Features Phelan Jr, Frederick R. Dr. (Wed May 23 2012 - 11:05:46 CDT)
- pbc-box mohammad agha (Wed May 23 2012 - 10:31:08 CDT)
- vmd on Ubuntu: tcl howto Eros Albertazzi (Wed May 23 2012 - 05:37:57 CDT)
- Aspen Center for Physics 2013 Workshop MARK PLUMMER (Tue May 22 2012 - 14:58:42 CDT)
- Polymer Building in VMD Gkourmpis, Thomas (Tue May 22 2012 - 08:21:12 CDT)
- Fw: pbc-box mohammad agha (Mon May 21 2012 - 23:30:38 CDT)
- RMSF and bigdcd Raul Araya (Mon May 21 2012 - 09:39:45 CDT)
- FFTK plugin: in which order should the components be run? Francesco Pietra (Mon May 21 2012 - 04:20:58 CDT)
- pbc-box mohammad agha (Sat May 19 2012 - 08:02:59 CDT)
- cg_bonds.tcl mohammad agha (Sat May 19 2012 - 00:32:37 CDT)
- libGLU.so missing? Fatemesadat Emami (Fri May 18 2012 - 18:55:21 CDT)
- Waters enclosed in internal cavities Wendy Gonzlez (Fri May 18 2012 - 04:46:53 CDT)
- file splitting P.-L. Chau (Thu May 17 2012 - 03:19:50 CDT)
- how to calculate PBC box volume in VMD? Albert (Thu May 17 2012 - 01:26:36 CDT)
- Docking protein-protein vladanstefanovic_at_kg.ac.rs (Wed May 16 2012 - 16:08:22 CDT)
- panel missing! Reza Khalkhali (Wed May 16 2012 - 10:49:51 CDT)
- Getting PSF in right format from .gro file Donovan B.T. (Wed May 16 2012 - 08:54:59 CDT)
- Making only a subset of atoms transparent (or otherwise non-emphasized) Andrew DeYoung (Tue May 15 2012 - 12:49:22 CDT)
- APBS for small molecules jcorradi_at_criba.edu.ar (Sun May 13 2012 - 22:00:08 CDT)
- Suggestion for measure cluster Jrme Hnin (Fri May 11 2012 - 04:32:39 CDT)
- Loop for Andrs Morales (Thu May 10 2012 - 18:40:58 CDT)
- VMD1.9.1 is crashing my system mpincu (Thu May 10 2012 - 16:24:27 CDT)
- Clustering plugin updated to v2.0 Luis Gracia (Thu May 10 2012 - 12:54:20 CDT)
- PBC missed in Amber MD Albert (Thu May 10 2012 - 02:53:00 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 02:00:37 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 01:56:22 CDT)
- New crystallography plugin Dan Michael O. Heggø (Wed May 09 2012 - 17:33:04 CDT)
- New crystallography plugin Dan Michael O. Heggø (Wed May 09 2012 - 16:31:33 CDT)
- Add-H for crystallization water only Francesco Pietra (Wed May 09 2012 - 15:08:09 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 12:26:10 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 11:16:02 CDT)
- flashing the VMD mohammad agha (Tue May 08 2012 - 14:52:53 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:07:24 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Wed May 09 2012 - 11:01:54 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 10:11:38 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:24:58 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:26:50 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 10:30:23 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 11:07:23 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 11:13:43 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 12:24:53 CDT)
- Re: flashing the VMD John Stone (Wed May 09 2012 - 13:17:42 CDT)
- flashing the VMD mohammad agha (Thu May 10 2012 - 01:42:43 CDT)
- flashing the VMD mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- Re: flashing the VMD Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- counting specific atom types winardi, erik (Tue May 08 2012 - 08:37:01 CDT)
- diffusion coefficient plug-in in VMD fariba taghavi (Tue May 08 2012 - 07:06:31 CDT)
- flashing the VMD mohammad agha (Tue May 08 2012 - 05:18:04 CDT)
- flasshing the VMD mohammad agha (Mon May 07 2012 - 21:13:43 CDT)
- strange coloring Wei Chen (Mon May 07 2012 - 15:17:21 CDT)
- .trr files slow to load patrick wintrode (Mon May 07 2012 - 12:00:19 CDT)
- what's the Letter in figure caption meaning of TIME-LINE 2nd structure present? Albert (Mon May 07 2012 - 10:07:43 CDT)
- Fwd: VMD Stereo does not work Quadbufferd Christian Wohlschlager (Mon May 07 2012 - 02:46:23 CDT)
- %-sign shortcut for mouse->force->atom not working Christopher Neale (Sun May 06 2012 - 12:21:38 CDT)
- Save/restore display parameters Jrme Hnin (Fri May 04 2012 - 09:51:28 CDT)
- gromacs trajectory file ahmet yldrm (Thu May 03 2012 - 01:49:13 CDT)
- N-methylated amino acid topologies Joakim Swedberg (Wed May 02 2012 - 19:20:41 CDT)
- Free software for building peptide meisam valizadeh kiamahalleh (Wed May 02 2012 - 01:34:20 CDT)
- Problem with moving protein for all frames gke aye gven (Tue May 01 2012 - 16:14:24 CDT)
- Make "Load all at once" the default? Adding representations? Heather Mayes (Tue May 01 2012 - 15:45:39 CDT)
- helical content script Ban Arn (Tue May 01 2012 - 05:55:51 CDT)
- visualization of HOMO&LUMO in vmd leila karami (Tue May 01 2012 - 04:26:06 CDT)
- 3D density in the specific part of the simulation box fariba taghavi (Tue May 01 2012 - 00:48:35 CDT)
- In-Residence Training at the Theoretical & Computational Biophysics Group, July 16-27, 2012 TCBG Workshop (Mon Apr 30 2012 - 17:02:14 CDT)
- how to use the AutoIMD "Tool control" panel. Christopher Neale (Mon Apr 30 2012 - 11:28:19 CDT)
- writing pair/bond/angle/dihedral information for lammps input winardi, erik (Sun Apr 29 2012 - 17:17:14 CDT)
- Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 14:39:52 CDT)
- RE: Force Field ToolKit - Angles JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- RE: Force Field ToolKit - Angles Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- RE: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:58:39 CDT)
- Re: Force Field ToolKit - Angles Wang Yi (Sun Apr 29 2012 - 19:56:10 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 15:22:42 CDT)
- Re: Force Field ToolKit - Angles JC Gumbart (Mon Apr 30 2012 - 15:26:07 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:20:54 CDT)
- Re: Force Field ToolKit - Angles Mayne, Christopher G (Mon Apr 30 2012 - 20:15:21 CDT)
- Re: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:22:37 CDT)
- RE: Force Field ToolKit - Angles DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 19:29:33 CDT)
- RE: Force Field ToolKit - Angles Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- RE: Force Field ToolKit - Angles JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- Force Field Toolkit: scaling, weight etc DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 06:37:04 CDT)
- measure gofr script Emiliano Ippoliti (Sat Apr 28 2012 - 08:51:58 CDT)
- water mean residence time jampani srinivas (Fri Apr 27 2012 - 17:23:53 CDT)
- PSF generation for proteins with isopeptide bonds Zack Scholl (Thu Apr 26 2012 - 19:57:48 CDT)
- VMD Stereo not work Christian Wohlschlager (Thu Apr 26 2012 - 08:32:48 CDT)
- Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 04:42:40 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 11:55:08 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 12:26:50 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Thu Apr 26 2012 - 13:27:45 CDT)
- RE: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 23:34:55 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Fri Apr 27 2012 - 09:23:34 CDT)
- Re: Problem with generating psf using CGENFF Ahmet Bakan (Fri Apr 27 2012 - 11:27:08 CDT)
- RE: Problem with generating psf using CGENFF Bennion, Brian (Fri Apr 27 2012 - 11:57:18 CDT)
- Re: Problem with generating psf using CGENFF Axel Kohlmeyer (Thu Apr 26 2012 - 12:41:38 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 13:00:01 CDT)
- Re: Problem with generating psf using CGENFF amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Re:Problem with generating psf using CGENFF amin_at_imtech.res.in (Fri Apr 27 2012 - 22:35:16 CDT)
- Re:Problem with generating psf using CGENFF amin_at_imtech.res.in (Fri Apr 27 2012 - 22:46:21 CDT)
- Re: Problem with generating psf using CGENFF Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- VMD Question: How to build a polymer in VMD? Gkourmpis, Thomas (Thu Apr 26 2012 - 03:51:45 CDT)
- how to center protein? Chirag Vora (Tue Apr 24 2012 - 00:04:09 CDT)
- H-H dynamic bonds Q=A3ukasz_Pi=EAko=B6=22?= (Mon Apr 23 2012 - 17:21:42 CDT)
- Hydrophobic mismatch script Ban Arn (Mon Apr 23 2012 - 04:08:28 CDT)
- Movie Plugin Engelman, Joshua (Sat Apr 21 2012 - 15:54:54 CDT)
- openGL x,y position Mayne, Christopher G (Sat Apr 21 2012 - 14:01:51 CDT)
- HOOMD problems Engelman, Joshua (Fri Apr 20 2012 - 15:35:52 CDT)
- stereo images for publication Vlad Cojocaru (Fri Apr 20 2012 - 09:59:21 CDT)
- Anaglyph stereo with other colors Luis M. Snchez (Fri Apr 20 2012 - 08:09:19 CDT)
- Re: Anaglyph stereo with other colors John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- Re: Anaglyph stereo with other colors flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: Anaglyph stereo with other colors Luis M. Snchez (Sat Apr 21 2012 - 16:56:32 CDT)
- Re: Anaglyph stereo with other colors John Stone (Mon Apr 23 2012 - 15:49:37 CDT)
- Anaglyph stereo with other colors Luis M. Snchez (Fri May 04 2012 - 09:45:34 CDT)
- Re: Anaglyph stereo with other colors John Stone (Mon Apr 23 2012 - 15:40:19 CDT)
- Re: Anaglyph stereo with other colors flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: Anaglyph stereo with other colors John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- gofr limit, Kirkwood-Buff integrals Ivan Vyalov (Fri Apr 20 2012 - 05:43:18 CDT)
- AutoPSF Donovan B.T. (Fri Apr 20 2012 - 04:29:53 CDT)
- Re: Thickness of bilayer script Andrs Morales (Thu Apr 19 2012 - 20:58:35 CDT)
- segmentation fault with NAMDenergy amin_at_imtech.res.in (Thu Apr 19 2012 - 20:12:53 CDT)
- Problem with hydration script Bryan Roessler (Thu Apr 19 2012 - 13:17:39 CDT)
- Valence bond force field in NAMD Ganesh Kamath (Thu Apr 19 2012 - 09:26:35 CDT)
- Units of Isovalue Slider in Isovalue Drawing Method Andrew DeYoung (Wed Apr 18 2012 - 20:08:53 CDT)
- Average pocket size? patrick wintrode (Wed Apr 18 2012 - 11:45:04 CDT)
- Saving coordinates that meet selection criteria for each frame Ben Rodriguez (Tue Apr 17 2012 - 18:28:43 CDT)
- Misfunction of some plugins if compiled Vlastimil Zíma (Tue Apr 17 2012 - 12:28:10 CDT)
- Saving of pdb-trajectory in NMR-like format James Starlight (Tue Apr 17 2012 - 09:21:40 CDT)
- Using Measure SASA in NAMD Simulation Ajith Rathnaweera Rajapaksha Mudalige (Mon Apr 16 2012 - 18:54:32 CDT)
- lipid order parameter Ban Arn (Mon Apr 16 2012 - 05:16:31 CDT)
- align electron density map onto simulated structure (with different center) Magnus Andersson (Sun Apr 15 2012 - 18:42:21 CDT)
- Dynamical Network Analysis programs gncommunities and subopt elena ermakova (Sat Apr 14 2012 - 01:40:33 CDT)
- Is it possible to save the position and angle of the camera for future VMD sessions? Andrew DeYoung (Fri Apr 13 2012 - 13:07:20 CDT)
- Default representation style in command line Paulo E. Abreu (Fri Apr 13 2012 - 06:10:43 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Apr 12 2012 - 20:54:30 CDT)
- Drawing a high resolution transparent or translucent sphere Andrew DeYoung (Wed Apr 11 2012 - 20:37:20 CDT)
- saving dcd file different if by script or by interactive mode Jose Borreguero (Tue Apr 10 2012 - 17:32:11 CDT)
- topotools writelammps data winardi, erik (Tue Apr 10 2012 - 17:24:48 CDT)
- Problems with for loop Andrs Morales (Tue Apr 10 2012 - 11:43:10 CDT)
- VMD QUESTION( Movie making ) james Fernandez (Mon Apr 09 2012 - 16:49:21 CDT)
- Average angle between the lipid dipole vector and the bilayer normal. Andrs Morales (Mon Apr 09 2012 - 12:45:44 CDT)
- Re: problems with MDFF Gregorio Fernandez (Mon Apr 09 2012 - 06:21:33 CDT)
- IMD - remove forces on mouse release jonathan KHAO (Sun Apr 08 2012 - 13:05:45 CDT)
- Mac OS compilation what could be going wrongQ?= FX (Sun Apr 08 2012 - 12:03:42 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Mon Apr 09 2012 - 14:06:06 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Tue Apr 10 2012 - 03:50:32 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 10:51:01 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 11:57:08 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 11:58:36 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 14:15:59 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Wed Apr 11 2012 - 14:25:47 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Wed Apr 11 2012 - 14:33:34 CDT)
- Re: Mac OS compilation? what could be going wrong? FX (Mon Apr 09 2012 - 14:06:06 CDT)
- Re: Mac OS compilation? what could be going wrong? John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
- an old question Albert (Sat Apr 07 2012 - 00:28:29 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- Re: an old question Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 23:49:11 CDT)
- Re: an old question Albert (Tue Apr 10 2012 - 00:08:23 CDT)
- Re: an old question John Stone (Tue Apr 10 2012 - 14:11:51 CDT)
- Re: an old question Albert (Tue Apr 10 2012 - 14:23:16 CDT)
- Re: an old question PAUL NEWMAN (Tue Apr 10 2012 - 16:22:09 CDT)
- Re: an old question John Stone (Wed Apr 11 2012 - 13:57:49 CDT)
- Re: an old question Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- Re: an old question John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- problems with MDFF Gregorio Fernandez (Fri Apr 06 2012 - 02:42:22 CDT)
- Lipid order paramaeter script Ban Arn (Thu Apr 05 2012 - 04:35:52 CDT)
- Regarding saving data snoze pa (Wed Apr 04 2012 - 12:21:39 CDT)
- using min. image. conven. for transport properties Papan S (Wed Apr 04 2012 - 08:16:00 CDT)
- Auto Bead Display Size using topotools Phelan Jr, Frederick R. Dr. (Mon Apr 02 2012 - 14:50:47 CDT)
- python error? Albert (Mon Apr 02 2012 - 11:28:14 CDT)
- psfgen tyrosine anion-Fe bond Francesco Pietra (Sun Apr 01 2012 - 09:53:13 CDT)
- FW: How to set VMD_Plugin_path? a a (Sat Mar 31 2012 - 23:25:30 CDT)
- Printing Coordinates with Tcl/Tk Mr Bernard Ramos (Fri Mar 30 2012 - 12:16:00 CDT)
- Plotting of Co-ordinates on VMD james Fernandez (Fri Mar 30 2012 - 11:37:07 CDT)
- bondsrecalc question Denis Davydov (Fri Mar 30 2012 - 11:10:14 CDT)
- Dynamically displaying the length of hydrogen bonds Andrew DeYoung (Fri Mar 30 2012 - 10:30:08 CDT)
- RE: Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 15:32:59 CDT)
- Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 14:31:58 CDT)
- Possible MPI code problem (and fix) Christoph Willing (Thu Mar 29 2012 - 07:30:12 CDT)
- kill source'd tcl script Philippe Bopp / temporary (Wed Mar 28 2012 - 03:37:12 CDT)
- Can't set graphics window position to 0,0 Christoph Willing (Tue Mar 27 2012 - 18:17:10 CDT)
- secondary structure calculation Ban Arn (Tue Mar 27 2012 - 11:55:24 CDT)
- COORDINATES extraction of molecule's centers of mass VladanStefanovic_at_kg.ac.rs (Tue Mar 27 2012 - 01:37:23 CDT)
- autopsf: can't read "logfilename" Francesco Pietra (Sat Mar 24 2012 - 11:46:15 CDT)
- (no subject) rainy908_at_yahoo.com (Fri Mar 23 2012 - 07:55:48 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Mar 22 2012 - 17:42:38 CDT)
- (no subject) rainy908_at_yahoo.com (Thu Mar 22 2012 - 15:06:33 CDT)
- adding patches via autopsf Bennion, Brian (Wed Mar 21 2012 - 11:34:47 CDT)
- starting tkcon mbcx7sa3_at_zedat.fu-berlin.de (Wed Mar 21 2012 - 10:17:30 CDT)
- solvent radius setyanto md (Tue Mar 20 2012 - 01:03:29 CDT)
- lib/stride/README Benjamin Kaduk (Mon Mar 19 2012 - 21:57:22 CDT)
- plugins/hesstrans/Makefile recurses on CXXFLAGS Benjamin Kaduk (Mon Mar 19 2012 - 21:42:36 CDT)
- Define "color Element" through rgb values Roger Nadler (Mon Mar 19 2012 - 11:47:14 CDT)
- bond cutoff Zhuyi Xue (Mon Mar 19 2012 - 08:45:34 CDT)
- RMSD George Tzotzos (Sun Mar 18 2012 - 06:47:36 CDT)
- turns, using Stride Neelanjana Sengupta (Sat Mar 17 2012 - 02:03:52 CDT)
- Simulations with alpha methylated amino acids amin_at_imtech.res.in (Wed Mar 14 2012 - 20:17:04 CDT)
- writepdb, wrong lines in output Francois Martz (Wed Mar 14 2012 - 12:15:22 CDT)
- Desmond Trajectory Files on the fly in VMD Hitesh Patel (Tue Mar 13 2012 - 05:13:34 CDT)
- tutorial on inorganic builder setyanto md (Tue Mar 13 2012 - 03:56:35 CDT)
- load propka3.1 results error Albert (Mon Mar 12 2012 - 15:24:37 CDT)
- how to configure PROPKA3 in VMD 1.91? Albert (Mon Mar 12 2012 - 15:11:39 CDT)
- Drawing the simulation box from a Gromacs trajectory Andrew DeYoung (Mon Mar 12 2012 - 12:43:23 CDT)
- Force field toolkit (ffTK) - problem of reading Gaussian log file Wang Yi (Sat Mar 10 2012 - 13:58:20 CST)
- Re: get avg ca distance Ana Celia Vila Verde (Fri Mar 09 2012 - 02:10:56 CST)
- VMD Display Error - Detected X11 'Composite' extension Shalabh Maroo (Thu Mar 08 2012 - 17:53:05 CST)
- get avg ca distance Murpholino Peligro (Thu Mar 08 2012 - 15:33:19 CST)
- positively charged portion of the protein surface Thomas Evangelidis (Thu Mar 08 2012 - 06:23:20 CST)
- Re: [AMBER] Viewing with VMD bonds set by the "bond" command Francesco Pietra (Thu Mar 08 2012 - 03:48:48 CST)
- namd2 unable to find bond. Dave Arias (NelsonDa) (Wed Mar 07 2012 - 14:58:39 CST)
- Memory used by VMD is much less than installed Meyer-Almes, Franz-Josef, Prof. Dr. (Wed Mar 07 2012 - 05:03:08 CST)
- rmsf to b-factor conversion abinayar_at_imsc.res.in (Wed Mar 07 2012 - 04:06:29 CST)
- Individual components of RMSD? patrick wintrode (Tue Mar 06 2012 - 11:36:44 CST)
- make movies with user-defined script lam nguyen (Mon Mar 05 2012 - 12:49:00 CST)
- Re: make movies with user-defined script John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- Re: make movies with user-defined script John Stone (Fri Mar 09 2012 - 16:27:43 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 17:31:35 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 18:34:18 CST)
- Re: make movies with user-defined script Axel Kohlmeyer (Fri Mar 09 2012 - 19:35:32 CST)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 19:57:53 CST)
- Re: make movies with user-defined script John Stone (Fri Mar 09 2012 - 20:45:15 CST)
- Re: make movies with user-defined script lam nguyen (Sun Mar 11 2012 - 18:55:38 CDT)
- Re: make movies with user-defined script John Stone (Mon Mar 12 2012 - 15:53:06 CDT)
- Re: make movies with user-defined script lam nguyen (Mon Mar 12 2012 - 20:37:19 CDT)
- Re: make movies with user-defined script lam nguyen (Tue Mar 13 2012 - 16:23:17 CDT)
- Re: make movies with user-defined script lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- Re: make movies with user-defined script John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- information regarding tcl script for cell volume changing with each frame siladitya mukherjee (Sat Mar 03 2012 - 13:50:09 CST)
- Bug in VMD main? Ahmet Bakan (Sat Mar 03 2012 - 12:25:05 CST)
- Re: Using VMD to plot coordination number of solvated ion v/s time Ana Celia Vila Verde (Fri Mar 02 2012 - 10:15:23 CST)
- Using VMD to plot coordination number of solvated ion v/s time skolev_at_mnet.bg (Fri Mar 02 2012 - 09:33:07 CST)
- exporting marching cubes data from QuickSurf Zhe Wu (Thu Mar 01 2012 - 21:40:11 CST)
- Calculating RDF from xyz file siladitya mukherjee (Thu Mar 01 2012 - 16:38:54 CST)
- measure sasa Aaron Oakley (Wed Feb 29 2012 - 17:50:08 CST)
- how to place a membrane protein with OPM ? Albert (Wed Feb 29 2012 - 15:33:44 CST)
- Adsorption VMD Tcl script error vladanstefanovic_at_kg.ac.rs (Wed Feb 29 2012 - 13:51:58 CST)
- Lipid order parameters Ganesh Kamath (Mon Feb 27 2012 - 14:21:13 CST)
- Problems with PSFGEN Dave Arias (NelsonDa) (Mon Feb 27 2012 - 13:18:07 CST)
- Plugins use after compilation question Anthony Cruz Balberdi (Mon Feb 27 2012 - 12:38:01 CST)
- How to change the python include and linkage path in configure script Haw-Zan Goh (Mon Feb 27 2012 - 12:15:06 CST)
- From Vmd to lammps data file Dimitrios Mantzalis (Mon Feb 27 2012 - 06:55:34 CST)
- possible memory leak with pbc wrap Ana Celia Vila Verde (Fri Feb 24 2012 - 09:16:59 CST)
- Input selection as xyz co-ordinates Ban Arn (Wed Feb 22 2012 - 09:09:33 CST)
- Release of the R.E.D.-III.5 tools FyD (Wed Feb 22 2012 - 05:00:23 CST)
- Secondary structure assignment Zhuyi Xue (Tue Feb 21 2012 - 21:24:14 CST)
- [request] Best practices for rendering frames and making movies Diego Enry Barreto Gomes (Tue Feb 21 2012 - 17:22:56 CST)
- SASA -tcl script Ban Arn (Tue Feb 21 2012 - 12:36:07 CST)
- incorrect number of coordinates in .dcd file error abinayar_at_imsc.res.in (Tue Feb 21 2012 - 00:53:08 CST)
- how to add spring between two atoms SONY kaur (Mon Feb 20 2012 - 13:05:40 CST)
- .xyz bond winardi, erik (Mon Feb 20 2012 - 05:15:05 CST)
- Distance between center of mass of two amino acid residues. mish (Sun Feb 19 2012 - 10:27:45 CST)
- quicksurf and PBC Philippe Bopp / temporary (Sat Feb 18 2012 - 09:45:48 CST)
- About FFTP with transition metal complexes Francesco Pietra (Sat Feb 18 2012 - 00:23:01 CST)
- trajector@VMD Turgay Cakmak (Fri Feb 17 2012 - 08:54:15 CST)
- append glow lights to a VMD/Tachyon scene Filip Persson (Fri Feb 17 2012 - 03:11:53 CST)
- pdb reader/writer appears to corrupt pdb output Bennion, Brian (Thu Feb 16 2012 - 14:49:06 CST)
- Membrane and box with PBC Ricardo Soares (Thu Feb 16 2012 - 12:28:06 CST)
- Create multiple tcl interpreter child instances within VMD to run several scripts at once Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:23:15 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once John Stone (Thu Feb 16 2012 - 11:40:11 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once Axel Kohlmeyer (Thu Feb 16 2012 - 12:46:48 CST)
- quick-surf and throb Philippe Bopp / temporary (Thu Feb 16 2012 - 03:55:32 CST)
- Re: [Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides] Jim Phillips (Wed Feb 15 2012 - 10:24:11 CST)
- ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: Urszula Uciechowska (Wed Feb 15 2012 - 07:59:30 CST)
- installation error Urszula Uciechowska (Wed Feb 15 2012 - 03:28:59 CST)
- ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: Urszula Uciechowska (Wed Feb 15 2012 - 01:48:52 CST)
- Hbonds Analysis Aric Newton (Tue Feb 14 2012 - 14:22:27 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Re: Hbonds Analysis John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Re: Hbonds Analysis Aric Newton (Wed Feb 15 2012 - 18:11:58 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Wed Feb 15 2012 - 18:14:24 CST)
- Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. Aric Newton (Thu Feb 16 2012 - 10:27:38 CST)
- Re: Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. John Stone (Thu Feb 16 2012 - 10:34:58 CST)
- Re: Hbonds Analysis John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Re: Hbonds Analysis Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Timestep Molybdos Kirkimpolakis (Mon Feb 13 2012 - 15:53:15 CST)
- radial distribution funtion Paymon Pirzadeh (Mon Feb 13 2012 - 15:21:25 CST)
- Spatial (angular) distribution function David Cohen-Tanugi (Mon Feb 13 2012 - 13:38:11 CST)
- Patch for deoxy and dideoxy nucleotides Stefan Franzen (Mon Feb 13 2012 - 09:31:12 CST)
- Problem with VMD 1.9.1 (CUDA) on Snow Leopard Christian Mcksch (Mon Feb 13 2012 - 05:02:54 CST)
- Meadionize lecan (Sun Feb 12 2012 - 21:05:15 CST)
- PROPKA doesn't work in recent VMD1.9.1 Albert (Sun Feb 12 2012 - 05:25:14 CST)
- problem with catdcd Albert (Sun Feb 12 2012 - 02:23:40 CST)
- charges in VMD 1.9 vs. VMD 1.8.7 Philippe Bopp / temporary (Fri Feb 10 2012 - 07:43:17 CST)
- Stand-alone VMD ? R. Charbel Maroun (Fri Feb 10 2012 - 05:26:38 CST)
- multiseq doesn't respond to ctrl key correctly charles sun (Thu Feb 09 2012 - 22:58:45 CST)
- radial distribution function Paymon Pirzadeh (Thu Feb 09 2012 - 20:15:15 CST)
- change of font lecan (Thu Feb 09 2012 - 20:01:17 CST)
- Source Command MARK PLUMMER (Thu Feb 09 2012 - 10:06:42 CST)
- Source Command MARK PLUMMER (Thu Feb 09 2012 - 09:53:36 CST)
- Use of coarse grain plugin kirtana S (Wed Feb 08 2012 - 17:35:26 CST)
- VMD Contact map through time Zack Scholl (Wed Feb 08 2012 - 16:09:04 CST)
- charge visualization niladri patra (Tue Feb 07 2012 - 18:41:37 CST)
- Use variable in atomselect command Brian Kim (Tue Feb 07 2012 - 15:16:17 CST)
- NAMDenergy plugin_VMD_van der Waal interactions Bruno Lus Pinto de Oliveira (Tue Feb 07 2012 - 09:20:23 CST)
- Configure VMD while GROMACS Installation Hitesh Patel (Tue Feb 07 2012 - 03:39:30 CST)
- testing vmd1.9.1 Bennion, Brian (Mon Feb 06 2012 - 18:19:19 CST)
- Tcl script error Ban Arn (Mon Feb 06 2012 - 10:50:14 CST)
- Re: Tcl script error John Stone (Mon Feb 06 2012 - 10:58:26 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 11:12:12 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 11:54:35 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 11:57:57 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 12:02:47 CST)
- Re: Tcl script error Ban Arn (Mon Feb 06 2012 - 12:05:49 CST)
- Re: Tcl script error John Stone (Wed Feb 08 2012 - 15:18:44 CST)
- Re: Tcl script error Ban Arn (Wed Feb 08 2012 - 15:59:22 CST)
- Re: Tcl script error John Stone (Thu Feb 09 2012 - 14:23:21 CST)
- Re: Tcl script error Ban Arn (Thu Feb 09 2012 - 16:17:48 CST)
- Re: Tcl script error Axel Kohlmeyer (Mon Feb 06 2012 - 11:46:43 CST)
- Re: Tcl script error John Stone (Mon Feb 06 2012 - 10:58:26 CST)
- PSFGEN and Reading Bonds from PDB Files Rajan Vatassery (Sun Feb 05 2012 - 14:13:43 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Axel Kohlmeyer (Sun Feb 05 2012 - 15:36:29 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Chris Harrison (Sun Feb 05 2012 - 15:45:19 CST)
- Re: PSFGEN and Reading Bonds from PDB Files flavio seixas (Sun Feb 05 2012 - 18:24:40 CST)
- Re: PSFGEN and Reading Bonds from PDB Files Rajan Vatassery (Mon Feb 06 2012 - 11:02:14 CST)
- ffTK in the just released VMD 1.9.1 JC Gumbart (Sat Feb 04 2012 - 15:04:05 CST)
- Announce: VMD 1.9.1 released John Stone (Sat Feb 04 2012 - 14:25:58 CST)
- The spheres become oval, getting close to the screen borders Cosseddu, Salvatore (Sun Feb 05 2012 - 09:53:57 CST)
- create images in vmd oguz gurbulak (Fri Feb 03 2012 - 05:34:54 CST)
- how to display the full molecule when use "within" option? Albert (Fri Feb 03 2012 - 05:31:10 CST)
- floating error - tcl script Ban Arn (Fri Feb 03 2012 - 04:51:11 CST)
- Error while running steered MD script Ban Arn (Thu Feb 02 2012 - 10:24:18 CST)
- how to measure residues' chi angle in VMD? Albert (Thu Feb 02 2012 - 03:34:27 CST)
- how to merge two PDB trajectories? Albert (Wed Feb 01 2012 - 23:34:31 CST)
- is it possible to enable GPU rendering? Albert (Wed Feb 01 2012 - 14:04:02 CST)
- Save coor coordinates as pdb R. Charbel Maroun (Wed Feb 01 2012 - 12:26:31 CST)
- Gromacs analysis tools for Namd output PAUL NEWMAN (Wed Feb 01 2012 - 11:41:40 CST)
- Re: RE : PCA of desmond trajectories Hitesh Patel (Wed Feb 01 2012 - 10:26:44 CST)
- Unusual visualisations Ben Hall (Wed Feb 01 2012 - 09:54:01 CST)
- PCA of desmond trajectories Hitesh Patel (Wed Feb 01 2012 - 09:29:15 CST)
- Rmsd script with arguments Mustafa Tekpinar (Tue Jan 31 2012 - 13:48:40 CST)
- Quantitative meaning of volmap isosurface Ben Hall (Tue Jan 31 2012 - 06:01:20 CST)
- how to fix structural alignment pdbs thereal sisterdot (Tue Jan 31 2012 - 03:04:52 CST)
- how to configure Tachyon image render size? Albert (Mon Jan 30 2012 - 11:52:02 CST)
- NewRibbons/NewCartoon problem due to missing CUDA ? thereal sisterdot (Mon Jan 30 2012 - 05:27:33 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? Axel Kohlmeyer (Tue Jan 31 2012 - 07:18:10 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? John Stone (Tue Jan 31 2012 - 15:47:00 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? thereal sisterdot (Thu Feb 02 2012 - 05:49:34 CST)
- Calculation of ligand displacement Vs time Ban Arn (Mon Jan 30 2012 - 03:53:27 CST)
- problem with new plugin installation. Albert (Sat Jan 28 2012 - 01:18:14 CST)
- Cutting a sphere with a specified radius along a trajectory Mustafa Tekpinar (Fri Jan 27 2012 - 16:26:29 CST)
- Re: how to enlarge the menu font? Albert (Fri Jan 27 2012 - 01:33:48 CST)
- how to enlarge the menu font? Albert (Fri Jan 27 2012 - 00:18:36 CST)
- Viewing "other" data as a trajectory plays J. Nathan Scott (Thu Jan 26 2012 - 11:40:08 CST)
- package ::struct::set not available Ana Celia Vila Verde (Thu Jan 26 2012 - 08:36:56 CST)
- VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 16:08:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 19:35:42 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubetič (Thu Jan 26 2012 - 03:04:29 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Felix Frolow (Thu Jan 26 2012 - 06:32:50 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubetič (Thu Jan 26 2012 - 07:06:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Axel Kohlmeyer (Thu Jan 26 2012 - 06:52:27 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Thu Jan 26 2012 - 09:34:20 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... Ajasja Ljubetič (Thu Jan 26 2012 - 03:04:29 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... John Stone (Wed Jan 25 2012 - 19:35:42 CST)
- unit cell volume is zero jeela keel (Wed Jan 25 2012 - 15:56:40 CST)
- Looking for nice example images for VMD 1.9.1 release page... John Stone (Wed Jan 25 2012 - 14:29:39 CST)
- atomselect counting jeela keel (Wed Jan 25 2012 - 08:39:47 CST)
- Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 05:48:04 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 08:46:25 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 09:55:23 CST)
- Re: Topotools - limit to size of system it can be used for? John Stone (Tue Jan 24 2012 - 10:09:45 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 10:13:24 CST)
- Re: Topotools - limit to size of system it can be used for? John Stone (Tue Jan 24 2012 - 10:15:38 CST)
- Re: Re: Topotools - limit to size of system it can be used for? John Stone (Wed Feb 08 2012 - 10:06:45 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Wed Feb 15 2012 - 04:21:28 CST)
- Re: Topotools - limit to size of system it can be used for? Michael Doig (Tue Jan 24 2012 - 08:00:46 CST)
- Re: Topotools - limit to size of system it can be used for? Axel Kohlmeyer (Tue Jan 24 2012 - 07:13:27 CST)
- ImportError: cannot import name AtomSel Wim R. Cardoen (Mon Jan 23 2012 - 15:36:19 CST)
- Calling all DCD files in a directory sequentially using CatDCD Bryan Roessler (Mon Jan 23 2012 - 15:11:34 CST)
- script to modify cysteines with spinlabel Anna Kuznetsova (Mon Jan 23 2012 - 14:55:50 CST)
- VMD and Centos 6 Irene Newhouse (Sat Jan 21 2012 - 22:49:47 CST)
- ERROR) measure gofr: bad frame range given. max jeela keel (Fri Jan 20 2012 - 14:43:13 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 09:56:43 CST)
- Re: ERROR) measure gofr: bad frame range given. max John Stone (Mon Jan 23 2012 - 10:01:36 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 11:18:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 11:35:59 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 11:55:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 12:45:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 12:51:41 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 12:55:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 14:13:02 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 15:06:10 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 16:25:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 11:53:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- Re: ERROR) measure gofr: bad frame range given. max jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- is it possible to hide ONLY non-polar hydrogens? Albert (Fri Jan 20 2012 - 03:54:32 CST)
- (no subject) vaneeta bala (Fri Jan 20 2012 - 01:11:06 CST)
- ionic radii of sodium and chloride Zumot, Elia Nabil (Thu Jan 19 2012 - 20:12:38 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Fri Jan 20 2012 - 11:03:06 CST)
- Re: ionic radii of sodium and chloride John Stone (Fri Jan 20 2012 - 14:05:58 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 19:55:53 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Fri Jan 20 2012 - 20:17:22 CST)
- RE: ionic radii of sodium and chloride Cosseddu, Salvatore (Sun Jan 22 2012 - 15:27:30 CST)
- Re: ionic radii of sodium and chloride John Stone (Tue Jan 24 2012 - 15:23:04 CST)
- Re: ionic radii of sodium and chloride Alexander Balaeff (Fri Jan 20 2012 - 13:59:55 CST)
- RE: ionic radii of sodium and chloride Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Re: ionic radii of sodium and chloride Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- Generating a psf file using VMD Ganesh Kamath (Thu Jan 19 2012 - 16:56:47 CST)
- rendering question Alex Angerhofer (Thu Jan 19 2012 - 10:56:59 CST)
- Use "Metal complexes/FeS-clusters" in VMD paratool Jiajian Li (Wed Jan 18 2012 - 16:01:10 CST)
- Haptic devices for IMD gpat_at_bioacademy.gr (Wed Jan 18 2012 - 09:56:21 CST)
- New "surf" calculations in VMD 1.9.1 beta FX (Wed Jan 18 2012 - 06:12:08 CST)
- Using threads in VMD's tcl Vctor (Tue Jan 17 2012 - 10:04:57 CST)
- Question regarding HBond analysis Ganesh Kamath (Mon Jan 16 2012 - 17:05:19 CST)
- using vmd to apply symmetry transformations Bennion, Brian (Fri Jan 13 2012 - 09:21:39 CST)
- Yet another python question: how to run a python script from the vmd console ? maria goranovic (Fri Jan 13 2012 - 05:04:16 CST)
- precompiled python libraries still work for vmd 1.9 maria goranovic (Fri Jan 13 2012 - 04:50:12 CST)
- using fit_angle.py over a trajectory maria goranovic (Fri Jan 13 2012 - 03:36:26 CST)
- Problems in setting up low pH systems Sheng, Zi-Zhang (Wed Jan 11 2012 - 10:03:10 CST)
- camera position and scale Arham Amouie (Mon Jan 09 2012 - 08:09:46 CST)
- Implicit Ligand Sampling-molecule rotation issue Aaron Oakley (Sun Jan 08 2012 - 18:30:08 CST)
- vmd-density-profile subrata paul (Sat Jan 07 2012 - 07:11:26 CST)
- method for user-defined coloring JhonY. I. (Fri Jan 06 2012 - 11:53:37 CST)
- Coloring by RMSD during trajectory Joseph Bylund (Fri Jan 06 2012 - 11:40:27 CST)
- vmd 1.9.1 beta - quicksurf rendering artifacts Ajasja Ljubetič (Wed Jan 04 2012 - 05:08:18 CST)
- select whole residues Peter C. Lai (Tue Jan 03 2012 - 17:50:00 CST)
- represent water molecules oguz gurbulak (Mon Jan 02 2012 - 05:48:41 CST)
- external field application sarah k (Sun Jan 01 2012 - 03:57:21 CST)
- CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:07:05 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Wed Jan 11 2012 - 19:09:50 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 12 2012 - 10:48:06 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Fri Jan 13 2012 - 14:52:45 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Thu Jan 19 2012 - 12:47:21 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 19 2012 - 13:07:25 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Axel Kohlmeyer (Thu Jan 19 2012 - 13:55:04 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Thu Jan 19 2012 - 14:02:42 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Wed Jan 25 2012 - 09:59:13 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua A. Anderson (Wed Jan 25 2012 - 14:50:27 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
- VMD 1.9.1 beta 1 posted for download... John Stone (Fri Dec 30 2011 - 01:02:15 CST)
- using xtc file to generate pdb's J. Matthew Franklin (Tue Dec 27 2011 - 15:38:23 CST)
- paratool CHARMM style charges Adrian Jasiski (Tue Dec 27 2011 - 08:24:49 CST)
- problem generating NAD Magnus Andersson (Fri Dec 23 2011 - 13:37:19 CST)
- Parse Fep plugin error Joseph Antoine Garate (Fri Dec 23 2011 - 08:27:39 CST)
- Change Color Scale Joshua D. Moore (Wed Dec 21 2011 - 13:57:10 CST)
- Ionization Yu Zhou (Tue Dec 20 2011 - 21:23:41 CST)
- Hbond analysis George Tzotzos (Tue Dec 20 2011 - 13:46:38 CST)
- Protein-ligand contact flavio seixas (Tue Dec 20 2011 - 08:10:15 CST)
- I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 07:48:55 CST)
- Re: I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Re: I: vmd on windows John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- R: I: vmd on windows Sergio Decherchi (Tue Jan 03 2012 - 05:42:56 CST)
- Re: R: I: vmd on windows John Stone (Tue Jan 03 2012 - 10:06:38 CST)
- surface potential on an externally loaded msms surface Sergio Decherchi (Fri Jan 27 2012 - 11:52:12 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Fri Jan 27 2012 - 15:39:03 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Sat Jan 28 2012 - 05:57:10 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Sat Jan 28 2012 - 10:38:49 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Sat Jan 28 2012 - 14:22:10 CST)
- Re: surface potential on an externally loaded msms surface John Stone (Wed Feb 01 2012 - 16:21:39 CST)
- Re: surface potential on an externally loaded msms surface Sergio Decherchi (Thu Feb 02 2012 - 02:59:49 CST)
- Re: I: vmd on windows John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- Re: I: vmd on windows Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Re: About open file .pdbqt in VMD software John Stone (Mon Dec 19 2011 - 17:29:30 CST)
- VMD on Windows64 Mirco Wahab (Mon Dec 19 2011 - 16:51:45 CST)
- VMD stereo for NVidia Quadro 5000? Alexander Balaeff (Mon Dec 19 2011 - 12:07:18 CST)
- Assign velocities so I can color by velocity Joshua D. Moore (Mon Dec 19 2011 - 10:48:36 CST)
- vmd-l DynamicBond between two given type of atoms Salvatore Mario Cosseddu (Mon Dec 19 2011 - 10:44:17 CST)
- Re: vmd-l DynamicBond between two given type of atoms Axel Kohlmeyer (Mon Dec 19 2011 - 12:08:37 CST)
- vmd ligand fluctuation analysis Ban Arn (Fri Dec 16 2011 - 09:28:41 CST)
- vmd on windows Sergio Decherchi (Fri Dec 16 2011 - 09:16:42 CST)
- Multiple Stream Files: What Order? Bryan Roessler (Wed Dec 14 2011 - 11:20:25 CST)
- Solvating with Nonaqueous Solvent Rajan Vatassery (Tue Dec 13 2011 - 12:46:50 CST)
- package MDEnergy menica dibenedetto (Tue Dec 13 2011 - 12:13:02 CST)
- Povray renders labels always centered Bjoern Olausson (Mon Dec 12 2011 - 01:37:04 CST)
- Re: VMD and 3D visualization problems with Nvidia Quadro 4000 Karel Berka (Sat Dec 10 2011 - 15:29:36 CST)
- get Ramachadran plot using textmode Gurunath Katagi (Fri Dec 09 2011 - 22:00:28 CST)
- Tachyon render problem Tre Han Balta (Fri Dec 09 2011 - 02:45:09 CST)
- RE: TCL strangeness Gianluca Interlandi (Thu Dec 08 2011 - 20:27:28 CST)
- Tip to start VMD with external terminal Gianluca Interlandi (Thu Dec 08 2011 - 16:06:27 CST)
- to use tcl script in command line Sangita Kachhap (Thu Dec 08 2011 - 04:14:59 CST)
- Coloring particular atom with particular index Tre Han Balta (Wed Dec 07 2011 - 11:51:00 CST)
- Analyzing a 10ns simulation on Mac aborts Anthony Rey (Tue Dec 06 2011 - 23:25:17 CST)
- Script for Angular Distribution Function? David Cohen-Tanugi (Tue Dec 06 2011 - 09:45:36 CST)
- mmView - a tool for mmCIF exploration Daniel Svozil (Tue Dec 06 2011 - 05:38:03 CST)
- topology and parameter files for H2 and O2 Yungok Ihm (Tue Dec 06 2011 - 03:52:31 CST)
- Binding site similarity Ban Arn (Mon Dec 05 2011 - 09:51:55 CST)
- Improve OFF plugin: handle colors FX (Mon Dec 05 2011 - 07:20:06 CST)
- Rendering long and high-quality movies from VMD David Cohen-Tanugi (Sun Dec 04 2011 - 21:35:40 CST)
- Re: out-of-order writegmx with topotools 1.2 Axel Kohlmeyer (Sat Dec 03 2011 - 18:18:38 CST)
- Viewing System of Molecules where coordinates are in text file. Joey Vella (Thu Dec 01 2011 - 20:43:45 CST)
- How to disable CUDA in VMD-1.9? Joaim Swedberg (Wed Nov 30 2011 - 20:29:48 CST)
- Reading the SMD information form the log file Molybdos Kirkimpolakis (Wed Nov 30 2011 - 14:54:45 CST)
- Get the camera position SAPAY Nicolas 232321 (Wed Nov 30 2011 - 10:20:52 CST)
- Re: simulation bharat gupta (Wed Nov 30 2011 - 05:50:56 CST)
- convertind dcd to xyz file siladitya mukherjee (Tue Nov 29 2011 - 16:39:22 CST)
- Save pdb with original numbering Ricardo Soares (Tue Nov 29 2011 - 05:47:33 CST)
- Can Catdcd Write Out Periodic Cell Size Information? Tessa Young (Mon Nov 28 2011 - 01:20:31 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 10:39:55 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Axel Kohlmeyer (Mon Nov 28 2011 - 11:45:47 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 16:11:36 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Axel Kohlmeyer (Mon Nov 28 2011 - 17:13:02 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Pablo M. De Biase (Mon Nov 28 2011 - 17:41:40 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Tessa Young (Tue Nov 29 2011 - 23:06:25 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- vmd solvate Pavan Ghatty (Sun Nov 27 2011 - 13:56:17 CST)
- tcl script Ban Arn (Fri Nov 25 2011 - 12:16:47 CST)
- average structure script flavio seixas (Fri Nov 25 2011 - 09:52:40 CST)
- q4md-forcefieldtools.org announcement FyD (Fri Nov 25 2011 - 07:33:39 CST)
- VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Fri Nov 25 2011 - 00:51:07 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Ajasja Ljubetič (Fri Nov 25 2011 - 05:05:32 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Axel Kohlmeyer (Fri Nov 25 2011 - 09:38:01 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Axel Kohlmeyer (Mon Nov 28 2011 - 10:21:20 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU John Stone (Wed Nov 30 2011 - 09:50:16 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Wed Nov 30 2011 - 10:11:53 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU Bjoern Olausson (Mon Nov 28 2011 - 02:54:17 CST)
- POPE CHARMM36 generations error. mail gromacs (Thu Nov 24 2011 - 13:13:02 CST)
- how to convert Desmond trajectories into PDB in text mode? mail gromacs (Thu Nov 24 2011 - 13:09:40 CST)
- How to save Automatic psf builder script flavio seixas (Thu Nov 24 2011 - 12:03:15 CST)
- VMD STRIDE not functional after operating system upgrade Vlad Cojocaru (Thu Nov 24 2011 - 08:50:40 CST)
- Change coordinates Andrs Morales (Thu Nov 24 2011 - 02:14:02 CST)
- Translocate molecule within a box rainy908 (Wed Nov 23 2011 - 19:51:03 CST)
- clip plane and cpk / VdW Philippe Bopp / temporary (Wed Nov 23 2011 - 04:48:33 CST)
- Rebuilding psf file Siew Wen Leong (Wed Nov 23 2011 - 04:45:38 CST)
- Spam from my email hanif mahboobi (Wed Nov 23 2011 - 03:38:19 CST)
- (no subject) hanif mahboobi (Tue Nov 22 2011 - 21:55:31 CST)
- (no subject) hanif mahboobi (Tue Nov 22 2011 - 18:19:50 CST)
- Radial distribution function in VMD Chirag Vora (Tue Nov 22 2011 - 12:01:52 CST)
- bash scripts quits after few frames Jorgen Simonsen (Tue Nov 22 2011 - 03:55:02 CST)
- VMD and R Thomas Bishop (Mon Nov 21 2011 - 14:42:44 CST)
- compile VMD 1.9 with FLTK 1.3 Vlad Cojocaru (Mon Nov 21 2011 - 06:37:19 CST)
- movie out of principal component analysis maria goranovic (Mon Nov 21 2011 - 04:35:44 CST)
- Re: movie out of principal component analysis Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- Re: movie out of principal component analysis maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Re: movie out of principal component analysis Axel Kohlmeyer (Tue Nov 22 2011 - 08:10:39 CST)
- Re: movie out of principal component analysis Vlad Cojocaru (Tue Nov 22 2011 - 08:13:29 CST)
- Re: movie out of principal component analysis maria goranovic (Wed Nov 23 2011 - 04:25:08 CST)
- Re: movie out of principal component analysis Ahmet Bakan (Wed Nov 23 2011 - 21:27:45 CST)
- Re: movie out of principal component analysis maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Re: movie out of principal component analysis Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois David Brandon (Thu Nov 17 2011 - 13:53:59 CST)
- Installation problems with VMD 1.9 PaulW (Thu Nov 17 2011 - 07:17:44 CST)
- Patching Glu/N-terminus peptide bond type bond Joaim Swedberg (Wed Nov 16 2011 - 17:41:38 CST)
- Maximum length of an extended peptide? Aaron Oakley (Tue Nov 15 2011 - 17:53:14 CST)
- Mac OS X 64 bit Issues Andrew Fenley (Tue Nov 15 2011 - 15:00:56 CST)
- VMD slows down at multiple windows lam nguyen (Mon Nov 14 2011 - 16:51:46 CST)
- Re: VMD slows down at multiple windows Ajasja Ljubetič (Tue Nov 15 2011 - 03:08:28 CST)
- Re: VMD slows down at multiple windows lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
- Re: VMD slows down at multiple windows Peter C. Lai (Thu Nov 17 2011 - 00:35:13 CST)
- RE: VMD slows down at multiple windows Tristan Croll (Thu Nov 17 2011 - 00:29:45 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 11:16:10 CST)
- Re: VMD slows down at multiple windows John Stone (Thu Nov 17 2011 - 13:30:06 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:01:51 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:05:18 CST)
- Re: VMD slows down at multiple windows John Stone (Thu Nov 17 2011 - 14:13:49 CST)
- Re: VMD slows down at multiple windows lam nguyen (Thu Nov 17 2011 - 14:20:41 CST)
- Re: VMD slows down at multiple windows Gianluca Interlandi (Thu Nov 17 2011 - 16:32:09 CST)
- Re: VMD slows down at multiple windows John Stone (Fri Nov 18 2011 - 11:18:44 CST)
- Re: VMD slows down at multiple windows lam nguyen (Fri Nov 18 2011 - 12:43:30 CST)
- Re: VMD slows down at multiple windows lam nguyen (Fri Nov 18 2011 - 13:42:12 CST)
- Re: VMD slows down at multiple windows lam nguyen (Wed Nov 16 2011 - 22:20:54 CST)
- Re: VMD slows down at multiple windows John Stone (Wed Nov 16 2011 - 12:56:18 CST)
- Re: VMD slows down at multiple windows Ajasja Ljubetič (Tue Nov 15 2011 - 03:08:28 CST)
- pbc wrap Hitesh Patel (Mon Nov 14 2011 - 08:48:42 CST)
- (no subject) niaz poorgholami (Fri Nov 11 2011 - 22:02:25 CST)
- Volume Slice + Coloring by volume problem in MacOsx (REPOST) Passerone, Daniele (Fri Nov 11 2011 - 15:06:27 CST)
- how to place polymers on carbon nanotube surface niaz poorgholami (Fri Nov 11 2011 - 12:31:47 CST)
- Save "Visulaization State" from within Tk Console Bjoern Olausson (Fri Nov 11 2011 - 07:41:18 CST)
- Re: Save "Visulaization State" from within Tk Console Bjoern Olausson (Fri Nov 11 2011 - 07:48:03 CST)
- Re: Save "Visulaization State" from within Tk Console Axel Kohlmeyer (Fri Nov 11 2011 - 08:41:38 CST)
- Re: Save "Visulaization State" from within Tk Console John Stone (Fri Nov 11 2011 - 09:20:43 CST)
- UPDATE OCCUPANCY Jordi Faraudo (Fri Nov 11 2011 - 06:04:50 CST)
- RMSD Tool failes with MOL ID > 999 Bjoern Olausson (Fri Nov 11 2011 - 05:52:11 CST)
- Couldn't locate ppmtompeg Rabab Toubar (Thu Nov 10 2011 - 14:57:58 CST)
- installing and running VMD on Windows 64-bit Rabab Toubar (Thu Nov 10 2011 - 09:17:54 CST)
- pbwithin selection arash azari (Thu Nov 10 2011 - 07:58:28 CST)
- Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection) Sam Wallace (Wed Nov 09 2011 - 16:38:39 CST)
- How to parse very large trajectories? Aleksandr Kivenson (Wed Nov 09 2011 - 14:41:55 CST)
- Suppress "Info)" messages Bjoern Olausson (Mon Nov 07 2011 - 11:56:06 CST)
- tcl procedure to set data Casey Johnson (Sun Nov 06 2011 - 19:26:25 CST)
- blank output sarah k (Sun Nov 06 2011 - 09:34:39 CST)
- lipid bilayer thickness Andrs Morales (Sun Nov 06 2011 - 00:07:36 CDT)
- tkinter load problem in VMD Gianluca Interlandi (Sun Nov 06 2011 - 00:04:42 CDT)
- Batch image creation Juan Antonio Raygoza Garay (Fri Nov 04 2011 - 16:59:57 CDT)
- Secondary structure elements in VMD Rabab Toubar (Fri Nov 04 2011 - 16:03:26 CDT)
- find avgstruct hamze rahimi (Fri Nov 04 2011 - 04:30:38 CDT)
- Volume Slice + Coloring by volume problem in MacOsx Passerone, Daniele (Fri Nov 04 2011 - 00:31:15 CDT)
- How to understand the occupancy? lina (Thu Nov 03 2011 - 09:06:06 CDT)
- radius of gyration ban arn (Wed Nov 02 2011 - 14:41:09 CDT)
- Re: namd-l: selection of cholesterol molecules Chris Harrison (Wed Nov 02 2011 - 00:06:35 CDT)
- Use of RBCG to convert multiple frames from atomistic trajectory to Coarse grained rohan uttarwar (Tue Nov 01 2011 - 16:17:08 CDT)
- Finding resname without using atomselect? Casey Johnson (Tue Nov 01 2011 - 15:46:28 CDT)
- graphical representation kirtana S (Tue Nov 01 2011 - 12:21:29 CDT)
- rlwrap problem on Frank Barry (Tue Nov 01 2011 - 10:50:26 CDT)
- H-bond distance measurement Aditya Padhi (Tue Nov 01 2011 - 03:53:57 CDT)
- VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 02:16:14 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 19:08:07 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:28:51 CDT)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Wed Nov 16 2011 - 19:04:38 CST)
- Re: VRPN-ICMS conflict with NVidia driver John Stone (Fri Nov 18 2011 - 01:49:18 CST)
- Re: VRPN-ICMS conflict with NVidia driver John Stone (Wed Nov 30 2011 - 09:22:56 CST)
- RE: VRPN-ICMS conflict with NVidia driver Tristan Croll (Tue Nov 01 2011 - 19:03:55 CDT)
- Re: VRPN-ICMS conflict with NVidia driver Axel Kohlmeyer (Tue Nov 01 2011 - 08:15:36 CDT)
- selection matziast_at_med.uth.gr (Mon Oct 31 2011 - 13:39:43 CDT)
- Dynamic lines Bogdan Costescu (Mon Oct 31 2011 - 13:21:59 CDT)
- selection matziast_at_med.uth.gr (Mon Oct 31 2011 - 12:45:50 CDT)
- move ligand around the protin Steven Neumann (Mon Oct 31 2011 - 10:46:07 CDT)
- Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Mon Oct 31 2011 - 10:12:15 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 16:07:46 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 10:19:21 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Gianluca Interlandi (Fri Nov 11 2011 - 12:30:08 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 12:42:32 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Gianluca Interlandi (Fri Nov 11 2011 - 13:01:17 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets John Stone (Fri Nov 11 2011 - 16:13:14 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Hi all, Bo Højen Justesen (Mon Oct 31 2011 - 05:47:22 CDT)
- Run a variable through VMD Tk/Tcl console .vmdrc file Anthony Rey (Sun Oct 30 2011 - 06:55:06 CDT)
- Run a variable through VMD Tk/Tcl console /// .vmdrc file Anthony Rey (Sun Oct 30 2011 - 06:14:22 CDT)
- About the syntax in Autopsf - Add Patch for PRES PLIG Francesco Pietra (Sun Oct 30 2011 - 03:28:27 CDT)
- Structure preparation via VMD James Starlight (Sat Oct 29 2011 - 07:29:33 CDT)
- Problem with Movie Maker Carolyn Phillips (Fri Oct 28 2011 - 17:41:12 CDT)
- Installing CATDCD on a Mac Michael LeVine (Fri Oct 28 2011 - 14:55:14 CDT)
- VMD crashes. Diego Javier Alonso de Armio (Fri Oct 28 2011 - 10:22:19 CDT)
- Adding a three letter residue name to VMD's protein recognition J. Nathan Scott (Thu Oct 27 2011 - 13:13:09 CDT)
- Is it possible to automatically label all bonds? Mike Wykes (Thu Oct 27 2011 - 11:43:18 CDT)
- Visualizing Timeline (tml) data w/o having to load trajectories Bryan Roessler (Thu Oct 27 2011 - 11:34:40 CDT)
- average pdb from dcd file hamze rahimi (Thu Oct 27 2011 - 07:39:53 CDT)
- Xenon binding site free energies Aaron Oakley (Thu Oct 27 2011 - 01:30:23 CDT)
- Problem vmd 1.9 plus Cave Christian Wohlschlager (Thu Oct 27 2011 - 01:12:09 CDT)
- Compiling vmd 1.9 plugins Matt Fioravante (Wed Oct 26 2011 - 12:55:22 CDT)
- Selecting Atoms within a Volume, Manipulating Volumetric Data Michael LeVine (Sun Oct 23 2011 - 14:24:20 CDT)
- Calculating parameters in lipid bilayers Andrs Morales (Thu Oct 20 2011 - 22:04:03 CDT)
- Thinkpad X120e with Linux and VMD Gianluca Interlandi (Thu Oct 20 2011 - 19:48:32 CDT)
- coloring bonds on the same segments differently from those between segments lam nguyen (Thu Oct 20 2011 - 19:07:42 CDT)
- superimposing groups of three atoms bio lab (Thu Oct 20 2011 - 06:25:46 CDT)
- calculation hydrogen bond. subrata paul (Thu Oct 20 2011 - 02:19:04 CDT)
- area per lipid Andrs Morales (Thu Oct 20 2011 - 01:12:14 CDT)
- Error running IED Manish (Tue Oct 18 2011 - 13:39:09 CDT)
- angle calculation trajectory Peyman Z.Moghadam (Tue Oct 18 2011 - 12:28:16 CDT)
- atomselect and macro Molybdos Kirkimpolakis (Sat Oct 15 2011 - 15:34:59 CDT)
- Error running IED with VMD Manish (Fri Oct 14 2011 - 08:47:17 CDT)
- hbond analysis subrata paul (Fri Oct 14 2011 - 04:11:46 CDT)
- Installing VMD on Debian Linux James Starlight (Fri Oct 14 2011 - 01:51:01 CDT)
- Using two color scales in one scene Robert Johnson (Thu Oct 13 2011 - 14:23:02 CDT)
- How to select whole residues when at least one atom is within a specific distance Michael LeVine (Thu Oct 13 2011 - 12:48:43 CDT)
- topotools kirtana S (Wed Oct 12 2011 - 15:45:13 CDT)
- Uniform Distribution of drug molecules in water meisam valizadeh kiamahalleh (Wed Oct 12 2011 - 09:35:03 CDT)
- Re: query about "ViewChangeRender" plugin harish vashisth (Tue Oct 11 2011 - 10:42:09 CDT)
- query about "ViewChangeRender" plugin harish vashisth (Mon Oct 10 2011 - 17:04:45 CDT)
- amber traj to pqr - radii error Jesper Soerensen (Mon Oct 10 2011 - 12:42:30 CDT)
- alignment problem Markus K. Dahlgren (Mon Oct 10 2011 - 10:29:40 CDT)
- centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 08:59:11 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 15:34:54 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 17 2011 - 17:46:26 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 17 2011 - 17:58:49 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 17 2011 - 18:46:35 CDT)
- RE: centering problem in trajectory tool Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- RE: centering problem in trajectory tool Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- Re: VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800 Vlad Cojocaru (Fri Oct 07 2011 - 07:50:19 CDT)
- (no subject) denilson_at_dqi.ufla.br (Thu Oct 06 2011 - 15:12:44 CDT)
- RMSD vs RMSF Rabab Toubar (Thu Oct 06 2011 - 14:22:09 CDT)
- water bridged H-bond calculation Hitesh Patel (Thu Oct 06 2011 - 07:17:26 CDT)
- Solvating hexagonal unit cell Leandro Barros da Silva (Wed Oct 05 2011 - 13:00:27 CDT)
- VMD fails to start/stalls/crashes on AMD workstation with Quadro FX 3800 Vlad Cojocaru (Wed Oct 05 2011 - 06:47:08 CDT)
- unable to load Amber trajectories to visualize-Coordinate I/O rate 0 frames/sec, 0 MB/sec, 32.4 sec -Please help hongphuc nguyen (Wed Oct 05 2011 - 03:30:58 CDT)
- Fw: denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 11:18:01 CDT)
- (no subject) denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 08:56:08 CDT)
- solvent_box_type lara lara (Sat Oct 01 2011 - 08:13:43 CDT)
- GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 06:39:16 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- Re: GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 08:53:36 CDT)
- Re: GPU choice for large systems John Stone (Sat Oct 01 2011 - 21:26:37 CDT)
- Re: GPU choice for large systems Thomas Bishop (Wed Oct 05 2011 - 14:28:45 CDT)
- Re: GPU choice for large systems John Stone (Fri Nov 11 2011 - 12:41:03 CST)
- Re: GPU choice for large systems John Stone (Sat Oct 01 2011 - 21:20:18 CDT)
- Re: GPU choice for large systems Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Re: GPU choice for large systems Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- methanol_solvent box lara lara (Sat Oct 01 2011 - 05:45:32 CDT)
- mutator plugin generates extra bond for tip3 Burgess, Don E (Fri Sep 30 2011 - 11:49:26 CDT)
- H Bond Plug-in Questions Alex Hahn (Thu Sep 29 2011 - 11:53:13 CDT)
- VMD meets Andy Warhol/Campbell's Soup on display wall Thomas Bishop (Wed Sep 28 2011 - 18:43:14 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall Axel Kohlmeyer (Wed Sep 28 2011 - 19:46:03 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall John Stone (Fri Sep 30 2011 - 12:19:23 CDT)
- VMD with LAMMPS trjaectory - help? jgrime_at_uchicago.edu (Wed Sep 28 2011 - 18:20:36 CDT)
- vmd topotools 1.2 error oguz gurbulak (Wed Sep 28 2011 - 09:05:17 CDT)
- vmd topotools 1.2 error oguz gurbulak (Wed Sep 28 2011 - 06:41:37 CDT)
- Re: question on "Recompile VMD with larger index types" Axel Kohlmeyer (Wed Sep 28 2011 - 05:44:13 CDT)
- Re: Selecting a laptop for VMD and NAMD Paweł Kędzierski (Wed Sep 28 2011 - 04:07:30 CDT)
- question on "Recompile VMD with larger index types" JhonY. I. (Wed Sep 28 2011 - 00:50:33 CDT)
- Associating .crd file extension with COR Plugin Vadim Patsalo (Tue Sep 27 2011 - 21:08:31 CDT)
- connectivity in RBCG file(pdb extension) ANURAG JHA (Tue Sep 27 2011 - 18:46:20 CDT)
- Associating .crd file extension with COR Plugin. Vadim Patsalo (Tue Sep 27 2011 - 16:58:50 CDT)
- problem of exceeding max atom number JhonY. I. (Tue Sep 27 2011 - 12:51:43 CDT)
- Re: Selecting a laptop for VMD and NAMD (was: CUDA cores seen by VMD on GT540M) Paweł Kędzierski (Tue Sep 27 2011 - 09:29:31 CDT)
- convert .coor to pdb matziast_at_med.uth.gr (Mon Sep 26 2011 - 06:08:24 CDT)
- RDF related problems siladitya mukherjee (Sat Sep 24 2011 - 15:17:37 CDT)
- Epsilon, Rmin for copper ions Francesco Pietra (Sat Sep 24 2011 - 03:55:34 CDT)
- Fwd: Copper ions paratool Francesco Pietra (Fri Sep 23 2011 - 10:12:04 CDT)
- Fwd: Saved project and paratool Francesco Pietra (Fri Sep 23 2011 - 06:00:05 CDT)
- stream files and paratool Francesco Pietra (Fri Sep 23 2011 - 03:10:52 CDT)
- Locked files in Windows 7 Ignacio Fernndez Galvn (Thu Sep 22 2011 - 06:08:13 CDT)
- Quick TCl scripting question Anthony Rey (Wed Sep 21 2011 - 22:49:02 CDT)
- redirecting to output kirtana S (Wed Sep 21 2011 - 13:31:52 CDT)
- radial pair distribution problems aiswarya pawar (Wed Sep 21 2011 - 01:27:50 CDT)
- NetCDF plugin Alexandr Kornev (Tue Sep 20 2011 - 17:55:59 CDT)
- extra characters kirtana S (Tue Sep 20 2011 - 10:54:07 CDT)
- Problem with measuring dihedrals Jernej Zidar (Tue Sep 20 2011 - 03:47:24 CDT)
- Problem building POPE membrane with plugin using CHARMM36 Maggie Pruitt (Mon Sep 19 2011 - 12:19:41 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 Zumot, Elia Nabil (Fri Oct 14 2011 - 11:18:25 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Fri Oct 14 2011 - 11:37:57 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 Zumot, Elia Nabil (Fri Oct 14 2011 - 11:55:18 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 Axel Kohlmeyer (Fri Oct 14 2011 - 13:38:52 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Fri Oct 14 2011 - 15:09:44 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- RMSD heatmapper -plugin Anssi Nurminen (Mon Sep 19 2011 - 12:03:51 CDT)
- select each element of array kirtana S (Mon Sep 19 2011 - 11:11:59 CDT)
- Adding water in protein madhumita das (Mon Sep 19 2011 - 06:01:15 CDT)
- bug in Hbond Option hamid mosaddeghi (Mon Sep 19 2011 - 00:37:41 CDT)
- topotools readvarxyz puroorava annapaneni (Sun Sep 18 2011 - 12:22:58 CDT)
- Creating a fragment of the given protein Trung Nguyen Duc (Sun Sep 18 2011 - 11:43:18 CDT)
- fonts for paratool Francesco Pietra (Sun Sep 18 2011 - 09:11:38 CDT)
- I can't not see my post in Archive list hongphuc nguyen (Sat Sep 17 2011 - 22:52:58 CDT)
- units on the volmap tool Raul Araya (Sat Sep 17 2011 - 00:26:04 CDT)
- color with name Yamei (Fri Sep 16 2011 - 11:56:03 CDT)
- A bug about "trans" command KM Tu (Fri Sep 16 2011 - 10:33:49 CDT)
- Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 08:13:49 CDT)
- Re: Clustering MD trajectories Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 10:39:40 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 14:52:47 CDT)
- Re: Clustering MD trajectories John Stone (Fri Sep 16 2011 - 15:02:59 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Fri Sep 16 2011 - 15:42:45 CDT)
- Re: Clustering MD trajectories Anurag Sethi (Fri Sep 16 2011 - 17:04:29 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Mon Sep 19 2011 - 14:33:34 CDT)
- Re: Clustering MD trajectories Kirby Vandivort (Wed Sep 21 2011 - 14:52:54 CDT)
- Re: Clustering MD trajectories Vijay Vammi (Wed Sep 21 2011 - 15:06:13 CDT)
- Re: Clustering MD trajectories Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- calculate the solvent molecule within a cut off from protein aiswarya pawar (Thu Sep 15 2011 - 05:36:25 CDT)
- Cionize Christian Wohlschlager (Thu Sep 15 2011 - 01:12:16 CDT)
- LINK or PACTH command in VMD snoze pa (Wed Sep 14 2011 - 11:48:53 CDT)
- Does Paratool support CgenFF? Alexandre Suman de Araujo (Wed Sep 14 2011 - 07:22:33 CDT)
- Showing and Calculating the amount of water molecules inside carbon nanotube meisam valizadeh kiamahalleh (Tue Sep 13 2011 - 22:23:13 CDT)
- 2011 VMD User Survey results are posted... John Stone (Tue Sep 13 2011 - 15:26:21 CDT)
- RDF calculation for production steps siladitya mukherjee (Tue Sep 13 2011 - 15:15:53 CDT)
- Bug in 'source' command or in for loop? dwds gerge (Tue Sep 13 2011 - 12:06:10 CDT)
- Showing and Calculating the amount of water molecules inside carbon nanotube meisam valizadeh kiamahalleh (Mon Sep 12 2011 - 22:18:48 CDT)
- linux issues Vivek Ranjan (Mon Sep 12 2011 - 11:01:25 CDT)
- Displaying residues on chain A within X of chain B Irene Newhouse (Fri Sep 09 2011 - 16:19:18 CDT)
- Re: Displaying residues on chain A within X of chain B Axel Kohlmeyer (Fri Sep 09 2011 - 17:51:33 CDT)
- RE: Displaying residues on chain A within X of chain B Mark Cunningham (Fri Sep 09 2011 - 20:40:36 CDT)
- cionize Christian Wohlschlager (Fri Sep 09 2011 - 02:10:28 CDT)
- output values in my script kirtana S (Thu Sep 08 2011 - 17:38:04 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Sep 08 2011 - 12:38:41 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
- Re: Visualization of FEP simulation Paweł Kędzierski (Thu Oct 20 2011 - 03:06:30 CDT)
- RE: Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Oct 20 2011 - 06:15:37 CDT)
- Re: Visualization of FEP simulation Pawel Kedzierski (Fri Oct 21 2011 - 04:26:51 CDT)
- RE: Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Fri Oct 21 2011 - 12:37:34 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Wed Oct 19 2011 - 09:04:06 CDT)
- Visualization of FEP simulation Bruno Lus Pinto de Oliveira (Thu Sep 08 2011 - 13:24:32 CDT)
- Fwd: Pdb file generation,bad water removal and coordinates of psf. madhumita das (Wed Sep 07 2011 - 20:24:47 CDT)
- Visualizing Trajectory file: .pdb or .xyz winardi, erik (Wed Sep 07 2011 - 13:49:06 CDT)
- autoionize Jacopo Sgrignani (Wed Sep 07 2011 - 09:00:02 CDT)
- draw intersection volume between two spheres Filip Persson (Wed Sep 07 2011 - 08:30:33 CDT)
- TK console problem J. Matthew Franklin (Tue Sep 06 2011 - 22:40:26 CDT)
- VMD align to principal axis kirtana S (Tue Sep 06 2011 - 22:06:04 CDT)
- Count waters inside a specified box Manish (Tue Sep 06 2011 - 11:11:40 CDT)
- define water cavity using atom selection in graphical representations window Filip Persson (Tue Sep 06 2011 - 03:08:20 CDT)
- Re: define water cavity using atom selection in graphical representations window Hitesh Patel (Tue Sep 06 2011 - 04:20:35 CDT)
- Re: define water cavity using atom selection in graphical representations window Axel Kohlmeyer (Tue Sep 06 2011 - 05:11:00 CDT)
- plugin kirtana S (Mon Sep 05 2011 - 13:38:47 CDT)
- Density Profile in VMD oguz gurbulak (Mon Sep 05 2011 - 02:37:37 CDT)
- How to read pdbqt file? Chirag Vora (Sat Sep 03 2011 - 14:57:01 CDT)
- Re: namd-l: SASA of PBD files sajad falsafi (Sat Sep 03 2011 - 14:38:17 CDT)
- Radial distribution function Kartheek (Sat Sep 03 2011 - 10:10:03 CDT)
- Radial distribution function Kartheek (Sat Sep 03 2011 - 05:33:50 CDT)
- Re: Movie maker in VMD siladitya mukherjee (Thu Sep 01 2011 - 13:04:58 CDT)
- Movie maker in VMD siladitya mukherjee (Thu Sep 01 2011 - 11:11:15 CDT)
- Invitation to connect on LinkedIn Hideya Nakamura via LinkedIn (Wed Aug 31 2011 - 19:22:00 CDT)
- Fw: Hbond in VMD hamid mosaddeghi (Wed Aug 31 2011 - 12:29:01 CDT)
- Saving ionized.psf from add ions plug in of VMD Andrea Holfelder (Wed Aug 31 2011 - 10:35:45 CDT)
- pdb naming convention to get ribbon representation Casey Johnson (Wed Aug 31 2011 - 09:08:11 CDT)
- CUDA cores seen by VMD on GT540M Pawe Kdzierski (Wed Aug 31 2011 - 09:02:09 CDT)
- Hbond in VMD hamid mosaddeghi (Wed Aug 31 2011 - 03:12:47 CDT)
- Re: Fw: Lammps Output data format Axel Kohlmeyer (Tue Aug 30 2011 - 12:45:15 CDT)
- VMD display residues ban arn (Tue Aug 30 2011 - 12:14:35 CDT)
- Hbonds for a specific frame Hitesh Patel (Tue Aug 30 2011 - 11:47:23 CDT)
- VMD movie ban arn (Tue Aug 30 2011 - 10:31:58 CDT)
- Depletion of few atoms makkuva Ram vivek (Mon Aug 29 2011 - 22:16:16 CDT)
- loading a trajectory where particles aren't conservd Chris Knorowski (Mon Aug 29 2011 - 16:35:28 CDT)
- Lammps Output data format winardi, erik (Mon Aug 29 2011 - 12:20:31 CDT)
- 3d viz? Dave Schall (Mon Aug 29 2011 - 09:28:34 CDT)
- Water in binding site ban arn (Mon Aug 29 2011 - 04:47:53 CDT)
- Represent custom peptide as ribbon? Casey Johnson (Sat Aug 27 2011 - 09:24:07 CDT)
- vmd does not run on the VNC client peng liu (Thu Aug 25 2011 - 21:15:15 CDT)
- Fwd: Re: namd-l: How to evaluate the area per lipid and thickness of the lipid bilayer in a membrane-protein system? Vlad Cojocaru (Thu Aug 25 2011 - 02:14:15 CDT)
- Text in line with line Nuno Sousa Cerqueira (Wed Aug 24 2011 - 21:21:52 CDT)
- how to load Orient package in VMD Jiao, Dian NMN (-EXP) (Wed Aug 24 2011 - 15:24:42 CDT)
- Initial configuration reorientation Anna (Wed Aug 24 2011 - 11:48:38 CDT)
- convert pdb format to normal pdb format hamze rahimi (Wed Aug 24 2011 - 04:48:09 CDT)
- extrabonds Ling Wu (Tue Aug 23 2011 - 16:13:53 CDT)
- RMSD calculator extension George Tzotzos (Tue Aug 23 2011 - 08:59:19 CDT)
- Problem with psfgen Florian Mrugalla (Tue Aug 23 2011 - 07:41:02 CDT)
- Wrap PBC inside unit cell Casey Johnson (Mon Aug 22 2011 - 17:54:41 CDT)
- Fwd: Dowser plugin: Error message George Tzotzos (Mon Aug 22 2011 - 16:34:31 CDT)
- how to put two identical proteins in a same water sphere? juan jesus sanchez sanchez (Mon Aug 22 2011 - 13:06:12 CDT)
- DNA hairpin Shesh Nath (Sat Aug 20 2011 - 01:19:04 CDT)
- changing origin of rotation (NOT center of mass) Michael Daily (Fri Aug 19 2011 - 13:41:06 CDT)
- Turning Label Info output off in vmd console Sebastin Gutirrez (Thu Aug 18 2011 - 18:14:06 CDT)
- How can I draw secondary structures if I only have the carbon alpha coordinates Mert Gr (Thu Aug 18 2011 - 10:01:00 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Mert Gr (Thu Aug 18 2011 - 12:20:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 12:36:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Davide Provasi (Thu Aug 18 2011 - 13:00:15 CDT)
- RE: How can I draw secondary structures if I only have the carbon alpha coordinates Cojocaru, Vlad (Thu Aug 18 2011 - 14:46:45 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Axel Kohlmeyer (Thu Aug 18 2011 - 13:27:42 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Mert Gr (Thu Aug 18 2011 - 12:20:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates Tim Travers (Thu Aug 18 2011 - 12:26:14 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
- converting coarse grained POPC membranes to atomistic representation (AMBER, GAFF) Vlad Cojocaru (Thu Aug 18 2011 - 07:06:32 CDT)
- CatDcd Windows Version NAMITA BHADRA (Wed Aug 17 2011 - 23:52:28 CDT)
- how to rename a representation in vmd maria goranovic (Wed Aug 17 2011 - 04:18:42 CDT)
- changing label format with some arithmetic maria goranovic (Wed Aug 17 2011 - 04:05:19 CDT)
- Intel HD3000 versus ATI Mobility Radeon 6310 Gianluca Interlandi (Wed Aug 17 2011 - 00:09:01 CDT)
- MMTools Chathurika Abeyrathne (Tue Aug 16 2011 - 20:03:45 CDT)
- Spaceball navigator - making movies Michael Doig (Tue Aug 16 2011 - 06:16:42 CDT)
- visualizing unrealistic bonds Moeed (Mon Aug 15 2011 - 11:09:51 CDT)
- Re: visualizing unrealistic bonds John Stone (Mon Aug 15 2011 - 11:21:02 CDT)
- Re: visualizing unrealistic bonds Axel Kohlmeyer (Mon Aug 15 2011 - 12:07:13 CDT)
- Re: visualizing unrealistic bonds Magnus Andersson (Mon Aug 15 2011 - 14:26:08 CDT)
- Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 07:10:18 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:22:08 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:47:57 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 21:15:32 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 21:39:41 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sun Aug 14 2011 - 00:09:28 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Babban Mia (Sat Aug 13 2011 - 08:42:09 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT Axel Kohlmeyer (Sat Aug 13 2011 - 08:22:08 CDT)
- Maria Tziastoudi matziast_at_med.uth.gr (Sat Aug 13 2011 - 05:29:29 CDT)
- .COOR TO PDB FILE Babban Mia (Sat Aug 13 2011 - 01:11:48 CDT)
- Implicit Patch for Nucleic Acids? Stefan Franzen (Fri Aug 12 2011 - 13:46:24 CDT)
- Orienting a Protein Kapil Amarnath (Fri Aug 12 2011 - 11:19:31 CDT)
- how to wrap a protein with periodic waters Thomas Evangelidis (Fri Aug 12 2011 - 10:19:47 CDT)
- Maria Tziastoudi matziast_at_med.uth.gr (Fri Aug 12 2011 - 04:29:38 CDT)
- rmsf hamze rahimi (Fri Aug 12 2011 - 01:32:44 CDT)
- package require help hamze rahimi (Fri Aug 12 2011 - 01:31:22 CDT)
- Vmd Problem Sara baretller (Thu Aug 11 2011 - 15:49:08 CDT)
- Update selection every frame command Guenegou, Guillaume [ORDFR] (Thu Aug 11 2011 - 04:56:11 CDT)
- Change Path to Povray Moritz Mnsterberg (Thu Aug 11 2011 - 03:34:59 CDT)
- Molefacture - VMD agreement Marc Charendoff (Wed Aug 10 2011 - 23:10:27 CDT)
- Solvation in VMD using Non Standard Solvent System Babban Mia (Wed Aug 10 2011 - 07:35:32 CDT)
- Long atom types from CGenFF causing charge problems Anna Whitney (Tue Aug 09 2011 - 16:01:09 CDT)
- TCL and Plugins Mark Suhovecky (Tue Aug 09 2011 - 12:23:41 CDT)
- measure dihedral and improper angles matziast_at_med.uth.gr (Tue Aug 09 2011 - 11:02:57 CDT)
- Command line for thickness parameter Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 06:00:29 CDT)
- Solvate a Protein for Explicit Solvent MD Babban Mia (Tue Aug 09 2011 - 04:16:03 CDT)
- Command line for thickness parameter Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 03:46:46 CDT)
- How to cionize DNA? example needed! Bikan Tan (Mon Aug 08 2011 - 18:59:19 CDT)
- Vmd molecule rotation and translation Anna (Mon Aug 08 2011 - 18:41:49 CDT)
- script KIRTANA S (Mon Aug 08 2011 - 16:09:45 CDT)
- vmd Shesh Nath (Sat Aug 06 2011 - 02:04:59 CDT)
- xtc plugin writing ability Francesco Oteri (Fri Aug 05 2011 - 07:39:59 CDT)
- specden - IR spectral density calculator plugin Kukol, Andreas (Thu Aug 04 2011 - 03:25:17 CDT)
- problem to render .cms file AB (Thu Aug 04 2011 - 02:11:34 CDT)
- making movie Moeed (Wed Aug 03 2011 - 20:56:47 CDT)
- Re: making movie John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- Re: making movie John Stone (Tue Aug 23 2011 - 08:59:36 CDT)
- Re: making movie Axel Kohlmeyer (Tue Aug 23 2011 - 09:28:57 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 09:57:32 CDT)
- Re: making movie Axel Kohlmeyer (Tue Aug 23 2011 - 09:59:59 CDT)
- Re: making movie John Stone (Tue Aug 23 2011 - 10:36:05 CDT)
- Re: making movie Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- Re: making movie John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
- .car or .xyz output winardi, erik (Wed Aug 03 2011 - 19:39:47 CDT)
- Fwd: hbond analysis subrata paul (Wed Aug 03 2011 - 07:41:05 CDT)
- viewing dcd files Vivek Ranjan (Tue Aug 02 2011 - 19:51:37 CDT)
- Problems running VMD-CUDA with GNU-Linux Francesco Pietra (Tue Aug 02 2011 - 16:52:01 CDT)
- selection of sugars with VMD Molybdos Kirkimpolakis (Tue Aug 02 2011 - 14:11:49 CDT)
- vmd 1.9 sur doesn't work AB (Tue Aug 02 2011 - 13:58:43 CDT)
- VMD User Survey coming to your email inbox soon.... John Stone (Tue Aug 02 2011 - 10:19:24 CDT)
- about psf file generation safron saif (Mon Aug 01 2011 - 07:22:08 CDT)
- moveby command hanif mahboobi (Sun Jul 31 2011 - 06:13:57 CDT)
- a file for commands of console JhonY. I. (Sat Jul 30 2011 - 08:55:14 CDT)
- different number of atoms in each frame of the trajectory file Debasis Sengupta (Fri Jul 29 2011 - 16:58:34 CDT)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 17-21, 2011, Bremen, Germany David Brandon (Fri Jul 29 2011 - 14:15:06 CDT)
- PDB manipulation nahren manuel (Fri Jul 29 2011 - 09:44:38 CDT)
- Nvidia quadro Fx1300 problem Federico Filomia (Fri Jul 29 2011 - 03:55:25 CDT)
- converting .dx volumetric data to 2D isocontour Raul Araya (Thu Jul 28 2011 - 12:31:37 CDT)
- creating chiral molecules Peyman Z.Moghadam (Thu Jul 28 2011 - 04:21:16 CDT)
- How to save image in SVG format? ع (Tue Jul 26 2011 - 00:48:28 CDT)
- loading saved state from command line Erik Nordgren (Mon Jul 25 2011 - 19:12:03 CDT)
- Question about eval Pavan Ghatty (Mon Jul 25 2011 - 13:51:53 CDT)
- Understand a script Sara baretller (Mon Jul 25 2011 - 08:35:51 CDT)
- Re: namd-l: how to generate transparent figures? BIN ZHANG (Sun Jul 24 2011 - 11:31:04 CDT)
- cyclic peptides Alisha \ (Fri Jul 22 2011 - 13:09:55 CDT)
- SOLVED: Failure to run namd-cuda with gtx-470 Francesco Pietra (Fri Jul 22 2011 - 09:56:34 CDT)
- ViewChangerRender (VCR) plug-in Nuno Sousa Cerqueira (Thu Jul 21 2011 - 11:53:32 CDT)
- Novint Falcon in VMD - help with setup Filip Persson (Wed Jul 20 2011 - 05:12:44 CDT)
- MDFF problem hamze rahimi (Tue Jul 19 2011 - 23:13:05 CDT)
- about docking with VMD Hui WEI (Tue Jul 19 2011 - 16:37:36 CDT)
- Mutating a residue to a nonstandard amino acid Alisha \ (Tue Jul 19 2011 - 16:14:56 CDT)
- AMBER coordinates with periodic box Guenegou, Guillaume [ORDFR] (Tue Jul 19 2011 - 08:18:44 CDT)
- shades of licorice representation maria goranovic (Tue Jul 19 2011 - 07:53:52 CDT)
- Re: shades of licorice representation Axel Kohlmeyer (Tue Jul 19 2011 - 08:44:13 CDT)
- Re: shades of licorice representation Boris Steipe (Tue Jul 19 2011 - 10:10:01 CDT)
- RE: shades of licorice representation Mark Cunningham (Tue Jul 19 2011 - 11:53:54 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
- RE: shades of licorice representation Mark Cunningham (Tue Jul 19 2011 - 15:19:53 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 15:24:26 CDT)
- Re: shades of licorice representation maria goranovic (Wed Jul 20 2011 - 05:28:48 CDT)
- Re: shades of licorice representation Axel Kohlmeyer (Wed Jul 20 2011 - 08:57:58 CDT)
- Re: shades of licorice representation Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
- RE.: Re: VMD and MDFF: ssrestraints package error message under Windows Nicolas Coudray (Mon Jul 18 2011 - 14:46:13 CDT)
- how to change working directory of VMD? Esam Tolba (Mon Jul 18 2011 - 14:02:17 CDT)
- script KIRTANA S (Mon Jul 18 2011 - 13:20:52 CDT)
- Hydration dynamics:Phrase selection problem in vmd Kartheek (Mon Jul 18 2011 - 07:09:02 CDT)
- zinc-finger protein simulation hamze rahimi (Mon Jul 18 2011 - 06:55:08 CDT)
- calculate atom distance between two chain hamze rahimi (Mon Jul 18 2011 - 06:31:04 CDT)
- Problem of installing VMD 1.8.3 on Fedora14 Tatyana Sysoeva (Sun Jul 17 2011 - 15:42:28 CDT)
- autoionize adds too many ions Edward Lyman (Fri Jul 15 2011 - 14:34:48 CDT)
- angle between two domains connected at a hinge maria goranovic (Fri Jul 15 2011 - 08:35:52 CDT)
- hi kanchi subbarao rao (Fri Jul 15 2011 - 04:43:19 CDT)
- Initial configurations / topology for LAMMPS molecular dynamics (Thu Jul 14 2011 - 15:22:41 CDT)
- Implicit Ligand Sampling Jacopo Sgrignani (Thu Jul 14 2011 - 14:50:21 CDT)
- Implicit Ligand Sampling Jacopo Sgrignani (Thu Jul 14 2011 - 11:05:37 CDT)
- How to change the VMD working Directory Esam Tolba (Thu Jul 14 2011 - 09:10:17 CDT)
- Add user output to DCD trajectories Nima Nouri (Thu Jul 14 2011 - 05:18:29 CDT)
- script KIRTANA S (Tue Jul 12 2011 - 11:12:41 CDT)
- Retrieving Cremer-Pople parameters Mr Bernard Ramos (Tue Jul 12 2011 - 07:40:05 CDT)
- stereo anaglyph rendering thiru pathi (Sun Jul 10 2011 - 01:47:59 CDT)
- PBCwrap tools Simulation Biology (Sat Jul 09 2011 - 17:48:29 CDT)
- Does this work with VMD: Nvidia 3DVision Glasses + SyncMaster 2233RZ + GTX 580 + Win7? Ajasja Ljubetič (Sat Jul 09 2011 - 17:06:19 CDT)
- import selection in array for script KIRTANA S (Fri Jul 08 2011 - 14:37:11 CDT)
- Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 09:25:33 CDT)
- Re: Quadro FX1800 , Stereo and VMD John Stone (Fri Jul 08 2011 - 10:41:12 CDT)
- RE: Quadro FX1800 , Stereo and VMD Jacob Story (Fri Jul 08 2011 - 11:23:30 CDT)
- Re: Quadro FX1800 , Stereo and VMD John Stone (Fri Jul 08 2011 - 11:38:42 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 11:49:09 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 12:00:23 CDT)
- Re: Quadro FX1800 , Stereo and VMD Vlad Cojocaru (Fri Jul 08 2011 - 12:00:49 CDT)
- how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 07:59:10 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 11:20:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Mon Jul 11 2011 - 04:12:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work John Stone (Tue Jul 12 2011 - 13:19:29 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Tue Jul 12 2011 - 14:19:51 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Tue Jul 12 2011 - 15:17:50 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Wed Jul 13 2011 - 08:29:18 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
- Pucker parameters Payne, Christy (Thu Jul 07 2011 - 14:35:18 CDT)
- Salt brigde Christian Wohlschlager (Thu Jul 07 2011 - 01:06:51 CDT)
- script KIRTANA S (Wed Jul 06 2011 - 17:04:29 CDT)
- On Cremer-Pople ring puckering Mr Bernard Ramos (Wed Jul 06 2011 - 14:13:05 CDT)
- VMD and MDFF: ssrestraints package error message under Windows Nicolas Coudray (Wed Jul 06 2011 - 13:55:21 CDT)
- Problem with for loop. Sara baretller (Wed Jul 06 2011 - 09:38:20 CDT)
- Re: Problem with for loop. Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- Re: Re: Problem with for loop. Axel Kohlmeyer (Wed Jul 06 2011 - 10:57:44 CDT)
- RE: Re: Problem with for loop. Mark Cunningham (Wed Jul 06 2011 - 12:34:36 CDT)
- Re: Re: Problem with for loop. Sara baretller (Thu Jul 07 2011 - 08:08:42 CDT)
- RE: Re: Problem with for loop. Mark Cunningham (Thu Jul 07 2011 - 09:22:27 CDT)
- Re: Re: Problem with for loop. Sara baretller (Thu Jul 07 2011 - 16:13:03 CDT)
- Re: Re: Problem with for loop. Axel Kohlmeyer (Thu Jul 07 2011 - 16:59:46 CDT)
- Re: Re: Problem with for loop. Sara baretller (Fri Jul 08 2011 - 10:19:50 CDT)
- Re: Re: Problem with for loop. Sara baretller (Fri Jul 08 2011 - 15:09:16 CDT)
- Re: Problem with for loop. Axel Kohlmeyer (Wed Jul 06 2011 - 10:26:10 CDT)
- Re: Problem with for loop. Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- average radius of cavity over many frames from hole maria goranovic (Wed Jul 06 2011 - 02:28:49 CDT)
- Distance between atoms in frame snoze pa (Tue Jul 05 2011 - 18:12:31 CDT)
- qpt_conv command of Hole is interactive, how to automate it for multiple frames? maria goranovic (Tue Jul 05 2011 - 10:05:55 CDT)
- File as video safron saif (Tue Jul 05 2011 - 00:02:36 CDT)
- New Multi-platform Surface and volume Calculator Joo Ribeiro (Mon Jul 04 2011 - 16:06:53 CDT)
- Computer hangs on trying to launch VMD CUDA Francesco Pietra (Mon Jul 04 2011 - 02:19:02 CDT)
- contacts and pbc Jesper Srensen (Sun Jul 03 2011 - 08:39:02 CDT)
- Patchlet for MacOS 32/64-bit compilation FX (Sat Jul 02 2011 - 05:13:21 CDT)
- A patch for OFF import and a question about representation of surfaces FX (Sat Jul 02 2011 - 05:08:08 CDT)
- Problem with loop. it s not going to the next peptide Sara baretller (Fri Jul 01 2011 - 13:13:14 CDT)
- catdcd and velocity dcd file arash azari (Fri Jul 01 2011 - 10:06:11 CDT)
- VMD scripting: Perform PBCwrap+fitframes on several dcd files Filip Persson (Fri Jul 01 2011 - 08:03:26 CDT)
- VMD atom NUMER problem snoze pa (Wed Jun 29 2011 - 15:07:27 CDT)
- H-bond analysis Rupashree Shyama Ray (Wed Jun 29 2011 - 09:15:50 CDT)
- About psf file safron saif (Wed Jun 29 2011 - 04:02:57 CDT)
- Installation problem -Solvate mohan maruthi sena (Tue Jun 28 2011 - 23:06:58 CDT)
- Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 12:34:37 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
- Re: Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 18:08:31 CDT)
- Display Multiple Bond Order Joseph Bylund (Wed Jun 29 2011 - 11:57:50 CDT)
- Re: Display Multiple Bond Order Axel Kohlmeyer (Wed Jun 29 2011 - 12:41:50 CDT)
- Re: Display Multiple Bond Order John Stone (Wed Jun 29 2011 - 15:24:24 CDT)
- Re: Normalization of RDFs in gofr plugin gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
- Re: Normalization of RDFs in gofr plugin Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
- Bond between two hydrogen atoms Debasis Sengupta (Tue Jun 28 2011 - 12:23:05 CDT)
- Changing representations on a per-atom per-timestep basis J. Nathan Scott (Tue Jun 28 2011 - 11:34:19 CDT)
- Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 04:48:54 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 20:02:59 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 20:08:17 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 20:11:47 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 20:17:04 CDT)
- Re: Total Dipole Moment Chathurika Abeyrathne (Tue Jun 28 2011 - 19:56:41 CDT)
- Re: Total Dipole Moment Axel Kohlmeyer (Tue Jun 28 2011 - 09:48:33 CDT)
- VMD-I: rsmd calculation nataliaperez_at_infomed.sld.cu (Mon Jun 27 2011 - 14:57:41 CDT)
- VMD-I: nataliaperez_at_infomed.sld.cu (Mon Jun 27 2011 - 11:21:02 CDT)
- best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule Sara Biocomputation (Mon Jun 27 2011 - 10:39:30 CDT)
- color trajectory using specific values rather than color scale Brian Puchala (Mon Jun 27 2011 - 09:55:05 CDT)
- Re: color trajectory using specific values rather than color scale Axel Kohlmeyer (Mon Jun 27 2011 - 10:32:51 CDT)
- Re: color trajectory using specific values rather than color scale Jrme Hnin (Mon Jun 27 2011 - 11:20:41 CDT)
- Re: color trajectory using specific values rather than color scale Joshua A. Anderson (Mon Jun 27 2011 - 11:50:44 CDT)
- Molefacture: creating model helices Neelanjana Sengupta (Mon Jun 27 2011 - 06:31:03 CDT)
- protein-water RDF divya nayar (Mon Jun 27 2011 - 01:15:21 CDT)
- not to display atoms in certain region pouyan farzinpor (Fri Jun 24 2011 - 14:53:03 CDT)
- align axes Adrian Roitberg (Wed Jun 22 2011 - 14:17:50 CDT)
- VMD not working on MacOS X 10.6.7 Daniel Aiello (Thu Jun 23 2011 - 12:26:20 CDT)
- volume of hydration shells divya nayar (Thu Jun 23 2011 - 06:12:35 CDT)
- hydration shell volume divya nayar (Thu Jun 23 2011 - 01:43:55 CDT)
- finding water around protein divya nayar (Wed Jun 22 2011 - 23:55:35 CDT)
- can not compile VMD plugin hongphuc nguyen (Wed Jun 22 2011 - 22:15:55 CDT)
- Dividing the water in groups like WAT1; WAT2; WAT3 PAUL NEWMAN (Wed Jun 22 2011 - 20:41:32 CDT)
- APBS installation problem Sangita Kachhap (Wed Jun 22 2011 - 12:44:34 CDT)
- APBS installation problem Sangita Kachhap (Wed Jun 22 2011 - 11:23:19 CDT)
- Rotating a non-coordinate file Reza Salari (Wed Jun 22 2011 - 04:45:53 CDT)
- Reading PSF with extended atom types Gianluca Interlandi (Wed Jun 22 2011 - 00:05:18 CDT)
- problem in launching vmd kaustubh joshi (Tue Jun 21 2011 - 07:21:17 CDT)
- can not import Hessian/charge from single point calculation hongphuc nguyen (Tue Jun 21 2011 - 03:14:15 CDT)
- mutate amino acid hamze rahimi (Sun Jun 19 2011 - 02:25:05 CDT)
- how to get pqr format file with catdcd jnsong (Sat Jun 18 2011 - 01:25:15 CDT)
- Re: Fwd: "cuda error cudastreamcreate", Francesco Pietra (Fri Jun 17 2011 - 00:50:05 CDT)
- invisible files in windows Michael Zimmermann (Wed Jun 15 2011 - 16:57:39 CDT)
- rdf for specific group of atoms Rupashree Shyama Ray (Wed Jun 15 2011 - 08:29:29 CDT)
- water is forming bonds between hydrogens PAUL NEWMAN (Wed Jun 15 2011 - 00:25:46 CDT)
- water is forming bonds between oxigens PAUL NEWMAN (Wed Jun 15 2011 - 00:01:37 CDT)
- color sidechains differently Magnus Andersson (Tue Jun 14 2011 - 21:30:10 CDT)
- Invitation to connect on LinkedIn Iman Salehinia via LinkedIn (Tue Jun 14 2011 - 18:31:13 CDT)
- Vmd vs QUANTA Sajad Ahrari (Tue Jun 14 2011 - 01:46:38 CDT)
- Vmd vs QUANTA Sajad Ahrari (Mon Jun 13 2011 - 23:59:04 CDT)
- VolMap Tool Question Joe Janicki (Mon Jun 13 2011 - 13:36:18 CDT)
- showperiodic - not self? Jesper Srensen (Mon Jun 13 2011 - 12:14:44 CDT)
- cropping the missing residues from other PDB file Joyce Tan (Mon Jun 13 2011 - 09:37:14 CDT)
- Using VMD/NAMD to construct Cyclodextrins using Chamm topologies Sam Wallace (Sun Jun 12 2011 - 21:34:17 CDT)
- simulation in Nitrogen box sarah k (Sat Jun 11 2011 - 09:12:39 CDT)
- create surface of overlapping VdW volume Dow Hurst (Fri Jun 10 2011 - 18:17:50 CDT)
- Selecting multiple ranges Seibold, Stephen (Fri Jun 10 2011 - 09:28:48 CDT)
- Problem using rotate command in a script ...(2) Alberto Sergio Garay (Fri Jun 10 2011 - 07:10:05 CDT)
- Problem using rotate command in a script ...(2) Alberto Sergio Garay (Thu Jun 09 2011 - 13:11:01 CDT)
- Problem using rotate command in a script .... Alberto Sergio Garay (Thu Jun 09 2011 - 09:36:33 CDT)
- Adding missing residues Joyce Tan (Thu Jun 09 2011 - 01:50:05 CDT)
- Tracing distances among atoms in a MD simulation DCM CA (Wed Jun 08 2011 - 20:57:17 CDT)
- parameterization tool Bennion, Brian (Wed Jun 08 2011 - 16:14:31 CDT)
- xy diagonal Magnus Andersson (Wed Jun 08 2011 - 12:29:30 CDT)
- Problem using rotate in a script .... Alberto Sergio Garay (Wed Jun 08 2011 - 10:33:49 CDT)
- VMD on Intel core i3 + Ubuntu masci002_at_umn.edu (Tue Jun 07 2011 - 19:03:26 CDT)
- Problem with Starting vmd after Debian System Upgrade Angelo Rossi (Tue Jun 07 2011 - 11:26:06 CDT)
- VMD moviemaker KK Sahu (Tue Jun 07 2011 - 05:22:34 CDT)
- saving dcd with less frames Joyce Tan (Tue Jun 07 2011 - 04:39:35 CDT)
- VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Tue Jun 07 2011 - 04:01:34 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:02:10 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Wed Jun 08 2011 - 03:33:23 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd John Stone (Thu Jun 09 2011 - 16:02:54 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Fri Jun 10 2011 - 04:26:48 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd maria goranovic (Fri Jun 10 2011 - 04:36:02 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd John Stone (Fri Jun 10 2011 - 09:27:05 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd Ajasja Ljubetič (Tue Jun 07 2011 - 09:02:10 CDT)
- Dipole Moment Monitoring Sally Fisher (Mon Jun 06 2011 - 21:10:57 CDT)
- topotools {.top} for Gromacs {.tpr} generation Lalit (Mon Jun 06 2011 - 18:19:21 CDT)
- Superimposition problem Qmer_AN?= (Mon Jun 06 2011 - 12:30:04 CDT)
- Tachyon post-render commands under Win-XP Daniel Holloway (Mon Jun 06 2011 - 08:50:17 CDT)
- Fw: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sun Jun 05 2011 - 08:06:56 CDT)
- how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Fri Jun 03 2011 - 22:27:58 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:27:05 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 13:09:48 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 21:24:26 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? John Stone (Mon Jun 06 2011 - 13:45:23 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? John Stone (Mon Jun 06 2011 - 13:42:29 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Tue Jun 07 2011 - 04:55:18 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? Craig Knox (Mon Jun 06 2011 - 11:33:42 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- questions about RBCG (Fri Jun 03 2011 - 21:27:17 CDT)
- submit VMD_SS script sajad falsafi (Fri Jun 03 2011 - 11:35:20 CDT)
- Invitation to connect on LinkedIn Lucas Fernández Seivane via LinkedIn (Fri Jun 03 2011 - 02:30:33 CDT)
- submit VMD_SS script sajad falsafi (Fri Jun 03 2011 - 00:59:22 CDT)
- installation trouble Michael Zimmermann (Thu Jun 02 2011 - 23:00:40 CDT)
- For loops decelerate Benjamin Hall (Thu Jun 02 2011 - 03:39:02 CDT)
- charge information for the PMEpot plugin Raul Araya (Wed Jun 01 2011 - 11:48:07 CDT)
- .gro format to .pqr format Mona Habibi (Wed Jun 01 2011 - 10:17:20 CDT)
- Compiling plugins without netcdf Guido Polles (Wed Jun 01 2011 - 10:09:24 CDT)
- Re: [lammps-users] using topotools to view lammps output Axel Kohlmeyer (Wed Jun 01 2011 - 08:48:04 CDT)
- Invitation to connect on LinkedIn masoud Kazemi via LinkedIn (Wed Jun 01 2011 - 07:55:20 CDT)
- problem with bigdcd rmsd calculaton output Bian Li (Mon May 30 2011 - 22:22:48 CDT)
- Issue with NAMD/VMD tutorial Matthew Bick (Mon May 30 2011 - 12:32:29 CDT)
- Save Coordinates for Multiple Loads Qmer_AN?= (Sun May 29 2011 - 09:14:25 CDT)
- Protein cavities BRAULIO VALDEBENITO MATURANA (Sat May 28 2011 - 23:26:02 CDT)
- use variable in atomselect dhacademic (Fri May 27 2011 - 14:55:26 CDT)
- creating psf file seda demirci (Fri May 27 2011 - 10:13:05 CDT)
- Protein cavities BRAULIO FAVIN VALDEBENITO MATURANA (Thu May 26 2011 - 12:41:48 CDT)
- tips for an annoying aliasing task? Edward Lyman (Thu May 26 2011 - 10:33:27 CDT)
- measure fit - wrong alignment Eduardo Oliveira (Thu May 26 2011 - 05:56:40 CDT)
- surface of an atomic property Anna Amat (Wed May 25 2011 - 11:44:38 CDT)
- 3Dconnexion SpaceNavigator (OS X) Hans Martin Senn (Wed May 25 2011 - 11:37:51 CDT)
- surface from a generic atomic property Anna Amat (Wed May 25 2011 - 11:15:11 CDT)
- pbctools plugin & protein-bound ligand Irene Newhouse (Tue May 24 2011 - 14:36:12 CDT)
- trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 08:39:08 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Tue May 24 2011 - 09:48:15 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 John Stone (Tue May 24 2011 - 12:13:07 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Tue May 24 2011 - 14:08:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Wed May 25 2011 - 04:51:02 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Wed May 25 2011 - 05:35:42 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Wed May 25 2011 - 05:57:10 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Wed May 25 2011 - 06:05:44 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 John Stone (Wed May 25 2011 - 10:18:12 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Mon Jun 06 2011 - 07:36:35 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Axel Kohlmeyer (Tue May 24 2011 - 12:14:39 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Tue May 24 2011 - 12:22:00 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 maria goranovic (Tue May 24 2011 - 11:19:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 Ajasja Ljubetič (Tue May 24 2011 - 09:48:15 CDT)
- size for render Kevin Knoops (Tue May 24 2011 - 06:01:15 CDT)
- vmd calculating wrong number of frames in xtc file using molinfo numframes ? maria goranovic (Mon May 23 2011 - 10:13:08 CDT)
- problem in overlapping atoms Parul tew (Sun May 22 2011 - 05:01:31 CDT)
- Non-cuda version of VMD on Linux? Ismail, Mohd F. (Sat May 21 2011 - 22:02:01 CDT)
- color atom by stress Shaorui Yang (Sat May 21 2011 - 15:23:48 CDT)
- move volume file Lane Votapka (Fri May 20 2011 - 17:11:49 CDT)
- Re: move volume file Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- Mean value of el. potential ? Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
- Re: Mean value of el. potential ? Axel Kohlmeyer (Wed May 25 2011 - 19:51:55 CDT)
- Re: Mean value of el. potential ? Marek Maly (Thu May 26 2011 - 04:29:12 CDT)
- RE: Mean value of el. potential ? Walter Rocchia (Thu May 26 2011 - 06:02:03 CDT)
- Re: Mean value of el. potential ? Marek Maly (Thu May 26 2011 - 06:51:44 CDT)
- Mean value of el. potential ? Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
- Re: move volume file Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- antechamber for Windows Keith Battle (Fri May 20 2011 - 12:48:21 CDT)
- Displaying protein AND ligand from an amber trajectory George Tzotzos (Fri May 20 2011 - 08:31:17 CDT)
- pbc unwrap not complete Nicola Giacche' (Fri May 20 2011 - 08:05:40 CDT)
- Problems with APBS calculations Ramon Garduno-Juarez (Thu May 19 2011 - 20:51:53 CDT)
- Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 10:43:10 CDT)
- Re: Aligning two proteins of varying atom numbers Axel Kohlmeyer (Thu May 19 2011 - 11:17:37 CDT)
- Re: Aligning two proteins of varying atom numbers Joseph Bylund (Thu May 19 2011 - 11:31:52 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 11:37:40 CDT)
- Re: Aligning two proteins of varying atom numbers Eduard Schreiner (Thu May 19 2011 - 12:07:00 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 04:23:12 CDT)
- Re: Aligning two proteins of varying atom numbers Axel Kohlmeyer (Fri May 20 2011 - 05:47:18 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 06:37:47 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Fri May 20 2011 - 09:04:53 CDT)
- Re: Aligning two proteins of varying atom numbers Gianluca Interlandi (Fri May 20 2011 - 11:26:25 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Sun May 22 2011 - 16:25:11 CDT)
- Re: Aligning two proteins of varying atom numbers ban arn (Thu May 19 2011 - 11:37:40 CDT)
- indentified particular water molecule Sangita Kachhap (Thu May 19 2011 - 07:24:03 CDT)
- aligning multiple trajectories to a single .pdb file andrew ritchie (Wed May 18 2011 - 13:30:54 CDT)
- problem merging two identical proteins juan jesus sanchez sanchez (Wed May 18 2011 - 12:32:09 CDT)
- reading .vel files and .veldcd files Mao Mao (Wed May 18 2011 - 10:50:46 CDT)
- run and close vmd with bash script? Jorgen Simonsen (Wed May 18 2011 - 07:04:26 CDT)
- hi to all kanchi subbarao rao (Tue May 17 2011 - 11:34:04 CDT)
- Tkcon on at startup Qmer_AN?= (Tue May 17 2011 - 11:00:19 CDT)
- Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? jnsong (Tue May 17 2011 - 08:54:54 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? Axel Kohlmeyer (Tue May 17 2011 - 09:44:26 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? John Stone (Tue May 17 2011 - 10:09:55 CDT)
- convert prmtop to psf Jorgen Simonsen (Tue May 17 2011 - 04:17:33 CDT)
- Re: error in movie generator Esam Tolba (Tue May 17 2011 - 03:57:06 CDT)
- velocity profile Mao Mao (Mon May 16 2011 - 10:45:55 CDT)
- error in movie generator Esam Tolba (Mon May 16 2011 - 10:01:27 CDT)
- sharing atoms beyza bilgic (Mon May 16 2011 - 08:52:33 CDT)
- Secondary Structure Disappears after Molecule Move Qmer_AN?= (Mon May 16 2011 - 05:45:21 CDT)
- pbc wrap cnu gromacs (Fri May 13 2011 - 13:50:30 CDT)
- PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Fri May 13 2011 - 04:49:14 CDT)
- AW: PhD position in Computational Structural Biology at MPI Muenster Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Ajasja Ljubetič (Fri May 13 2011 - 07:04:26 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Wendy Gonzlez (Fri May 13 2011 - 07:54:29 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Bjoern Olausson (Fri May 13 2011 - 13:23:05 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Olaf Lenz (Sun May 15 2011 - 10:34:40 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Axel Kohlmeyer (Sun May 15 2011 - 11:51:22 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Vlad Cojocaru (Sun May 15 2011 - 13:47:01 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Gianluca Interlandi (Sun May 15 2011 - 14:42:22 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster Axel Kohlmeyer (Sun May 15 2011 - 16:47:40 CDT)
- AW: PhD position in Computational Structural Biology at MPI Muenster Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 13:28:48 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- RE: Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 18:48:11 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 19:40:17 CDT)
- RE: Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Fri May 13 2011 - 06:41:40 CDT)
- Re: Compiling plugins without netcdf support returns an error. John Stone (Thu May 12 2011 - 15:58:12 CDT)
- Re: Compiling plugins without netcdf support returns an error. Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- Compiling plugins without netcdf support returns an error. Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 13:16:46 CDT)
- Re: Large positive non-integer charge Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Re: Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 14:16:14 CDT)
- RE: Large positive non-integer charge David A. Horita (Thu May 12 2011 - 16:51:39 CDT)
- Re: Large positive non-integer charge Grant Schauer (Thu May 12 2011 - 18:03:12 CDT)
- Re: Large positive non-integer charge John Stone (Tue May 17 2011 - 11:03:29 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 16:06:32 CDT)
- Re: Large positive non-integer charge John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Re: Large positive non-integer charge Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Atom ID/Color change with timesteps Adkins, Laura R (Wed May 11 2011 - 19:17:05 CDT)
- May 18th, Late abstract submission deadline for 3Dsig Structural Bioinformatics & Computational Biophysics 3D SIG (Wed May 11 2011 - 16:57:22 CDT)
- command for volume slice? Jennifer Williams (Wed May 11 2011 - 08:16:25 CDT)
- changing the color of Sn atom beyza bilgic (Wed May 11 2011 - 06:12:50 CDT)
- changing the color of Sn atom Beyza Bilgi (Wed May 11 2011 - 05:24:31 CDT)
- to change color of Sn atom Beyza Bilgi (Wed May 11 2011 - 04:33:51 CDT)
- to change color of Sn atom Beyza Bilgi (Wed May 11 2011 - 04:28:07 CDT)
- save coordinate POSCAR Haijun (Tue May 10 2011 - 12:56:09 CDT)
- apbs with vmd, no output Asmaa Elsheshiny (Tue May 10 2011 - 12:14:08 CDT)
- bad window parameter -- SOLVED Robert Wohlhueter (Tue May 10 2011 - 10:16:48 CDT)
- Calculating RMSD on two sets of points Carolyn Phillips (Tue May 10 2011 - 09:57:25 CDT)
- bad window parameter Robert Wohlhueter (Tue May 10 2011 - 09:27:34 CDT)
- trajectory of water within 5 A of protein maria goranovic (Tue May 10 2011 - 02:27:58 CDT)
- SASA calculation Aditya Padhi (Mon May 09 2011 - 05:26:36 CDT)
- plotting spin density Olesya Haze (Thu May 05 2011 - 18:17:50 CDT)
- CAVE and Flystick control David Joiner (Wed May 04 2011 - 14:52:34 CDT)
- Fwd: molefacture "force tetrahedral" failure: SOLVED with chimera-vmd Francesco Pietra (Wed May 04 2011 - 02:45:21 CDT)
- molefacture "force tetrahedral" failure Francesco Pietra (Wed May 04 2011 - 01:33:01 CDT)
- Visualization of coarse grained molecule with coarse_grain.tcl Paolo Conflitti (Tue May 03 2011 - 10:10:41 CDT)
- RE: SASA calculation using periodic images? Jesper Srensen (Tue May 03 2011 - 08:38:29 CDT)
- SASA calculation using periodic images? Jesper Sørensen (Tue May 03 2011 - 06:14:31 CDT)
- Cartoons and secondary structure prediction Francisco Jos Taberner Sanchis (Tue May 03 2011 - 05:51:24 CDT)
- Problem with cartoon and secondary structure Francisco Jos Taberner Sanchis (Tue May 03 2011 - 05:13:18 CDT)
- Fwd: Problem with cartoon and secondary structure Francisco Jos Taberner Sanchis (Tue May 03 2011 - 03:26:18 CDT)
- Generate psf file for cyclic peptide Tu.Le_at_csiro.au (Mon May 02 2011 - 22:33:01 CDT)
- desmond trajectory plugin Davide Provasi (Mon May 02 2011 - 10:40:30 CDT)
- VMD Movie Generator problem with "Image smoothing" set Bjoern Olausson (Mon May 02 2011 - 06:26:54 CDT)
- VMD- Ra Measurement Saurav Goel (Sun May 01 2011 - 19:43:28 CDT)
- Reconstruction of XST data from DCD data B.M.B. Vanschouwen (Sun May 01 2011 - 19:29:03 CDT)
- X & Y co-ordinate data ban arn (Sun May 01 2011 - 11:27:39 CDT)
- question regarding H-bond calculation juzer stationwala (Sun May 01 2011 - 10:31:55 CDT)
- Save molecule in pdb format Moutusi Manna (Sat Apr 30 2011 - 01:43:55 CDT)
- Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field DreamCatcher (Fri Apr 29 2011 - 07:48:18 CDT)
- hello kanchi subbarao rao (Fri Apr 29 2011 - 05:58:05 CDT)
- request to know about bonds in between carbon atoms in carbon nanotubes safron saif (Fri Apr 29 2011 - 03:54:53 CDT)
- coloring by gradient Rodolfo Pereyra (Thu Apr 28 2011 - 15:36:51 CDT)
- HOW TO PARAMETRIZE A LIGAND shome sankar bhunia (Thu Apr 28 2011 - 04:53:12 CDT)
- hello kanchi subbarao rao (Thu Apr 28 2011 - 01:38:36 CDT)
- running plugin from the command line Sara Nichols (Wed Apr 27 2011 - 14:49:33 CDT)
- making a movie Moeed (Tue Apr 26 2011 - 17:58:06 CDT)
- RE: RE: New NAMD version 2011-03-03 uses Ada Zhan (Fri Apr 22 2011 - 16:04:52 CDT)
- RE: New NAMD version 2011-03-03 uses Ada Zhan (Fri Apr 22 2011 - 13:35:30 CDT)
- psfgen: error processing bonds Edward Lyman (Fri Apr 22 2011 - 10:03:30 CDT)
- Re: psfgen: error processing bonds John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Tue Apr 26 2011 - 11:43:56 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Tue Apr 26 2011 - 14:21:01 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Fri Apr 29 2011 - 08:00:52 CDT)
- Re: psfgen: error processing bonds Jim Phillips (Fri Apr 29 2011 - 08:12:56 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Fri Apr 29 2011 - 08:40:55 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Fri Apr 29 2011 - 14:30:53 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Fri Apr 29 2011 - 15:11:54 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sat Apr 30 2011 - 10:16:16 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sat Apr 30 2011 - 10:39:47 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Sat Apr 30 2011 - 10:45:17 CDT)
- Re: psfgen: error processing bonds Edward Lyman (Sun May 01 2011 - 16:14:33 CDT)
- Re: psfgen: error processing bonds Axel Kohlmeyer (Sun May 01 2011 - 16:20:45 CDT)
- Re: psfgen: error processing bonds John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 04:10:07 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 11:17:02 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 11:49:02 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 12:15:30 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 13:54:04 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 15:02:48 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 22:53:01 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Fri Apr 22 2011 - 03:52:48 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:37:31 CDT)
- Re: fit dcd is not converging mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- Re: fit dcd is not converging John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- Installation/Upgrade Error Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:57:49 CDT)
- RE: Generating Topo Bond Data from LAMMPS Data File Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:30:52 CDT)
- Generating Topo Bond Data from LAMMPS Data File Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 10:23:29 CDT)
- generating .xsc files using periodic information Neelanjana Sengupta (Wed Apr 20 2011 - 07:06:04 CDT)
- Re: generating .xsc files using periodic information John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Re: generating .xsc files using periodic information Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: generating .xsc files using periodic information Jim Phillips (Tue Apr 26 2011 - 11:35:43 CDT)
- Re: generating .xsc files using periodic information Neelanjana Sengupta (Tue Apr 26 2011 - 23:07:07 CDT)
- Re: generating .xsc files using periodic information Jim Phillips (Tue Apr 26 2011 - 23:16:46 CDT)
- Re: generating .xsc files using periodic information Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: generating .xsc files using periodic information John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Simple Question regarding psf generation Christian Wohlschlager (Tue Apr 19 2011 - 08:09:15 CDT)
- waters selection agustina_at_cabm.rutgers.edu (Mon Apr 18 2011 - 15:49:09 CDT)
- mdf molfile plugin reader atom_type bug Craig Knox (Mon Apr 18 2011 - 13:03:51 CDT)
- compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 00:14:59 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:16:45 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 08:27:05 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:34:54 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 08:45:41 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 08:51:28 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 09:20:16 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 11:16:56 CDT)
- Re: compiling on LINUXAMD64 problem ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Re: compiling on LINUXAMD64 problem Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: Res: webpdb load problem John Stone (Fri Apr 15 2011 - 15:51:38 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st) 3D SIG (Fri Apr 15 2011 - 14:38:03 CDT)
- Replica Exchange alamng_at_uci.edu (Fri Apr 15 2011 - 02:35:05 CDT)
- Question about SASA Sebastian Maximilian Wilhelm (Thu Apr 14 2011 - 10:31:34 CDT)
- Re: using vmd to view gromacs trajectory bharat gupta (Thu Apr 14 2011 - 10:20:29 CDT)
- Recent Geforce Cuda GPU cards(GT 440, GTX 560ti) Burgess, Don E (Wed Apr 13 2011 - 11:26:02 CDT)
- X3DOM sphere resolution Joshua A. Anderson (Wed Apr 13 2011 - 07:09:37 CDT)
- webpdb load problem tiago sobreira (Tue Apr 12 2011 - 13:48:29 CDT)
- moving rotational center to display center Joseph Bylund (Tue Apr 12 2011 - 12:01:27 CDT)
- NMWiz - a new VMD plugin Ahmet Bakan (Tue Apr 12 2011 - 11:51:36 CDT)
- Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 06:14:36 CDT)
- Re: Tcl plugin development and debugging John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 10:38:19 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 10:49:32 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 10:56:17 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 11:21:56 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 11:38:34 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 11:55:16 CDT)
- Re: Tcl plugin development and debugging Axel Kohlmeyer (Tue Apr 12 2011 - 12:05:24 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 12:11:47 CDT)
- Re: Tcl plugin development and debugging Ahmet Bakan (Tue Apr 12 2011 - 11:38:57 CDT)
- RE: Tcl plugin development and debugging Goldsmith, Jacob (Tue Apr 12 2011 - 11:57:28 CDT)
- Re: Tcl plugin development and debugging Anssi Nurminen (Tue Apr 12 2011 - 09:33:01 CDT)
- Re: Tcl plugin development and debugging John Stone (Tue Apr 12 2011 - 09:04:37 CDT)
- trajectory generation using gaussian cube files Vamsee Voora (Mon Apr 11 2011 - 15:53:33 CDT)
- box vectores in .trr leila karami (Sat Apr 09 2011 - 08:44:04 CDT)
- measuring the orientation of a small a-helix Raul Araya (Wed Apr 06 2011 - 16:23:29 CDT)
- electrostatic potential maps. Raul Araya (Wed Apr 06 2011 - 13:13:58 CDT)
- 2D Contour plot ban arn (Wed Apr 06 2011 - 05:06:09 CDT)
- vectors box in .trr file leila karami (Wed Apr 06 2011 - 02:49:24 CDT)
- Transparent image render problem after vmd 1.9 version Bongkeun Kim (Wed Apr 06 2011 - 01:22:21 CDT)
- recenter Mark M Huntress (Sun Apr 03 2011 - 16:34:17 CDT)
- Fwd: (my) problems using molefacture dihedral Francesco Pietra (Sun Apr 03 2011 - 09:14:44 CDT)
- problem on rmsdtt masoud kazemi (Sun Apr 03 2011 - 08:52:22 CDT)
- Fwd: (my) problems using molefacture dihedral Francesco Pietra (Sun Apr 03 2011 - 08:49:53 CDT)
- (my) problems using molefacture dihedral Francesco Pietra (Sat Apr 02 2011 - 15:36:21 CDT)
- Water Models Chathurika Abeyrathne (Sat Apr 02 2011 - 02:43:29 CDT)
- How to create bonds in VMD? Saketh Bharadwaja (Fri Apr 01 2011 - 11:07:21 CDT)
- 访问我的图片 楚霸天下 (Fri Apr 01 2011 - 02:14:16 CDT)
- script problem Mark M Huntress (Thu Mar 31 2011 - 15:32:33 CDT)
- Rotating and saving coordinates of a copy of molecule alongwith original molecule Sujata Sovani (Thu Mar 31 2011 - 13:18:54 CDT)
- Reverse Mapping of RBCG Model Sibel Cakan (Wed Mar 30 2011 - 07:39:51 CDT)
- viewing trajectory Moeed (Tue Mar 29 2011 - 18:44:43 CDT)
- how to mark regions in Multiseq Irene Newhouse (Mon Mar 28 2011 - 19:35:31 CDT)
- Generate a PSF file for small, simple molecules THANH NGUYEN (Mon Mar 28 2011 - 19:11:42 CDT)
- phi-psi plot Ramya Narasimhan (Mon Mar 28 2011 - 05:29:01 CDT)
- Selecting atoms based on 'type' with LAMMPS + PSF Taco de Wolff (Mon Mar 28 2011 - 05:02:10 CDT)
- size of box Moeed (Mon Mar 28 2011 - 01:10:54 CDT)
- Invitation to connect on LinkedIn Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:26:07 CDT)
- Ma Ming wants to stay in touch on LinkedIn Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:21:55 CDT)
- Invitation to connect on LinkedIn ram prasad via LinkedIn (Sun Mar 27 2011 - 12:38:16 CDT)
- How to add iond for RBCG model maming10002000 (Sun Mar 27 2011 - 10:23:27 CDT)
- How to add ions for RBCG maming10002000 (Sun Mar 27 2011 - 09:56:02 CDT)
- Software to create 3D PDF documents Petridis, Loukas (Fri Mar 25 2011 - 14:03:03 CDT)
- Save Coordinates Question ... Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:34:01 CDT)
- Save Coordinates Question ... Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:22:50 CDT)
- how to convert X_PLOR to CHARMM? Lisa Brown (Fri Mar 25 2011 - 11:01:26 CDT)
- CHARMM parameters for Mn 2+ ion Lisa Brown (Fri Mar 25 2011 - 10:43:45 CDT)
- NAMDenergy calculation shome sankar bhunia (Fri Mar 25 2011 - 08:28:50 CDT)
- measure dipole Donovan B.T. (Thu Mar 24 2011 - 13:07:28 CDT)
- Re: measure dipole Axel Kohlmeyer (Thu Mar 24 2011 - 13:53:10 CDT)
- Re: measure dipole Paweł Kędzierski (Fri Mar 25 2011 - 02:55:54 CDT)
- RE: measure dipole Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
- Re: measure dipole John Stone (Fri Mar 25 2011 - 09:11:24 CDT)
- RE: measure dipole Donovan B.T. (Mon Mar 28 2011 - 08:26:36 CDT)
- Re: measure dipole John Stone (Mon Mar 28 2011 - 15:52:54 CDT)
- Re: measure dipole Jernej Zidar (Tue Mar 29 2011 - 02:16:54 CDT)
- RE: measure dipole Donovan B.T. (Wed Mar 30 2011 - 08:16:53 CDT)
- Re: measure dipole Ajasja Ljubetič (Wed Mar 30 2011 - 09:16:21 CDT)
- Re: measure dipole Axel Kohlmeyer (Fri Mar 25 2011 - 09:14:47 CDT)
- RE: measure dipole Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
- How can I operate on multiple .pdb structures in a list Anna Kuznetsova (Wed Mar 23 2011 - 18:49:02 CDT)
- Error starting second VMD Jrme Hnin (Wed Mar 23 2011 - 09:40:20 CDT)
- Re: Error starting second VMD John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
- Re: Error starting second VMD Jrme Hnin (Fri Mar 25 2011 - 04:40:04 CDT)
- Re: Error starting second VMD John Stone (Fri Mar 25 2011 - 09:05:39 CDT)
- Re: Error starting second VMD Jrme Hnin (Fri Mar 25 2011 - 09:19:59 CDT)
- Re: Error starting second VMD John Stone (Mon Mar 28 2011 - 16:04:34 CDT)
- Re: Error starting second VMD Jrme Hnin (Mon Mar 28 2011 - 17:33:59 CDT)
- Re: Error starting second VMD John Stone (Tue Apr 19 2011 - 22:26:56 CDT)
- Re: Error starting second VMD Jrme Hnin (Fri Mar 25 2011 - 04:40:04 CDT)
- Re: Error starting second VMD John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st). 3D SIG (Wed Mar 23 2011 - 06:15:19 CDT)
- Color wheel gradient Jonathan KHAO (Tue Mar 22 2011 - 12:57:08 CDT)
- Fwd: charmmgen to autopsf Francesco Pietra (Tue Mar 22 2011 - 11:03:05 CDT)
- VMD 1.9 builds on MACOSXX86_64 Joshua A. Anderson (Tue Mar 22 2011 - 08:55:00 CDT)
- Fwd: Re: script for projection of c-alpha atom cordinates on xy plane Paweł Kędzierski (Tue Mar 22 2011 - 08:19:14 CDT)
- How to maximize the VMD display window Yingzhe Liu (Tue Mar 22 2011 - 02:10:48 CDT)
- Fwd: charmmgen to autopsf Francesco Pietra (Mon Mar 21 2011 - 07:20:00 CDT)
- charmmgen to autopsf Francesco Pietra (Mon Mar 21 2011 - 05:12:05 CDT)
- Problem with using bigdcd.tcl jnsong (Sun Mar 20 2011 - 22:38:01 CDT)
- ANALYZING DESMOND OUTPUT IN VMD shome sankar bhunia (Sun Mar 20 2011 - 03:55:58 CDT)
- "non-grid" volumetric data Xiaogang Wang (Sat Mar 19 2011 - 01:23:32 CDT)
- script for projection of c-alpha atom cordinates on xy plane ban arn (Fri Mar 18 2011 - 12:58:19 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Joseph Bylund (Fri Mar 18 2011 - 13:39:37 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Paweł Kędzierski (Fri Mar 18 2011 - 15:17:31 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane J. Rui Rodrigues (Mon Mar 21 2011 - 12:12:28 CDT)
- RE: script for projection of c-alpha atom cordinates on xy plane Mark Cunningham (Mon Mar 21 2011 - 13:56:12 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane Paweł Kędzierski (Tue Mar 22 2011 - 04:11:53 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Tue Mar 22 2011 - 05:00:42 CDT)
- RE: script for projection of c-alpha atom cordinates on xy plane Mark Cunningham (Tue Mar 22 2011 - 07:56:34 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
- SV: Authentication error VMD-xplor Robert Dagil (Fri Mar 18 2011 - 10:13:23 CDT)
- Authentication error VMD-xplor Robert Dagil (Fri Mar 18 2011 - 07:46:07 CDT)
- Hbond rendering issue with VMD 1.9 Nicolas Sapay (Fri Mar 18 2011 - 04:58:27 CDT)
- Molden format plugin Ignacio Fernndez Galvn (Thu Mar 17 2011 - 11:12:33 CDT)
- to block the information appearing during the run Ramya Narasimhan (Thu Mar 17 2011 - 06:14:24 CDT)
- Re: .pdbqt file type Francesco Pietra (Thu Mar 17 2011 - 02:38:19 CDT)
- segid & chain id Francesco Pietra (Thu Mar 17 2011 - 02:27:23 CDT)
- calculation of binding energy vani panguluri (Wed Mar 16 2011 - 23:06:45 CDT)
- TCL Callbacks Julia Doh (Wed Mar 16 2011 - 13:45:31 CDT)
- Question about vdW-area Sebastian Maximilian Wilhelm (Wed Mar 16 2011 - 12:40:43 CDT)
- pdb file with different number of molecules Peyman Z.Moghadam (Wed Mar 16 2011 - 12:30:53 CDT)
- .pdbqt file type Francesco Pietra (Wed Mar 16 2011 - 12:15:51 CDT)
- MSD calculation from VMD RMSD plugin. Ranyere Deyler (Wed Mar 16 2011 - 09:24:54 CDT)
- Problem with using bigdcd.tcl jnsong (Tue Mar 15 2011 - 21:42:10 CDT)
- vmd for mac: range in isosurface representation Passerone, Daniele (Tue Mar 15 2011 - 04:34:48 CDT)
- Announce VMD 1.9 released John Stone (Mon Mar 14 2011 - 16:49:37 CDT)
- Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 11:52:49 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Mon Mar 14 2011 - 16:22:58 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:49:11 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 18:08:53 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Fri Mar 18 2011 - 08:55:33 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Fri Mar 18 2011 - 10:13:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Fri Mar 18 2011 - 11:14:31 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Fri Mar 18 2011 - 11:21:56 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins John Stone (Fri Mar 18 2011 - 11:25:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- zero box vector leila karami (Sun Mar 13 2011 - 10:14:49 CDT)
- time line leila karami (Sat Mar 12 2011 - 03:19:52 CST)
- zero box vector leila karami (Sat Mar 12 2011 - 00:50:40 CST)
- count CLA number from different frames emiliawu_at_dicp.ac.cn (Sat Mar 12 2011 - 07:16:32 CST)
- snow leopard CUDA and VMD 1.9 Passerone, Daniele (Fri Mar 11 2011 - 09:29:30 CST)
- tcl script ban arn (Fri Mar 11 2011 - 09:06:00 CST)
- 2 Issues in VMD 1.9 beta3 hanif mahboobi (Fri Mar 11 2011 - 06:10:30 CST)
- problem on making a movie Jun Cheng (Fri Mar 11 2011 - 04:42:34 CST)
- Re: problem on making a movie Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- RE: problem on making a movie Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Re: problem on making a movie Jun Cheng (Fri Mar 11 2011 - 09:36:49 CST)
- Re: problem on making a movie John Stone (Fri Mar 11 2011 - 10:31:21 CST)
- Re: problem on making a movie Jun Cheng (Fri Mar 11 2011 - 12:26:13 CST)
- Re: problem on making a movie John Stone (Fri Mar 11 2011 - 12:37:14 CST)
- Re: problem on making a movie Jun Cheng (Tue Mar 15 2011 - 08:42:09 CDT)
- Re: problem on making a movie John Stone (Tue Mar 15 2011 - 14:14:04 CDT)
- Re: problem on making a movie Jun Cheng (Wed Mar 16 2011 - 18:16:44 CDT)
- RE: problem on making a movie Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Re: problem on making a movie Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- Not calculate bonds by default. Eric Germaneau (Fri Mar 11 2011 - 07:12:04 CST)
- zero box vector leila karami (Thu Mar 10 2011 - 11:27:59 CST)
- psf and top Francesco Oteri (Thu Mar 10 2011 - 09:10:05 CST)
- zero box vector leila karami (Thu Mar 10 2011 - 08:04:14 CST)
- Triclinic boxes in VMD using the LAMMPS file format Taco de Wolff (Thu Mar 10 2011 - 06:36:22 CST)
- Zero box vector leila karami (Thu Mar 10 2011 - 06:11:56 CST)
- tcl script menica dibenedetto (Wed Mar 09 2011 - 08:32:25 CST)
- VMD beta3 windows installer Ajasja Ljubetič (Wed Mar 09 2011 - 08:21:46 CST)
- VMD and Kinect Olaf Lenz (Wed Mar 09 2011 - 05:30:16 CST)
- Extra bond in TIP3 water Julie Grouleff (Wed Mar 09 2011 - 04:56:53 CST)
- ERROR vani panguluri (Wed Mar 09 2011 - 00:11:59 CST)
- how to make default background color to white Sushil Mishra (Tue Mar 08 2011 - 09:11:33 CST)
- measure energy elect vs. NAMDenergy Sebastian Maximilian Wilhelm (Tue Mar 08 2011 - 05:21:10 CST)
- Fwd: Re: namd-l: hBond colvars and patching Francesco Pietra (Tue Mar 08 2011 - 00:34:36 CST)
- VMD 1.9 beta 3 posted for download... John Stone (Mon Mar 07 2011 - 14:53:43 CST)
- Re: VMD 1.9 beta 3 posted for download... Cesar Millan (Mon Mar 07 2011 - 15:47:47 CST)
- Re: (Minnesota Supercomputing Institute Install) VMD 1.9 beta 3 posted for download... nlabello (Tue Mar 08 2011 - 16:00:25 CST)
- request help about hbond hamid mosaddeghi (Mon Mar 07 2011 - 13:20:13 CST)
- Fwd: ACS awards information John Stone (Mon Mar 07 2011 - 10:45:17 CST)
- request help about hbond hamid mosaddeghi (Mon Mar 07 2011 - 09:06:20 CST)
- Re: namd-l: hBond colvars and patching Francesco Pietra (Mon Mar 07 2011 - 00:12:54 CST)
- hBond colvars and patching Francesco Pietra (Sun Mar 06 2011 - 14:05:47 CST)
- Android support Dow Hurst (Sun Mar 06 2011 - 11:24:15 CST)
- hBond component in colvars and patching Francesco Pietra (Sat Mar 05 2011 - 14:38:45 CST)
- view temperature, forces and velocities alberto baldelli (Fri Mar 04 2011 - 09:35:18 CST)
- Re: public VMD cvs server John Stone (Fri Mar 04 2011 - 09:13:10 CST)
- Bug in VMD? Sujata Sovani (Thu Mar 03 2011 - 12:15:16 CST)
- capping or patching protein ends Ashlynne Monroe (Thu Mar 03 2011 - 10:40:37 CST)
- Mutator Plugin Patching Thomas Freeman (Wed Mar 02 2011 - 15:27:21 CST)
- Installing VMD 1.8.7 on i686/SL5 David Huggins (Wed Mar 02 2011 - 07:38:14 CST)
- Error in coordinate information of PDB file after merging nabaneeta mukhopadhyay (Wed Mar 02 2011 - 00:50:42 CST)
- VMD.RC Question Phelan Jr., Frederick R. Dr. (Tue Mar 01 2011 - 14:33:45 CST)
- question about the inorganic builder Mao Mao (Tue Mar 01 2011 - 11:30:53 CST)
- Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:16:18 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:38:20 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:53:49 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:54:55 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Axel Kohlmeyer (Tue Mar 01 2011 - 11:23:36 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 11:28:30 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 11:50:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Axel Kohlmeyer (Tue Mar 01 2011 - 12:33:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 12:32:51 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Wed Mar 02 2011 - 09:40:13 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Wed Mar 02 2011 - 10:07:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Wed Mar 02 2011 - 10:14:31 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Wed Mar 02 2011 - 12:46:57 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Thu Mar 03 2011 - 13:28:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- VMD 1.9 beta 2 posted for download... John Stone (Mon Feb 28 2011 - 21:44:36 CST)
- TCL Related Question Phelan Jr., Frederick R. Dr. (Mon Feb 28 2011 - 21:34:31 CST)
- Can paratools really parametrize a structure? Is it really finished? Ranyere Deyler (Mon Feb 28 2011 - 10:55:21 CST)
- surf fails with TIP4P water in VMD 1.9b1 chris.neale_at_utoronto.ca (Mon Feb 28 2011 - 10:52:08 CST)
- Drawing Bonds in Periodic structure soumyajyoti haldar (Mon Feb 28 2011 - 10:07:32 CST)
- ERROR: graphics: color index value '1057' out of range Jervis Chu (Sun Feb 27 2011 - 08:41:00 CST)
- pot.dx question Robin Varghese (Sat Feb 26 2011 - 15:43:35 CST)
- pot.dx file question Robin Varghese (Sat Feb 26 2011 - 15:42:04 CST)
- Pot.dx files Robin Varghese (Sat Feb 26 2011 - 15:02:14 CST)
- Server for structural models of the unfolded state of proteins Samy Hamdouche (Fri Feb 25 2011 - 19:03:15 CST)
- lindex related question Pavan Ghatty (Fri Feb 25 2011 - 15:09:45 CST)
- showing fixed number of frames as the animation Lin, Kan-Ju (Fri Feb 25 2011 - 13:27:26 CST)
- Paratool`s error reading single point calculation. Ranyere Deyler (Fri Feb 25 2011 - 13:24:42 CST)
- Adding bonds between many metal atoms Qiang Fu (Fri Feb 25 2011 - 09:48:45 CST)
- Fwd: autopsf-patches C++ error 'expected integer but got "" ""' SOLVED, MY FAULT Francesco Pietra (Fri Feb 25 2011 - 07:59:56 CST)
- package psfgen: Failed to set coordinates for C3 Sebastian Maximilian Wilhelm (Fri Feb 25 2011 - 05:30:45 CST)
- Intel HD Graphics and VMD Peixi Zhu (Thu Feb 24 2011 - 22:28:40 CST)
- Using the MovieMaker Phelan Jr., Frederick R. Dr. (Thu Feb 24 2011 - 15:52:28 CST)
- Area per lipid snoze pa (Thu Feb 24 2011 - 12:35:30 CST)
- vmd1.9beta1 Bennion, Brian (Wed Feb 23 2011 - 14:21:51 CST)
- feature request Francesco Oteri (Wed Feb 23 2011 - 15:37:34 CST)
- Re: vmd1.9beta1 Peter Freddolino (Wed Feb 23 2011 - 19:30:06 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Thu Feb 24 2011 - 21:03:43 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Fri Feb 25 2011 - 10:45:04 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Fri Feb 25 2011 - 20:09:45 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Mon Feb 28 2011 - 16:06:28 CST)
- Re: vmd1.9beta1 namdEnergyPlugin Peter Freddolino (Mon Feb 28 2011 - 19:07:10 CST)
- RE: vmd1.9beta1 namdEnergyPlugin Bennion, Brian (Thu Feb 24 2011 - 12:42:02 CST)
- RMSF measurement Alex Liu (Wed Feb 23 2011 - 12:51:16 CST)
- abuot avpos emiliawu_at_dicp.ac.cn (Thu Feb 24 2011 - 00:57:00 CST)
- autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:21:11 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:34:09 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:47:31 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 15:03:16 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 16:54:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Peter Freddolino (Thu Feb 24 2011 - 21:28:18 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' John Stone (Wed Feb 23 2011 - 10:34:09 CST)
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- how to write out the dcd file by vmd python command? mjyang (Mon Feb 21 2011 - 22:09:17 CST)
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- Re: Compiling on Windows John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- Re: Compiling on Windows David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- Re: Compiling on Windows Ajasja Ljubetič (Fri Feb 18 2011 - 04:03:41 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 10:06:44 CST)
- Re: Compiling on Windows Ajasja Ljubetič (Fri Feb 18 2011 - 11:07:59 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 11:51:14 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 11:57:33 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 12:17:38 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 12:29:42 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 15:29:45 CST)
- Re: Compiling on Windows David Joiner (Fri Feb 18 2011 - 22:10:37 CST)
- Re: Compiling on Windows John Stone (Fri Feb 18 2011 - 22:19:44 CST)
- Re: Compiling on Windows David Joiner (Sat Feb 19 2011 - 00:07:25 CST)
- Re: Compiling on Windows David Joiner (Mon Feb 21 2011 - 21:09:09 CST)
- Re: Compiling on Windows John Stone (Mon Feb 21 2011 - 21:28:02 CST)
- Re: Compiling on Windows David Joiner (Mon Feb 21 2011 - 21:42:48 CST)
- Re: Compiling on Windows John Stone (Mon Feb 21 2011 - 21:51:33 CST)
- Re: Compiling on Windows David Joiner (Tue Feb 22 2011 - 22:06:24 CST)
- Re: Compiling on Windows John Stone (Tue Feb 22 2011 - 22:09:56 CST)
- Re: Compiling on Windows David Joiner (Wed Feb 23 2011 - 10:20:35 CST)
- Re: Compiling on Windows John Stone (Wed Feb 23 2011 - 10:31:18 CST)
- Re: Compiling on Windows David Joiner (Wed Feb 23 2011 - 20:30:48 CST)
- Re: Compiling on Windows David Joiner (Wed Mar 23 2011 - 11:14:26 CDT)
- Re: Compiling on Windows John Stone (Thu Mar 24 2011 - 21:38:45 CDT)
- Re: Compiling on Windows David Joiner (Wed Mar 30 2011 - 10:04:46 CDT)
- Re: Compiling on Windows David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- Re: Compiling on Windows John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- VMD Volmap ILS Error & Orient Function larac_at_berkeley.edu (Thu Feb 17 2011 - 12:13:40 CST)
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- Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 16 2011 - 11:21:31 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Vlad Cojocaru (Wed Feb 16 2011 - 15:11:06 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Bjoern Olausson (Thu Feb 17 2011 - 05:37:48 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Joseph Bylund (Fri Feb 18 2011 - 11:19:38 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Fri Feb 18 2011 - 11:54:35 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Peter C. Lai (Tue Feb 22 2011 - 12:39:00 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Tue Feb 22 2011 - 12:45:55 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Peter C. Lai (Tue Feb 22 2011 - 12:51:56 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 23 2011 - 00:11:12 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... Jrme Hnin (Wed Feb 23 2011 - 03:47:20 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 23 2011 - 15:05:00 CST)
- Re: VMD 1.9 beta 1 posted for download... John Stone (Wed Feb 16 2011 - 11:21:31 CST)
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- conflict between VMD and Cygwin Li, Liwei (Mon Feb 14 2011 - 18:02:00 CST)
- setting different bond length for different atom pair Debasis Sengupta (Fri Feb 11 2011 - 12:01:44 CST)
- Re: setting different bond length for different atom pair Axel Kohlmeyer (Fri Feb 11 2011 - 13:00:56 CST)
- Re: only one model is displayed Joyce Tan (Fri Feb 11 2011 - 10:50:31 CST)
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- Re: Fwd: [multiple topology files and resetpsf] Jim Phillips (Tue Feb 08 2011 - 14:49:48 CST)
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- Re: Multiseq in text mode Axel Kohlmeyer (Mon Feb 07 2011 - 19:33:48 CST)
- Re: Multiseq in text mode John Stone (Mon Feb 07 2011 - 20:30:11 CST)
- Re: Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
- Re: Multiseq in text mode Jrme Hnin (Tue Feb 08 2011 - 03:43:39 CST)
- Re: Multiseq in text mode Ekta Khurana (Tue Feb 08 2011 - 08:06:16 CST)
- Re: Multiseq in text mode Leonardo Trabuco (Tue Feb 08 2011 - 08:18:44 CST)
- Re: Multiseq in text mode Anurag Sethi (Tue Feb 08 2011 - 12:11:29 CST)
- Re: Multiseq in text mode Ekta Khurana (Wed Feb 09 2011 - 13:23:19 CST)
- Re: Multiseq in text mode Kirby Vandivort (Tue Feb 08 2011 - 11:49:43 CST)
- Re: Multiseq in text mode Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
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- Re: USING IED for essential dynamics in VMD bharat gupta (Tue Feb 01 2011 - 18:38:39 CST)
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- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 14:19:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Thu Feb 03 2011 - 16:00:11 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST John Stone (Thu Feb 03 2011 - 16:10:24 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
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- Side-chain Dihedrals ban arn (Tue Feb 01 2011 - 05:07:19 CST)
- Re: using IED interface in VMD 1.8.7 windows bharat gupta (Tue Feb 01 2011 - 02:51:45 CST)
- How to use VMD script "PorcupinePlot.tcl" B.M.B. Vanschouwen (Mon Jan 31 2011 - 10:46:55 CST)
- vmd draw command for text kaushik lakkaraju (Sun Jan 30 2011 - 12:32:01 CST)
- CG Builder mohamad rahimi (Sun Jan 30 2011 - 03:31:23 CST)
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- Re: Trouble rendering tranparent atoms with Tachyon Ajasja Ljubeti (Fri Jan 28 2011 - 09:06:11 CST)
- illegal stereo mode Nicolas Belloy (Fri Jan 28 2011 - 08:34:28 CST)
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- RE: How can I add bonds ? Germain Salvato Vallverdu (Thu Jan 27 2011 - 14:31:08 CST)
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- Slower FPS in dual monitor systems? Ramon Crehuet (Thu Jan 27 2011 - 07:24:03 CST)
- removing all water molecules ahmet yldrm (Thu Jan 27 2011 - 06:51:34 CST)
- Re: removing all water molecules Dudo (Thu Jan 27 2011 - 07:40:16 CST)
- Re: removing all water molecules Axel Kohlmeyer (Thu Jan 27 2011 - 08:08:27 CST)
- Re: removing all water molecules Ajasja Ljubetič (Thu Jan 27 2011 - 07:37:57 CST)
- Re: removing all water molecules Joshua Adelman (Thu Jan 27 2011 - 08:24:09 CST)
- Re: removing all water molecules Salvatore Mario Cosseddu (Thu Jan 27 2011 - 09:14:40 CST)
- a problem about multiplot superdirac (Wed Jan 26 2011 - 20:01:18 CST)
- Question regarding g(r) utility Narayanan Veeraraghavan (Wed Jan 26 2011 - 17:30:33 CST)
- GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build Joshua A. Anderson (Wed Jan 26 2011 - 14:17:05 CST)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build John Stone (Wed Jan 26 2011 - 14:31:53 CST)
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- duplicate frames / slow down movie Nicolas Belloy (Tue Jan 25 2011 - 07:50:10 CST)
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- FW: Issues with Paratools and Gaussian Ali, Rejwan (Wed Jan 12 2011 - 11:57:16 CST)
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- Issues with Paratools and Gaussian Ali, Rejwan (Tue Jan 11 2011 - 14:51:18 CST)
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- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:34:33 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:46:10 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:50:24 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:56:41 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:59:21 CST)
- Re: vmd with 3d vision John Stone (Fri Jan 07 2011 - 17:04:27 CST)
- Re: vmd with 3d vision Yubo Fan (Fri Jan 07 2011 - 16:27:31 CST)
- Re: vmd with 3d vision Axel Kohlmeyer (Fri Jan 07 2011 - 16:20:40 CST)
- Re: Binary request Axel Kohlmeyer (Fri Jan 07 2011 - 09:01:48 CST)
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- orientation of protein molecule prabhakar g (Wed Jan 05 2011 - 18:12:19 CST)
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- How to show dynamic bonds? Jervis Chu (Tue Jan 04 2011 - 01:58:39 CST)
- (no subject) Sibel Cakan (Mon Jan 03 2011 - 04:15:23 CST)
- the IR spetra calculation module - from MD trajectory Jun Zhao (Sat Jan 01 2011 - 15:12:48 CST)
- Re: how to make the picture size suitable for the image size in pov file ? Cun Zhang (Fri Dec 31 2010 - 20:08:42 CST)
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- Re: regarding counting water molecules Joshua Adelman (Wed Dec 22 2010 - 07:26:33 CST)
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- "Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA David Brandon (Tue Dec 21 2010 - 14:38:16 CST)
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- Re: selection of amino acids with certain distance each others Axel Kohlmeyer (Sun Dec 19 2010 - 13:59:02 CST)
- Re: selection of amino acids with certain distance each others Ajasja Ljubetič (Sun Dec 19 2010 - 14:07:03 CST)
- Re: selection of amino acids with certain distance each others Joshua Adelman (Sun Dec 19 2010 - 15:00:40 CST)
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- top2psf - bridging_waters.tcl script leila karami (Tue Nov 30 2010 - 00:41:58 CST)
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- RMSD Question snoze pa (Sun Nov 28 2010 - 11:08:25 CST)
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- Problem With No Atoms In Selection David Huggins (Tue Nov 16 2010 - 14:35:20 CST)
- Re: How to Measure Radius of gyration David Wedner (Tue Nov 16 2010 - 13:24:05 CST)
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- Re: Rendering .dat files created from Movie Maker using Tachyon Axel Kohlmeyer (Tue Nov 16 2010 - 10:43:38 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon Eduard Schreiner (Tue Nov 16 2010 - 11:25:07 CST)
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- Re: Headtracking software Ajasja Ljubetič (Tue Nov 16 2010 - 09:00:27 CST)
- Re: Headtracking software Biff Forbush (Tue Nov 16 2010 - 11:01:00 CST)
- Re: Headtracking software Biff Forbush (Tue Nov 16 2010 - 12:37:21 CST)
- Re: Headtracking software John Stone (Tue Nov 16 2010 - 15:23:14 CST)
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- Re: Measure Radius of gyration Eduard Schreiner (Mon Nov 15 2010 - 13:47:16 CST)
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- Interactive MD driver/controller software no longer in beta Axel Kohlmeyer (Fri Nov 12 2010 - 09:41:59 CST)
- vmd-I:Hbonds nataliaperez_at_infomed.sld.cu (Thu Nov 11 2010 - 10:53:57 CST)
- vmd-I:Hbonds nataliaperez_at_infomed.sld.cu (Thu Nov 11 2010 - 08:59:11 CST)
- POV renderer and volume coloring problem Guido Polles (Thu Nov 11 2010 - 05:33:00 CST)
- Ions conversion from atomic model to coarse grained model IJ (Wed Nov 10 2010 - 11:41:41 CST)
- k3b also launches vmd Francesco Pietra (Wed Nov 10 2010 - 03:05:03 CST)
- dynamic atom selection Stephen Cox (Tue Nov 09 2010 - 07:11:58 CST)
- 3D protein visualization quantrum75 (Mon Nov 08 2010 - 12:37:50 CST)
- Graphics card for VMD, number of atoms, file format Prskalo, Alen-Pilip (Mon Nov 08 2010 - 11:38:22 CST)
- Re: Graphics card for VMD, number of atoms, file format Axel Kohlmeyer (Mon Nov 08 2010 - 12:38:46 CST)
- Re: Graphics card for VMD, number of atoms, file format Andrew (Mon Nov 08 2010 - 14:29:07 CST)
- Script for counting water molecules aneesh cna (Mon Nov 08 2010 - 07:06:33 CST)
- Building a membrane from a individual surfactant molecule surendra jain (Mon Nov 08 2010 - 06:27:02 CST)
- fit.tcl divya nayar (Mon Nov 08 2010 - 03:01:14 CST)
- VMD: Ability to add terminal carbonyl oxygen Amor San Juan (Sun Nov 07 2010 - 23:32:20 CST)
- regarding merging of protein and a ligand vani panguluri (Sat Nov 06 2010 - 15:43:13 CDT)
- rgyr calculation problem Branko (Fri Nov 05 2010 - 16:21:05 CDT)
- DCD write/save with a python script David Huggins (Fri Nov 05 2010 - 14:58:18 CDT)
- dtr plugin: does it work for forces traj? Edward Lyman (Fri Nov 05 2010 - 11:03:55 CDT)
- Release of R.E.D. Server 2.0 FyD (Thu Nov 04 2010 - 04:50:36 CDT)
- Web Portal NAMD Job Visualisation...possibilities? Heidi Perrett (Wed Nov 03 2010 - 22:15:38 CDT)
- Regarding merging of two files vani panguluri (Wed Nov 03 2010 - 12:18:16 CDT)
- Running VMD from the terminal on MacBook Pro Steven S Plotkin (Wed Nov 03 2010 - 08:25:15 CDT)
- Asymmetric water molecule Stefan Franzen (Wed Nov 03 2010 - 02:11:22 CDT)
- Text command for isosurface Thomas Steinbrecher (Wed Nov 03 2010 - 01:51:37 CDT)
- rmsd divya nayar (Tue Nov 02 2010 - 11:53:26 CDT)
- vmd: Saving output Christian Jorgensen (Mon Nov 01 2010 - 04:30:03 CDT)
- VMD text mode/unwrap Parisa Akhski (Sun Oct 31 2010 - 19:53:47 CDT)
- Where to download Hbond plugin surendra jain (Sat Oct 30 2010 - 07:52:15 CDT)
- Contour plots for XYZ format Wang Xianqiao (Fri Oct 29 2010 - 23:47:51 CDT)
- vmd: Tcl script help Christian Jorgensen (Fri Oct 29 2010 - 14:06:59 CDT)
- namd-I : Constraint failure in RATTLE algorithm for atom 268 surendra jain (Thu Oct 28 2010 - 23:39:30 CDT)
- PBC wrap on hexagonal periodic cells OPC3_at_pitt.edu (Thu Oct 28 2010 - 12:12:51 CDT)
- Possible bug in freeing global selections Ajasja Ljubetič (Thu Oct 28 2010 - 06:56:02 CDT)
- menus unresponsive in ubuntu 10.10 Andrew Jewett (Thu Oct 28 2010 - 02:42:15 CDT)
- Water mediated hydrogen bond - VMD script ban arn (Tue Oct 26 2010 - 13:31:42 CDT)
- Algorithm for RMSD and alignment Ignacio Fernndez Galvn (Tue Oct 26 2010 - 11:47:18 CDT)
- How to delete a residue Kshatresh Dutta Dubey (Tue Oct 26 2010 - 00:51:45 CDT)
- RDF calculation sarah k (Mon Oct 25 2010 - 10:21:40 CDT)
- Reading MatStudio/ LAMMPS structures to VMD Aric Newton (Sat Oct 23 2010 - 18:45:06 CDT)
- Adding cadmium into protein Joyce Tan (Wed Oct 20 2010 - 01:55:36 CDT)
- problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 10:36:43 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 11:39:47 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:58:00 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 12:03:43 CDT)
- Re: problem at convert single trajectory frame to pdb Axel Kohlmeyer (Tue Oct 19 2010 - 12:53:31 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 21:58:16 CDT)
- Re: problem at convert single trajectory frame to pdb Axel Kohlmeyer (Tue Oct 19 2010 - 22:04:44 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 22:41:27 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 12:35:58 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 12:38:24 CDT)
- Re: problem at convert single trajectory frame to pdb Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Re: problem at convert single trajectory frame to pdb Nicholas Musolino (Tue Oct 19 2010 - 12:10:51 CDT)
- Re: problem at convert single trajectory frame to pdb John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
- Vega ZZ DCD trajectory crashes VMD Ajasja Ljubetič (Tue Oct 19 2010 - 09:21:44 CDT)
- Novint Falcon Christian Wohlschlager (Tue Oct 19 2010 - 07:22:21 CDT)
- PCA analysis of NAMD dcd files surendra jain (Tue Oct 19 2010 - 04:58:47 CDT)
- Best way for model post processing? Steve Jensen (Sun Oct 17 2010 - 23:22:14 CDT)
- Select non-redundant set using struture Qr not working Raul Araya (Sun Oct 17 2010 - 18:52:00 CDT)
- psf format masoumeh ozmaeian (Sun Oct 17 2010 - 02:26:04 CDT)
- Memory leak with "mol modselect" and index TRINH Minh Hieu (Sat Oct 16 2010 - 20:11:16 CDT)
- test masoumeh ozmaeian (Sat Oct 16 2010 - 14:26:58 CDT)
- setenv: Too many arguments Balazs Jojart (Fri Oct 15 2010 - 16:34:52 CDT)
- Bond Colors Brooke Dallas (Wed Oct 13 2010 - 08:46:36 CDT)
- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
- Re: Bond Colors Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
- Re: Bond Colors Eduard Schreiner (Wed Oct 13 2010 - 12:14:46 CDT)
- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 12:38:18 CDT)
- Re: Bond Colors Patrick Burney (Wed Oct 13 2010 - 14:41:43 CDT)
- Re: Bond Colors Brooke Dallas (Thu Oct 14 2010 - 11:37:10 CDT)
- Re: Bond Colors John Stone (Thu Oct 14 2010 - 11:54:04 CDT)
- Re: Bond Colors Axel Kohlmeyer (Thu Oct 14 2010 - 11:58:09 CDT)
- Re: Bond Colors Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
- Re: Bond Colors Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
- IED 2.02 and VMD 1.8.7 Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 08:33:00 CDT)
- Re: IED 2.02 and VMD 1.8.7 Axel Kohlmeyer (Wed Oct 13 2010 - 09:23:19 CDT)
- Re: IED 2.02 and VMD 1.8.7 Hannes Loeffler (Wed Oct 13 2010 - 09:24:33 CDT)
- Selecting by X-coordinate Keith Battle (Tue Oct 12 2010 - 17:31:02 CDT)
- Real-time ambient occlusion lighting Ajasja Ljubetič (Tue Oct 12 2010 - 15:54:00 CDT)
- Combined "Within" atom selection jonathan (Mon Oct 11 2010 - 11:59:08 CDT)
- How to stop a script (eg : source myscript.tcl) ? TRINH Minh Hieu (Mon Oct 11 2010 - 07:34:31 CDT)
- Re: psf gen charmm format Hannes Loeffler (Mon Oct 11 2010 - 07:25:58 CDT)
- Orientation an rotation of molecules in a movie Daniel Hornburg (Sat Oct 09 2010 - 07:26:21 CDT)
- Link Patch? Al-Ali, Hassan (Fri Oct 08 2010 - 23:39:15 CDT)
- Ubiquitin - patch? Al-Ali, Hassan (Thu Oct 07 2010 - 22:33:23 CDT)
- (no subject) Kei Sit (Thu Oct 07 2010 - 21:03:31 CDT)
- patch CT3 and ACE problems in PSFGEN Markus K. Dahlgren (Thu Oct 07 2010 - 15:11:52 CDT)
- missing frames in trajectory file Parisa Akhski (Wed Oct 06 2010 - 17:49:29 CDT)
- membrane_problem lara lara (Wed Oct 06 2010 - 00:29:39 CDT)
- aligning- on top of the bilayer lara lara (Wed Oct 06 2010 - 00:11:00 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:42 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:37 CDT)
- K-linked Ub, ACE patch, and autoPSF Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:34 CDT)
- Query regarding RMSD calculcation hirdesh kumar (Tue Oct 05 2010 - 00:50:32 CDT)
- trouble with measure hbonds Charlotte Siska (Mon Oct 04 2010 - 15:01:36 CDT)
- Loading DCD Frames in Python David Huggins (Sat Oct 02 2010 - 05:16:05 CDT)
- load-traj for three dimensions Stefan Franzen (Fri Oct 01 2010 - 13:35:55 CDT)
- Interaction Energy Using Python David Huggins (Wed Sep 29 2010 - 11:04:25 CDT)
- IR Spectra plugin Agarwal, Silvi (Wed Sep 29 2010 - 10:59:59 CDT)
- Solvent accessible surface area change during MD run hirdesh kumar (Tue Sep 28 2010 - 04:54:14 CDT)
- Check out my photos on Facebook Aneesh Cna (Tue Sep 28 2010 - 04:27:52 CDT)
- Water-mediated hydrogen bonds ban arn (Tue Sep 28 2010 - 04:19:30 CDT)
- missing atoms yan zhang (Mon Sep 27 2010 - 08:42:07 CDT)
- protein breaks into parts after converting trajectory file to pdb file Joyce Tan (Mon Sep 27 2010 - 04:58:48 CDT)
- Experience with Asus Netbook Gianluca Interlandi (Sun Sep 26 2010 - 14:01:40 CDT)
- Re: Experience with Asus Netbook John Stone (Tue Sep 28 2010 - 10:45:08 CDT)
- Re: Experience with Asus Netbook TRINH Minh Hieu (Wed Sep 29 2010 - 12:59:46 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- Re: Re: Experience with Asus Netbook TRINH Minh Hieu (Wed Sep 29 2010 - 16:15:18 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 16:34:24 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 18:38:32 CDT)
- Re: Re: Experience with Asus Netbook Richard Cook (Wed Sep 29 2010 - 16:50:52 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 16:54:50 CDT)
- Re: Re: Experience with Asus Netbook TRINH Minh Hieu (Thu Sep 30 2010 - 01:53:08 CDT)
- Re: Re: Experience with Asus Netbook Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- implicit ligand sampling Marc Zimmer (Sat Sep 25 2010 - 06:26:24 CDT)
- Weird bonds in water box/sphere Sujata Sovani (Fri Sep 24 2010 - 18:51:27 CDT)
- IED/Tkinter problems Birgitte Maria Elisabeth Brydsoe (Fri Sep 24 2010 - 09:13:43 CDT)
- wheris sculptor.tcl Christian Wohlschlager (Fri Sep 24 2010 - 05:39:50 CDT)
- about psfgen patch Zhang, Jiong (MU-Student) (Thu Sep 23 2010 - 09:20:39 CDT)
- Clarification on solvent box sizing Ian Stokes-Rees (Wed Sep 22 2010 - 14:42:30 CDT)
- write pdbs of selected frames of a trajectory Katherine Parra (Wed Sep 22 2010 - 14:05:58 CDT)
- superimpose residues across several protein structures Joyce Tan (Wed Sep 22 2010 - 08:02:18 CDT)
- ppmtompeg Carla Jamous (Wed Sep 22 2010 - 07:52:42 CDT)
- psf gen charmm format Jorgen Simonsen (Wed Sep 22 2010 - 06:18:45 CDT)
- adding a metal ion Joyce Tan (Tue Sep 21 2010 - 20:39:43 CDT)
- Hydrogen bonds ban arn (Tue Sep 21 2010 - 11:17:10 CDT)
- movie rendering on MacOS 10.6 Neelanjana Sengupta (Mon Sep 20 2010 - 10:51:59 CDT)
- ppm files Carla Jamous (Mon Sep 20 2010 - 07:07:52 CDT)
- vmd can't display Pt-Cl bond 程昌利 (Mon Sep 20 2010 - 02:06:38 CDT)
- cg_ionize Sibel Cakan (Sun Sep 19 2010 - 16:37:15 CDT)
- cg ionization Sibel Cakan (Sun Sep 19 2010 - 15:28:14 CDT)
- cg ionization Sibel Cakan (Sun Sep 19 2010 - 15:16:06 CDT)
- minimization changed the occupancy of all atoms to zero Parisa Akhski (Fri Sep 17 2010 - 16:17:11 CDT)
- vmd_pdb file format Ramasamy, Ellankavi (Fri Sep 17 2010 - 11:43:18 CDT)
- vmd display water molecules error Cun Zhang (Fri Sep 17 2010 - 02:37:03 CDT)
- bigdcd + salt-bridge analysis Murpholino Peligro (Thu Sep 16 2010 - 15:31:58 CDT)
- maximum trajectory size? Murpholino Peligro (Thu Sep 16 2010 - 15:19:58 CDT)
- Compatibility with Orcad (PSpice) ? A. M. Carmen Prez (Thu Sep 16 2010 - 05:06:29 CDT)
- Mouse event listener Gianluca Interlandi (Wed Sep 15 2010 - 16:11:41 CDT)
- Mouse event listener Gianluca Interlandi (Wed Sep 15 2010 - 15:20:37 CDT)
- VMD for windows 64-bit Michel Espinoza-Fonseca (Wed Sep 15 2010 - 14:02:02 CDT)
- compile vmd Knut Jrgen Bjuland (Wed Sep 15 2010 - 11:54:17 CDT)
- Draw a box cell for a crystal Germain Vallverdu (Wed Sep 15 2010 - 06:43:35 CDT)
- H-bond life time Nicolas SAPAY (Wed Sep 15 2010 - 03:22:09 CDT)
- Autoionize question for DNA molecule Parisa Akhski (Tue Sep 14 2010 - 17:45:52 CDT)
- vasp POSCAR plugin Tawhid Ezaz (Tue Sep 14 2010 - 17:36:00 CDT)
- Re:vmd_start_problem_in_mac OSX Raman Parkesh (Tue Sep 14 2010 - 12:27:26 CDT)
- turning on the tcl/tk console in .vmdrc Rosanne Zeiler (Tue Sep 14 2010 - 06:18:13 CDT)
- Error encountered when quitting VMD on the Mac Ben Roberts (Mon Sep 13 2010 - 16:55:53 CDT)
- GLXBadLargeRequest and BadLength messages Moulton, Steve (Mon Sep 13 2010 - 15:43:32 CDT)
- phosphorylation modelling Zhang, Jiong (MU-Student) (Mon Sep 13 2010 - 15:11:49 CDT)
- compile windows binary in linux CLEMENTS, ROBERT (Mon Sep 13 2010 - 14:17:51 CDT)
- writepdb append Jacopo Sgrignani (Mon Sep 13 2010 - 05:49:20 CDT)
- Anaglyph rendering problem Ajasja Ljubetič (Mon Sep 13 2010 - 03:50:27 CDT)
- Use of parmtool plugin Christian Wohlschlager (Mon Sep 13 2010 - 01:38:01 CDT)
- Visualization problem with aromatic bromo atom? Meyer-Almes, Franz-Josef, Prof. Dr. (Sun Sep 12 2010 - 13:18:46 CDT)
- vmd.ps ̲ (Sun Sep 12 2010 - 11:14:49 CDT)
- (no subject) ̲ (Sun Sep 12 2010 - 11:12:01 CDT)
- change residue colors? Fatemesadat Emami (Fri Sep 10 2010 - 14:37:23 CDT)
- Distance lines Patargias, George (Thu Sep 09 2010 - 15:24:38 CDT)
- maximum trajectory size? Patrick Burney (Wed Sep 08 2010 - 19:04:38 CDT)
- Loss of VDW upon rendering with POV3 Stefan Oliver (Wed Sep 08 2010 - 14:10:34 CDT)
- two coloring method Tawhid Ezaz (Fri Sep 03 2010 - 17:18:38 CDT)
- problem about dowser Chen, Zhihong (chenz2) (Fri Sep 03 2010 - 16:38:05 CDT)
- Matrix based intermediate rotations Bogdan Costescu (Fri Sep 03 2010 - 05:50:40 CDT)
- Symposium on Accelerating Biology jani vinod (Fri Sep 03 2010 - 00:11:03 CDT)
- Problem with orient.tcl Salvador H-V (Thu Sep 02 2010 - 12:59:38 CDT)
- Best way to bond peptides Sujata Sovani (Wed Sep 01 2010 - 18:30:08 CDT)
- Best way to join two PDB fragments by a peptide bond Sujata Sovani (Wed Sep 01 2010 - 17:36:46 CDT)
- How to set the default mol style as VDW? Eric Grzelak (Wed Sep 01 2010 - 15:07:49 CDT)
- question about Ca-dist.tcl dhacademic (Wed Sep 01 2010 - 10:14:24 CDT)
- paratool error Goutham (Tue Aug 31 2010 - 20:02:30 CDT)
- vmd paratool - getting GAUSSIAN charges Goutham (Tue Aug 31 2010 - 10:51:48 CDT)
- Using Bigdcd with RMSD Trajectory tool in VMD Dan J Martingano (Mon Aug 30 2010 - 14:33:29 CDT)
- creating psf file unni kuttan (Mon Aug 30 2010 - 12:14:15 CDT)
- Faster secondary structure assignment Jrme Hnin (Mon Aug 30 2010 - 11:28:45 CDT)
- paratool doan dung (Sun Aug 29 2010 - 10:04:29 CDT)
- plugin for Abinit output files Rob (Sat Aug 28 2010 - 03:22:05 CDT)
- RMSD trajectory tool Parisa Akhski (Fri Aug 27 2010 - 13:06:40 CDT)
- Hydrogen bond angle hirdesh kumar (Fri Aug 27 2010 - 08:19:29 CDT)
- BB Trace Rex Palmer (Thu Aug 26 2010 - 14:49:39 CDT)
- showing the backbone trace of a cyclic peptide Rex Palmer (Thu Aug 26 2010 - 14:45:33 CDT)
- DCD Based on a parameter Pat Yee (Thu Aug 26 2010 - 09:01:51 CDT)
- vmd - rendering Ramasamy, Ellankavi (Wed Aug 25 2010 - 09:32:14 CDT)
- Re: runsqm plugin required but not installed John Stone (Tue Aug 24 2010 - 17:12:24 CDT)
- hydrophobic accessible surface area Jorgen Simonsen (Tue Aug 24 2010 - 13:55:20 CDT)
- [carlos.simmerling@gmail.com: Re: ACS award information, Oct 15 deadline] John Stone (Tue Aug 24 2010 - 09:48:02 CDT)
- Structure won't move after loading trajectory NG HUI WEN (Mon Aug 23 2010 - 19:40:36 CDT)
- converting old LAMMPS ASCII dumps Dan Lussier (Mon Aug 23 2010 - 19:08:01 CDT)
- OSX 10.6 support? Steve Smith (Mon Aug 23 2010 - 15:32:05 CDT)
- Problem with 'unwrap' Sandra Rennebaum (Mon Aug 23 2010 - 03:44:34 CDT)
- (no subject) Janani.S (Fri Aug 20 2010 - 22:39:10 CDT)
- POPC from charmm27 to charmm36 Raul Araya (Fri Aug 20 2010 - 18:43:00 CDT)
- RMSF calculation: residue wise hirdesh kumar (Fri Aug 20 2010 - 11:22:55 CDT)
- (no subject) yan zhang (Fri Aug 20 2010 - 03:54:47 CDT)
- catdcd usage with Desmond trajectory Irene Newhouse (Thu Aug 19 2010 - 16:19:10 CDT)
- VMD plus Phantom Christian Wohlschlager (Wed Aug 18 2010 - 11:04:42 CDT)
- plugin : membrane builder : "integer value too large to represent" Lepore, Bryan (Wed Aug 18 2010 - 10:21:07 CDT)
- Is it possible to load a part of a big xtc file faster... Alberto Sergio Garay (Wed Aug 18 2010 - 09:44:56 CDT)
- PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha Knut Jrgen Bjuland (Wed Aug 18 2010 - 09:11:21 CDT)
- Re: tcl script Cun Zhang (Wed Aug 18 2010 - 03:25:21 CDT)
- tcl script deepti nayar (Wed Aug 18 2010 - 01:14:06 CDT)
- REMD + RBCG Gregorio Alanislobato (Tue Aug 17 2010 - 16:12:22 CDT)
- RSMD of coarse grained molecules Gregorio Alanislobato (Mon Aug 16 2010 - 12:13:59 CDT)
- workaround for DynamicBonds Georg Spiekermann (Mon Aug 16 2010 - 10:12:10 CDT)
- VMD 3D movies rendering Daniel Hornburg (Mon Aug 16 2010 - 05:07:59 CDT)
- Re: VMD 3D movies rendering Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
- Re: VMD 3D movies rendering John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Tue Aug 17 2010 - 05:43:35 CDT)
- Re: VMD 3D movies rendering John Stone (Tue Aug 17 2010 - 09:39:58 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Tue Aug 17 2010 - 10:50:30 CDT)
- RE: VMD 3D movies rendering Shore, Jay (Tue Aug 17 2010 - 13:34:31 CDT)
- Re: VMD 3D movies rendering John Stone (Tue Aug 17 2010 - 13:47:35 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Wed Aug 18 2010 - 02:17:49 CDT)
- Re: VMD 3D movies rendering John Stone (Wed Aug 18 2010 - 13:53:52 CDT)
- AW: VMD 3D movies rendering Daniel Hornburg (Thu Aug 19 2010 - 03:23:43 CDT)
- Re: VMD 3D movies rendering John Stone (Mon Aug 16 2010 - 11:20:00 CDT)
- Re: VMD 3D movies rendering Axel Kohlmeyer (Mon Aug 16 2010 - 08:40:36 CDT)
- where can I download Tachyon version 0.98.10 ? Cun Zhang (Fri Aug 13 2010 - 23:06:19 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Mon Aug 16 2010 - 04:02:55 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Mon Aug 16 2010 - 11:08:36 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Ian Stokes-Rees (Mon Aug 16 2010 - 12:03:30 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Mon Aug 16 2010 - 12:54:37 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Wed Aug 18 2010 - 00:36:33 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Cun Zhang (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? John Stone (Sat Aug 14 2010 - 23:10:51 CDT)
- Re: where can I download Tachyon version 0.98.10 ? Axel Kohlmeyer (Sat Aug 14 2010 - 08:19:12 CDT)
- "Hands-On" Workshop on Computational Biophysics, November 1-5, 2010 & November 29-December 3, 2010 in Urbana, IL TCBG Workshops (Thu Aug 12 2010 - 17:10:53 CDT)
- Interpreting a contact map Ian Stokes-Rees (Thu Aug 12 2010 - 16:17:12 CDT)
- VMD questions about animating residue distance lines and contact maps Ian Stokes-Rees (Thu Aug 12 2010 - 15:56:18 CDT)
- Solvent Accessible Surface R. Johnson (Thu Aug 12 2010 - 13:26:48 CDT)
- cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 13:21:56 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:37:14 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:48:31 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Thu Aug 12 2010 - 15:00:17 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 15:25:26 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Fri Aug 13 2010 - 12:55:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Fri Aug 13 2010 - 14:30:28 CDT)
- Re: cant connect Novint Falcon with VMD John Stone (Fri Aug 13 2010 - 15:18:58 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Fri Aug 13 2010 - 00:03:51 CDT)
- Re: cant connect Novint Falcon with VMD Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Re: cant connect Novint Falcon with VMD Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- About Atom Index Order Cun Zhang (Wed Aug 11 2010 - 20:59:08 CDT)
- Problem Material Studio/VMD candy deck (Wed Aug 11 2010 - 01:49:55 CDT)
- Solvate plug-in Charles Zhao (Tue Aug 10 2010 - 21:53:22 CDT)
- Writing Python Plugins properly jonathan (Mon Aug 09 2010 - 11:48:25 CDT)
- input file Agnieszka Sobkiewicz (Mon Aug 09 2010 - 06:41:18 CDT)
- ion bead (residue based CG) Demet Akten (Mon Aug 09 2010 - 05:34:26 CDT)
- Superimpose protein - plot water position - visualize water pathway Marc Zimmer (Sat Aug 07 2010 - 19:51:26 CDT)
- upgrading vmd's nvidia component Bob Wohlhueter (Thu Aug 05 2010 - 16:04:53 CDT)
- Inserting amino acids to a protein Gregorio Alanislobato (Thu Aug 05 2010 - 14:24:56 CDT)
- NAMD energy plugin politr_at_huji.ac.il (Thu Aug 05 2010 - 07:41:37 CDT)
- Conversion into POVRay coordinates Nicolas Sapay (Wed Aug 04 2010 - 04:01:20 CDT)
- water molecules shooting during SMD + PDB WRITE ERROR koushik.k (Tue Aug 03 2010 - 06:45:25 CDT)
- povray rendering help Ramasamy, Ellankavi (Fri Jul 30 2010 - 07:45:31 CDT)
- 2D RMSD matrix plot ban arn (Fri Jul 30 2010 - 05:52:02 CDT)
- Focal blur with Tachyon Nicolas Sapay (Fri Jul 30 2010 - 03:13:49 CDT)
- surface rendering across X11 windows David Hoover (Thu Jul 29 2010 - 16:15:48 CDT)
- script to calculate molecular surface area latha (Wed Jul 28 2010 - 12:46:23 CDT)
- Dihedrals Angle ban arn (Wed Jul 28 2010 - 11:43:47 CDT)
- 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 05:50:21 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 07:50:53 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 07:55:33 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 07:59:08 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 08:01:54 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
- "can not find channel named ... Asmaa Elsheshiny (Wed Jul 28 2010 - 04:14:31 CDT)
- multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Tue Jul 27 2010 - 14:37:02 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Tue Jul 27 2010 - 16:54:53 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer John Stone (Wed Jul 28 2010 - 16:23:51 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Kirby Vandivort (Wed Jul 28 2010 - 16:36:10 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer John Stone (Thu Jul 29 2010 - 10:21:11 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Kirby Vandivort (Thu Jul 29 2010 - 10:33:26 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Fri Jul 30 2010 - 13:14:47 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Kirby Vandivort (Fri Jul 30 2010 - 14:30:05 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer John Stone (Wed Jul 28 2010 - 16:23:51 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer Ian Stokes-Rees (Tue Jul 27 2010 - 16:54:53 CDT)
- 2D rmsd plot for C-alpha atoms ban arn (Tue Jul 27 2010 - 10:55:48 CDT)
- install on Centos - issues Joseph Norris (Fri Jul 23 2010 - 18:48:04 CDT)
- VMD XRequest errors Richard Cook (Fri Jul 23 2010 - 18:47:49 CDT)
- Re: VMD XRequest errors John Stone (Tue Jul 27 2010 - 23:58:01 CDT)
- Re: VMD XRequest errors Richard Cook (Wed Jul 28 2010 - 16:39:08 CDT)
- Re: VMD XRequest errors Richard Cook (Wed Jul 28 2010 - 20:15:01 CDT)
- Re: VMD XRequest errors John Stone (Wed Jul 28 2010 - 21:02:30 CDT)
- Re: VMD XRequest errors Richard Cook (Wed Jul 28 2010 - 21:25:21 CDT)
- Re: VMD XRequest errors John Stone (Wed Jul 28 2010 - 21:54:21 CDT)
- Re: VMD XRequest errors Richard Cook (Thu Aug 26 2010 - 17:17:22 CDT)
- Re: VMD XRequest errors John Stone (Fri Aug 27 2010 - 14:23:38 CDT)
- Re: VMD XRequest errors John Stone (Tue Jul 27 2010 - 23:58:01 CDT)
- MDFF Query: how to convert XPLOR style density maps to DX or SITUS format harish vashisth (Fri Jul 23 2010 - 16:28:59 CDT)
- Extra lines shown in trajectories in VMD Elias Ahadi (Wed Jul 21 2010 - 12:26:08 CDT)
- PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file Prskalo, Alen-Pilip (Wed Jul 21 2010 - 02:40:27 CDT)
- Re: PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file Ian Stokes-Rees (Wed Jul 21 2010 - 07:07:51 CDT)
- compilation of vmd 1.8.7 source Vlad Cojocaru (Tue Jul 20 2010 - 09:22:15 CDT)
- Re: compilation of vmd 1.8.7 source John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
- trajectory sort by RMSD or other Thomas C. Bishop (Tue Jul 20 2010 - 12:17:14 CDT)
- Re: trajectory sort by RMSD or other John Stone (Tue Jul 20 2010 - 12:44:38 CDT)
- Re: trajectory sort by RMSD or other Axel Kohlmeyer (Tue Jul 20 2010 - 13:04:57 CDT)
- Re: trajectory sort by RMSD or other Thomas C. Bishop (Tue Jul 20 2010 - 16:51:17 CDT)
- Re: trajectory sort by RMSD or other Axel Kohlmeyer (Tue Jul 20 2010 - 17:17:33 CDT)
- trajectory sort by RMSD or other Thomas C. Bishop (Tue Jul 20 2010 - 12:17:14 CDT)
- Re: compilation of vmd 1.8.7 source Ian Stokes-Rees (Tue Jul 20 2010 - 10:07:45 CDT)
- Re: compilation of vmd 1.8.7 source John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
- lowest energy structure Jorgen Simonsen (Mon Jul 19 2010 - 22:52:59 CDT)
- VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash Ian Stokes-Rees (Mon Jul 19 2010 - 12:10:16 CDT)
- VMD Crashes on Windows Vista when trying to load more than 5000 steps Josiah Zayner (Mon Jul 19 2010 - 09:37:51 CDT)
- Invitation to connect on LinkedIn Deepti Mishra (Mon Jul 19 2010 - 05:57:43 CDT)
- Adding other online PDB data bases to VMD Ian Stokes-Rees (Fri Jul 16 2010 - 18:46:31 CDT)
- Cannot find "cionize plugin" in VMD Parisa Akhski (Fri Jul 16 2010 - 14:26:59 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
- RE: Cannot find "cionize plugin" in VMD Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 12:42:15 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 14:09:37 CDT)
- RE: Cannot find "cionize plugin" in VMD Parisa Akhski (Wed Jul 21 2010 - 13:31:39 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Wed Jul 21 2010 - 16:22:05 CDT)
- RE: Cannot find "cionize plugin" in VMD Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
- Re: Cannot find "cionize plugin" in VMD John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
- making a movie of an unusual trajectory Edward Lyman (Fri Jul 16 2010 - 11:54:47 CDT)
- Building VMD on OS X 10.6 with Python and CUDA support Ian Stokes-Rees (Thu Jul 15 2010 - 22:44:34 CDT)
- Adding Single Residues to a Protein Anwaar Al-Zireeni (Thu Jul 15 2010 - 18:34:56 CDT)
- locating or creating a .vmdsensors file for windows VMD Jeffrey Sanders (Wed Jul 14 2010 - 12:42:02 CDT)
- using tcl variables in representation gui Robert Wohlhueter (Wed Jul 14 2010 - 09:22:09 CDT)
- Graphics Representation - Drawing methods puroorava annapaneni (Tue Jul 13 2010 - 17:39:06 CDT)
- Question about vrpn server build for using Phantom with VMD Jeffrey Sanders (Tue Jul 13 2010 - 15:05:58 CDT)
- Native contacts trajectory tool available Toni Giorgino (Tue Jul 13 2010 - 14:09:49 CDT)
- VMD cuda Raul Araya (Mon Jul 12 2010 - 15:59:19 CDT)
- Autoionize question for DNA molecule Parisa Akhski (Mon Jul 12 2010 - 10:10:11 CDT)
- contact map for Protein-DNA interaction atila petrosian (Mon Jul 12 2010 - 02:19:13 CDT)
- ILS tool fails Aaron Oakley (Fri Jul 09 2010 - 20:25:38 CDT)
- DPPC jouko_at_uchicago.edu (Thu Jul 08 2010 - 22:21:25 CDT)
- Modifying amino acid to a non-standard amino acid using VMD (proline to hydroxyproline) Sujata Sovani (Thu Jul 08 2010 - 19:05:55 CDT)
- Install VMD on intel i5 moacyr comar (Wed Jul 07 2010 - 12:00:18 CDT)
- contact map for protein-dna interaction leila karami (Wed Jul 07 2010 - 03:32:51 CDT)
- Release of the R.E.D.-III.4 tools FyD (Wed Jul 07 2010 - 02:04:36 CDT)
- Selecting basic residues in g(r) GUI Plugin Rabab Toubar (Tue Jul 06 2010 - 10:47:06 CDT)
- Autoionize does not neutralize the system Parisa Akhski (Tue Jul 06 2010 - 09:16:20 CDT)
- color charmm dcd by kinetic energy Ardy Davari (Mon Jul 05 2010 - 15:59:22 CDT)
- contact map leila karami (Mon Jul 05 2010 - 09:46:04 CDT)
- contact map leila karami (Mon Jul 05 2010 - 09:12:47 CDT)
- contact map leila karami (Mon Jul 05 2010 - 08:33:23 CDT)
- Conversion of DCD trajectories to AMBER ones ? Marek Maly (Mon Jul 05 2010 - 05:06:40 CDT)
- RGB values... Luis Guillermo Cota Preciado (Thu Jul 01 2010 - 18:10:10 CDT)
- Sasa implentation/ algorithm VMD henri mone (Thu Jul 01 2010 - 17:19:06 CDT)
- Re: Tachyon Rendering with a Surf Representation jamesgiacmo_at_aol.com (Wed Jun 30 2010 - 08:29:39 CDT)
- getting python to work Seth Burleigh (Tue Jun 29 2010 - 11:20:09 CDT)
- Tachyon Rendering with a Surf Representation jamesgiacmo_at_aol.com (Tue Jun 29 2010 - 10:12:11 CDT)
- VMD / Tachyon Questions Andrew (Sun Jun 27 2010 - 19:27:21 CDT)
- Re: namd-l: Simulation configuration file not accesible Ajasja Ljubetič (Fri Jun 25 2010 - 16:19:34 CDT)
- stereo problem with vmd Osmany Guirola Cruz (Fri Jun 25 2010 - 06:58:06 CDT)
- VMD 1.8.7 and NVIDIA 256.35 driver problems (CUDA issue?) ben rodriguez (Thu Jun 24 2010 - 14:29:18 CDT)
- Add/Remove Bonds Rabab Toubar (Thu Jun 24 2010 - 12:27:20 CDT)
- vmd on Microsoft 2000 and Phantom Christian Wohlschlager (Tue Jun 22 2010 - 07:51:03 CDT)
- Fwd: convert prmtop to psf Lai zaizhi (Mon Jun 21 2010 - 16:42:10 CDT)
- Re: convert prmtop to psf Lai zaizhi (Mon Jun 21 2010 - 16:41:37 CDT)
- Re: Re: convert prmtop to psf John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
- Re: Re: convert prmtop to psf Lai zaizhi (Mon Jun 21 2010 - 17:33:07 CDT)
- Re: Re: convert prmtop to psf John Stone (Tue Jun 22 2010 - 11:27:49 CDT)
- Re: Re: convert prmtop to psf Lai zaizhi (Tue Jun 22 2010 - 11:54:56 CDT)
- Re: Re: convert prmtop to psf Lai zaizhi (Tue Jun 22 2010 - 12:22:16 CDT)
- Re: Re: convert prmtop to psf John Stone (Tue Jun 22 2010 - 13:58:14 CDT)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Tue Jun 22 2010 - 14:01:36 CDT)
- Re: Re: convert prmtop to psf Wei Huang (Tue Feb 01 2011 - 16:22:28 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Tue Feb 01 2011 - 17:41:31 CST)
- Re: Re: convert prmtop to psf Wei Huang (Tue Feb 01 2011 - 22:04:07 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Wed Feb 02 2011 - 09:26:32 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Wed Feb 02 2011 - 15:45:16 CST)
- Re: Re: convert prmtop to psf Axel Kohlmeyer (Mon Jun 21 2010 - 17:25:22 CDT)
- Re: Re: convert prmtop to psf John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
- AutoPSF errors Emily Chen (Mon Jun 21 2010 - 14:06:19 CDT)
- Re: AutoPSF errors Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
- OpenGL Display slow/freeze Yangyang Shen (Mon Jun 21 2010 - 22:08:11 CDT)
- Re: OpenGL Display slow/freeze Axel Kohlmeyer (Mon Jun 21 2010 - 22:52:13 CDT)
- Re: OpenGL Display slow/freeze Yangyang Shen (Tue Jun 22 2010 - 08:34:40 CDT)
- Re: OpenGL Display slow/freeze John Stone (Tue Jun 22 2010 - 09:00:38 CDT)
- Re: OpenGL Display slow/freeze Axel Kohlmeyer (Tue Jun 22 2010 - 08:45:15 CDT)
- Re: OpenGL Display slow/freeze John Stone (Mon Jun 21 2010 - 22:43:38 CDT)
- Re: OpenGL Display slow/freeze Yangyang Shen (Tue Jun 22 2010 - 08:09:59 CDT)
- Re: OpenGL Display slow/freeze John Stone (Tue Jun 22 2010 - 08:54:46 CDT)
- Re: OpenGL Display slow/freeze Emily Chen (Tue Jun 22 2010 - 13:51:37 CDT)
- Re: OpenGL Display slow/freeze Emily Chen (Tue Jun 22 2010 - 13:53:30 CDT)
- Re: AutoPSF errors Peter Freddolino (Tue Jun 22 2010 - 20:16:06 CDT)
- OpenGL Display slow/freeze Yangyang Shen (Mon Jun 21 2010 - 22:08:11 CDT)
- Re: AutoPSF errors Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
- Cannot read MSMS data files Jayne Wallace (Mon Jun 21 2010 - 09:12:07 CDT)
- namdenergy: writepdb failed Neelanjana Sengupta (Sun Jun 20 2010 - 06:27:02 CDT)
- structure file for big molecules Moeed (Fri Jun 18 2010 - 21:19:02 CDT)
- Hydrophobic interaction ban arn (Fri Jun 18 2010 - 06:53:37 CDT)
- Hydrophobic interaction ban arn (Fri Jun 18 2010 - 05:59:43 CDT)
- -samples flag of measure sasa Edward Lyman (Thu Jun 17 2010 - 11:47:34 CDT)
- Workshop on GPU Programming for Molecular Modeling, August 6-8, 2010, at the Beckman Institute in Urbana, Illinois TCBG Workshops (Fri Jun 11 2010 - 17:28:26 CDT)
- vmd crash at start Bogdan Tarus (Thu Jun 17 2010 - 10:33:35 CDT)
- Invalid command name "His" during Solvation Michael LeVine (Thu Jun 17 2010 - 09:10:52 CDT)
- Color by velocity (speed?) Ardy Davari (Wed Jun 16 2010 - 12:04:04 CDT)
- solvate nonstandard patch error Harold Hatch (Wed Jun 16 2010 - 10:42:50 CDT)
- visualize trajectories from lammps parallel results shiziyuan (Tue Jun 15 2010 - 15:44:58 CDT)
- particular set of xyz coordinates in PDB causes seg fault Daniel Farrell (Tue Jun 15 2010 - 12:16:58 CDT)
- AutoPSF deleting residues Kelly Leung (Tue Jun 15 2010 - 10:35:38 CDT)
- Re: Grid spacing in mdff Leonardo Trabuco (Tue Jun 15 2010 - 02:54:08 CDT)
- Gradient Background Vikas Varshney (Mon Jun 14 2010 - 15:13:26 CDT)
- Change only the CA coordinates in a pdb file via tcl Mert Gr (Mon Jun 14 2010 - 14:26:14 CDT)
- top2psf.tcl Rabab Toubar (Sun Jun 13 2010 - 05:59:28 CDT)
- Re: top2psf.tcl Axel Kohlmeyer (Sun Jun 13 2010 - 07:19:12 CDT)
- Re: top2psf.tcl Rabab Toubar (Tue Jun 15 2010 - 08:21:19 CDT)
- Re: top2psf.tcl Rabab Toubar (Tue Jun 15 2010 - 10:14:14 CDT)
- Re: top2psf.tcl Axel Kohlmeyer (Tue Jun 15 2010 - 10:31:42 CDT)
- topotools Rabab Toubar (Tue Jun 15 2010 - 11:22:55 CDT)
- Re: topotools Axel Kohlmeyer (Tue Jun 15 2010 - 11:31:40 CDT)
- Re: topotools Rabab Toubar (Tue Jun 15 2010 - 11:57:12 CDT)
- Re: topotools Axel Kohlmeyer (Tue Jun 15 2010 - 12:00:00 CDT)
- saving a GMX trajectory using tcl script Rabab Toubar (Wed Jun 16 2010 - 07:21:00 CDT)
- Re: saving a GMX trajectory using tcl script John Stone (Thu Jun 17 2010 - 14:43:00 CDT)
- Re: top2psf.tcl Axel Kohlmeyer (Sun Jun 13 2010 - 07:19:12 CDT)
- Rending to png format using tachyon or otherwise ? maria goranovic (Wed Jun 09 2010 - 09:33:25 CDT)
- topotools and Partial charges Michael Doig (Wed Jun 09 2010 - 05:25:25 CDT)
- about vmd solvation plugin David Li (Sat Jun 05 2010 - 18:31:36 CDT)
- visualizing small molecule in a trajectory file .trr and .gro using VMD Hassan Shallal (Fri Jun 04 2010 - 22:49:33 CDT)
- Trouble compiling from source - Mac OS X Reid Van Lehn (Fri Jun 04 2010 - 11:36:54 CDT)
- Retrieving the Cremer-Pople parameters Nicolas Sapay (Fri Jun 04 2010 - 03:46:30 CDT)
- Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 02:32:23 CDT)
- Re: Problems with Linux install... John Stone (Fri Jun 04 2010 - 08:37:54 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 10:19:01 CDT)
- Re: Problems with Linux install... John Stone (Fri Jun 04 2010 - 16:19:09 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Mon Jun 07 2010 - 00:17:58 CDT)
- Re: Problems with Linux install... John Stone (Wed Jun 09 2010 - 16:17:18 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Wed Jun 09 2010 - 18:35:18 CDT)
- Re: Problems with Linux install... Axel Kohlmeyer (Wed Jun 09 2010 - 21:26:53 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 10:19:01 CDT)
- Re: Problems with Linux install... Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 13:30:30 CDT)
- Re: Problems with Linux install... John Stone (Fri Jun 04 2010 - 08:37:54 CDT)
- about ".cpmd" format Liu (Thu Jun 03 2010 - 22:31:58 CDT)
- about paratool Francesco Pietra (Thu Jun 03 2010 - 02:50:05 CDT)
- Has anyone done ILS successfully? Irene Newhouse (Wed Jun 02 2010 - 14:39:36 CDT)
- CAN ANY ONE HELP ME vani panguluri (Wed Jun 02 2010 - 10:09:08 CDT)
- Interaction Energy ban arn (Wed Jun 02 2010 - 07:29:38 CDT)
- Visualize intersection of overlapping spheres? Bjoern Olausson (Wed Jun 02 2010 - 06:51:56 CDT)
- psfgen plugin sriteja mantha (Wed Jun 02 2010 - 05:23:51 CDT)
- Bug in VMD-1.8.7 multiseq functionality genie lfs (Wed Jun 02 2010 - 04:54:48 CDT)
- RMSD Trajectory Tool Philip Peartree (Tue Jun 01 2010 - 20:33:54 CDT)
- Compiling without graphics Philip Peartree (Tue Jun 01 2010 - 20:31:18 CDT)
- Deleting/modifying specific molecule representations Bob Johnson (Tue Jun 01 2010 - 11:23:58 CDT)
- Mol2 with Charmm atom types? Edelmiro Moman (Mon May 31 2010 - 04:45:51 CDT)
- Residue Number Assignment by VMD Sally Fisher (Fri May 28 2010 - 07:29:55 CDT)
- RDF and Coordination Number Amir Hajiahmadi Farmahini (Fri May 28 2010 - 05:40:15 CDT)
- APBS plugin Sladjana Maric (Thu May 27 2010 - 18:16:15 CDT)
- pbc wrap Salvador H-V (Thu May 27 2010 - 17:35:54 CDT)
- Modelling program that does hydrogen adjust Jennifer Williams (Thu May 27 2010 - 10:21:49 CDT)
- Tcl-wrapped "lightweight plugin" in C++ Jrme Hnin (Thu May 27 2010 - 07:27:00 CDT)
- Residue Ordering in Sequence Viewer/MultiSeq Sally Fisher (Wed May 26 2010 - 10:15:20 CDT)
- radial distribution function problem Hyun Tae Jung (Wed May 26 2010 - 08:42:48 CDT)
- Problem with display on Intel graphics card Tim Travers (Tue May 25 2010 - 17:29:09 CDT)
- parameter file for CHARMM matziast_at_med.uth.gr (Tue May 25 2010 - 16:03:33 CDT)
- monomer transposes boundary box Hugo Gutirrez de Teran (Tue May 25 2010 - 06:48:04 CDT)
- Tachyon 0.9.10 and recommende version of cuda? Knut Jrgen Bjuland (Mon May 24 2010 - 05:10:37 CDT)
- LAMMPS Trajectory Moslem Sabouri (Sun May 23 2010 - 04:46:17 CDT)
- generating PSF file for a small molecule Hassan Shallal (Sun May 23 2010 - 03:53:58 CDT)
- Atom Selection for RDF Amir Hajiahmadi Farmahini (Sat May 22 2010 - 09:19:18 CDT)
- Re: namd-l: Error in running minimization Joshua Adelman (Fri May 21 2010 - 07:56:06 CDT)
- Cutting a bond Francesco Pietra (Wed May 19 2010 - 13:52:18 CDT)
- Frames-Movie Salvador H-V (Wed May 19 2010 - 11:54:32 CDT)
- Adding an atom to the existing pdb Narasimhan LOGANATHAN (Wed May 19 2010 - 05:18:22 CDT)
- LANG setting needs to be solved in next release.... Rob (Tue May 18 2010 - 19:33:06 CDT)
- compile error Liu Shiyong (Tue May 18 2010 - 04:40:12 CDT)
- adding water box Hao Sun (Mon May 17 2010 - 19:09:57 CDT)
- adding water box Hao Sun (Mon May 17 2010 - 19:09:36 CDT)
- Radial distribution function: "y" axis martin klvana (Sun May 16 2010 - 12:39:54 CDT)
- append pdb politr_at_huji.ac.il (Sun May 16 2010 - 09:48:19 CDT)
- Xrequest in VMD Mantzalis, Dimitrios (Wed May 12 2010 - 06:03:28 CDT)
- Recenter membrane bilayer to unit cell Mhlbacher, Markus (Wed May 12 2010 - 03:37:13 CDT)
- Selecting CUDA devices in VMD 1.8.7 Joakim Swedberg (Tue May 11 2010 - 17:49:54 CDT)
- units of "measure dipole" Edward Lyman (Tue May 11 2010 - 14:47:45 CDT)
- Atom movement within a range of Z value muniyamuthu.raviprasad_at_ndsu.edu (Tue May 11 2010 - 14:47:15 CDT)
- regarding fit_angle.tcl jani vinod (Tue May 11 2010 - 07:04:20 CDT)
- namd gui problem sarah k (Tue May 11 2010 - 02:29:02 CDT)
- LAMMPS trajectory file Anna Ceguerra (Mon May 10 2010 - 21:12:28 CDT)
- Creating AVI movies David Poger (Mon May 10 2010 - 07:28:24 CDT)
- Stereoscopic visualization Emiliano Ippoliti (Sun May 09 2010 - 10:58:46 CDT)
- adding atomselections? Fatemesadat Emami (Sat May 08 2010 - 18:28:48 CDT)
- How to remove hydrogens from a pdb file? Francesca Ricci-Tam (Thu May 06 2010 - 23:17:19 CDT)
- G(r) tcl script not including intramolecular correlations Hall, Lisa Michelle (Thu May 06 2010 - 18:12:49 CDT)
- selecting from different molecules simultaneously Fatemesadat Emami (Wed May 05 2010 - 18:35:26 CDT)
- problem with "animate delete all" Wei Chen (Tue May 04 2010 - 17:07:54 CDT)
- Re: drawing a length scale on the vmd display maria goranovic (Tue May 04 2010 - 03:56:00 CDT)
- drawing a length scale on the vmd display maria goranovic (Tue May 04 2010 - 03:01:07 CDT)
- animation with variable number/names of atoms Maxim Paliy. (Mon May 03 2010 - 09:10:58 CDT)
- Using RMSD in colvar Stefan Franzen (Mon May 03 2010 - 08:48:10 CDT)
- Follow-up to PME question Stefan Franzen (Sun May 02 2010 - 16:54:06 CDT)
- Question Regarding PME Set-up Stefan Franzen (Sun May 02 2010 - 16:48:20 CDT)
- ellipsoidal particles Germain Vallverdu (Sun May 02 2010 - 14:10:43 CDT)
- Tachyon? Fatemesadat Emami (Fri Apr 30 2010 - 11:41:25 CDT)
- choice of VDW radius Nicolas Floquet (Fri Apr 30 2010 - 02:43:58 CDT)
- paratools charmm partial charges Corey Fugate (Thu Apr 29 2010 - 23:30:19 CDT)
- VMD: set light coordinates Nicolas Floquet (Thu Apr 29 2010 - 02:48:16 CDT)
- Paratools Question Corey Fugate (Wed Apr 28 2010 - 23:17:39 CDT)
- topotools Chenchen Wang (Wed Apr 28 2010 - 00:19:21 CDT)
- Is nvidia 3D Vision + quadro working in linux ben rodriguez (Tue Apr 27 2010 - 17:16:48 CDT)
- merge structure : It is working muniyamuthu.raviprasad_at_ndsu.edu (Tue Apr 27 2010 - 10:26:45 CDT)
- Run Python Scripts in VMD on Mac OS X Burkhard Heil (Tue Apr 27 2010 - 06:52:50 CDT)
- representation question Joseph Bylund (Mon Apr 26 2010 - 14:01:40 CDT)
- Conversion of GAMESS Quantum MD trajectory file Diego Javier Alonso de Armio (Mon Apr 26 2010 - 13:59:49 CDT)
- merge structure: error processing angles muniyamuthu.raviprasad_at_ndsu.edu (Fri Apr 23 2010 - 17:36:32 CDT)
- Symmetry Tool Error (Draw): invalid command name "getargs" and expected integer but got "" Mario Saavedra (Fri Apr 23 2010 - 16:41:06 CDT)
- VRPN driver for Novint Falcon haptic device available - Looking for Testers Axel Kohlmeyer (Fri Apr 23 2010 - 15:59:34 CDT)
- Problems with licorice representation when rendering 3D PDF for Power Point Bob Johnson (Thu Apr 22 2010 - 14:56:52 CDT)
- Coloring atoms based on timeframe range? Bjoern Olausson (Thu Apr 22 2010 - 08:51:34 CDT)
- Re: namd-l: building a MARTINI bilayer Peter Freddolino (Wed Apr 21 2010 - 13:16:00 CDT)
- High quality movies, bmp frames and videomach=poor quality Jennifer Williams (Wed Apr 21 2010 - 05:57:11 CDT)
- Fwd: High quality movies, bmp frames and videomach=poor quality Jennifer Williams (Wed Apr 21 2010 - 05:56:33 CDT)
- Fragments Olaf Lenz (Wed Apr 21 2010 - 03:19:04 CDT)
- Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Tue Apr 20 2010 - 14:04:31 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Tue Apr 20 2010 - 18:02:23 CDT)
- Re: Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Tue Apr 20 2010 - 20:04:05 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Wed Apr 21 2010 - 07:56:35 CDT)
- Re: Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Wed Apr 21 2010 - 08:06:07 CDT)
- Re: Problem with creation of child fragment in Molefacture Yongmei Pan (Wed Apr 21 2010 - 09:15:57 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Wed Apr 21 2010 - 09:51:35 CDT)
- Re: Problem with creation of child fragment in Molefacture Alexandre Suman de Araujo (Tue Apr 20 2010 - 20:04:05 CDT)
- Re: Problem with creation of child fragment in Molefacture Peter Freddolino (Tue Apr 20 2010 - 18:02:23 CDT)
- rmsd trajectory tool question Joseph Bylund (Tue Apr 20 2010 - 13:23:07 CDT)
- run_vmd_tmp: Permission denied adil mughal (Tue Apr 20 2010 - 10:37:09 CDT)
- pbc and measure hbond yongpingzeng (Tue Apr 20 2010 - 10:11:38 CDT)
- pbc and measure hbond yongpingzeng (Tue Apr 20 2010 - 10:07:29 CDT)
- vmd does not read pqr file correct, vmd parse chain information incorrect. Knut Jrgen Bjuland (Tue Apr 20 2010 - 09:58:35 CDT)
- vmd does not read pqr file correct, vmd parse chain information incorrect. Knut Jrgen Bjuland (Tue Apr 20 2010 - 09:53:57 CDT)
- Re: vmd-l digest V1 #1583 Nicholas Musolino (Sun Apr 18 2010 - 20:14:36 CDT)
- Load and change representation? Fatemesadat Emami (Sat Apr 17 2010 - 16:51:53 CDT)
- Problem with vmd and pqr file Knut Jrgen Bjuland (Sat Apr 17 2010 - 13:51:13 CDT)
- RE : pbc tools in vmd for simulation bharat gupta (Sat Apr 17 2010 - 08:40:16 CDT)
- problem about running chiloo777 777 (Sat Apr 17 2010 - 01:54:41 CDT)
- Load and change representation? Fatemesadat Emami (Fri Apr 16 2010 - 23:37:32 CDT)
- Resonable visualisation of the molecules inside the periodic box ? Marek Maly (Fri Apr 16 2010 - 09:59:50 CDT)
- Colouring atoms named with the same first letter Jennifer Williams (Fri Apr 16 2010 - 08:15:07 CDT)
- Re: Colouring atoms named with the same first letter Joshua Anderson (Fri Apr 16 2010 - 11:09:23 CDT)
- Re: Colouring atoms named with the same first letter John Stone (Fri Apr 16 2010 - 16:42:22 CDT)
- Re: Colouring atoms named with the same first letter Jennifer Williams (Tue Apr 20 2010 - 10:13:04 CDT)
- recognizing TCL variables in a matrix argument Ronald Salesky (Thu Apr 15 2010 - 16:06:56 CDT)
- Re: recognizing TCL variables in a matrix argument Axel Kohlmeyer (Thu Apr 15 2010 - 19:45:15 CDT)
- mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) Andrew M. Simms (Fri Apr 16 2010 - 11:30:09 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 17:00:15 CDT)
- RE: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) Andrew M. Simms (Fri Apr 16 2010 - 17:48:11 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 18:10:22 CDT)
- RE: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) Andrew M. Simms (Fri Apr 16 2010 - 18:18:16 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 18:22:20 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) John Stone (Fri Apr 16 2010 - 17:00:15 CDT)
- how to download & install QMTool plugin Russell, John Thomas (Wed Apr 14 2010 - 09:33:33 CDT)
- how to pick certain water molecular from a .mdcrd ѩ Pang Xueqin (Tue Apr 13 2010 - 01:37:16 CDT)
- VMD has problem displaying glsl rendermode Euclid Sun (Mon Apr 12 2010 - 09:04:29 CDT)
- calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Mon Apr 12 2010 - 03:43:25 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Mon Apr 12 2010 - 06:38:16 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 08:08:08 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Mon Apr 12 2010 - 08:45:13 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 08:58:28 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Mon Apr 12 2010 - 12:36:36 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Mon Apr 12 2010 - 14:24:17 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Tue Jun 29 2010 - 09:14:08 CDT)
- Re: calculate side-chain dihedral/torsion angles Ajasja Ljubetič (Mon Apr 12 2010 - 06:38:16 CDT)
- Re: calculate side-chain dihedral/torsion angles Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
- Andres Morales sent you a little gift Andres Morales (Sun Apr 11 2010 - 20:33:52 CDT)
- DynamicBonding Ziemys, Arturas (Fri Apr 09 2010 - 14:10:56 CDT)
- regarding installation Asfa Ali (Fri Apr 09 2010 - 10:45:45 CDT)
- AutoHotkey script for managing VMD windows Ajasja Ljubetič (Fri Apr 09 2010 - 07:56:42 CDT)
- Turn off initial VMD animation and "menu tkcon on" problem Ajasja Ljubetič (Fri Apr 09 2010 - 07:18:57 CDT)
- build dependency Knut Jrgen Bjuland (Fri Apr 09 2010 - 02:28:48 CDT)
- question about vmd use Knut Jrgen Bjuland (Fri Apr 09 2010 - 02:26:32 CDT)
- creating and appending to DCD in VMD Nicholas Musolino (Thu Apr 08 2010 - 15:50:04 CDT)
- Hydrogen bonds plugin obscures charged atoms -- help! Hurt, Darrell (NIH/NIAID) [E] (Thu Apr 08 2010 - 11:48:39 CDT)
- Rotating the current view Muhammet smet Treh Balta (Thu Apr 08 2010 - 11:10:17 CDT)
- center of unit cell Yinglong Miao (Thu Apr 08 2010 - 10:10:17 CDT)
- problem with IED: 'numpy.ndarray' object has no attribute 'typecode' J. Rui Rodrigues (Wed Apr 07 2010 - 14:01:37 CDT)
- Way to change ColorScale Method to single color gradient? Bjoern Olausson (Wed Apr 07 2010 - 03:33:18 CDT)
- problems with hotkeys and "user add key" command Rocchia Walter (Mon Apr 05 2010 - 16:31:03 CDT)
- NAMD energy plugin question Rachel Ruskin (Mon Apr 05 2010 - 12:02:44 CDT)
- Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 08:58:55 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 09:52:55 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 11:33:46 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 11:56:07 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 14:06:38 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 14:30:21 CDT)
- Re: Generating nanotubes psf file Ronald Salesky (Mon Apr 05 2010 - 14:33:44 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 15:47:24 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 16:05:34 CDT)
- Re: Generating nanotubes psf file Ranyere Deyler (Mon Apr 05 2010 - 11:33:46 CDT)
- Re: Generating nanotubes psf file Axel Kohlmeyer (Mon Apr 05 2010 - 09:52:55 CDT)
- [Help] cross-sections Jervis Chu (Sat Apr 03 2010 - 23:18:54 CDT)
- RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5) J. Rui Rodrigues (Thu Apr 01 2010 - 11:51:06 CDT)
- Extract specific frames from trajectory Cathal Leahy (Thu Apr 01 2010 - 10:40:19 CDT)
- Creating length dependent coloured bonds in VMD Willie Maddox (Tue Mar 30 2010 - 14:17:33 CDT)
- Creating bonds using VMD Mihir Tungare (Mon Mar 29 2010 - 16:34:21 CDT)
- (no subject) Irene Newhouse (Mon Mar 29 2010 - 15:12:41 CDT)
- can't find file sarah k (Mon Mar 29 2010 - 02:46:20 CDT)
- VMD 1.8.7 hangs on launch Leif Halvorsen (Fri Mar 26 2010 - 14:37:03 CDT)
- problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory Knut Jrgen Bjuland (Thu Mar 25 2010 - 04:26:35 CDT)
- Re: problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory Axel Kohlmeyer (Thu Mar 25 2010 - 06:01:48 CDT)
- visualizing trr file gurvisha sandhu (Thu Mar 25 2010 - 03:27:23 CDT)
- Visualisation of VTF trajectories using VMD under Windows ? Marek Maly (Wed Mar 24 2010 - 05:31:36 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Olaf Lenz (Wed Mar 24 2010 - 10:19:33 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? John Stone (Wed Mar 24 2010 - 11:01:16 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Ajasja Ljubetič (Wed Mar 24 2010 - 11:29:10 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Marek Maly (Wed Mar 24 2010 - 17:24:56 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? Olaf Lenz (Wed Mar 24 2010 - 10:19:33 CDT)
- solventplugin-Watermodels Salvador H-V (Tue Mar 23 2010 - 13:08:13 CDT)
- Wrapping membrane to center of PBC-Box Bjoern Olausson (Tue Mar 23 2010 - 12:06:31 CDT)
- implicit solvent politr_at_huji.ac.il (Tue Mar 23 2010 - 09:16:29 CDT)
- Fwd: [ACS award information, March 30 deadline] John Stone (Mon Mar 22 2010 - 12:23:45 CDT)
- writepdb using selection form different molecules Bernardo Sosa Padilla Araujo (Fri Mar 19 2010 - 23:29:56 CDT)
- Running IMD interactivelly under the shell Nuno Sousa Cerqueira (Thu Mar 18 2010 - 14:18:22 CDT)
- why electrostatic interaction energy increases with the increase of cutoff using namdenergy Lan Hua (Wed Mar 17 2010 - 21:18:55 CDT)
- Selecting AMBER ions Cl- and Na+ using VMD DimitryASuplatov (Wed Mar 17 2010 - 06:42:41 CDT)
- Installing VMD Salvador H-V (Tue Mar 16 2010 - 12:26:08 CDT)
- (no subject) Roshan Tasgaonkar (Mon Mar 15 2010 - 18:07:34 CDT)
- why huge positive vdw energy from namdenergy plugin Lan Hua (Mon Mar 15 2010 - 18:02:56 CDT)
- Re: Loading Gaussian Log File into Paratool Kovcs, Sndor dm (Mon Mar 15 2010 - 16:54:39 CDT)
- Aligning Desmond Trajectories again Irene Newhouse (Mon Mar 15 2010 - 15:05:46 CDT)
- CGenFF atom types Ziemys, Arturas (Sun Mar 14 2010 - 19:44:53 CDT)
- IMD with Phantom Omni Mark Cunningham (Sun Mar 14 2010 - 14:45:21 CDT)
- running ILS under Windows 7 Irene Newhouse (Sat Mar 13 2010 - 22:32:15 CST)
- Loading Gaussian Log File into Paratool Will Bricker (Sat Mar 13 2010 - 16:19:08 CST)
- Topotools1.0 muniyamuthu.raviprasad_at_ndsu.edu (Sat Mar 13 2010 - 13:04:38 CST)
- Problems with VMD installation Fedora 12 64bits Edith Euan (Sat Mar 13 2010 - 00:57:39 CST)
- Patch for Three or More monomers muniyamuthu.raviprasad_at_ndsu.edu (Fri Mar 12 2010 - 10:41:03 CST)
- CUDA out of memory Ajasja Ljubetič (Fri Mar 12 2010 - 08:22:40 CST)
- Re: WIN64 build Ajasja Ljubetič (Fri Mar 12 2010 - 07:46:55 CST)
- Re: properly applying patches to create DPPC JC Gumbart (Thu Mar 11 2010 - 17:48:11 CST)
- (no subject) Roshan Tasgaonkar (Wed Mar 10 2010 - 22:55:31 CST)
- properly applying patches to create DPPC Ronald Salesky (Wed Mar 10 2010 - 18:33:59 CST)
- Problems with "animate next" inside for-loops nicholas lee (Wed Mar 10 2010 - 16:41:45 CST)
- Charmm parameters for Polybutylene terephthalate (PBT) muniyamuthu.raviprasad_at_ndsu.edu (Wed Mar 10 2010 - 13:20:38 CST)
- Isosurface wraps in PME Electrostatics calc'n Irene Newhouse (Tue Mar 09 2010 - 14:06:02 CST)
- MergeStructs Plugin in text mode Alexandre Suman de Araujo (Tue Mar 09 2010 - 12:24:46 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Tue Mar 09 2010 - 13:24:49 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Wed Mar 10 2010 - 06:03:01 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Wed Mar 10 2010 - 07:57:38 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Thu Mar 11 2010 - 12:04:44 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Fri Mar 12 2010 - 09:11:24 CST)
- Re: MergeStructs Plugin in text mode Robert Brunner (Fri Mar 12 2010 - 11:51:54 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Fri Mar 12 2010 - 13:40:03 CST)
- Re: MergeStructs Plugin in text mode Alexandre Suman de Araujo (Wed Mar 10 2010 - 06:03:01 CST)
- Re: MergeStructs Plugin in text mode Axel Kohlmeyer (Tue Mar 09 2010 - 13:24:49 CST)
- keyboard-mouse-controlled view for VMDMovie plugin Tibbitt, Jeffrey A. (Tue Mar 09 2010 - 10:27:36 CST)
- Viewing changing beta along a trajectory Thomas Steinbrecher (Tue Mar 09 2010 - 10:26:16 CST)
- Error vmd and Nvidia Graphik Card Christian Wohlschlager (Tue Mar 09 2010 - 10:19:47 CST)
- analyzing gromacs trajectory (.trr) with VMD politr_at_huji.ac.il (Tue Mar 09 2010 - 03:48:24 CST)
- Mean atom position Katherine Parra (Mon Mar 08 2010 - 13:04:47 CST)
- (no subject) Roshan Tasgaonkar (Mon Mar 08 2010 - 12:21:08 CST)
- Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 08:59:14 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 09:25:27 CST)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 10:04:00 CST)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 10:05:36 CST)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 13:47:43 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 14:32:10 CST)
- Re: Add a surface to a pdb file Taufik Al-Sarraj (Wed May 05 2010 - 18:53:30 CDT)
- Re: Add a surface to a pdb file Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
- Re: Add a surface to a pdb file John Stone (Mon Mar 08 2010 - 09:25:27 CST)
- script for area per lipid Demet Akten (Mon Mar 08 2010 - 06:39:16 CST)
- trajectory_path.tcl queries Francesco Pietra (Sun Mar 07 2010 - 02:55:03 CST)
- Question Regarding User-Defined Trajectories Wallace Dumars (Fri Mar 05 2010 - 15:53:01 CST)
- MDFF plug-in A D (Fri Mar 05 2010 - 15:09:06 CST)
- STRIDE error: too many atoms in res Nadine Utz (Fri Mar 05 2010 - 10:29:34 CST)
- VMD-Cones and Povray rendering Olaf Lenz (Fri Mar 05 2010 - 02:31:11 CST)
- pbc in water count Agarwal, Silvi (Thu Mar 04 2010 - 12:07:37 CST)
- CUDA issues Filippo Federici (Thu Mar 04 2010 - 01:18:14 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 08:11:53 CST)
- Re: CUDA issues Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 10:32:06 CST)
- Re: CUDA issues Filippo Federici Canova (Thu Mar 04 2010 - 11:54:09 CST)
- Re: CUDA issues Axel Kohlmeyer (Thu Mar 04 2010 - 13:16:58 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 13:54:49 CST)
- Re: CUDA issues Filippo Federici (Fri Mar 05 2010 - 01:38:40 CST)
- Re: CUDA issues John Stone (Mon Mar 08 2010 - 11:19:00 CST)
- Re: CUDA issues Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
- Re: CUDA issues John Stone (Thu Mar 04 2010 - 08:11:53 CST)
- Finding residues with some distance Neeraj Jagdish Agrawal (Wed Mar 03 2010 - 17:38:33 CST)
- intersurf plugin missing in VMD 1.8.7 ? Bennion, Brian (Wed Mar 03 2010 - 11:11:49 CST)
- Binary VMD buid for Linux, text mode only Benjamin Bouvier (Wed Mar 03 2010 - 09:26:20 CST)
- display of the atom number beyond 100000 in pdb file YangMingjun (Tue Mar 02 2010 - 20:36:25 CST)
- 3D Connexion - Space Navigator (OSX drivers) Tibbitt, Jeffrey A. (Tue Mar 02 2010 - 20:24:34 CST)
- wrapping dimer units in a Desmond traj Irene Newhouse (Tue Mar 02 2010 - 13:51:25 CST)
- Running Python within VMD radak004_at_umn.edu (Tue Mar 02 2010 - 13:07:51 CST)
- psfgen for protein-RNA complex YangMingjun (Tue Mar 02 2010 - 10:50:13 CST)
- measure command problem Bernardo Sosa Padilla Araujo (Mon Mar 01 2010 - 21:44:09 CST)
- Generating a PSF for a Non-protien Aziz, John (Mon Mar 01 2010 - 08:27:10 CST)
- Problem with New cartoon representation Carla Jamous (Mon Mar 01 2010 - 02:37:33 CST)
- Hbonds calc with residue not in CHARMm Irene Newhouse (Fri Feb 26 2010 - 14:40:28 CST)
- Rotating user-defined graphics? Reid Van Lehn (Fri Feb 26 2010 - 12:24:43 CST)
- Can anyone help me get the coordinate of the cylinders in the cartoon representation? Chen, Bo (NIH/NIDDK) [F] (Fri Feb 26 2010 - 11:11:42 CST)
- slower trajectory loading when CUDA support is enabled Michel Espinoza-Fonseca (Thu Feb 25 2010 - 14:35:18 CST)
- VMD Asfa Ali (Thu Feb 25 2010 - 13:18:21 CST)
- about command measure dipole matziast_at_med.uth.gr (Wed Feb 24 2010 - 12:37:49 CST)
- Bigdcd and Namdenergy batch problem Andrea Carotti (Wed Feb 24 2010 - 10:21:34 CST)
- Regarding coordinates transformation aneesh cna (Wed Feb 24 2010 - 01:04:27 CST)
- a problem in visualizing dump files with vmd Robabeh Moosavi (Tue Feb 23 2010 - 05:43:46 CST)
- VMD water protein anlysis snoze pa (Mon Feb 22 2010 - 15:39:54 CST)
- Probe orientations in ILS Irene Newhouse (Mon Feb 22 2010 - 13:19:56 CST)
- Mutator plugin console q (Mon Feb 22 2010 - 07:04:50 CST)
- gradient background not rendered BIN ZHANG (Fri Feb 19 2010 - 16:50:59 CST)
- Numeric Library of Python for VMD 1.8.7 Yue Yang (Wed Feb 17 2010 - 22:22:27 CST)
- producing high quality video on Mac Dan Lussier (Wed Feb 17 2010 - 17:51:03 CST)
- 2 questions about "measure sasa" Edward Lyman (Wed Feb 17 2010 - 14:40:53 CST)
- creating a povray file gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 10:44:02 CST)
- problem of installing vmd 1.8.7 on Mac osx 10.4.11 Jane Bailey (Wed Feb 17 2010 - 09:35:53 CST)
- Porcupine update Carsten Olbrich (Wed Feb 17 2010 - 03:03:27 CST)
- How to make Porcupine plots in VMD Surendra Kumar Jain (Tue Feb 16 2010 - 13:28:07 CST)
- VMD and Amber coordinates rebeca (Tue Feb 16 2010 - 12:31:52 CST)
- get view direction Jacob Kirkensgaard (Tue Feb 16 2010 - 03:58:24 CST)
- PSF Generation BIPLAB NANDI (Mon Feb 15 2010 - 23:10:53 CST)
- Can't find C-PDB bond parameters Francesco Pietra (Mon Feb 15 2010 - 03:46:29 CST)
- running namd2 on Mac PPC cluster Robert Wohlhueter (Sun Feb 14 2010 - 13:13:16 CST)
- CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES Francesco Pietra (Sun Feb 14 2010 - 10:26:01 CST)
- top_all22_prot.inp & par_all22_prot.inp geetha9999_at_aol.com (Sun Feb 14 2010 - 09:49:24 CST)
- Retrieving an atom and its coordinates Marc Charendoff (Sat Feb 13 2010 - 16:19:50 CST)
- Mirror reflection Rachel Ruskin (Sat Feb 13 2010 - 01:24:58 CST)
- psfgen generates 0 atom .psf file Ronald Salesky (Fri Feb 12 2010 - 19:41:10 CST)
- X_ChangeProperty error Bennion, Brian (Fri Feb 12 2010 - 14:50:27 CST)
- xyz file and VASP CHGCAR file do not overlap Decai Yu (Fri Feb 12 2010 - 13:29:44 CST)
- RMSD trajectory tools Asfa Ali (Fri Feb 12 2010 - 06:16:22 CST)
- amino acid mutation plugin geetha9999_at_aol.com (Thu Feb 11 2010 - 13:37:08 CST)
- how to set PBC for ILS Irene Newhouse (Wed Feb 10 2010 - 16:35:17 CST)
- Boolean operators and the new atomsel type Daniel Terry (Wed Feb 10 2010 - 12:30:21 CST)
- convert unformatted delphi phi to formatted Jun Cheng (Wed Feb 10 2010 - 10:09:55 CST)
- psf file generation.? zubin mehta (Wed Feb 10 2010 - 05:58:45 CST)
- invalid command name 'vmdcon' zubin mehta (Wed Feb 10 2010 - 04:41:01 CST)
- What occupancy at the Hbond plugin mean? Itamar Kass (Tue Feb 09 2010 - 05:15:27 CST)
- how long do ILS runs take? Irene Newhouse (Mon Feb 08 2010 - 14:05:30 CST)
- Converting tracker coordinates to molecule coordinate for selection Dipesh Bhattarai (Mon Feb 08 2010 - 10:57:03 CST)
- Blank thumbnails and non-working snapshots Christopher McLean (Mon Feb 08 2010 - 09:55:13 CST)
- Re: Blank thumbnails and non-working snapshots Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 08:12:37 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Tue Feb 09 2010 - 09:04:06 CST)
- RE: Blank thumbnails and non-working snapshots Axel Kohlmeyer (Tue Feb 09 2010 - 08:24:14 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 09:29:32 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 09:44:00 CST)
- Re: Blank thumbnails and non-working snapshots John Stone (Tue Feb 09 2010 - 10:07:31 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Thu Feb 11 2010 - 03:18:29 CST)
- RE: Blank thumbnails and non-working snapshots Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
- Re: Blank thumbnails and non-working snapshots Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
- problem with generating PSF file for guanine based molecule Parisa Akhski (Sun Feb 07 2010 - 11:51:03 CST)
- VMD, Tachyon and depth of field Marc Baaden (Sat Feb 06 2010 - 10:07:07 CST)
- how to do acetylated lysine in VMD Vo Cam Quy (Fri Feb 05 2010 - 14:27:46 CST)
- Changing decimal places in a label? Dr. Seth Olsen (Wed Feb 03 2010 - 23:21:12 CST)
- Trouble building VMD 1.8.7 on Mac OS X Joshua Anderson (Wed Feb 03 2010 - 15:39:52 CST)
- molecular dipole moment Jelle van Sijl (Wed Feb 03 2010 - 11:21:33 CST)
- VMD script: save coordinates problem martin klvana (Mon Feb 01 2010 - 20:25:49 CST)
- running LAMMPS output via VMD Krigel, Igal (Mon Feb 01 2010 - 06:10:56 CST)
- Number of H bond formation in VMD snoze pa (Thu Jan 28 2010 - 17:32:10 CST)
- vmd hbond Calculation snoze pa (Thu Jan 28 2010 - 11:54:45 CST)
- import xyz file Naiyin Yu (Tue Jan 26 2010 - 16:51:04 CST)
- About Paratool Caio Veloso (Tue Jan 26 2010 - 11:21:13 CST)
- VMD version 1.8.7 (LINUX OpenGL, CUDA) on UBUNTU 9.10 A D (Mon Jan 25 2010 - 13:50:06 CST)
- SASA and SESA Khaled Barakat (Sun Jan 24 2010 - 14:44:45 CST)
- Re: VMD installation: Windows OpenGL John Stone (Sun Jan 24 2010 - 13:33:16 CST)
- Number of Hydrogen Bonds among Water an Protein Mert Gr (Sun Jan 24 2010 - 13:17:09 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Leonardo Trabuco (Sun Jan 24 2010 - 13:22:31 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert Gr (Sun Jan 24 2010 - 14:00:32 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert Gr (Sun Jan 24 2010 - 14:25:52 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Leonardo Trabuco (Sun Jan 24 2010 - 16:42:01 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert Gr (Mon Jan 25 2010 - 07:50:25 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Axel Kohlmeyer (Mon Jan 25 2010 - 08:55:05 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert Gr (Tue Jan 26 2010 - 15:31:45 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Axel Kohlmeyer (Tue Jan 26 2010 - 15:39:18 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Mert Gr (Sun Jan 24 2010 - 14:00:32 CST)
- Re: Number of Hydrogen Bonds among Water an Protein Leonardo Trabuco (Sun Jan 24 2010 - 13:22:31 CST)
- autopsf needs at least one atom error Ronald Salesky (Sun Jan 24 2010 - 12:43:51 CST)
- autopsf generator need at least one atom error Ronald Salesky (Sun Jan 24 2010 - 12:29:12 CST)
- Graphics card for molecular graphics Edelmiro Moman (Sun Jan 24 2010 - 10:57:42 CST)
- SASA and SESA Khaled Barakat (Fri Jan 22 2010 - 20:22:25 CST)
- Syntax and capabilities of writetrr Marc Baaden (Fri Jan 22 2010 - 02:43:27 CST)
- water in a certein box Naiyin Yu (Thu Jan 21 2010 - 17:09:10 CST)
- sasa function Bernhard Knapp (Thu Jan 21 2010 - 02:32:31 CST)
- 3D glasses with LCD Nicolas Floquet (Wed Jan 20 2010 - 06:52:16 CST)
- Re: namd-l: NAMD ibverbs not working on new cluster Carsten Olbrich (Wed Jan 20 2010 - 06:49:43 CST)
- 3D Glasses with LCD for VMD Nicolas Floquet (Wed Jan 20 2010 - 06:46:11 CST)
- How to display real time when reading trr file? Cun Zhang (Wed Jan 20 2010 - 01:59:20 CST)
- How to display real time when reading trr file? Cun Zhang (Wed Jan 20 2010 - 01:59:16 CST)
- 3D Stereo : Windows 7, nVIDIA GEFORCE Deepangi Pandit (Tue Jan 19 2010 - 17:32:04 CST)
- visualizing APBS output Irene Newhouse (Tue Jan 19 2010 - 13:31:08 CST)
- Selection tool Narasimhan LOGANATHAN (Tue Jan 19 2010 - 03:06:21 CST)
- masure distance trajectory - delete variable Balazs Jojart (Sun Jan 17 2010 - 05:11:07 CST)
- bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Fri Jan 15 2010 - 11:30:48 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Fri Jan 15 2010 - 12:01:17 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 10:24:45 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 11:12:11 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Axel Kohlmeyer (Wed Jan 20 2010 - 11:42:57 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 12:24:16 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 12:37:38 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 13:48:09 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 14:01:45 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Wed Jan 20 2010 - 14:12:07 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) Axel Kohlmeyer (Fri Jan 15 2010 - 12:11:21 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) John Stone (Fri Jan 15 2010 - 12:01:17 CST)
- APBS tutorial link broken Irene Newhouse (Thu Jan 14 2010 - 17:01:14 CST)
- labeling bonds between two atoms gurunath katagi (Thu Jan 14 2010 - 12:12:36 CST)
- harmonic constraint when equilibrate the system Naiyin Yu (Wed Jan 13 2010 - 21:44:03 CST)
- Topotools plugin: guessimpropers? MyLinkka (Wed Jan 13 2010 - 08:28:28 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Wed Jan 13 2010 - 09:19:16 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Wed Jan 13 2010 - 10:41:18 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Wed Jan 13 2010 - 11:08:36 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 06:05:53 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Fri Jan 15 2010 - 09:10:27 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 17:53:39 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Fri Jan 15 2010 - 18:12:12 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 21:54:19 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Fri Jan 15 2010 - 22:36:14 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Fri Jan 15 2010 - 23:25:21 CST)
- Re: Topotools plugin: guessimpropers? MyLinkka (Wed Jan 13 2010 - 10:41:18 CST)
- Re: Topotools plugin: guessimpropers? Axel Kohlmeyer (Wed Jan 13 2010 - 09:19:16 CST)
- HOOMD plugin Benjamin Bouvier (Tue Jan 12 2010 - 11:04:08 CST)
- PME isosurface not superimposed on protein Irene Newhouse (Mon Jan 11 2010 - 16:20:50 CST)
- vmdcollab in VMD xaneorat_at_mail.uni-paderborn.de (Mon Jan 11 2010 - 05:19:33 CST)
- Maestro file export Jacob Poehlsgaard (Mon Jan 11 2010 - 03:21:22 CST)
- display surface amino acid beads Christine Horejs (Sat Jan 09 2010 - 04:22:34 CST)
- obscurity in sbcg tutorial description Francesco Pietra (Sat Jan 09 2010 - 03:37:49 CST)
- Compiling VMD plugins on Windows? Olaf Lenz (Fri Jan 08 2010 - 09:20:47 CST)
- Fwd: Re: allowing negative 'resid' numbers in selection strings Vlad Cojocaru (Fri Jan 08 2010 - 09:10:02 CST)
- allowing negative 'resid' numbers in selection strings Vlad Cojocaru (Fri Jan 08 2010 - 07:56:16 CST)
- vmd 1.8.7 getting the terminal free maria goranovic (Fri Jan 08 2010 - 05:20:46 CST)
- VMD lammps plugin: a possible bug MyLinkka (Thu Jan 07 2010 - 10:35:57 CST)
- VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 04:32:30 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Olaf Lenz (Wed Jan 06 2010 - 05:57:47 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Wed Jan 06 2010 - 07:41:05 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 08:26:00 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 08:58:50 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? John Stone (Wed Jan 06 2010 - 10:10:51 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Wed Jan 06 2010 - 10:48:28 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Wayne Dawson (Wed Jan 06 2010 - 20:48:34 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Wed Jan 06 2010 - 22:22:56 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Wayne Dawson (Thu Jan 07 2010 - 01:58:26 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Thu Jan 07 2010 - 04:36:42 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Thu Jan 07 2010 - 06:04:14 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? Axel Kohlmeyer (Thu Jan 07 2010 - 05:55:29 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? maria goranovic (Wed Jan 06 2010 - 08:26:00 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? John Stone (Wed Jan 06 2010 - 10:06:34 CST)
- CUDA-NAMD hangs -- check the Northbridge temp! Biff Forbush (Tue Jan 05 2010 - 21:51:51 CST)
- conflict between VMD and Netbeans IDE on MacOSX Wayne Dawson (Tue Jan 05 2010 - 21:16:58 CST)
- New Cartoon representation problem Kassem Ghaddar (Tue Jan 05 2010 - 04:09:16 CST)
- slow visualization using molecular representations with VMD 1.8.7 on mac Matthieu Chavent (Tue Jan 05 2010 - 03:47:17 CST)
- VMD-Xplor interface problem Vitaly Vostrikov (Sun Jan 03 2010 - 20:18:01 CST)
- Failure of AutoSCFBuilder to recognize all monomers Francesco Pietra (Sun Jan 03 2010 - 04:54:24 CST)
- vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sat Jan 02 2010 - 18:16:54 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Sun Jan 03 2010 - 01:56:14 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sun Jan 03 2010 - 11:41:03 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Sun Jan 03 2010 - 17:46:21 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sun Jan 03 2010 - 22:19:29 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Wed Jan 06 2010 - 12:56:47 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Wed Jan 06 2010 - 21:48:14 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Tue Jan 12 2010 - 00:02:08 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Tue Jan 12 2010 - 10:27:04 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start Guo Zhi (Sun Jan 03 2010 - 11:41:03 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start John Stone (Sun Jan 03 2010 - 01:56:14 CST)
- reply Prathit Chatterjee (Sat Jan 02 2010 - 05:33:04 CST)
- About the criterion of H bond yongle (Sat Jan 02 2010 - 02:23:18 CST)
- vmd installation in linux Prathit Chatterjee (Fri Jan 01 2010 - 22:08:09 CST)
- Re: vmd installation in linux John Stone (Sat Jan 02 2010 - 01:08:58 CST)
- Re: vmd installation in linux Ocar Campos (Sat Jan 02 2010 - 06:20:15 CST)
- Re: vmd installation in linux Prathit Chatterjee (Sun Jan 03 2010 - 04:09:13 CST)
- Re: vmd installation in linux jani sahil (Sun Jan 03 2010 - 05:15:26 CST)
- Re: vmd installation in linux Axel Kohlmeyer (Sun Jan 03 2010 - 05:23:58 CST)
- Re: vmd installation in linux Ocar Campos (Fri Jan 08 2010 - 06:48:56 CST)
- Re: vmd installation in linux Axel Kohlmeyer (Fri Jan 08 2010 - 08:27:06 CST)
- Re: vmd installation in linux Ocar Campos (Fri Jan 08 2010 - 10:14:50 CST)
- Re: vmd installation in linux Axel Kohlmeyer (Fri Jan 08 2010 - 10:35:48 CST)
- Re: vmd installation in linux Ocar Campos (Fri Jan 08 2010 - 10:37:12 CST)
- Re: vmd installation in linux John Stone (Sat Jan 02 2010 - 01:08:58 CST)
- Superposition of Multiple Trajectory Timesteps IJ (Thu Dec 31 2009 - 05:47:20 CST)
- Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 08:08:03 CST)
- Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 10:57:08 CST)
- Re:Re: Re: Superposition of Multiple Trajectory Timesteps wenchangyu2006_at_gmail.com (Fri Jan 01 2010 - 06:28:22 CST)
- Re: Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Fri Jan 01 2010 - 10:16:38 CST)
- Re: Re: Re: Superposition of Multiple Trajectory Timesteps John Stone (Fri Jan 01 2010 - 17:43:58 CST)
- Re:Re: Re: Re: Superposition of Multiple Trajectory Timesteps wenchangyu2006_at_gmail.com (Sat Jan 02 2010 - 16:00:44 CST)
- Re: Re: Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Sat Jan 02 2010 - 16:24:07 CST)
- Re:Re: Re: Re: Re: Superposition of Multiple Trajectory Timesteps wenchangyu2006_at_gmail.com (Sun Jan 03 2010 - 02:48:55 CST)
- Re: Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 10:57:08 CST)
- Re: Superposition of Multiple Trajectory Timesteps Axel Kohlmeyer (Thu Dec 31 2009 - 08:08:03 CST)
- sbcg with multimers Francesco Pietra (Wed Dec 30 2009 - 15:22:43 CST)
- IMD in VMD Lixia Jin Day (Tue Dec 29 2009 - 17:42:57 CST)
- UNIT CELL Narasimhan LOGANATHAN (Tue Dec 29 2009 - 09:49:29 CST)
- Re: UNIT CELL Axel Kohlmeyer (Tue Dec 29 2009 - 10:37:59 CST)
- Re: UNIT CELL Olaf Lenz (Wed Dec 30 2009 - 04:13:59 CST)
- Re: UNIT CELL Narasimhan LOGANATHAN (Wed Jan 06 2010 - 02:37:11 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 04:58:21 CST)
- Re: UNIT CELL Narasimhan LOGANATHAN (Wed Jan 06 2010 - 05:21:19 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Jan 06 2010 - 05:36:13 CST)
- Re: UNIT CELL Olaf Lenz (Wed Dec 30 2009 - 04:13:59 CST)
- Re: UNIT CELL Axel Kohlmeyer (Tue Dec 29 2009 - 10:37:59 CST)
- PDB file Burak Cankurtaran (Tue Dec 29 2009 - 05:41:23 CST)
- Re: Problem when using VMD Python Library Cun Zhang (Sun Dec 27 2009 - 08:31:04 CST)
- Problem when using VMD Python Library Cun Zhang (Fri Dec 25 2009 - 06:03:46 CST)
- remove water snoze pa (Wed Dec 23 2009 - 14:44:45 CST)
- installation problem Jin Wen (Tue Dec 22 2009 - 17:46:43 CST)
- rdf curve gurunath katagi (Tue Dec 22 2009 - 08:17:57 CST)
- superimposed structure leila karami (Sun Dec 20 2009 - 08:46:03 CST)
- superimposed structure leila karami (Sun Dec 20 2009 - 08:07:16 CST)
- vmd won't display in lines Gard Nelson (Fri Dec 18 2009 - 16:17:45 CST)
- Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 16:45:07 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 17:03:07 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 18:05:34 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 19:05:29 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 19:17:47 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 19:20:35 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 19:35:12 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 19:52:56 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 20:08:08 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Wed Dec 30 2009 - 13:03:05 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Mon Jan 11 2010 - 19:24:16 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Jan 14 2010 - 15:02:33 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Jan 14 2010 - 16:44:32 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Jan 14 2010 - 19:03:21 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Jan 14 2010 - 23:27:51 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Wed Jan 20 2010 - 17:38:13 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Fri Jan 22 2010 - 18:15:43 CST)
- Re: Re: VMD CVS Request for Richard Cook Rich Cook (Thu Dec 17 2009 - 18:05:34 CST)
- Re: Re: VMD CVS Request for Richard Cook John Stone (Thu Dec 17 2009 - 17:03:07 CST)
- Re: Request for information John Stone (Thu Dec 17 2009 - 13:29:52 CST)
- Fwd: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation Francesco Pietra (Thu Dec 17 2009 - 02:34:23 CST)
- Problem generating psf file in psfgen Ranyere Deyler (Wed Dec 16 2009 - 23:24:58 CST)
- Re: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation Peter Freddolino (Wed Dec 16 2009 - 18:49:13 CST)
- Graphical Representations doesn't recognize chain ID z Samuel Coulbourn Flores (Wed Dec 16 2009 - 09:59:47 CST)
- VMD plugin: filenames supposed to have dot in it?!?! Rob (Wed Dec 16 2009 - 01:07:20 CST)
- VMD plugin for abinit Rob (Tue Dec 15 2009 - 21:47:08 CST)
- how to label the distances using tk console mode YangMingjun (Tue Dec 15 2009 - 19:24:00 CST)
- VMD on AIX --- successful build, failed execution Rich Cook (Tue Dec 15 2009 - 16:26:00 CST)
- Issues with flickering display using VMD 1.8.7 displaying over X11 to remote Mac Rich Cook (Tue Dec 15 2009 - 15:03:07 CST)
- Graphics card for VMD Berit Hinnemann (Tue Dec 15 2009 - 11:25:25 CST)
- hbonds.tcl selection problem in command-line Nicola Giacche' (Tue Dec 15 2009 - 05:25:01 CST)
- IDs of representations Carsten Olbrich (Tue Dec 15 2009 - 03:30:54 CST)
- Re: namd-l: Fwd: conf file for coarse grained simulation Francesco Pietra (Tue Dec 15 2009 - 02:40:55 CST)
- superimposed structure leila karami (Tue Dec 15 2009 - 00:21:04 CST)
- File owner/group settings after installing precompiled VMD. Rob (Mon Dec 14 2009 - 21:13:23 CST)
- solvating diferent regions in VMD Ranyere Deyler (Mon Dec 14 2009 - 17:07:38 CST)
- PBC + DCD wrap/unwrap Goutham (Mon Dec 14 2009 - 13:37:36 CST)
- Re: namd CG minimization error: unable to find angle parameters for nxg nxx nxg Francesco Pietra (Fri Dec 11 2009 - 09:52:43 CST)
- namd CG minimization error: unable to find angle parameters for nxg nxx nxg Francesco Pietra (Thu Dec 10 2009 - 10:27:13 CST)
- Fwd: Calculation the Surface Area/Volume of a Protein Cavity Nuno Sousa Cerqueira (Thu Dec 10 2009 - 07:13:07 CST)
- About "Visualization and Analysis of CPMD data with VMD" tutorial Aurum Bai (Thu Dec 10 2009 - 02:29:22 CST)
- Fwd: paratool - parameter generation from gaussian log files Nuno Sousa Cerqueira (Thu Dec 10 2009 - 01:05:51 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault" Rob (Wed Dec 09 2009 - 22:24:16 CST)
- paratool - parameter generation from gaussian log files Yu Fang (Wed Dec 09 2009 - 22:17:57 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Thu Dec 10 2009 - 00:07:06 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Thu Dec 10 2009 - 05:08:03 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Fri Dec 11 2009 - 01:32:10 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Mon Dec 14 2009 - 05:40:47 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Mon Dec 14 2009 - 23:37:02 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Mon Dec 14 2009 - 17:41:06 CST)
- Re: paratool - parameter generation from gaussian log files Yu Fang (Thu Dec 10 2009 - 05:08:03 CST)
- Re: paratool - parameter generation from gaussian log files sarah k (Thu Dec 10 2009 - 00:07:06 CST)
- error in rmsd.tcl for tutorial TAE BUM LEE (Wed Dec 09 2009 - 16:37:42 CST)
- Counting number of water molecules Bernardo Sosa Padilla Araujo (Wed Dec 09 2009 - 16:30:13 CST)
- Re: A VMD script to emulate the Matlab "jet" colorscale John Stone (Wed Dec 09 2009 - 11:48:11 CST)
- A VMD script to emulate the Matlab "jet" colorscale John Stone (Tue Dec 08 2009 - 16:49:40 CST)
- Restraints on coarse grained model Francesco Pietra (Tue Dec 08 2009 - 13:23:59 CST)
- Broken bonds in trajectory due to pbc Jennifer Williams (Tue Dec 08 2009 - 05:41:07 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
- Re: Broken bonds in trajectory due to pbc Axel Kohlmeyer (Tue Dec 08 2009 - 16:32:01 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Wed Dec 09 2009 - 04:04:29 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Wed Dec 09 2009 - 04:14:34 CST)
- Re: Broken bonds in trajectory due to pbc Jennifer Williams (Wed Dec 09 2009 - 06:39:48 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
- Re: Broken bonds in trajectory due to pbc Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (however: 1.8.6 works!) Rob (Tue Dec 08 2009 - 01:03:29 CST)
- vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Mon Dec 07 2009 - 21:25:11 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault John Stone (Mon Dec 07 2009 - 21:45:44 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Tue Dec 08 2009 - 08:05:26 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Fri Dec 11 2009 - 08:53:35 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault Rob (Sun Dec 13 2009 - 18:33:35 CST)
- FW: VMD 1.8.7 build with VRPN 7.23 Mark Cunningham (Mon Dec 07 2009 - 14:09:59 CST)
- vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Mon Dec 07 2009 - 09:40:30 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Mon Dec 07 2009 - 14:43:51 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Tue Dec 08 2009 - 14:22:23 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Tue Dec 08 2009 - 14:44:06 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Wed Dec 09 2009 - 13:37:45 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Wed Dec 09 2009 - 13:53:18 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Wed Dec 09 2009 - 13:57:18 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" Tru Huynh (Tue Dec 08 2009 - 14:22:23 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" John Stone (Mon Dec 07 2009 - 14:43:51 CST)
- cluster of particles Salvador H-V (Sun Dec 06 2009 - 20:00:39 CST)
- porcupine plots for PC1 Dawn (Sun Dec 06 2009 - 13:29:19 CST)
- Fwd: Failure with AutoPSF (PDB has x, y, z zero) Francesco Pietra (Sat Dec 05 2009 - 12:51:22 CST)
- Failure with AutoPSF (PDB has x, y, z zero) Francesco Pietra (Fri Dec 04 2009 - 12:35:12 CST)
- regarding generating movie jani sahil (Fri Dec 04 2009 - 02:49:19 CST)
- RMSD for individual residue for a tetarmer gurunath katagi (Fri Dec 04 2009 - 00:20:03 CST)
- Nucleic acid topology file for PSF generation Jim Parker (Thu Dec 03 2009 - 21:56:00 CST)
- desmond plugin Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:43:02 CST)
- desmond plugin Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:37:51 CST)
- in search of lipid files Francesco Pietra (Thu Dec 03 2009 - 16:11:43 CST)
- ccp4 in vmd pebblepeddle_at_gmail.com (Wed Dec 02 2009 - 21:55:58 CST)
- Drawing cylinder in VMD rainy908_at_yahoo.com (Wed Dec 02 2009 - 17:29:24 CST)
- CG lipid bilayer vmd 1.8.7 Francesco Pietra (Wed Dec 02 2009 - 12:13:53 CST)
- coloring by difference in beta factors cubellis_at_unina.it (Tue Dec 01 2009 - 06:25:28 CST)
- Cant start IED Thomas Steinbrecher (Tue Dec 01 2009 - 05:00:15 CST)
- building VMD is tricky -please help Rich Cook (Mon Nov 30 2009 - 17:49:23 CST)
- Re: building VMD is tricky -please help Dipesh Bhattarai (Mon Nov 30 2009 - 19:32:09 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 10:05:01 CST)
- Re: building VMD is tricky -please help Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 14:03:53 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 15:27:37 CST)
- Re: building VMD is tricky -please help Rich Cook (Tue Dec 01 2009 - 17:50:48 CST)
- Re: building VMD is tricky -please help Axel Kohlmeyer (Tue Dec 01 2009 - 18:31:54 CST)
- Re: building VMD is tricky -please help John Stone (Tue Dec 01 2009 - 19:51:37 CST)
- Re: building VMD is tricky -please help Rich Cook (Wed Dec 02 2009 - 13:26:42 CST)
- Re: building VMD is tricky -please help John Stone (Wed Dec 02 2009 - 13:39:53 CST)
- Re: building VMD is tricky -please help Rich Cook (Wed Dec 02 2009 - 15:14:03 CST)
- Re: building VMD is tricky -please help Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
- Survey: 3 minutes of your time Pieter van 't Hof (Mon Nov 30 2009 - 07:56:47 CST)
- generating .xsc file from .dcd Neelanjana Sengupta (Mon Nov 30 2009 - 04:19:43 CST)
- Polyhedra with two selections? Georg Spiekermann (Mon Nov 30 2009 - 04:01:12 CST)
- Color by position behavior JT (Sun Nov 29 2009 - 02:59:31 CST)
- error in rbcg-2007.par file BIN ZHANG (Fri Nov 27 2009 - 13:15:01 CST)
- desmond plug-in error Nuno Sousa Cerqueira (Thu Nov 26 2009 - 11:53:58 CST)
- Secondary structure with Timeline Florentina Tofoleanu (Thu Nov 26 2009 - 06:19:15 CST)
- Hydrogen bonds with different evaluations Florentina Tofoleanu (Thu Nov 26 2009 - 05:16:34 CST)
- Move molecule to the origin of coordinate system snoze pa (Wed Nov 25 2009 - 10:49:12 CST)
- GRID maps visualization problems Sergey Samsonov (Tue Nov 24 2009 - 07:50:51 CST)
- GRID maps visualization problems Sergey Samsonov (Tue Nov 24 2009 - 07:35:51 CST)
- aligning trajectories maria goranovic (Tue Nov 24 2009 - 04:22:54 CST)
- Using class UIVR Dipesh Bhattarai (Mon Nov 23 2009 - 10:59:57 CST)
- VMD 1.8.7 amd64 python libs? Tru Huynh (Mon Nov 23 2009 - 10:30:17 CST)
- Re: namd-l: Re: problems with CG protein-lipidbilayer-water system Francesco Pietra (Sun Nov 22 2009 - 15:32:18 CST)
- problems with CG protein-lipidbilayer-water system Francesco Pietra (Sat Nov 21 2009 - 12:00:54 CST)
- destroyed molecule sarah k (Sat Nov 21 2009 - 06:57:32 CST)
- coarse-grained solvate usage Francesco Pietra (Fri Nov 20 2009 - 05:12:35 CST)
- aquire coordinates from the points of the solvent representation Nuno Sousa Cerqueira (Thu Nov 19 2009 - 13:53:40 CST)
- solvate error Rebecca Alexander (Thu Nov 19 2009 - 11:48:42 CST)
- paratool problem sarah k (Wed Nov 18 2009 - 23:43:52 CST)
- Is it the bug of VMD1.87_partool? Aurum Bai (Wed Nov 18 2009 - 06:29:56 CST)
- xzy format and ResType Christine Horejs (Tue Nov 17 2009 - 14:03:01 CST)
- Holo-Bench with VMD and Flystick2 and/or Phantom Carsten Olbrich (Tue Nov 17 2009 - 12:03:56 CST)
- polymer bead spring model file format Ding, L. (Tue Nov 17 2009 - 11:15:50 CST)
- Changing Nvidia driver Christian Wohlschlager (Tue Nov 17 2009 - 02:46:23 CST)
- VMD video-projection in 3D Nicolas Floquet (Mon Nov 16 2009 - 08:08:49 CST)
- Error: failed on end of segment with RBCG Francesco Pietra (Sun Nov 15 2009 - 03:18:57 CST)
- Multiseq question Tomek Wlodarski (Sat Nov 14 2009 - 08:02:43 CST)
- parent molecule sarah k (Fri Nov 13 2009 - 23:59:28 CST)
- (no subject) Francesco Pietra (Fri Nov 13 2009 - 03:23:21 CST)
- version 1.8.7 for amd64 and cg tools Francesco Pietra (Thu Nov 12 2009 - 23:15:31 CST)
- PBCTools-problem getting unitcell parameters A D (Thu Nov 12 2009 - 19:40:31 CST)
- problems displaying newcartoon representation Robert Meklemburg (Thu Nov 12 2009 - 11:17:19 CST)
- Stop using directory from previous session J. Rui Rodrigues (Wed Nov 11 2009 - 10:54:01 CST)
- vmd bug in ubuntu 9.10 ChoiHeeSung (Wed Nov 11 2009 - 10:53:04 CST)
- bad_alloc error Gustavo Gust (Wed Nov 11 2009 - 09:04:34 CST)
- paratool and fatal error sarah k (Tue Nov 10 2009 - 23:27:33 CST)
- Problem with exit button Nuno Sousa Cerqueira (Tue Nov 10 2009 - 04:55:24 CST)
- CG Builder Francesco Pietra (Mon Nov 09 2009 - 14:06:44 CST)
- plugin for reading (and writing) trajectories with a varying number of atoms Axel Kohlmeyer (Fri Nov 06 2009 - 14:51:02 CST)
- Question about Keyboaerd events send from other PC Christian Wohlschlager (Thu Nov 05 2009 - 02:29:36 CST)
- rmsd calculation and plot sarah k (Tue Nov 03 2009 - 23:18:29 CST)
- radius of gyration units Bernardo Sosa Padilla Araujo (Tue Nov 03 2009 - 15:08:36 CST)
- Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). Bob Johnson (Tue Nov 03 2009 - 14:49:29 CST)
- Control of aminoacid ionization in VMD Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
- VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Tue Nov 03 2009 - 04:17:59 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
- Re: VMD autopsfgen and Mg2+ sarah k (Wed Nov 04 2009 - 23:47:20 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 20:02:41 CST)
- Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Fri Nov 06 2009 - 03:58:19 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Fri Nov 06 2009 - 09:55:29 CST)
- Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Mon Nov 09 2009 - 02:46:52 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Fri Nov 06 2009 - 19:23:54 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Tue Nov 10 2009 - 23:24:02 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 09:03:44 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
- running under Shell using VMD Nuno Sousa Cerqueira (Tue Nov 03 2009 - 02:29:30 CST)
- memory issues Paymon Pirzadeh (Mon Nov 02 2009 - 12:02:14 CST)
- Using Tcl functions in a C-plugin Olaf Lenz (Mon Nov 02 2009 - 07:29:24 CST)
- movie rendering Liang, Linus H. (Mon Nov 02 2009 - 07:08:35 CST)
- dll by c++ cannot be recognized by VMD tk console ? vmd_chcwaaa (Sun Nov 01 2009 - 01:32:42 CDT)
- full version OEM soft chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 23:14:25 CDT)
- Downloadable version chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 02:51:04 CDT)
- RBCG bead diameter Christine Horejs (Wed Oct 28 2009 - 11:54:50 CDT)
- abnormal water surface after nvt and npt for POPC membrane pxq ѩ (Tue Oct 27 2009 - 19:57:58 CDT)
- Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:22:03 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:45:16 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:47:55 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:56:51 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Axel Kohlmeyer (Tue Oct 27 2009 - 13:18:17 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Roman Petrenko (Tue Oct 27 2009 - 15:13:10 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
- lammpstrj file as pdb Christine Horejs (Tue Oct 27 2009 - 11:50:06 CDT)
- Tachyon Rendering daniel aguayo (Tue Oct 27 2009 - 10:27:52 CDT)
- RBCG Model Katherine Parra (Tue Oct 27 2009 - 09:19:55 CDT)
- order parameters for long lipids Raul Araya (Tue Oct 27 2009 - 08:47:38 CDT)
- pbwithin and within differences Gustavo Gust (Tue Oct 27 2009 - 06:48:51 CDT)
- Solvate-GUI Problem: Collapses Solvent to Origin Joshua Adelman (Mon Oct 26 2009 - 20:03:37 CDT)
- using NAMD with SPC water politr_at_huji.ac.il (Mon Oct 26 2009 - 07:48:26 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:08:08 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:24:19 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:42:13 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:54:56 CDT)
- Re: using NAMD with SPC water politr_at_huji.ac.il (Tue Oct 27 2009 - 11:12:21 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Sat Oct 31 2009 - 14:23:13 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
- unparameterized residue sarah k (Sun Oct 25 2009 - 02:24:21 CDT)
- VMD and Intel X3100 GPU Mohd Farid Ismail (Sat Oct 24 2009 - 16:27:38 CDT)
- Loading trajectory into Multiseq stephane acoca (Fri Oct 23 2009 - 18:07:02 CDT)
- Selections based on "bonded to" Schmidt, Mike (Fri Oct 23 2009 - 10:56:00 CDT)
- Bugs ? Representation window does not update new material TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
- Cuda an a cluster ? Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
- Problem with vmd and ssh -X Thomas Lemmin (Thu Oct 22 2009 - 02:51:44 CDT)
- Input File Format Arian Arian (Wed Oct 21 2009 - 14:03:01 CDT)
- questions Umesh Ghoshdastider (Wed Oct 21 2009 - 11:56:24 CDT)
- bond connectivity not displayed in VMD Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
- Atom sorting according to resid andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
- Direct manipulation of the camera poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 00:21:57 CDT)
- X server is not capable of displaying double RGB images with a Z buffer Ma.Busch (Tue Oct 20 2009 - 04:09:40 CDT)
- Translating an atom along a specific direction and saving the pdb files priyodorshi satpati (Tue Oct 20 2009 - 04:08:12 CDT)
- glycerol Ayşe Özlem Aykut (Tue Oct 20 2009 - 03:13:57 CDT)
- NAMD can't malloc() error Ronald Salesky (Mon Oct 19 2009 - 12:44:55 CDT)
- Arbitrary values of isosurface aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
- paratool: unable to load optimized geometry Stanislaw Bobritsky (Mon Oct 19 2009 - 03:21:33 CDT)
- Calculate Free Volume? YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
- Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) Alberto Sergio Garay (Fri Oct 16 2009 - 17:48:04 CDT)
- MDFF sim Problem Joshua Adelman (Fri Oct 16 2009 - 16:20:03 CDT)
- Re: Align membrane Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
- Align membrane Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
- vmd mailing list Roman Petrenko (Thu Oct 15 2009 - 17:14:10 CDT)
- Re: Water Sphere Solvation Peter Murphy (Tue Oct 13 2009 - 16:54:45 CDT)
- Problems with selecting atoms for representations Joseph Bylund (Tue Oct 13 2009 - 10:39:52 CDT)
- writing gromacs .trr format with nonorthorhomic cells Matt Watkins (Tue Oct 13 2009 - 07:05:27 CDT)
- FW: Disulfide bonds Andres Morales N (Tue Oct 13 2009 - 01:02:30 CDT)
- Disulfude bonds Andres Morales N (Tue Oct 13 2009 - 01:00:39 CDT)
- colour residues Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
- covalently bonded atoms politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
- catdcd Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
- format of pdb file Christine Horejs (Mon Oct 12 2009 - 09:04:51 CDT)
- Load struture form memory Nuno Sousa Cerqueira (Mon Oct 12 2009 - 06:06:47 CDT)
- Lipid Membrane Ale Gomez (Sun Oct 11 2009 - 22:58:08 CDT)
- mac tk widgets Nuno Sousa Cerqueira (Sat Oct 10 2009 - 21:13:15 CDT)
- VMD 1.8.7 CUDA on Mac OS X 10.6.1 Mengjuei Hsieh (Sat Oct 10 2009 - 18:23:52 CDT)
- Parameter file for protein siloxane interactions Nilesh Ingle (Thu Oct 08 2009 - 21:47:14 CDT)
- Problem using psfgen and carbohydrate charmm parameters. Alexandre Suman de Araujo (Thu Oct 08 2009 - 16:19:26 CDT)
- how to display the periodic box in VMD Lan He (Wed Oct 07 2009 - 17:51:41 CDT)
- Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 10:46:37 CDT)
- RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 13:29:10 CDT)
- RE: how to display the periodic box in VMD Axel Kohlmeyer (Thu Oct 08 2009 - 14:30:27 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Fri Oct 09 2009 - 01:49:07 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- CatDCD Desmond Support andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
- How to generate a monolayer in VMD Nilesh Ingle (Mon Oct 05 2009 - 18:55:37 CDT)
- How to translate my diffused protein back to COM? A D (Mon Oct 05 2009 - 18:20:15 CDT)
- Tracking atoms automatically Nanako Takahashi (Mon Oct 05 2009 - 11:52:37 CDT)
- distance of two center of mass Nicola Giacche' (Mon Oct 05 2009 - 04:36:37 CDT)
- Breaking a trajectory into separate files with tcl Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
- R.E.D.-III.3 tools release - q4md-forcefieldtools.org FyD (Sun Oct 04 2009 - 09:37:06 CDT)
- problem with psfgen Q=C5=CC=C1=CC=CF=D7_=E9=CC=D8=D1?= (Sat Oct 03 2009 - 05:35:24 CDT)
- Problems with Stride Martin K. Jones (Fri Oct 02 2009 - 12:18:41 CDT)
- Rx for VMD crashing PC? Ronald Salesky (Thu Oct 01 2009 - 21:57:00 CDT)
- how to load an external file to user field Sun Yicheng (Thu Oct 01 2009 - 10:28:39 CDT)
- multiseq and fasta files from pdb Vlad Cojocaru (Thu Oct 01 2009 - 04:26:01 CDT)
- Reading output of quantum packages and plotting orbitals Ignacio Fernndez Galvn (Wed Sep 30 2009 - 11:57:35 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernndez Galvn (Fri Oct 02 2009 - 03:01:36 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Fri Oct 02 2009 - 11:52:09 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernndez Galvn (Fri Oct 23 2009 - 03:29:22 CDT)
- Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 08:39:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernndez Galvn (Fri Oct 23 2009 - 09:29:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 10:21:07 CDT)
- Re: Reading output of quantum packages and plotting orbitals John Stone (Fri Oct 23 2009 - 09:49:38 CDT)
- Re: Reading output of quantum packages and plotting orbitals John Stone (Mon Oct 05 2009 - 21:10:49 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernndez Galvn (Fri Oct 02 2009 - 03:01:36 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- namd2.7b1, tip4p, and dummies Edward Lyman (Wed Sep 30 2009 - 01:36:06 CDT)
- trace cartoon etc displaying incompletely after alignment Rahul Mahajan (Tue Sep 29 2009 - 21:23:53 CDT)
- Representation problem Ahmet Bakan (Mon Sep 28 2009 - 16:22:36 CDT)
- model protein chain not displayed properly Elias Ahadi (Mon Sep 28 2009 - 13:38:32 CDT)
- H_Bonds Katherine Parra (Mon Sep 28 2009 - 12:53:21 CDT)
- Return value of a vector Stephanie Held (Mon Sep 28 2009 - 08:39:27 CDT)
- user field Sun Yicheng (Mon Sep 28 2009 - 08:36:34 CDT)
- text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 04:57:16 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
- Re: text timer in vmd animations John Stone (Mon Sep 28 2009 - 10:07:31 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:19:41 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:53:04 CDT)
- Re: text timer in vmd animations John Stone (Mon Oct 05 2009 - 22:22:10 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 10:40:38 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
- Paratool: QMTool::bondlist error message Sebastian Stolzenberg (Fri Sep 25 2009 - 21:53:27 CDT)
- Overlaying 2 structures madura_at_duq.edu (Fri Sep 25 2009 - 15:55:05 CDT)
- ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 05:40:17 CDT)
- Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 07:41:11 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 07:55:47 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 09:11:49 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:25:55 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 10:02:52 CDT)
- Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 11:03:47 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 11:55:11 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 12:16:30 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Frame creation Andreas Wagenmann (Thu Sep 24 2009 - 09:28:50 CDT)
- problem in reading .nc NETCDF FILE Genform GK (Wed Sep 23 2009 - 23:02:10 CDT)
- Web-based Flash/Quicktime 3-D VMD/Tachyon renderings of PDB structures John Stone (Wed Sep 23 2009 - 15:45:30 CDT)
- double bonds Taufik Al-Sarraj (Wed Sep 23 2009 - 13:13:12 CDT)
- trajectory analysis Barry Bickmore (Wed Sep 23 2009 - 11:39:08 CDT)
- "Lines" representation does not show Martin Lepk (Wed Sep 23 2009 - 10:49:33 CDT)
- Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- Re: "Lines" representation does not show John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
- Re: "Lines" representation does not show:remote Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
- Re: "Lines" representation does not show John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- atom selection Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
- [carlos.simmerling@gmail.com: ACS awards application announcements] John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
- Resize window from TCL Ondrej Marsalek (Mon Sep 21 2009 - 11:51:46 CDT)
- automated loading Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
- problem with density map obtained by volmap Ana Clia Vila Verde (Sun Sep 20 2009 - 08:01:12 CDT)
- Velocity Auto Correlation Goutham (Fri Sep 18 2009 - 14:53:42 CDT)
- water molecules around proteins Katherine Parra (Fri Sep 18 2009 - 12:04:04 CDT)
- Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" Jim Parker (Thu Sep 17 2009 - 19:33:51 CDT)
- Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" John Stone (Thu Sep 17 2009 - 21:34:36 CDT)
- Installing Multiseq updates Jeremias Corradi (Thu Sep 17 2009 - 08:42:51 CDT)
- Average structure and NamdEnergy Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
- Install VMD with plugins to NAMD Jim Parker (Wed Sep 16 2009 - 21:44:31 CDT)
- DLP Stereo and VR toolkit integration with vmd Simon Su (Wed Sep 16 2009 - 16:04:25 CDT)
- Average structure and NamdEnergy Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
- Reading new amber prmtop formats. Crowley, Michael (Wed Sep 16 2009 - 12:21:42 CDT)
- Re: segid WT100 is longer than 4 characters allowed by psf format Ramya Gamini (Wed Sep 16 2009 - 08:01:57 CDT)
- segid WT100 is longer than 4 characters allowed by psf format Luca Gelisio (Wed Sep 16 2009 - 03:34:16 CDT)
- PSF for AMBER top + crd files Goutham (Tue Sep 15 2009 - 16:35:23 CDT)
- rotate dihedral angle Jorgen Simonsen (Mon Sep 14 2009 - 14:08:21 CDT)
- CGTools error: atom select: cannot parse selection text... wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
- Segmentation fault on linux Fedora 11 Rob (Sun Sep 13 2009 - 19:16:28 CDT)
- VMD and NetCDF under Windows Vista 32bit Jan F. Totz (Sun Sep 13 2009 - 01:57:02 CDT)
- get coordinates Andres Morales N (Sat Sep 12 2009 - 12:05:35 CDT)
- "measure fit" problem Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
- Mistakes in the 1.8.7 User guide Myunggi Yi (Wed Sep 09 2009 - 10:18:40 CDT)
- psf for CNT? Ronald Salesky (Wed Sep 09 2009 - 09:55:05 CDT)
- Question about PSF generation NAMITA BHADRA (Tue Sep 08 2009 - 23:01:53 CDT)
- catdcd in Windows Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
- (no subject) Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
- How to select a hetatom while get rid of N-term ACE in atomselect Sujata Sovani (Tue Sep 08 2009 - 17:47:43 CDT)
- Main menu not compiled? Pieter van 't Hof (Fri Sep 04 2009 - 09:00:56 CDT)
- RE: namd-l: Re: rmsd matrix Andres Morales N (Thu Sep 03 2009 - 15:00:30 CDT)
- rmsd matrix Andres Morales N (Thu Sep 03 2009 - 07:45:06 CDT)
- Bond representation of coarse grained molecules BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
- Re: Bond representation of coarse grained molecules John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
- VMD on Suse 11.1 w/ NVIDIA dies. Bishop, Thomas C (Fri Sep 04 2009 - 17:52:35 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Sat Sep 05 2009 - 14:33:34 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Tue Sep 08 2009 - 10:57:12 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Tue Sep 08 2009 - 16:55:55 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Wed Sep 09 2009 - 09:17:55 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 16:53:19 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Thu Sep 10 2009 - 17:24:03 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 17:44:05 CDT)
- Re: Bond representation of coarse grained molecules Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
- Script error Negar Ashari Astani (Tue Sep 01 2009 - 11:58:32 CDT)
- VMD on MacOSX 10.6 Snow Leopard: fast Christoph Weber (Mon Aug 31 2009 - 18:31:11 CDT)
- 3D pdf problem Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
- superimpose two proteins with different residue numbers Soumya Lipsa Rath (Mon Aug 31 2009 - 02:55:13 CDT)
- VMD, MultiSeq, STAMP Damian Loska (Sun Aug 30 2009 - 11:42:14 CDT)
- User field Urahata (Fri Aug 28 2009 - 10:40:43 CDT)
- viewing MOs Dan thomas Major (Fri Aug 28 2009 - 09:47:34 CDT)
- superimposing proteins with non-similar coordinates Mark M Huntress (Wed Aug 26 2009 - 16:17:41 CDT)
- Re: superimposing proteins with non-similar coordinates Schreiner Eduard (Wed Aug 26 2009 - 16:33:39 CDT)
- Re: superimposing proteins with non-similar coordinates John Stone (Wed Aug 26 2009 - 16:31:46 CDT)
- Re: superimposing proteins with non-similar coordinates Christopher MacDermaid (Wed Aug 26 2009 - 17:17:34 CDT)
- rotating ligand Steve Seibold (Wed Aug 26 2009 - 14:58:19 CDT)
- drawing waterbox Narender Singh Maan (Wed Aug 26 2009 - 09:35:56 CDT)
- Bond in pbc condition Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
- selection for polar hydrogens only poker_at_physics.usyd.edu.au (Tue Aug 25 2009 - 22:13:26 CDT)
- tinkerxyz Mark M Huntress (Tue Aug 25 2009 - 19:21:48 CDT)
- problem with 1.8.7 installation Barbault Florent (Tue Aug 25 2009 - 04:50:41 CDT)
- Mac and cmd line Jorgen Simonsen (Mon Aug 24 2009 - 11:58:16 CDT)
- Moving Molecule Steve Seibold (Mon Aug 24 2009 - 10:37:42 CDT)
- using VMD 1.8.7 on a Mac Carolyn Phillips (Sun Aug 23 2009 - 15:13:40 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Mon Aug 24 2009 - 15:42:49 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 18:24:36 CDT)
- Re: using VMD 1.8.7 on a Mac Joshua D. Moore (Mon Aug 24 2009 - 21:49:10 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Tue Aug 25 2009 - 10:34:02 CDT)
- Re: using VMD 1.8.7 on a Mac Robert Brunner (Tue Aug 25 2009 - 12:00:11 CDT)
- Re: using VMD 1.8.7 on a Mac daniel aguayo (Tue Aug 25 2009 - 12:53:02 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Eric H. Lee (Fri Aug 21 2009 - 17:13:21 CDT)
- NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Carmen Valladares (Fri Aug 21 2009 - 16:26:04 CDT)
- VMD: 1.8.7 win32 opengl runtime error Guanglei Cui (Fri Aug 21 2009 - 09:14:56 CDT)
- Force extension from SMD log file snoze pa (Thu Aug 20 2009 - 17:25:20 CDT)
- Color bar Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
- Pyhton Mode Peyman Yamin (Thu Aug 20 2009 - 04:49:33 CDT)
- Mutator: Losing Chromophore Carmen Valladares (Wed Aug 19 2009 - 19:14:57 CDT)
- Render command not executed Nicolas SAPAY (Wed Aug 19 2009 - 02:22:18 CDT)
- VMD Tracking VRPN Christian Wohlschlager (Wed Aug 19 2009 - 02:01:49 CDT)
- Rendering polyhedra with POV-Ray Nicolas SAPAY (Tue Aug 18 2009 - 09:53:10 CDT)
- positioning of a compound Steve Seibold (Wed Aug 12 2009 - 14:48:23 CDT)
- Periodic Bonding Liang, Linus H. (Wed Aug 12 2009 - 08:44:19 CDT)
- Turn off the autobond feature in VMD Liang, Linus H. (Wed Aug 12 2009 - 08:27:55 CDT)
- VMD Periodic cells Florentina Tofoleanu (Wed Aug 12 2009 - 07:03:53 CDT)
- CUDA Support Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
- can we control the number and distribution of solvate molecular pxq ѩ (Wed Aug 12 2009 - 03:02:33 CDT)
- Re: namd-l: how to write a command to close vmd in shell script? Benjamin Bouvier (Mon Aug 10 2009 - 03:07:38 CDT)
- HRTEM Joshua D. Moore (Fri Aug 07 2009 - 02:20:45 CDT)
- How to compile the source of VMD1.8.7 on linux system Aurum Bai (Fri Aug 07 2009 - 00:10:40 CDT)
- NEW New Christian Wohlschlager (Thu Aug 06 2009 - 07:44:37 CDT)
- Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
- Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- clusters visualization with colours Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
- Re: clusters visualization with colours John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
- Re: Cionize on mac cuda John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
- Re: Cionize on mac cuda daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
- Re: Cionize on mac cuda John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
- Re: Cionize on mac cuda daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
- Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- Announce: VMD 1.8.7 released John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
- "mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val" Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
- Why the win_version of vmd1.86 can not change to python interpreter? Aurum Bai (Sat Aug 01 2009 - 08:21:06 CDT)
- vmd Linux 64 Christian Wohlschlager (Fri Jul 31 2009 - 03:29:04 CDT)
- visualization problem Srikanth Dhondi (Thu Jul 30 2009 - 21:58:27 CDT)
- Building polymer psf from monomer topology Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
- NAMDEnergy Plugin Andres Morales N (Tue Jul 28 2009 - 00:34:43 CDT)
- removed all proton in protein with vmd albert albert (Mon Jul 27 2009 - 01:40:34 CDT)
- PDB COORDINATES Edward P. Manning (Sun Jul 26 2009 - 19:08:28 CDT)
- Stripping out H20 Jehanzeb Hameed (Sun Jul 26 2009 - 18:24:33 CDT)
- File to benchmark a new GPU system luc Renambot (Sun Jul 26 2009 - 16:20:28 CDT)
- order parameter from trajectory Roman Petrenko (Fri Jul 24 2009 - 17:08:50 CDT)
- Lovyeou gumbart_at_ks.uiuc.edu (Fri Jul 24 2009 - 09:31:56 CDT)
- time-averaged RMSD per residue Dawn (Fri Jul 24 2009 - 08:06:08 CDT)
- question about atomselect and periodic condition Linchen Gong (Fri Jul 24 2009 - 05:44:41 CDT)
- Hydrogen Bonding energy Goutham (Thu Jul 23 2009 - 20:56:52 CDT)
- Loevyou gumbart_at_ks.uiuc.edu (Thu Jul 23 2009 - 16:55:17 CDT)
- stereo anaglyph Roman Petrenko (Thu Jul 23 2009 - 16:16:07 CDT)
- TkConsole not working Ziemys, Arturas (Thu Jul 23 2009 - 14:45:20 CDT)
- drawing bond for coarse grained model Sunjoo Lee (Thu Jul 23 2009 - 13:25:46 CDT)
- Save State Fails Carmen Valladares (Tue Jul 21 2009 - 18:57:00 CDT)
- could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Disable the set output Nicolas SAPAY (Thu Jul 23 2009 - 05:15:24 CDT)
- Re: Disable the set output Axel Kohlmeyer (Thu Jul 23 2009 - 07:45:34 CDT)
- Re: Disable the set output Nicolas Sapay (Thu Jul 23 2009 - 09:28:13 CDT)
- Re: Disable the set output Thomas C. Bishop (Thu Jul 23 2009 - 09:52:15 CDT)
- Re: Disable the set output Leonardo Trabuco (Sat Jul 25 2009 - 10:54:53 CDT)
- Re: Re: could not visualize DCD file downloaded from VMD website Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- insert a protein into a membrane Lixia Jin Day (Tue Jul 21 2009 - 13:41:21 CDT)
- of diet pills, like a racing heart or queasy stomach ltrabuco_at_ks.uiuc.edu (Tue Jul 21 2009 - 09:47:48 CDT)
- error using Molecule.save() (vmd python) Michael Kreim (Tue Jul 21 2009 - 06:49:44 CDT)
- IMD interface for VASP Michael Robbert (Mon Jul 20 2009 - 17:54:36 CDT)
- need convert when using VMD to make a movie under Mac Yongmei Pan (Mon Jul 20 2009 - 17:49:29 CDT)
- VMD on laptop with ATI Radeon 3650 Ramon Rocha (Mon Jul 20 2009 - 16:00:40 CDT)
- Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:04:25 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:43:38 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 13:16:31 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 15:43:56 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 16:19:05 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 10:39:36 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 11:23:34 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 12:21:14 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 12:29:49 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Thu Jul 23 2009 - 12:49:24 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 16:42:37 CDT)
- Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 08:46:05 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Axel Kohlmeyer (Fri Jul 24 2009 - 09:22:09 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 13:24:45 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 11:36:28 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Re PSF file generation karthigeyan karthigeyantp (Mon Jul 20 2009 - 07:34:51 CDT)
- VMD 1.8.7 installation problem Ajeeta kaushiki (Mon Jul 20 2009 - 06:55:41 CDT)
- Problem With Psfgen again avl211_at_lehigh.edu (Fri Jul 17 2009 - 13:53:49 CDT)
- error after changing of PYTHONPATH variable Michael Kreim (Fri Jul 17 2009 - 07:12:52 CDT)
- File conversion for from Amber to Charmm Yogesh Aher (Fri Jul 17 2009 - 04:34:55 CDT)
- Problems with psfgen avl211_at_lehigh.edu (Thu Jul 16 2009 - 16:06:31 CDT)
- algorithm for command *within* BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
- ied and gypython gurunath katagi (Thu Jul 16 2009 - 02:16:21 CDT)
- A problem on PBC yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
- HETATM records are written as ATOM Thomas Evangelidis (Wed Jul 15 2009 - 16:58:27 CDT)
- Natural WeightL0SS Solution ltrabuco_at_ks.uiuc.edu (Wed Jul 15 2009 - 17:35:35 CDT)
- Can I build a structure by VMD? Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
- .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
- python and vmd Jorgen Simonsen (Wed Jul 15 2009 - 04:23:12 CDT)
- scan interleaved stereo on Zalman M220W monitor Sinan Arslan (Tue Jul 14 2009 - 13:11:39 CDT)
- molecule jumps from one site to the other? uu zhu (Mon Jul 13 2009 - 21:11:52 CDT)
- getting other variables out of LAMMPS ascii dump files Dan Lussier (Mon Jul 13 2009 - 13:44:23 CDT)
- Be someone whom you have never been before with DrMaxMan ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
- Problem: I got a runtime error "CthCreate failed to create fiber!". Chuck (Sun Jul 12 2009 - 03:49:44 CDT)
- Need Guidance with pbctools Angelo Rossi (Sat Jul 11 2009 - 13:47:11 CDT)
- residue based CG model Xiang Yu (Fri Jul 10 2009 - 09:20:42 CDT)
- measure rmsf Alison Grinthal (Fri Jul 10 2009 - 08:31:26 CDT)
- A problem on SASA measure yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
- Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:00:29 CDT)
- Re: make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 11:14:15 CDT)
- Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:27:08 CDT)
- Re: make movie w/ VMD in SUSE environment Axel Kohlmeyer (Thu Jul 16 2009 - 11:40:03 CDT)
- make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- Need GAMESS logfiles for testing VMD's new QM interface saam (Thu Jul 09 2009 - 11:58:08 CDT)
- How to make a selection in atomselect using an element in a list? maria goranovic (Wed Jul 08 2009 - 10:39:39 CDT)
- LES problem Irene Newhouse (Tue Jul 07 2009 - 00:25:20 CDT)
- Make sure girls notice your package petefred_at_ks.uiuc.edu (Sat Jul 04 2009 - 22:12:43 CDT)
- NAMDenergy: problems on changing VMD version/platform Neelanjana Sengupta (Sat Jul 04 2009 - 11:17:44 CDT)
- GPL compatible PluginMgr/vmddlopen Roland Schulz (Sat Jul 04 2009 - 08:13:37 CDT)
- Hardware for NAMD / VMD machine Olve Peersen (Fri Jul 03 2009 - 01:26:11 CDT)
- Be the largest man around petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
- Manunlly Assign Secondary Structure (May Not Be Realistic) John C. H. Chao (Thu Jul 02 2009 - 06:00:07 CDT)
- superimposing proteins based on a few residues Irene Newhouse (Wed Jul 01 2009 - 15:59:33 CDT)
- Some VMD questions Steve Jensen (Tue Jun 30 2009 - 12:27:01 CDT)
- Coloring atoms by a general scalar Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
- Funny tcl/tk script behavior.... Alberto Sergio Garay (Tue Jun 30 2009 - 08:02:57 CDT)
- atom name can not exceed four characters in pdb and psf? accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
- Packed with Antioxidants . Acai Berry. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 21:30:17 CDT)
- Oprah certified wieght loss solution Acai.Berri. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 19:29:14 CDT)
- GPGPU Programming summer school at University of Tennessee, Aug 10-14. Axel Kohlmeyer (Mon Jun 29 2009 - 14:44:15 CDT)
- running vmd on computer node BIN ZHANG (Mon Jun 29 2009 - 12:55:08 CDT)
- selection update kumar prashanth (Fri Jun 26 2009 - 08:03:21 CDT)
- Problem using pbc wrap..... Alberto Sergio Garay (Fri Jun 26 2009 - 07:13:44 CDT)
- Curious about analytical capabilities of VMD Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- constant region selection for animation Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
- Re: regarding positioning of protein molecule Ramya Gamini (Thu Jun 25 2009 - 01:48:07 CDT)
- "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
- Multimodel PDB files with Different Models? Kevin Wu (Wed Jun 24 2009 - 21:05:30 CDT)
- residue index problem Jianhui Tian (Wed Jun 24 2009 - 15:51:54 CDT)
- trace the distance between center of mass of one certain residue and the other Naiyin Yu (Wed Jun 24 2009 - 14:59:14 CDT)
- Rejecting plugin... Gustavo Seabra (Wed Jun 24 2009 - 14:04:25 CDT)
- vmd error message in Fedora 11 snoze pa (Wed Jun 24 2009 - 11:04:15 CDT)
- Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
- vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Wed Jun 24 2009 - 15:24:32 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? Olaf Lenz (Thu Jun 25 2009 - 00:52:39 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Thu Jun 25 2009 - 01:06:02 CDT)
- vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
- Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
- bigdcd v3 available. testers needed. Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
- joystick, win32 simple interface Biff Forbush (Tue Jun 23 2009 - 18:32:57 CDT)
- VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card Baumert, Uwe Dr.rer.nat. (Mon Jun 22 2009 - 04:18:54 CDT)
- Plugins: plz add one more conversion to unit_conversion.h Rob (Sun Jun 21 2009 - 21:00:57 CDT)
- tag heuer rep watch for you; Forest Jefferson (Sat Jun 20 2009 - 05:44:49 CDT)
- porsche design is your style; Fletcher Quick (Thu Jun 18 2009 - 14:18:17 CDT)
- transformation matrix Thomas Evangelidis (Thu Jun 18 2009 - 02:55:52 CDT)
- "Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Thu Jun 18 2009 - 02:27:08 CDT)
- Wrong coordinates using guesscoord in psfgen - lipids poker_at_physics.usyd.edu.au (Wed Jun 17 2009 - 02:30:55 CDT)
- movie maker Alison Grinthal (Tue Jun 16 2009 - 09:44:48 CDT)
- Molscripts Tomek Wlodarski (Tue Jun 16 2009 - 08:54:22 CDT)
- using atomselect to write a set of atoms and not some residue whose residue numbers are in a list maria goranovic (Mon Jun 15 2009 - 10:31:26 CDT)
- "Save coordinates..." silently overwrites existing files... Rob (Mon Jun 15 2009 - 10:25:10 CDT)
- Memory allocation problem kumar prashanth (Mon Jun 15 2009 - 04:06:49 CDT)
- psfgen: auto none not working Ruchi Sachdeva (Mon Jun 15 2009 - 03:57:25 CDT)
- ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Mon Jun 15 2009 - 01:32:28 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 03:27:28 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 21:23:22 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Wed Jun 17 2009 - 10:59:23 CDT)
- vmdnumpy for IED... Cihan Aydin (Sun Jun 14 2009 - 17:42:36 CDT)
- Ho to save exactly the screen structure? Vctor (Sun Jun 14 2009 - 15:35:55 CDT)
- Tcl commands and X11 craig bullington (Fri Jun 12 2009 - 11:48:37 CDT)
- VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 09:48:29 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:36:49 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:45:37 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 11:17:22 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 11:33:47 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Wed Jul 15 2009 - 13:48:13 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
- FW: Unable to render electrostatic potential cube files with most non-HF densities Whiteside, Alexander (Thu Jun 11 2009 - 08:39:21 CDT)
- vmd cannot be launched after successful installation Stefano Meliga (Wed Jun 10 2009 - 10:58:15 CDT)
- Transparency settings Bjoern Olausson (Wed Jun 10 2009 - 09:13:13 CDT)
- NAMDEnergy Andres Morales N (Wed Jun 10 2009 - 08:59:51 CDT)
- plugin: can I load volumetric data as frames (i.e. timesteps)? Rob (Wed Jun 10 2009 - 03:11:34 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 08:48:26 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 09:49:59 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:04:09 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:06:53 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:24:26 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:36:41 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:44:13 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 09:43:20 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 10:09:03 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 11:12:17 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 11:28:26 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Axel Kohlmeyer (Wed Jun 10 2009 - 08:16:58 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- bonds not created as desired Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
- Re: Cannot load file for SASA analysis Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
- MSMS installation craig bullington (Mon Jun 08 2009 - 14:27:57 CDT)
- crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
- Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
- Re: Re: crystal eyes vmd John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- atom selection Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
- NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:24:33 CDT)
- NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:23:35 CDT)
- Building LPS membrane dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
- Vector corresponding to the long axis Navendu bhatnagar (Fri Jun 05 2009 - 17:26:16 CDT)
- disulphide bond formation gurunath katagi (Fri Jun 05 2009 - 10:14:11 CDT)
- debugging tool for atomselect Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
- Memory Problem with tcl/tk script...(Solved!) Alberto Sergio Garay (Thu Jun 04 2009 - 07:08:19 CDT)
- Energy Andres Morales N (Wed Jun 03 2009 - 21:50:41 CDT)
- Memory Problem with tcl/tk script...(3) Alberto Sergio Garay (Wed Jun 03 2009 - 14:17:07 CDT)
- Memory Problem with tcl/tk script...(2) Alberto Sergio Garay (Wed Jun 03 2009 - 12:54:53 CDT)
- vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:31:26 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 11:15:39 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 11:42:38 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 14:01:12 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Wed Jun 03 2009 - 02:36:51 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file Axel Kohlmeyer (Wed Jun 03 2009 - 08:16:06 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Wed Jun 03 2009 - 14:05:48 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 05 2009 - 11:04:08 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Mon Jun 08 2009 - 16:15:15 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 09:48:41 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 11:26:01 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 08:59:54 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 21:30:22 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file Marius Retegan (Fri Jun 12 2009 - 08:47:39 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 12 2009 - 09:44:29 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Fri Jun 12 2009 - 11:17:35 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
- APBS error : Cannot read output file Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
- VMD HOLE Result Hyundeok Song (Tue Jun 02 2009 - 08:49:20 CDT)
- Memory Problem with tcl/tk script... Alberto Sergio Garay (Tue Jun 02 2009 - 07:25:16 CDT)
- adding atoms to empty molecules Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
- VMD 1.8.7 Beta 5 -- Possible bug when typing in the VMD menu boxes. JT (Mon Jun 01 2009 - 17:29:07 CDT)
- VMD 1.8.7 beta 5 posted for download John Stone (Mon Jun 01 2009 - 16:11:31 CDT)
- Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
- Linking to molfile_plugin libraries David Tanner (Fri May 29 2009 - 13:02:59 CDT)
- Macbook and VMD Tk windows madura_at_duq.edu (Fri May 29 2009 - 06:49:08 CDT)
- VMD crash snoze pa (Thu May 28 2009 - 14:45:10 CDT)
- Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
- problem with dispdev KIRTANA S (Wed May 27 2009 - 15:59:41 CDT)
- main window missing? BIN ZHANG (Wed May 27 2009 - 15:17:40 CDT)
- Need testers for VMD/Tachyon volumetric coloring feature :-) John Stone (Wed May 27 2009 - 14:37:59 CDT)
- Angles in psf file KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
- Re: new problem John Stone (Tue May 26 2009 - 11:05:07 CDT)
- Heat capacity zizi moradi (Sun May 24 2009 - 16:39:45 CDT)
- Isosurface and Fieldlines Not rendered in colour Burak Cankurtaran (Tue May 26 2009 - 00:15:44 CDT)
- Plugin: molfile_plugin_t filename_extension; problem and bug... Rob (Sun May 24 2009 - 22:39:33 CDT)
- VMD crashes in VolumeSlice representation Suman Chakrabarty (Sun May 24 2009 - 13:09:10 CDT)
- Problem in loading data Jae Hyun Park (Sun May 24 2009 - 10:38:24 CDT)
- "Determine file type" list is far too long... Rob (Sun May 24 2009 - 04:45:30 CDT)
- solvent accessible surface area zizi moradi (Sat May 23 2009 - 13:11:19 CDT)
- Offset for frame ids in dcd trajectory DimitryASuplatov (Sat May 23 2009 - 11:11:09 CDT)
- Operations with MD frames - acquiring time infromation DimitryASuplatov (Sat May 23 2009 - 08:16:37 CDT)
- Question3 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 16:47:25 CDT)
- Question2 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 15:31:51 CDT)
- Question about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 10:06:54 CDT)
- abinit plugin for VMD not yet tried? Rob (Fri May 22 2009 - 02:08:15 CDT)
- bonds in .psf file KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
- angles and dihedrals in .psf file KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
- RMSF Maria Sanchez (Wed May 20 2009 - 23:14:17 CDT)
- pdb file generated not readable by tleap Yi Shang (Wed May 20 2009 - 14:49:26 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory Axel Kohlmeyer (Wed May 20 2009 - 14:05:27 CDT)
- Distance between COM for 2 chains for each frame of trajectory Florentina Tofoleanu (Wed May 20 2009 - 11:34:18 CDT)
- how to load a state from the command line maria goranovic (Wed May 20 2009 - 09:21:13 CDT)
- VMD 1.8.7b3 and desktop effects on Fedora 10 Nicolas Sapay (Wed May 20 2009 - 07:48:33 CDT)
- default colors MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
- Why is the 'antialias' option is grey? MyLinkka (Wed May 20 2009 - 05:37:47 CDT)
- Request for change in gaussian cube reader Xavier Cartoixa Soler (Tue May 19 2009 - 13:40:37 CDT)
- NVidia GeForce 3D Vision Christoph Weber (Tue May 19 2009 - 12:38:08 CDT)
- Align mistake Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
- Average strcuture Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
- New vmd Windows version crash MyLinkka (Tue May 19 2009 - 05:14:34 CDT)
- Re: New vmd Windows version crash John Stone (Tue May 19 2009 - 21:02:57 CDT)
- Adding two separate pdb files: Lipid Bilayer's with Protein's Lalit (Mon May 18 2009 - 18:07:34 CDT)
- VMD 1.8.7 beta 3 posted for download... John Stone (Mon May 18 2009 - 15:24:21 CDT)
- Model building questions YangMingjun (Mon May 18 2009 - 08:14:38 CDT)
- VMD as a python module Ondrej Marsalek (Mon May 18 2009 - 04:45:39 CDT)
- resolved [Re: vmd / python / f10] Cameron Mura (Sun May 17 2009 - 19:07:47 CDT)
- vmd / python / f10 Cameron Mura (Sat May 16 2009 - 18:43:18 CDT)
- Change requested in lammps plugin for VMD Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
- adding bonds with the mouse and writing psf Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
- a small bug in solvate 1.3 Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
- solvate v1.3 bug (Thu May 14 2009 - 07:43:23 CDT)
- How to color atom by charge loc duong ding (Thu May 14 2009 - 00:46:38 CDT)
- Translate Andres Morales N (Wed May 13 2009 - 22:25:22 CDT)
- Color problem. knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
- Can bonds radius be controlled by tcl command? accomp lin (Wed May 13 2009 - 03:54:47 CDT)
- VMD 1.8.7 beta 2 posted for download John Stone (Wed May 13 2009 - 14:09:40 CDT)
- Axes Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
- Sphere representaion with radius from pdb field "occupancy" or "temp. fac" Thomas Zauner (Wed May 13 2009 - 05:08:50 CDT)
- Alignment Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
- selecting waters Mark M Huntress (Mon May 11 2009 - 12:35:10 CDT)
- calculate charges of the binding site residues with psfgen Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
- How to compute excluded volume using volmap? Suman Chakrabarty (Sat May 09 2009 - 14:46:31 CDT)
- Paratool:Problems to load Hessian for charge distribution Sabine Leroch (Fri May 08 2009 - 11:12:05 CDT)
- volmap question Jian Dai (Fri May 08 2009 - 01:22:22 CDT)
- Thiol on gold KIRTANA S (Thu May 07 2009 - 23:57:48 CDT)
- vmd-read data from lammps H Q (Thu May 07 2009 - 20:26:53 CDT)
- namdenergy BIN ZHANG (Thu May 07 2009 - 17:26:23 CDT)
- BMP snapshot Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
- Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Wed May 06 2009 - 13:50:47 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- calculate charges of the binding site residues with psfgen Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Thu May 07 2009 - 07:31:25 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 09:44:06 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 John Stone (Thu May 07 2009 - 10:19:09 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 10:45:00 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- memory allocation issue Edward Lyman (Wed May 06 2009 - 13:37:04 CDT)
- Postdoc position in computational biophysics and nanotehnology Aleksei Aksimentiev (Tue May 05 2009 - 14:28:20 CDT)
- Satellite tobacco mosaic virus images making by VMD IJ (Tue May 05 2009 - 08:31:33 CDT)
- VMD 1.8.7beta1 doesn't close OpenGL window Olaf Lenz (Tue May 05 2009 - 07:53:57 CDT)
- Solvation energies using implicit ligand sampling Richard Daigle (Mon May 04 2009 - 12:21:41 CDT)
- VMD on Cray/CNL Jim Pfaendtner (Fri May 01 2009 - 01:03:07 CDT)
- autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
- NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 11:46:48 CDT)
- Re: NAMD setup for organic compounds Peter Freddolino (Thu Jul 09 2009 - 19:07:56 CDT)
- Re: NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 19:17:09 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Selection "@myselection" Olaf Lenz (Thu Apr 30 2009 - 04:25:05 CDT)
- Size of a protein Khaled Barakat (Wed Apr 29 2009 - 16:06:31 CDT)
- VMD 1.8.7 beta 1 posted for download... John Stone (Wed Apr 29 2009 - 15:06:27 CDT)
- hydrogen bonds tcl script politr_at_huji.ac.il (Tue Apr 28 2009 - 09:40:12 CDT)
- Installation issue Hugh Martin (Tue Apr 28 2009 - 08:09:04 CDT)
- Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
- Manipulating dcd using script in VMD DimitryASuplatov (Tue Apr 28 2009 - 01:26:05 CDT)
- Molefacture "namehead" error Sebastin Gutirrez (Mon Apr 27 2009 - 16:43:10 CDT)
- Calculating system net charge with tcl in VMD DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
- Re: Calculating system net charge with tcl in VMD Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
- Re: Calculating system net charge with tcl in VMD Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
- Re: Calculating system net charge with tcl in VMD Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
- Using clustering tool Andres Morales N (Fri Apr 24 2009 - 22:56:48 CDT)
- iTrajComp plugin. Andres Morales N (Fri Apr 24 2009 - 22:23:45 CDT)
- graphics for publication YangMingjun (Fri Apr 24 2009 - 10:14:23 CDT)
- Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 01:41:07 CDT)
- local packing density around a chemical group (say, a methyl group or a side chain) Krishnan, Marimuthu (Thu Apr 23 2009 - 10:15:44 CDT)
- installed plugin won't show up next time accomp lin (Thu Apr 23 2009 - 06:58:38 CDT)
- animate read and write A D (Wed Apr 22 2009 - 15:36:00 CDT)
- density profiles Raul Araya (Wed Apr 22 2009 - 11:24:31 CDT)
- Select atoms using coordinates Max (Wed Apr 22 2009 - 06:09:16 CDT)
- sys.argv, python and VMD Michael Kreim (Wed Apr 22 2009 - 03:50:59 CDT)
- setbonds BIN ZHANG (Tue Apr 21 2009 - 23:01:35 CDT)
- Spaceball and OSX JT (Tue Apr 21 2009 - 12:30:04 CDT)
- Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 09:25:08 CDT)
- Re: Secondary Structure Depiction L. Michel Espinoza-Fonseca (Tue Apr 21 2009 - 10:33:50 CDT)
- Re: Secondary Structure Depiction John Stone (Tue Apr 21 2009 - 10:51:48 CDT)
- Mol representation using coordinates Max (Tue Apr 21 2009 - 08:50:05 CDT)
- RMSD-gaps Karne, Sai Harish Babu (Mon Apr 20 2009 - 17:09:51 CDT)
- Solvent Accessible Surface Area zizi moradi (Sun Apr 19 2009 - 09:01:49 CDT)
- (no subject) zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
- Possible bug in vmd 1.8.7 alpha? Cesar Millan (Sat Apr 18 2009 - 00:09:57 CDT)
- coloring by atom type Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
- Re: namd-l: display all frames simultaneously Samuel Coulbourn Flores 花山 (Fri Apr 17 2009 - 11:35:11 CDT)
- pbctools on alpha version Dan Lussier (Fri Apr 17 2009 - 09:05:06 CDT)
- psf file for Doxorubicin mishacat_at_udm.ru (Thu Apr 16 2009 - 08:32:14 CDT)
- Multiseq error Karne, Sai Harish Babu (Wed Apr 15 2009 - 13:48:18 CDT)
- VRPN & PHANToM Omni Mark Cunningham (Wed Apr 15 2009 - 13:40:03 CDT)
- Problem in finding the HBonds Manishi Pandey (Wed Apr 15 2009 - 02:50:29 CDT)
- (no subject) Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
- RMSD of a protein shell, from the NAMD traj priyodorshi satpati (Sun Apr 12 2009 - 11:02:13 CDT)
- within, used with pbcwrap Neelanjana Sengupta (Fri Apr 10 2009 - 06:35:19 CDT)
- install plugin: problems with vmd_install_extension Steve Massard (Fri Apr 10 2009 - 04:35:45 CDT)
- Release of R.E.D. Server FyD (Thu Apr 09 2009 - 03:31:30 CDT)
- isosurface saving question YI Zhang (Tue Apr 07 2009 - 20:41:17 CDT)
- about TkConsole cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
- Any Mac (Intel) users still running 10.4.x??? John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
- OS X intel binary problem Dan Lussier (Sun Apr 05 2009 - 03:02:20 CDT)
- (no subject) Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
- ligand names Katherine Parra (Fri Apr 03 2009 - 10:35:54 CDT)
- questions about the electron density map YI Zhang (Fri Apr 03 2009 - 05:38:54 CDT)
- Problem with autoionize ? Kalavera_at_gmx.net (Thu Apr 02 2009 - 08:50:49 CDT)
- H-bonds Bernhard Knapp (Thu Apr 02 2009 - 06:27:25 CDT)
- VMD atomselect Steve Massard (Thu Apr 02 2009 - 05:57:37 CDT)
- pairInteraction and NAMDEnergy Goutham (Wed Apr 01 2009 - 17:05:52 CDT)
- paratool questions Lisa Brown (Tue Mar 31 2009 - 15:25:00 CDT)
- pKa and Temperature in MD Caterina Bernini (Tue Mar 31 2009 - 14:47:39 CDT)
- Re: vmd cvs compilation with CUDA fails John Stone (Tue Mar 31 2009 - 14:26:31 CDT)
- Re: cvs plugins do not compile because of errors in the sgsmooth.C John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
- helix axes Alison Grinthal (Tue Mar 31 2009 - 07:34:56 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 10:08:51 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 10:18:06 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 12:15:00 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 12:16:57 CDT)
- Re: helix axes Balazs Jojart (Tue Mar 31 2009 - 14:28:40 CDT)
- Re: helix axes Goutham (Tue Mar 31 2009 - 10:30:30 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- RE: helix axes Wei Huang (Tue Mar 31 2009 - 10:06:20 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- How to add heme to dowser plugin? Irene Newhouse (Mon Mar 30 2009 - 19:27:01 CDT)
- selection syntax Peter Jones (Mon Mar 30 2009 - 01:54:32 CDT)
- Graphical representation Francesco Pietra (Sun Mar 29 2009 - 13:59:15 CDT)
- Synchronization of statements in tcl script Raluca Mihaela ANDREI (Fri Mar 27 2009 - 12:44:32 CDT)
- openGL library Goutham (Thu Mar 26 2009 - 19:48:52 CDT)
- Searching for Number of Resname Ocar Campos (Thu Mar 26 2009 - 14:51:44 CDT)
- howto select stain reveal map Francesco Pietra (Thu Mar 26 2009 - 02:30:29 CDT)
- how to make a mivie by VMD Lan He (Wed Mar 25 2009 - 17:33:41 CDT)
- merging atomselection Goutham (Wed Mar 25 2009 - 16:54:33 CDT)
- how to block psfgen warning messages Thomas Evangelidis (Wed Mar 25 2009 - 16:11:12 CDT)
- Rosetta Academic Training Webinar Nir London (Wed Mar 25 2009 - 11:10:34 CDT)
- Command line argument Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
- External renderer not rendering colors from volumetric data Hfling Martin (Wed Mar 25 2009 - 08:34:24 CDT)
- vmd_plot Francesco Pietra (Wed Mar 25 2009 - 06:16:36 CDT)
- GTP topology file tiziano gallo cassarino (Fri Mar 20 2009 - 08:54:12 CDT)
- near clip Leandro Martnez (Fri Mar 20 2009 - 07:48:51 CDT)
- VMD 1.8.7 alpha 62 posted for all mainstream platforms... John Stone (Fri Mar 20 2009 - 03:30:48 CDT)
- accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
- accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
- building VMD on LINUX Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
- paratool tutorial/ complete user guide Lisa Brown (Mon Mar 16 2009 - 14:43:49 CDT)
- VMD needs your vote. Nir London (Mon Mar 16 2009 - 12:21:07 CDT)
- Posting messages to VMD-L truncates the empty spaces in lines JT (Sun Mar 15 2009 - 18:58:01 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 20:41:58 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Tue Mar 17 2009 - 22:05:43 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines Rogan Carr (Wed Mar 18 2009 - 16:12:37 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- rlwrap bug in Ubuntu Thomas Evangelidis (Sun Mar 15 2009 - 01:11:30 CDT)
- how to find the sign of the dihedral angle (full message). karthigeyan karthigeyantp (Sat Mar 14 2009 - 00:23:47 CDT)
- isosurface from pdb with beta field Peter Varnai (Fri Mar 13 2009 - 16:09:33 CDT)
- Problem with the script mono2poly.tcl Fabio Trovato (Fri Mar 13 2009 - 11:46:44 CDT)
- color update for xyz trajectory Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
- question of iso-surface in VMD graphical representations HeeSung Choi (Thu Mar 12 2009 - 13:04:01 CDT)
- Script problem Christopher Hartshorn (Thu Mar 12 2009 - 03:40:50 CDT)
- pops/popc lipid bilayer Jianping Lin (Wed Mar 11 2009 - 19:32:42 CDT)
- How to use " segment " in tcl script. accomp lin (Wed Mar 11 2009 - 01:31:13 CDT)
- obj export Raluca Mihaela ANDREI (Tue Mar 10 2009 - 03:27:40 CDT)
- regarding draw_arrow.tcl Falgun Shah (Mon Mar 09 2009 - 17:55:58 CDT)
- (no subject) Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
- vmd crashes bo baker (Mon Mar 09 2009 - 04:49:42 CDT)
- motion correlation map Falgun Shah (Sun Mar 08 2009 - 12:41:18 CDT)
- charmm binary ele. pot. Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
- the scripting interface Dawn (Sun Mar 08 2009 - 10:00:19 CDT)
- correlation Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
- problem with Dowser Irene Newhouse (Sat Mar 07 2009 - 19:50:35 CST)
- Save thousands... no one will know Olivia Reilly (Sat Mar 07 2009 - 11:23:52 CST)
- Your C0deine 0rder #247424 Fran Villa (Fri Mar 06 2009 - 19:51:11 CST)
- Charm force field for POPS lipid Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
- Re: adding lipid bilayers Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
- adding lipid bilayers Goutham (Fri Mar 06 2009 - 00:46:47 CST)
- use of spring tcl script Falgun Shah (Thu Mar 05 2009 - 20:49:30 CST)
- Script for calculating hydrogen-bonding energy Jianping Lin (Thu Mar 05 2009 - 19:19:28 CST)
- Hydrophobicity Scale Goutham (Thu Mar 05 2009 - 18:58:41 CST)
- Re: selection by residue Marius Retegan (Thu Mar 05 2009 - 08:29:28 CST)
- selection by residue Marius Retegan (Thu Mar 05 2009 - 06:47:53 CST)
- Seventh European Workshop in Drug Design - Siena Lucilla Angeli (Thu Mar 05 2009 - 06:42:36 CST)
- script to resolve trajectory "jumps" on Desmond dynamic Nicola Giacche' (Wed Mar 04 2009 - 10:15:03 CST)
- Problem in IMD with Compiled VMD Amr Rizq (Wed Mar 04 2009 - 06:00:58 CST)
- OpenGL Window Max (Wed Mar 04 2009 - 05:16:54 CST)
- How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Tue Mar 03 2009 - 17:30:33 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- Display issue on VMD for Linux Samuel Coulbourn Flores 花山 (Wed Mar 04 2009 - 19:43:59 CST)
- Re: Display issue on VMD for Linux Axel Kohlmeyer (Wed Mar 04 2009 - 21:55:04 CST)
- Re: Display issue on VMD for Linux Samuel Coulbourn Flores 花山 (Thu Mar 12 2009 - 16:54:11 CDT)
- Re: Display issue on VMD for Linux John Stone (Thu Mar 12 2009 - 17:02:21 CDT)
- Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- displaying residues within 5 A of ligand in vmd Falgun Shah (Tue Mar 03 2009 - 09:53:29 CST)
- Outline rendering style with Tachyon Heikki Kasnanen (Tue Mar 03 2009 - 02:20:08 CST)
- rmsd computation in text mode with a reference pdb Monika Sharma (Mon Mar 02 2009 - 01:18:30 CST)
- select atoms bo baker (Sun Mar 01 2009 - 22:18:42 CST)
- images for publication Falgun Shah (Sun Mar 01 2009 - 15:23:12 CST)
- Re: delete residues from trajectory bo baker (Sat Feb 28 2009 - 23:06:17 CST)
- paratool: gaussian output error Falgun Shah (Sat Feb 28 2009 - 17:15:25 CST)
- delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:46:20 CST)
- delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:44:06 CST)
- vmd error related to opengl FyD (Fri Feb 27 2009 - 18:12:02 CST)
- problem while integrating bigdcd into a namespace Thomas Evangelidis (Fri Feb 27 2009 - 16:19:03 CST)
- wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 16:01:30 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 20:47:32 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 21:24:13 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 22:01:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Mon Mar 02 2009 - 11:15:27 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
- (no subject) Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
- draw command with different material BIN ZHANG (Thu Feb 26 2009 - 23:31:08 CST)
- proline trans to cis Roman Petrenko (Thu Feb 26 2009 - 19:20:07 CST)
- Does command "animate delete all" free memory? Fred (Rui FENG) (Thu Feb 26 2009 - 15:00:53 CST)
- Displaying local water molecules throughout trajectory ben rodriguez (Thu Feb 26 2009 - 14:47:26 CST)
- Weighted RMS fit bug Jumper, John (Thu Feb 26 2009 - 12:21:15 CST)
- MM/PBSA in VMD Jianping Lin (Thu Feb 26 2009 - 12:12:46 CST)
- Help: Installation Problem Lee Amy (Wed Feb 25 2009 - 09:45:12 CST)
- to get angle from matrix of rotation around an axis Yinglong Miao (Wed Feb 25 2009 - 14:55:27 CST)
- volmap masks Dan Willenbring (Wed Feb 25 2009 - 14:17:32 CST)
- embed VMD in web page Xunlei Wu (Wed Feb 25 2009 - 11:21:39 CST)
- charm27 forcefield_topology Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
- question about "measure dihed" with COM points Lee, Hwan Kyu (NIH/NHLBI) [E] (Tue Feb 24 2009 - 19:09:27 CST)
- Re: question about "measure dihed" with COM points Axel Kohlmeyer (Tue Feb 24 2009 - 19:51:15 CST)
- Re: question about "measure dihed" with COM points J T (Tue Feb 24 2009 - 21:37:21 CST)
- Test Lee Amy (Tue Feb 24 2009 - 07:48:25 CST)
- info for computational chemistry awards, please forward Carlos Simmerling (Fri Feb 20 2009 - 10:22:27 CST)
- Adding a Water Box Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
- FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0* Chuck (Mon Feb 23 2009 - 15:52:05 CST)
- Can you show me an example of the .xyz file that is used to calculate the IR spectrum Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
- Membrane builder ?'s Christopher Hartshorn (Mon Feb 23 2009 - 13:09:16 CST)
- passing arguments to a vmd script which is executed using play or source mariagoranovic_at_gmail.com (Mon Feb 23 2009 - 04:24:14 CST)
- multiple colors for a single atom BIN ZHANG (Mon Feb 23 2009 - 00:05:50 CST)
- Is there a way to add custormized representation method to VMD Yang, Shaorui (Sun Feb 22 2009 - 22:42:19 CST)
- VMD exits immediately after starting on Windows xp Robert Mullen (Sun Feb 22 2009 - 17:35:46 CST)
- a way to create a nice image politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
- transparent background James Rustad (Fri Feb 20 2009 - 13:55:55 CST)
- converting trajectory files with catdcd in command line Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
- vmd intel compiler prebuild for 64 bit Roman Petrenko (Thu Feb 19 2009 - 19:29:09 CST)
- Unrecognized Chains in VMD for tetrameric protein ben rodriguez (Thu Feb 19 2009 - 18:14:55 CST)
- SMD question Edward Lyman (Thu Feb 19 2009 - 14:00:32 CST)
- "pbcwithin" keyword Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
- making .psf file based on .gro or .pdb Hideya Nakamura (Tue Feb 17 2009 - 18:19:18 CST)
- vmd with cuda1.0 Roman Petrenko (Mon Feb 16 2009 - 21:47:16 CST)
- change cylinder surface properties Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
- error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:23:32 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:54:45 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 12:10:11 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 13:14:31 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 09:44:02 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Wed Feb 18 2009 - 17:32:26 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 17:43:14 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Axel Kohlmeyer (Mon Feb 16 2009 - 12:26:19 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- Cannot read MSMS facet file BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
- The display windows is out of my screen G.H. Zuo (Sun Feb 15 2009 - 00:21:05 CST)
- about measuring volume of the binding site Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
- Membrane Proteins Tutorial Marcos Sotomayor (Fri Feb 13 2009 - 16:25:15 CST)
- Atom distances from trajotory bo baker (Thu Feb 12 2009 - 23:50:21 CST)
- Problem when labeling atoms on machine with intel X4500HD integreted graphic card Shi, Chuanyin (Thu Feb 12 2009 - 15:25:45 CST)
- installation Fernanda S. (Thu Feb 12 2009 - 13:08:19 CST)
- Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
- Re: installation John Stone (Sat Feb 14 2009 - 14:32:53 CST)
- Re: installation Fernanda S. (Sat Feb 14 2009 - 17:18:57 CST)
- Re: installation John Stone (Sat Feb 14 2009 - 19:34:29 CST)
- Re: installation Fernanda S. (Sun Feb 15 2009 - 08:05:10 CST)
- Re: installation Axel Kohlmeyer (Sun Feb 15 2009 - 12:46:34 CST)
- Re: installation John Stone (Sun Feb 15 2009 - 12:54:29 CST)
- Re: installation Fernanda S. (Sun Feb 15 2009 - 13:32:20 CST)
- Re: installation Ramon Crehuet (Fri Feb 13 2009 - 05:08:51 CST)
- Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
- Atom distances from trajotory bo baker (Thu Feb 12 2009 - 03:27:20 CST)
- Load multiple files bo baker (Wed Feb 11 2009 - 22:43:35 CST)
- problem Barbault Florent (Wed Feb 11 2009 - 02:41:52 CST)
- Flow Fields Roland Schulz (Tue Feb 10 2009 - 16:04:23 CST)
- How to specify processors for running VMD on a cluster? Yinglong Miao (Tue Feb 10 2009 - 10:45:27 CST)
- Equivalent Mouse Capabilities to Tracker CAVELib Amr Rizq (Mon Feb 09 2009 - 07:06:26 CST)
- multiplot : integration of undrawing command (?) Nadja Lederer (Thu Feb 05 2009 - 05:14:43 CST)
- "Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009 TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
- Take a look at jaxtr! Sudipta Sinha (Sun Feb 08 2009 - 22:20:40 CST)
- concatenate protein and 2 ligand files Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
- International opportunity robert (Fri Feb 06 2009 - 11:25:07 CST)
- VMD and IED on Windows XP Roland Schmucki (Thu Feb 05 2009 - 20:57:34 CST)
- Progress Bar for the Elapsed Time: rendering problem Suman Chakrabarty (Thu Feb 05 2009 - 16:42:20 CST)
- Render alpha-carbon trace as cartoon Patrick Buck (Thu Feb 05 2009 - 13:57:54 CST)
- trajectory path script Katherine Parra (Thu Feb 05 2009 - 11:00:12 CST)
- Atomselect in NAMD GUI bo baker (Thu Feb 05 2009 - 05:02:45 CST)
- "Sorry, this version VMD was compiled with Python support disabled" Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
- Apologies Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
- problem with "measure fit " Leontyev Igor (Tue Feb 03 2009 - 15:51:02 CST)
- property iterate over a range (representation / draw style) bonicoli_at_loria.fr (Tue Feb 03 2009 - 11:16:12 CST)
- rmsd matrix Andres Morales N (Tue Feb 03 2009 - 10:01:28 CST)
- deleting specific residues or atoms maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
- add a new representation style to VMD Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
- pictures with frame BIN ZHANG (Tue Feb 03 2009 - 01:40:32 CST)
- selecting set of residue Falgun Shah (Mon Feb 02 2009 - 14:44:45 CST)
- Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64) Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
- rmsd matrix Andres Morales N (Mon Feb 02 2009 - 10:59:50 CST)
- Link between the electrostatic potential on the surface and the grid.dx generated by APBS Emeline Leproult (Mon Feb 02 2009 - 09:57:02 CST)
- scriptable way to add hydrogens Thomas Evangelidis (Sat Jan 31 2009 - 16:25:16 CST)
- How to install the inorganicbuilder on Windows vista Hideya Nakamura (Thu Jan 29 2009 - 19:41:45 CST)
- Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem Katya Lyakhova (Wed Jan 28 2009 - 09:19:35 CST)
- [patch] potential CUDA acceleration - load-balancing on different CUDA devices Martin Aumller (Wed Jan 28 2009 - 06:35:19 CST)
- get a PDB file from DCD file Andres Morales N (Tue Jan 27 2009 - 07:58:23 CST)
- Rosetta Academic Training Workshop Nir London (Tue Jan 27 2009 - 07:05:12 CST)
- VMD & NAMD atoms naming convention? Javier Goicochea (Tue Jan 27 2009 - 03:05:09 CST)
- Note to VMD-L about posting attachments etc... John Stone (Mon Jan 26 2009 - 15:58:53 CST)
- Re: (Resend) Re: Breaking Bonds in VMD John Stone (Mon Jan 26 2009 - 15:55:29 CST)
- (no subject) Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
- (no subject) gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
- how to set color parameters differently for different molecules Thomas Evangelidis (Sun Jan 25 2009 - 12:09:10 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Re: how to set color parameters differently for different molecules John Stone (Thu Jan 29 2009 - 15:41:18 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 19:08:08 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Thu Jan 29 2009 - 20:35:35 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Re: how to set color parameters differently for different molecules MQO. Carlos Javier Núñez Aguero (Thu Jan 29 2009 - 19:03:40 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- VMD not loading in Suse 11.1 Andrew James Bennett (Fri Jan 23 2009 - 05:43:05 CST)
- Tcl script Leonardo Trabuco (Thu Jan 22 2009 - 00:01:39 CST)
- Tcl script varsha gautham (Wed Jan 21 2009 - 22:45:29 CST)
- accessing bonds angles dihedrals etc lists after PSF file is read into VMD Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Mon Jan 26 2009 - 15:42:17 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Breaking Bonds in VMD nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
- VMD Installation problem on Ubuntu 8.10 maria goranovic (Tue Jan 20 2009 - 08:27:12 CST)
- VMD plugin for Desmond IJ (Tue Jan 20 2009 - 08:23:13 CST)
- VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 20 2009 - 06:09:27 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Dan Wright (Tue Jan 20 2009 - 15:13:21 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 15:15:14 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 27 2009 - 11:35:15 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 27 2009 - 11:56:00 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Axel Kohlmeyer (Tue Jan 20 2009 - 08:56:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
- Fwd: Tcl script varsha gautham (Tue Jan 20 2009 - 02:11:56 CST)
- Problems with tcl/tk 8.5 Bernd Doser (Tue Jan 20 2009 - 02:08:05 CST)
- Download the newest version of VMD IJ (Mon Jan 19 2009 - 04:15:52 CST)
- How to get rid of default patch for NTER and CTER Jianping Lin (Sun Jan 18 2009 - 15:45:34 CST)
- Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... John Stone (Fri Jan 16 2009 - 15:34:21 CST)
- XYZ trajectory with different atom types? AA (Fri Jan 16 2009 - 13:21:15 CST)
- trans routine Edward Lyman (Fri Jan 16 2009 - 12:49:24 CST)
- Problem with Install bo baker (Fri Jan 16 2009 - 05:12:34 CST)
- ANGLES and DIHEDRALS ... location in VMD code? Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
- helicity score? BIN ZHANG (Thu Jan 15 2009 - 23:39:21 CST)
- Understanding topology files? Javier Goicochea (Thu Jan 15 2009 - 08:03:50 CST)
- loosing color when rendering molecular surface in VMD Michael Klein (Wed Jan 14 2009 - 20:17:23 CST)
- Data fields in vmd Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
- updating DCD frames in python Michael Kreim (Wed Jan 14 2009 - 09:55:06 CST)
- building loops riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
- Dobule and triple bonds Max (Tue Jan 13 2009 - 04:32:04 CST)
- center of mass Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
- Release of the R.E.D.-III.1 tools FyD (Mon Jan 12 2009 - 05:59:14 CST)
- VMD for Linux bo baker (Mon Jan 12 2009 - 05:14:50 CST)
- : about complexing protein and ligand! Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
- odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 13:26:57 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:37:10 CST)
- RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 18:21:59 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 18:50:51 CST)
- RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 19:49:29 CST)
- Re: odd render problems with Vista Eric H. Lee (Sun Jan 11 2009 - 20:53:13 CST)
- 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
- Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:27:58 CST)
- Re: odd render problems with Vista Benjamin Bouvier (Sun Jan 11 2009 - 14:20:04 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- putting a set of selections in a list or an array A D (Sun Jan 11 2009 - 12:14:08 CST)
- cube file question Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
- Functional Groups Max (Fri Jan 09 2009 - 04:51:39 CST)
- Calculating acyl chain order parameter profile on phospholipid vesicles Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
- which model in pdb vill VMD present? Steven W (Wed Jan 07 2009 - 12:21:59 CST)
- measure rmsf - command (step argument) Nadja Lederer (Wed Jan 07 2009 - 05:20:42 CST)
- Large dcd file jouko_at_berkeley.edu (Tue Jan 06 2009 - 16:31:46 CST)
- Problems with NewCartoon Cartoon Representations haosheng_at_hec.utah.edu (Tue Jan 06 2009 - 15:39:43 CST)
- eliminate atoms from psf and pdb files caterinabernini_at_unisi.it (Tue Jan 06 2009 - 11:40:15 CST)
- changing bond color jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
- tcl scripts in parallel in VMD? Maxim Paliy (Tue Jan 06 2009 - 08:14:41 CST)
- a problem on Red Hat Enterprise Linux 5 Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
- list of all the file type keywords for "mol load"? Maxim Paliy (Mon Jan 05 2009 - 10:00:20 CST)
- Changing the Secondary Structure of a Protein MIke S (Sun Dec 28 2008 - 01:18:23 CST)
- I need a bid trajectory please!!! Thomas Evangelidis (Thu Dec 25 2008 - 16:54:44 CST)
- Space distribution functions aneesh cna (Wed Dec 24 2008 - 23:08:03 CST)
- beta column format in PDB BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
- SBCG membrane Dolan, Michael (NIH/NIAID) [C] (Wed Dec 24 2008 - 11:59:25 CST)
- difficulties referencing a variable within a namespace Thomas Evangelidis (Sun Dec 21 2008 - 21:00:38 CST)
- Remove PBC Alessandro.Maiorana_at_roma2.infn.it (Sun Dec 21 2008 - 04:09:38 CST)
- VMD Animation example doesn't work... Alberto Sergio Garay (Fri Dec 19 2008 - 06:52:05 CST)
- CHARMM to AMBER trajectory conversion Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
- known issues with measure hbonds Harindar Keer (Thu Dec 18 2008 - 17:59:34 CST)
- How to get all the angle combinations? BIN ZHANG (Wed Dec 17 2008 - 23:07:16 CST)
- QM Geometry optimization bo baker (Tue Dec 16 2008 - 23:59:49 CST)
- VMD Animation example doesn't work... Alberto Sergio Garay (Tue Dec 16 2008 - 04:43:23 CST)
- defintion of alpha helix in vmd? Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
- haptics device "novint falcon" angel_at_cbuc.cl (Mon Dec 15 2008 - 09:13:31 CST)
- the exact definition of the keyword "radius" of the atom selection Lan Hua (Sat Dec 13 2008 - 14:10:40 CST)
- paratool dont recognize gaussian output angel_at_cbuc.cl (Fri Dec 12 2008 - 10:10:13 CST)
- VMD, VRPN, Phantom Desktop Nicholas Labello (Fri Dec 12 2008 - 09:43:19 CST)
- coloring of an item created by canvas Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
- Problem finding center of mass for all the frames ramya narasimhan (Wed Dec 10 2008 - 01:31:38 CST)
- How to get number of electrons of an atom in VMD? BIN ZHANG (Mon Dec 08 2008 - 15:31:42 CST)
- equilibrating a membrane patch Edward Lyman (Mon Dec 08 2008 - 13:25:30 CST)
- regarding writemol2 jani sahil (Sat Dec 06 2008 - 00:34:19 CST)
- reagsrding writemol2 jani sahil (Fri Dec 05 2008 - 00:11:42 CST)
- How to generate an index (.ind) file? Anirban Ghosh (Fri Dec 05 2008 - 00:07:49 CST)
- atom selection aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
- To find the residues on each side of the protein ramya narasimhan (Wed Dec 03 2008 - 02:42:33 CST)
- undrawing lines in multiplot? Nadja Lederer (Wed Dec 03 2008 - 02:29:57 CST)
- memory leak found Ondrej Marsalek (Tue Dec 02 2008 - 09:08:09 CST)
- Rotation of molecules Bjrn Windshgel (Tue Dec 02 2008 - 08:20:30 CST)
- Getting data as vector or matrix Iman Salehinia (Tue Dec 02 2008 - 00:48:29 CST)
- Running VMD on Mac OS X Christopher Share (Mon Dec 01 2008 - 23:23:08 CST)
- prepare initial structure oguz gurbulak (Mon Dec 01 2008 - 13:52:31 CST)
- script that reacts on movement of frameslider in vmd main Nadja Lederer (Mon Dec 01 2008 - 07:41:36 CST)
- how to prevent view reset on data load Ondrej Marsalek (Sat Nov 29 2008 - 10:52:45 CST)
- transparent or translucent backgrond for images Neelanjana Sengupta (Sat Nov 29 2008 - 06:18:46 CST)
- total number of donors and acceptors Roman Petrenko (Wed Nov 26 2008 - 18:27:16 CST)
- Desmond trajectory conversion to dcd format Dong Xu (Wed Nov 26 2008 - 16:24:57 CST)
- Other color scales than the predefined ones? Berit Hinnemann (Wed Nov 26 2008 - 07:00:17 CST)
- Re: bug in comments interpretation of vmd John Stone (Wed Nov 26 2008 - 11:13:49 CST)
- Re: multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 11:12:20 CST)
- Other color scales than the predefined ones Berit Hinnemann (Wed Nov 26 2008 - 09:52:23 CST)
- tcl fscript or Removeing protein flucutation karthigeyan karthigeyantp (Wed Nov 26 2008 - 05:45:33 CST)
- Movie of a xyz trajectory Roberto Gaspari (Wed Nov 26 2008 - 03:09:43 CST)
- multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 02:34:31 CST)
- drawing lines Ryan Pavlovicz (Tue Nov 25 2008 - 12:38:31 CST)
- unloading volumetric data Ondrej Marsalek (Mon Nov 24 2008 - 10:18:39 CST)
- CG bead definition BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
- entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:23:07 CST)
- entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:16:40 CST)
- Calculating volumes enclosed by SAS Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
- need tcl help, please Irene Newhouse (Fri Nov 21 2008 - 12:57:03 CST)
- view only parts of the loaded volumetric data Vlad Cojocaru (Fri Nov 21 2008 - 04:18:11 CST)
- Loading .vel file in VMD dipti lele (Thu Nov 20 2008 - 23:03:42 CST)
- question Wojciech Rajchel (Thu Nov 20 2008 - 11:08:31 CST)
- running a script Mark M Huntress (Thu Nov 20 2008 - 10:03:10 CST)
- how to get temperature fluctuations maria goranovic (Thu Nov 20 2008 - 08:36:06 CST)
- 3D Graphics Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
- [patch] Autodetection of formats supported by openbabel FX (Thu Nov 20 2008 - 05:07:17 CST)
- H-bond occupancy Irene Newhouse (Wed Nov 19 2008 - 12:23:58 CST)
- representation ColorID in Tcl David Tanner (Wed Nov 19 2008 - 11:25:42 CST)
- IED analysis IJ (Wed Nov 19 2008 - 02:19:19 CST)
- Autoionize plugin Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
- use configure.options Chen Chen (Mon Nov 17 2008 - 19:34:24 CST)
- General question about the memory usage of VMD tinifcarter_at_gmail.com (Mon Nov 17 2008 - 11:48:00 CST)
- how to run catdcd from within a proc Thomas Evangelidis (Mon Nov 17 2008 - 10:42:44 CST)
- Installation problems on openSUSE 10.3 Lawrence Wickert (Sat Nov 15 2008 - 20:22:44 CST)
- (no subject) Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
- How to set the default properties of drawing methods? Heikki Kasnanen (Thu Nov 13 2008 - 08:39:43 CST)
- combine.tcl error Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
- About Hydrogen bond calculation IJ (Thu Nov 13 2008 - 03:20:03 CST)
- wavefront and VMD Sandro Canavezzi de Abreu (Wed Nov 12 2008 - 14:07:36 CST)
- (no subject) Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
- OpenGL Display max_at_liaad.up.pt (Tue Nov 11 2008 - 04:03:12 CST)
- doubling a membrane Edward Lyman (Mon Nov 10 2008 - 16:42:13 CST)
- fasta2pdb Roman Petrenko (Mon Nov 10 2008 - 14:33:24 CST)
- movie Abu Naser (Sun Nov 09 2008 - 11:06:20 CST)
- usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:17:41 CST)
- usage for the pacth 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:10:17 CST)
- usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Fri Nov 07 2008 - 19:04:35 CST)
- load MSMS files into vmd Prevost Martine (Fri Nov 07 2008 - 09:29:34 CST)
- Multiple incompatible definitions warning Subramanian Vaitheeswaran (Thu Nov 06 2008 - 11:25:01 CST)
- RMSD error "Matrix: Warning: no convergence" Maria Sanchez (Thu Nov 06 2008 - 09:16:20 CST)
- Sequentially numbering atom names in pdb file Subramanian Vaitheeswaran (Wed Nov 05 2008 - 14:29:24 CST)
- CG Map Tool Syntax Error Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
- B factor calculation Ayşe Özlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
- Average position of atom set Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
- Psfgen : apply patches Nicolas Floquet (Tue Nov 04 2008 - 06:51:57 CST)
- conformations of a linker Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
- [Fwd: problems with manipulating control switches on VMS main menu] Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
- Per-frame 'graphics'? Benjamin Bouvier (Fri Oct 31 2008 - 10:46:03 CDT)
- VMD crashes on displaying NewRibbons or New Cartoon Jufang Shan (Fri Oct 31 2008 - 10:13:32 CDT)
- Visualizing multiple molecules max_at_liaad.up.pt (Fri Oct 31 2008 - 07:26:00 CDT)
- PMEpot units jirasak wong-ekkabut (Thu Oct 30 2008 - 15:10:05 CDT)
- problems with manipulating control switches on VMS main menu Piotr Cieplak (Wed Oct 29 2008 - 19:52:24 CDT)
- Render surface colored by electrostatic potential Adam Kraut (Tue Oct 28 2008 - 13:27:52 CDT)
- isosurface question Raluca Mihaela ANDREI (Tue Oct 28 2008 - 12:48:14 CDT)
- move matrix definition Edward Lyman (Tue Oct 28 2008 - 11:39:42 CDT)
- Free Trial of New Toxicity Prediction Software (LD50, MRDD, side effects) is now available Maxim Kholin (Tue Oct 28 2008 - 09:00:25 CDT)
- reading multiples molecules. no tengo nombre (Tue Oct 28 2008 - 05:05:19 CDT)
- A question about the namd energy plugin of VMD wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
- Camera in VMD!!! Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
- Warning: no convergence in alignment Jianhui Tian (Fri Oct 24 2008 - 17:02:08 CDT)
- PBCtools verison 2.3: how to obtain it? mon_sharma_at_research.iiit.ac.in (Fri Oct 24 2008 - 09:19:37 CDT)
- advanced selections (or explicit pair list) for measure gofr ? Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
- independent stereo display Petrica GASCA (Thu Oct 23 2008 - 11:39:07 CDT)
- create movie from multiple frames Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
- extraction of bound water molecules in a trajectory mon_sharma_at_research.iiit.ac.in (Thu Oct 23 2008 - 04:39:07 CDT)
- change the radius of atoms Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
- Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array' Perreault, Roger Edward (Wed Oct 22 2008 - 20:34:57 CDT)
- Re: A question about the plugin of salt bridge plugin Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
- dcd format JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
- Extract parameters of Shape-based Coarse Graining model from AA simulation dongsheng lei (Wed Oct 22 2008 - 01:54:54 CDT)
- convert THR and SER to the phosphorylated forms bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
- Querry dipti lele (Tue Oct 21 2008 - 08:42:18 CDT)
- fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 07:55:09 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 14:53:57 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 15:30:46 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 15:53:07 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Wed Oct 22 2008 - 04:56:03 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Wed Oct 22 2008 - 10:38:15 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- volmap Panagiota Georgoulia (Tue Oct 21 2008 - 06:17:51 CDT)
- (no subject) JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
- Selecting some atoms and changing the color of them Iman Salehinia (Tue Oct 21 2008 - 01:55:03 CDT)
- animated gif Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
- PSFGEN problem with URA residues Anirban Ghosh (Mon Oct 20 2008 - 06:27:06 CDT)
- feature request Tamara Rogers (Sun Oct 19 2008 - 12:38:18 CDT)
- Improving VMD performance on Linux? nbabcock_at_qis.ucalgary.ca (Sat Oct 18 2008 - 14:06:35 CDT)
- Out of town until November 1 John Stone (Thu Oct 16 2008 - 15:53:42 CDT)
- Catdcd? Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
- saving trajectories from the command line Jim Pfaendtner (Thu Oct 16 2008 - 07:28:00 CDT)
- Problem in text mode Wei Huang (Thu Oct 16 2008 - 00:25:07 CDT)
- velocity calculations Ryan Pavlovicz (Wed Oct 15 2008 - 10:18:50 CDT)
- Deleting frames / molecules does not free up memory! Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
- why atomselection "protein" can not choose all the protein atoms with different alternate locations? Lan Hua (Mon Oct 13 2008 - 16:49:07 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? Axel Kohlmeyer (Mon Oct 13 2008 - 18:23:35 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? John Stone (Tue Oct 14 2008 - 11:43:43 CDT)
- How to specify color based on dihedral angle? Suman Chakrabarty (Mon Oct 13 2008 - 13:09:53 CDT)
- Windows version: Loading/writing files Neelanjana Sengupta (Mon Oct 13 2008 - 07:53:41 CDT)
- CHARMM TO AMBER FORMAT CONVERT Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
- Error in "measure fit" Stephen Hicks (Sat Oct 11 2008 - 15:05:45 CDT)
- Density distribution plots mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
- STRIDE analysis of beta-sheets in VMD Tristan Bereau (Fri Oct 10 2008 - 15:28:33 CDT)
- Question about the Main Menu window display Alfredo Quevedo (Fri Oct 10 2008 - 14:15:47 CDT)
- loading python Ryan Pavlovicz (Thu Oct 09 2008 - 15:21:15 CDT)
- Density distribution plots mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
- Povray render cuts litorice,bond,cpk representations schwarz_at_titus.u-strasbg.fr (Thu Oct 09 2008 - 05:14:20 CDT)
- Fw: VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Wed Oct 08 2008 - 20:21:11 CDT)
- pbctools usage Subramanian Vaitheeswaran (Wed Oct 08 2008 - 08:21:10 CDT)
- How to visualize only parts of a molecular surface schwarz (Wed Oct 08 2008 - 08:11:47 CDT)
- Fullscreen mode in VMD Alexandr Bezginov (Tue Oct 07 2008 - 12:34:59 CDT)
- Vmd on MACOSX awkward msg at startup and error when running Ubq simulation Montoya, Jesus Gerardo Galaz (Mon Oct 06 2008 - 14:58:39 CDT)
- lipid tail selection BIN ZHANG (Sun Oct 05 2008 - 01:16:45 CDT)
- VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Fri Oct 03 2008 - 14:03:28 CDT)
- Pairwise RMSD Dong Xu (Fri Oct 03 2008 - 10:10:16 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 08:43:39 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 22:55:52 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 11:46:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:03:16 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 12:05:17 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:08:35 CDT)
- Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Anirban Ghosh (Sat Oct 04 2008 - 13:04:09 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 07:23:25 CDT)
- Problem with creating psf file from structure made by inorganic builder Anneta Tzampazi (Fri Oct 03 2008 - 04:43:19 CDT)
- TAB key in vmd terminal BIN ZHANG (Thu Oct 02 2008 - 23:32:00 CDT)
- suggested graphic card for Mac Pro Joaquim Rui Rodrigues (Thu Oct 02 2008 - 12:09:32 CDT)
- volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:18:38 CDT)
- volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:08:11 CDT)
- Does VMD support cfg file format? zhjjvmd (Wed Oct 01 2008 - 03:52:32 CDT)
- atom type Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
- water box Rudra Banerjee (Tue Sep 30 2008 - 03:48:37 CDT)
- periodic box image in tcl script Brian Kidd (Mon Sep 29 2008 - 11:27:39 CDT)
- question about sscache qwang_at_mail.uh.edu (Sun Sep 28 2008 - 19:33:02 CDT)
- (no subject) studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
- question about sscache qwang_at_mail.uh.edu (Fri Sep 26 2008 - 14:00:07 CDT)
- visualisation problem with bonds and PBC Jennifer Williams (Fri Sep 26 2008 - 09:32:42 CDT)
- Atoms numbers in VMD Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
- Creating a cuboid box to fit in atoms Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
- Re: psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 23:11:04 CDT)
- psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 22:45:49 CDT)
- How to render an image like this one with VMD? Dong Xu (Wed Sep 24 2008 - 20:58:12 CDT)
- water residence time L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 15:56:53 CDT)
- Re: Help, my molecule is being destroyed John Stone (Wed Sep 24 2008 - 15:46:14 CDT)
- Movie maker problem in VMD Ananyo Bandyopadhyay (Wed Sep 24 2008 - 11:11:14 CDT)
- weird behavior with RMSD Irene Newhouse (Tue Sep 23 2008 - 16:21:02 CDT)
- viewing an embryo markt_at_mskcc.org (Tue Sep 23 2008 - 14:04:41 CDT)
- Re: namd-l: solvate a molecule Chang, Christopher (Tue Sep 23 2008 - 11:57:58 CDT)
- Periodic BC Nd S (Mon Sep 22 2008 - 15:26:20 CDT)
- solvate a molecule Rudra Banerjee (Sat Sep 20 2008 - 01:08:03 CDT)
- rotation around phi/psi Roman Petrenko (Fri Sep 19 2008 - 21:05:24 CDT)
- Solvation Box Navdeep (Fri Sep 19 2008 - 16:43:25 CDT)
- Projection of a vector on to another. Katherine Parra (Fri Sep 19 2008 - 13:56:01 CDT)
- running simulation on dual core processor Mamta Mohan (Fri Sep 19 2008 - 10:44:27 CDT)
- Restarting a simulation $ Langevin Anirban Ghosh (Fri Sep 19 2008 - 07:17:12 CDT)
- difficulty in installing VMD on linux. Deepti Mishra (Fri Sep 19 2008 - 05:47:18 CDT)
- trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Fri Sep 19 2008 - 04:30:01 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
- Re: trouble with running vmd after installation , machine gets hung John Stone (Sun Sep 21 2008 - 02:36:43 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Sun Sep 21 2008 - 03:13:41 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Mon Sep 22 2008 - 18:45:30 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
- Error generating psf files Nd S (Thu Sep 18 2008 - 18:55:28 CDT)
- Solid Support Problem Christopher Hartshorn (Thu Sep 18 2008 - 13:33:07 CDT)
- Fw: warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 13:08:29 CDT)
- warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 10:11:33 CDT)
- counting gas molecules inside the nanotube mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
- Trouble installing VMD on LINUX machine Gregor Kladnik (Thu Sep 18 2008 - 06:43:14 CDT)
- Re: problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 03:29:07 CDT)
- psfgen problem Rudra Banerjee (Thu Sep 18 2008 - 01:45:55 CDT)
- problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 01:12:44 CDT)
- apbs electrostatics James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
- solvation Mamta Mohan (Wed Sep 17 2008 - 13:28:55 CDT)
- simulation image question Mamta Mohan (Wed Sep 17 2008 - 12:42:34 CDT)
- problem downloading VMD 1.8.6 source code Lai, Massimo (Wed Sep 17 2008 - 09:59:40 CDT)
- Interface Propensity bo baker (Wed Sep 17 2008 - 05:56:20 CDT)
- regarding rotating dihedral jani sahil (Tue Sep 16 2008 - 22:26:17 CDT)
- Installing VMD on Fedora Neelanjana Sengupta (Tue Sep 16 2008 - 08:25:54 CDT)
- parallel VMD Benjamin Stauch (Tue Sep 16 2008 - 07:47:16 CDT)
- electrostatic potential Raluca Mihaela ANDREI (Tue Sep 16 2008 - 03:28:02 CDT)
- Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- Re: electrostatic potential John Stone (Sat Sep 20 2008 - 02:19:15 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Wed Sep 24 2008 - 10:46:54 CDT)
- Re: electrostatic potential John Stone (Wed Sep 24 2008 - 10:50:29 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Fri Sep 26 2008 - 09:38:52 CDT)
- Re: electrostatic potential John Stone (Mon Sep 29 2008 - 16:57:39 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- extract centers et radii of beads model Matthieu Chavent (Mon Sep 15 2008 - 13:25:13 CDT)
- Fwd: ACS awards John Stone (Mon Sep 15 2008 - 12:53:34 CDT)
- Tachyon render and Tcl scripting Shay Amram (Mon Sep 15 2008 - 11:42:00 CDT)
- How to ionize a Shape Based CG Model? Anirban Ghosh (Mon Sep 15 2008 - 08:09:07 CDT)
- Alias histidine residue Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
- a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ? Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
- problems with VMD under linux/64-bit machine Irene Newhouse (Fri Sep 12 2008 - 15:17:56 CDT)
- How to use Inorganic Builder Nd S (Fri Sep 12 2008 - 03:19:12 CDT)
- Rendering problem lillestolen (Thu Sep 11 2008 - 14:16:29 CDT)
- Calculating the torsion angles in nucleic acids mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
- Measure hbonds equivalent in Python interface? Chang, Christopher (Wed Sep 10 2008 - 18:52:43 CDT)
- Volume slice: slice color pontes_at_if.usp.br (Wed Sep 10 2008 - 10:31:55 CDT)
- long bonds Marcelo Carignano (Wed Sep 10 2008 - 07:35:36 CDT)
- problems with autopsf & psfgen Irene Newhouse (Tue Sep 09 2008 - 13:50:10 CDT)
- How to generate more segments? mishacat_at_udm.ru (Tue Sep 09 2008 - 01:30:05 CDT)
- Extensions menu is blank Janet Jacobsen (Mon Sep 08 2008 - 18:46:07 CDT)
- saving charges snoze pa (Mon Sep 08 2008 - 12:14:15 CDT)
- feedback on pc-over-ip technology? Tru Huynh (Mon Sep 08 2008 - 10:40:24 CDT)
- Concerning protein rotation Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
- Superimposition: atomselect for reverse topology guillaume.santini_at_free.fr (Sat Sep 06 2008 - 09:34:52 CDT)
- generate psf structure Rudra Banerjee (Sat Sep 06 2008 - 04:15:25 CDT)
- how to draw the bonds in VMD? Alfred Shaohui Zheng (Sat Sep 06 2008 - 03:07:16 CDT)
- Protein coordinate rotation ianboru_at_email.arizona.edu (Fri Sep 05 2008 - 12:40:48 CDT)
- Running without interface Emily Moore (Thu Sep 04 2008 - 11:29:02 CDT)
- DIHE in topology file politr_at_huji.ac.il (Thu Sep 04 2008 - 02:31:52 CDT)
- CONECT Records in .pdb file - bonds not getting plotted Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
- newbie issues markus mooslechner (Tue Sep 02 2008 - 13:39:19 CDT)
- pbc join Edward Lyman (Tue Sep 02 2008 - 13:34:46 CDT)
- Is position dependent color possible? Suman Chakrabarty (Tue Sep 02 2008 - 12:17:59 CDT)
- Merge psf and pdb max_at_liaad.up.pt (Tue Sep 02 2008 - 04:28:53 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 10:46:07 CDT)
- solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 13:54:47 CDT)
- Re: solvating a water molecule John Stone (Tue Sep 02 2008 - 16:16:49 CDT)
- Re: solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 22:35:50 CDT)
- Re: solvating a water molecule John Stone (Mon Sep 08 2008 - 11:41:45 CDT)
- Re: solvating a water molecule gaurav nandrajog (Tue Sep 09 2008 - 01:01:33 CDT)
- Re: solvating a water molecule John Stone (Tue Sep 09 2008 - 01:48:46 CDT)
- Re: Merge psf and pdb bo liu (Wed Sep 03 2008 - 00:17:13 CDT)
- Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- Py_atomsel.C: invalid conversion Chang, Christopher (Fri Aug 29 2008 - 13:01:04 CDT)
- algorithm for finding center of mass of the side chains in the protein aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
- Calculating pocket volume ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
- TXT program editor Alejandro Ortega (Thu Aug 28 2008 - 14:43:14 CDT)
- Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 17:51:39 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 18:13:01 CDT)
- Re: TXT program editor bo liu (Fri Aug 29 2008 - 03:17:57 CDT)
- Re: TXT program editor Suman Chakrabarty (Fri Aug 29 2008 - 08:38:29 CDT)
- Re: TXT program editor Peter Freddolino (Fri Aug 29 2008 - 09:34:29 CDT)
- Re: TXT program editor L. Michel Espinoza-Fonseca (Fri Aug 29 2008 - 10:58:59 CDT)
- Re: TXT program editor Alejandro Ortega (Fri Aug 29 2008 - 13:11:13 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 15:50:21 CDT)
- Re: TXT program editor Sabuj Pattanayek (Thu Aug 28 2008 - 17:03:11 CDT)
- Re: namd-l: TXT program editor Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
- Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
- diffusion coefficient from rmsd Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
- HOLE PROGRAM Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
- catDCD Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
- segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
- Failure to open PDB files hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
- resid of water that is hydrogen bonded nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
- measure gofr - how is g(r) normalised? Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
- Python callbacks in VMD James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
- Inorganic Builder Plugin max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
- Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 12:21:11 CDT)
- how to call dssp in a script Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
- Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
- RMSD SCRIPT Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
- LAMMPS Trajectory Bond Specification nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
- axes Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
- renumbering residues Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
- label all residues Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
- catDCD- convert DCD format Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
- protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
- rmsd Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
- problem controlling orientation of the simulation box drawn by pbctools shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
- save selected residues bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
- backbone dihedral angles over trajectory Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
- request ability to append in CatDCD (and NAMD) Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
- Depth Cueing and dispdev none Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
- VMD files to SDF max_at_liaad.up.pt (Thu Aug 07 2008 - 05:20:59 CDT)
- Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
- NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
- How to reduce memory usage of a script? David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
- How to embed 3-D image into powerpoint Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
- suggested video card for linux Burcin Temel (Mon Aug 04 2008 - 07:32:03 CDT)
- SURF and broken surface Vivek Sharma (Fri Aug 01 2008 - 23:16:14 CDT)
- ionize with VMD a TOP file rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
- vmd-rmsd-color-tool Bernhard Knapp (Fri Aug 01 2008 - 02:27:48 CDT)
- Re: namdenergy and simulation with amber ff Alan (Fri Aug 01 2008 - 02:05:23 CDT)
- problem using pbc wrap: broken molecule Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
- Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
- VMD crasch Lixia Jin Day (Thu Jul 31 2008 - 15:58:28 CDT)
- VMD with amber rst7 and parm7 files Alan (Thu Jul 31 2008 - 03:26:33 CDT)
- Hot repl1ca w4tches from 2008 Villa Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
- How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
- g(r) Rudra Banerjee (Wed Jul 30 2008 - 12:13:40 CDT)
- 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
- tcl script problem with "atomselect' combined with "measure fit ...order" Loison Claire (Tue Jul 29 2008 - 09:16:36 CDT)
- Query Kaur, Tarandeep (Tue Jul 29 2008 - 07:55:49 CDT)
- Multiseq refusing to load a structure due to taxonomy problem Robison, Keith (Tue Jul 29 2008 - 08:22:24 CDT)
- periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:46:09 CDT)
- Re: periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
- solvating protein, fixed residue Rudra Banerjee (Mon Jul 28 2008 - 13:01:56 CDT)
- water box...density!!! Rudra Banerjee (Mon Jul 28 2008 - 05:02:55 CDT)
- solvation and box size Sue Legge (Mon Jul 28 2008 - 01:25:43 CDT)
- translation/transformation Roman Petrenko (Sat Jul 26 2008 - 23:31:36 CDT)
- how to create dityrosine links Roman Petrenko (Sat Jul 26 2008 - 17:47:52 CDT)
- Python for OS X Hans Martin Senn (Fri Jul 25 2008 - 10:19:38 CDT)
- question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Margaret S. Cheung (Fri Jul 25 2008 - 08:38:20 CDT)
- Slow mail deliver for next day or so... John Stone (Fri Jul 25 2008 - 15:15:09 CDT)
- membrane plugin | lipid structures Jufang Shan (Fri Jul 25 2008 - 11:50:18 CDT)
- Get your w4tch now Villa Joan Winslow (Thu Jul 24 2008 - 04:40:10 CDT)
- questions relating to VolMapTool bo liu (Wed Jul 23 2008 - 02:35:18 CDT)
- rdf for big systems Valeria Molinero (Tue Jul 22 2008 - 16:23:04 CDT)
- vecsub command Katherine Parra (Tue Jul 22 2008 - 11:03:42 CDT)
- Selecting the sides of a benzene ring Ignacio Fernndez Galvn (Tue Jul 22 2008 - 06:30:21 CDT)
- Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fernndez Galvn (Wed Jul 23 2008 - 02:39:23 CDT)
- Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
- Re: Selecting the sides of a benzene ring John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fernndez Galvn (Wed Jul 30 2008 - 02:24:58 CDT)
- Re: Selecting the sides of a benzene ring John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fernndez Galvn (Wed Jul 23 2008 - 02:39:23 CDT)
- Re: Selecting the sides of a benzene ring Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
- Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
- Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
- Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
- Re: Problem to find the number of frames of a trajectory John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
- Periodic image and transformation matrix Cesar Avila (Mon Jul 21 2008 - 19:20:06 CDT)
- Missing angles and dihedrals Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
- You can s4ve 80% Villa Norberto Martinez (Mon Jul 21 2008 - 01:18:56 CDT)
- Selecting atoms that have real SASA greater than 0, Not using "Surface" Christopher Gillespie (Sun Jul 20 2008 - 16:28:04 CDT)
- Parametrization of hydrogen sulfide Raul Araya (Fri Jul 18 2008 - 17:54:45 CDT)
- real coordinates Maria Sanchez Farran (Thu Jul 17 2008 - 21:40:46 CDT)
- vmd MacOSX using dispdev Brian Kidd (Thu Jul 17 2008 - 18:08:03 CDT)
- autopsf from console brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
- VMD Does not start on my MacBook Dr. Seth Olsen (Wed Jul 16 2008 - 21:15:57 CDT)
- Tetrahedral representation FX (Wed Jul 16 2008 - 17:20:22 CDT)
- Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
- Creating a VMD movie from a Tcl script Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Problem writing trajectory to "crd" (Amber) format? Ian (Wed Jul 16 2008 - 04:43:24 CDT)
- Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
- problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 12:50:58 CDT)
- Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:39:06 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:44:13 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:53:54 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:21:57 CDT)
- Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- pick atom id script Abu Naser (Fri Jul 11 2008 - 06:07:05 CDT)
- purple bacteria and psfgen brosbam_at_berkeley.edu (Tue Jul 15 2008 - 12:37:30 CDT)
- Fwd: PDB Bonds versus "distance" bonds Sergey Ivanov (Tue Jul 15 2008 - 10:49:43 CDT)
- Visualizing History file from DL_POLY mahesh naalla (Mon Jul 14 2008 - 11:43:43 CDT)
- tachyon rendering on black background figure Lixia Jin Day (Fri Jul 11 2008 - 13:06:30 CDT)
- QR factorization for structural alignment Dong Xu (Thu Jul 10 2008 - 17:30:39 CDT)
- (no subject) Abu Naser (Thu Jul 10 2008 - 10:43:17 CDT)
- building an uncoming sulfide bridge Jim Pfaendtner (Thu Jul 10 2008 - 08:56:32 CDT)
- contour plots Aaron.Oakley_at_csiro.au (Wed Jul 09 2008 - 22:50:54 CDT)
- Inorganic Builder Plugin Renata KWIECIEN (Wed Jul 09 2008 - 02:56:17 CDT)
- I'm back.. John Stone (Tue Jul 08 2008 - 16:24:12 CDT)
- measure forces applied on VMD S.K. Ghosh (Mon Jul 07 2008 - 16:18:17 CDT)
- trajectory to xyz file. Katherine Parra (Mon Jul 07 2008 - 13:16:30 CDT)
- Newbie Questions Paul Dennis Simonson (Sun Jul 06 2008 - 21:15:13 CDT)
- QR factorization for structural alignment Dong Xu (Sat Jul 05 2008 - 17:06:29 CDT)
- Maximum velocities Alejandro Ortega (Thu Jul 03 2008 - 16:03:13 CDT)
- Dihedrale angles in VMD Jorgen Simonsen (Thu Jul 03 2008 - 07:43:07 CDT)
- Loading Problem hirdesh kumar (Thu Jul 03 2008 - 06:27:44 CDT)
- ResdueType and hydrophobicity scale Giovanni Bellesia (Wed Jul 02 2008 - 18:16:29 CDT)
- The maximal size which can be displayed by VMD? Fred (Rui FENG) (Wed Jul 02 2008 - 16:06:18 CDT)
- VMD Mutator, which side chain rotamer? S. Jamal Rahi (Wed Jul 02 2008 - 07:30:32 CDT)
- VMD Mutator, which side chain rotamer? S. Jamal Rahi (Wed Jul 02 2008 - 07:20:52 CDT)
- VMDMODULATERIBBON or sausage representation Tim Meyer (Tue Jul 01 2008 - 13:38:28 CDT)
- rmsd per residue Alberto Sergio Garay (Tue Jul 01 2008 - 05:36:46 CDT)
- rmsd per residue Michal Kolinski (Mon Jun 30 2008 - 10:19:40 CDT)
- Error using namdstat.tcl script S.K. Ghosh (Mon Jun 30 2008 - 10:51:20 CDT)
- Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd James Irving (Sun Jun 29 2008 - 21:14:14 CDT)
- Problem of Movie Maker Plugin lei wang (Sat Jun 28 2008 - 05:41:29 CDT)
- mutate by D-residues... Yasser Almeida Hernndez (Fri Jun 27 2008 - 16:45:00 CDT)
- mutate by D-residues... Yasser Almeida Hernndez (Fri Jun 27 2008 - 16:44:25 CDT)
- select cylindrical slab dimka (Fri Jun 27 2008 - 12:08:41 CDT)
- Compiling from source on Mac OS X 10.5 Marylou Kunkle (Fri Jun 27 2008 - 11:12:37 CDT)
- vmd shuts itself down A D (Thu Jun 26 2008 - 19:20:58 CDT)
- how to make a movie of 2 or more trajectories parth singh (Thu Jun 26 2008 - 15:59:08 CDT)
- How to delete anwanted waters in a special area ? Leonhard Henkes (Wed Jun 25 2008 - 07:31:10 CDT)
- On solvate plugin S.K. Ghosh (Mon Jun 23 2008 - 07:22:06 CDT)
- On solvate plugin S.K. Ghosh (Mon Jun 23 2008 - 07:23:00 CDT)
- How to visualize iron and chlorine properly. wangyong_at_dicp.ac.cn (Mon Jun 23 2008 - 19:44:35 CDT)
- Inquiry concerning the plugin "Inorganic builder" Anneta Tzampazi (Mon Jun 23 2008 - 05:23:46 CDT)
- how to export into postscript with MultiPlot in tcl mode? Sebastian Stolzenberg (Sun Jun 22 2008 - 19:01:53 CDT)
- vmd/vista32b/zalman M220 stereo? Michael Galloway (Fri Jun 20 2008 - 16:03:46 CDT)
- enantiomers Ed Lowe (Fri Jun 20 2008 - 08:38:06 CDT)
- Volume slice color scale Ignacio Fernndez Galvn (Fri Jun 20 2008 - 04:15:39 CDT)
- SpaceNavigator test builds (last note before I go offline!) John Stone (Fri Jun 20 2008 - 02:04:50 CDT)
- Away from VMD-L/email until July 8th... John Stone (Thu Jun 19 2008 - 19:50:06 CDT)
- Discrepancy between colours when coloured by timestep and Tachyon rendered Tim Carpenter (Thu Jun 19 2008 - 12:48:40 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:25:49 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered Tim Carpenter (Thu Jun 19 2008 - 13:52:30 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:54:40 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
- Print and save DLPOLY HISTORY plots mahesh naalla (Thu Jun 19 2008 - 12:15:50 CDT)
- displaying hydrogen bonds when hydrogens are not available Y. U. Sasidhar (Thu Jun 19 2008 - 07:34:23 CDT)
- Labelling Coordinates (not Atoms) Anthony Ivetac (Wed Jun 18 2008 - 17:52:09 CDT)
- IED Vahdati N. (Wed Jun 18 2008 - 10:26:37 CDT)
- PSF works in NAMD but not in VMD Esben A. Gad (Wed Jun 18 2008 - 03:17:04 CDT)
- Re: PSF works in NAMD but not in VMD Peter Freddolino (Wed Jun 18 2008 - 06:53:50 CDT)
- Re: PSF works in NAMD but not in VMD Esben A. Gad (Fri Jun 20 2008 - 06:05:22 CDT)
- Re: Re: PSF works in NAMD but not in VMD Peter Freddolino (Fri Jun 20 2008 - 08:04:24 CDT)
- Re: Re: PSF works in NAMD but not in VMD Axel Kohlmeyer (Fri Jun 20 2008 - 09:57:37 CDT)
- Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Mon Jun 23 2008 - 07:20:08 CDT)
- Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Tue Jun 24 2008 - 03:08:07 CDT)
- Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Wed Jun 25 2008 - 06:42:53 CDT)
- specify a rtf file when generating a psf file. Nicolas Sapay (Tue Jun 17 2008 - 13:46:22 CDT)
- render "color by volume" Gerald Mathias (Tue Jun 17 2008 - 13:27:15 CDT)
- opening gromacs .gro file gives warning messsage and does not display the molecule jake wernik (Mon Jun 16 2008 - 20:19:52 CDT)
- Drawing a line between two atoms Marx Gomes Van der Linden (Mon Jun 16 2008 - 17:10:12 CDT)
- Question: Too many arguments Leonhard Henkes (Mon Jun 16 2008 - 08:24:15 CDT)
- problem with namdstats.tcl sudipta sinha (Sun Jun 15 2008 - 01:51:11 CDT)
- Electrostatic - PMEpot daniel aguayo (Fri Jun 13 2008 - 12:23:22 CDT)
- About occupancy volume maps Ignacio Fernndez Galvn (Fri Jun 13 2008 - 05:40:17 CDT)
- User defined charges with PMEpot Nicolas Sapay (Thu Jun 12 2008 - 18:24:57 CDT)
- Re: vmd-l digest V1 #1086 Ibrahim Moustafa (Wed Jun 11 2008 - 11:27:48 CDT)
- import QM single point calculation Tim Werner (Wed Jun 11 2008 - 04:27:02 CDT)
- problem loading trajectory in VMD under windows XP Aaron.Oakley_at_csiro.au (Tue Jun 10 2008 - 18:41:24 CDT)
- Spring quality watches offer Estela Gibbs (Tue Jun 10 2008 - 18:50:16 CDT)
- Image rendering using pov-ray Dong Xu (Mon Jun 09 2008 - 20:35:55 CDT)
- psf generation of circular proteins Rabab Toubar (Sun Jun 08 2008 - 09:36:00 CDT)
- Dipole moment? Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 07:21:55 CDT)
- Total list of Tcl features Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 00:15:05 CDT)
- Watches for him, her and you Penny Boyle (Fri Jun 06 2008 - 19:47:03 CDT)
- Solvation Katherine Parra (Fri Jun 06 2008 - 08:56:31 CDT)
- Solvation of a molecule Katherine Parra (Thu Jun 05 2008 - 08:15:41 CDT)
- speed of movie gurpreet singh (Thu Jun 05 2008 - 05:40:55 CDT)
- Long file paths in Mac OS 10.5.3 Kevin DeMarco (Wed Jun 04 2008 - 15:24:51 CDT)
- psf file Katherine Parra (Tue Jun 03 2008 - 11:47:43 CDT)
- Batch mode on Mac OS 10.5.3 Benjamin Hall (Tue Jun 03 2008 - 05:16:52 CDT)
- Create atom selection from list of integers Claw Isthelaw (Mon Jun 02 2008 - 11:01:49 CDT)
- Postdoc position available... John Stone (Sat May 31 2008 - 01:06:59 CDT)
- measure hbonds problem politr_at_huji.ac.il (Fri May 30 2008 - 10:59:28 CDT)
- hydrogen bonds politr_at_huji.ac.il (Fri May 30 2008 - 06:05:12 CDT)
- silly rmsd script doesn' t work ... andrea spitaleri (Fri May 30 2008 - 07:17:16 CDT)
- preriodic box problem Matthieu Chavent (Fri May 30 2008 - 04:12:31 CDT)
- Exceeded maximum number of bonds Demian Riccardi (Thu May 29 2008 - 13:18:09 CDT)
- vmd_init Paul Schlesinger (Wed May 28 2008 - 18:25:38 CDT)
- Re: [lammps-users] MDAnalysis (slightly OT) Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
- errors with using surf and MSMS representations Yinglong Miao (Tue May 27 2008 - 14:53:54 CDT)
- IMD per TCL Stephan Frickenhaus (Tue May 27 2008 - 02:06:34 CDT)
- Label on Movie Wei Huang (Mon May 26 2008 - 10:26:30 CDT)
- mass weighted rms fit Dong Xu (Sun May 25 2008 - 11:14:47 CDT)
- How to discard certain atoms politr_at_huji.ac.il (Sun May 25 2008 - 05:50:43 CDT)
- Measure gofr with large DCD files (Possibly use bigdcd ???) Christopher Gillespie (Fri May 23 2008 - 18:43:22 CDT)
- Movies using Cygwin's ImageMagick? Gustavo Seabra (Thu May 22 2008 - 09:18:45 CDT)
- Crystal water INPE (Ingrid Viveka Pettersson) (Thu May 22 2008 - 04:32:59 CDT)
- scale trajectory coords Peter Jones (Wed May 21 2008 - 22:28:35 CDT)
- (no subject) paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
- Several molecules paquotau_at_loria.fr (Tue May 20 2008 - 10:17:18 CDT)
- Using NAMD Energy Plugin S.K. Ghosh (Tue May 20 2008 - 07:18:35 CDT)
- plot residues without hydrogen atoms ABEL Stephane 175950 (Tue May 20 2008 - 07:02:41 CDT)
- Re: [vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle] Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
- Color of bond betwen atoms with different colors Alberto Torres (Fri May 16 2008 - 15:35:40 CDT)
- Slow tcl/tk script for trajectory analysis Alberto Sergio Garay (Fri May 16 2008 - 14:34:40 CDT)
- Draw in a new layer problems Nuno Sousa Cerqueira (Fri May 16 2008 - 08:36:58 CDT)
- How to calculate the volume of a molecule using vmd? Khaled Barakat (Thu May 15 2008 - 22:17:36 CDT)
- Truncated Octahedron for VMD and NAMD simulation Yinglong Miao (Thu May 15 2008 - 14:31:48 CDT)
- Info regarding residue based CG simulation anshudx_at_indiatimes.com (Thu May 15 2008 - 13:04:11 CDT)
- Re: namd-l: Energy plot script Subramanian Vaitheeswaran (Thu May 15 2008 - 07:28:20 CDT)
- Energy plot script Alexandre A. Vakhrouchev (Wed May 14 2008 - 22:11:19 CDT)
- Individual atoms trajectory Alexandre A. Vakhrouchev (Wed May 14 2008 - 00:34:38 CDT)
- membrane builder ffavela_at_fis.cinvestav.mx (Tue May 13 2008 - 17:30:57 CDT)
- Bond lengths from PDB and PSF Andrew Huang (Mon May 12 2008 - 16:36:18 CDT)
- coloring according to charge of residues OZGE ENGIN (Mon May 12 2008 - 10:05:33 CDT)
- 'within' command in VMD Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
- Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sat May 10 2008 - 07:36:43 CDT)
- Re: Recompile VMD with larger index types John Stone (Sat May 10 2008 - 10:24:43 CDT)
- Re: Recompile VMD with larger index types Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
- NewCartoons / STRIDE problem Samuel Coulbourn Flores 花山 (Sat May 10 2008 - 18:16:21 CDT)
- Re: NewCartoons / STRIDE problem John Stone (Fri May 16 2008 - 14:55:56 CDT)
- Re: NewCartoons / STRIDE problem Samuel Coulbourn Flores 花山 (Fri May 16 2008 - 16:06:17 CDT)
- Re: Recompile VMD with larger index types John Stone (Sun May 11 2008 - 00:48:35 CDT)
- Re: Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sun May 11 2008 - 11:20:47 CDT)
- Re: Recompile VMD with larger index types Axel Kohlmeyer (Sun May 11 2008 - 11:18:17 CDT)
- Re: Recompile VMD with larger index types Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
- Re: Recompile VMD with larger index types John Stone (Sat May 10 2008 - 10:24:43 CDT)
- Charge State Confusion MIke S (Thu May 08 2008 - 22:17:33 CDT)
- about measure dihedral angle cong chen (Thu May 08 2008 - 20:53:08 CDT)
- measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 15:52:47 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 16:59:55 CDT)
- Re: measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 23:08:22 CDT)
- Re: measure sasa gives different results on different platforms Jufang Shan (Thu May 08 2008 - 11:26:38 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Thu May 08 2008 - 11:39:07 CDT)
- Re: measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
- Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 16:59:55 CDT)
- bigdcd v2.0 testers needed... Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
- running vmd as pbs job zhenlong li (Tue May 06 2008 - 14:40:44 CDT)
- Writepdb with Solvation Box Alejandro Ortega (Tue May 06 2008 - 12:50:23 CDT)
- NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled Ghalib Bello (Mon May 05 2008 - 23:02:45 CDT)
- question related to rmsd snoze pa (Mon May 05 2008 - 15:03:07 CDT)
- Vmd too slow on Suse10.x cgji (Mon May 05 2008 - 08:20:47 CDT)
- The discreet replica store Greta Bush (Mon May 05 2008 - 01:28:30 CDT)
- about writepdb cong chen (Mon May 05 2008 - 00:08:53 CDT)
- Get one of these awesome replicas Rolando Carlson (Sun May 04 2008 - 12:10:27 CDT)
- Replica watches make great gifts Edwina Grove (Sun May 04 2008 - 01:24:11 CDT)
- The affordable watch alternative Ariel Mitchell (Fri May 02 2008 - 20:35:12 CDT)
- a common list problem Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
- Get one of these awesome replicas Melanie Mcmahon (Fri May 02 2008 - 01:05:03 CDT)
- Rendering electrostatic surface potentials using Tachyon Jason Winget (Thu May 01 2008 - 15:39:31 CDT)
- One of a kind replicas Richard Stone (Thu May 01 2008 - 11:18:31 CDT)
- Watches made to impress Clinton Sylvester (Thu May 01 2008 - 10:40:03 CDT)
- Measuring fit exclusively in 1 plane Benjamin Hall (Thu May 01 2008 - 04:59:04 CDT)
- Why get an original watch? Leticia Larkin (Wed Apr 30 2008 - 20:14:01 CDT)
- Impressive Glashutte timepieces! Lorena Shipley (Wed Apr 30 2008 - 08:35:35 CDT)
- Spring quality watches offer Bertie Earl (Tue Apr 29 2008 - 19:30:10 CDT)
- creating psf from pgn S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
- Beginner with cyclic peptide Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
- Rolex replica is a ultimate gift Jimmie Corona (Tue Apr 29 2008 - 08:25:38 CDT)
- clarification to "problem using pbc wrap" politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
- problem using pbc wrap politr_at_huji.ac.il (Tue Apr 29 2008 - 05:52:09 CDT)
- (no subject) politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
- Spring quality watches offer Bryce Vang (Mon Apr 28 2008 - 12:56:22 CDT)
- Hot replica watches from 2008 Rudy Puckett (Sun Apr 27 2008 - 14:53:15 CDT)
- Re: namd-l: How to play molecule trajectory with VMD? Regina Politi (Sun Apr 27 2008 - 07:15:22 CDT)
- Replica watch is a perfect gift Christian Courtney (Sun Apr 27 2008 - 04:18:34 CDT)
- Replica watch is a perfect gift Murray Dyer (Sat Apr 26 2008 - 17:18:11 CDT)
- Can not enter text in VMD plugin window Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
- Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 15:12:19 CDT)
- Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 10:19:52 CDT)
- You can save 80% Arturo Fernandez (Fri Apr 25 2008 - 05:58:21 CDT)
- Get one of these awesome replicas Jerry Kiser (Thu Apr 24 2008 - 18:45:18 CDT)
- problem with "within" command of VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 08:22:23 CDT)
- viewing pca output Bala subramanian (Thu Apr 24 2008 - 08:09:43 CDT)
- Inexpensive Louis Vuitton bags Buford Granger (Thu Apr 24 2008 - 09:03:05 CDT)
- resolution screen in Linux andrea spitaleri (Thu Apr 24 2008 - 07:33:24 CDT)
- how to identify DNA-protein interaction interface BERGY (Thu Apr 24 2008 - 05:42:53 CDT)
- problem while running VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 03:31:22 CDT)
- problem while running VMD Regina Politi (Thu Apr 24 2008 - 03:30:19 CDT)
- One of a kind replicas Erin Ziegler (Wed Apr 23 2008 - 21:53:24 CDT)
- Rendering Labels with Tachyon Anthony Ivetac (Wed Apr 23 2008 - 18:18:33 CDT)
- Re: Rendering Labels with Tachyon John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
- Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
- Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 14:45:02 CDT)
- Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 17:43:08 CDT)
- Re: Rendering Labels with Tachyon Leonardo Trabuco (Thu Apr 24 2008 - 18:13:06 CDT)
- Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 17:29:10 CDT)
- Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
- Re: Rendering Labels with Tachyon John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
- Get your watch now Helena Slater (Wed Apr 23 2008 - 12:17:13 CDT)
- measure distance politr_at_huji.ac.il (Wed Apr 23 2008 - 09:02:41 CDT)
- memorry problem politr_at_huji.ac.il (Wed Apr 23 2008 - 06:48:53 CDT)
- bug in the g(r) evaluation? cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
- alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction? maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
- One of a kind replicas Jane Mayberry (Mon Apr 21 2008 - 07:16:11 CDT)
- Tag Heuer replicas better than originals Errol Lusk (Sun Apr 20 2008 - 18:30:56 CDT)
- Tag Heuer replicas better than originals Corine Brady (Sun Apr 20 2008 - 07:33:41 CDT)
- Tag Heuer replicas better than originals Mona Gomes (Sat Apr 19 2008 - 17:17:44 CDT)
- warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 09:09:32 CDT)
- Re: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 09:21:04 CDT)
- Re: warnings during plugin build John Stone (Sat Apr 19 2008 - 14:46:06 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
- RE: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 18:40:41 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sun Apr 20 2008 - 03:51:17 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sun Apr 20 2008 - 12:37:39 CDT)
- RE: warnings during plugin build Axel Kohlmeyer (Sun Apr 20 2008 - 13:33:29 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Mon Apr 21 2008 - 18:35:21 CDT)
- RE: warnings during plugin build Axel Kohlmeyer (Mon Apr 21 2008 - 18:45:50 CDT)
- Re: warnings during plugin build John Stone (Mon Apr 21 2008 - 19:50:11 CDT)
- Re: warnings during plugin build Vlad Cojocaru (Tue Apr 22 2008 - 03:39:43 CDT)
- Re: warnings during plugin build Axel Kohlmeyer (Tue Apr 22 2008 - 05:39:59 CDT)
- RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
- Take a look at the latest replica watches Lillie Lyons (Sat Apr 19 2008 - 07:00:53 CDT)
- Spring quality watches offer Weldon Sylvester (Fri Apr 18 2008 - 18:29:29 CDT)
- RMSD between two structures without the same number of atoms Aurelie.DeLuca_at_sanofi-aventis.com (Fri Apr 18 2008 - 08:08:39 CDT)
- You can save 80% Annabelle Posey (Thu Apr 17 2008 - 17:58:17 CDT)
- PPMTOMPEG Quality Anthony Ivetac (Thu Apr 17 2008 - 14:40:15 CDT)
- Compiled version for MacOSX with non-standard options Delalande (Thu Apr 17 2008 - 08:37:14 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
- Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Fri Apr 18 2008 - 12:55:49 CDT)
- Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 14:21:30 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Wed Apr 23 2008 - 23:45:05 CDT)
- Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
- Re: Compiled version for MacOSX with non-standard options John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
- Replica watch is a perfect gift Deanna Fleming (Thu Apr 17 2008 - 05:25:56 CDT)
- measure hbonds between protein and water - problem with periodic boundary conditions Ana Vila Verde (Thu Apr 17 2008 - 02:54:08 CDT)
- atomselect cong chen (Wed Apr 16 2008 - 19:58:18 CDT)
- Trajectory title Alessandro Cembran (Wed Apr 16 2008 - 07:53:47 CDT)
- You and a Rolex watch Tisha Engle (Wed Apr 16 2008 - 05:16:24 CDT)
- Timer in VMD Lili Peng (Tue Apr 15 2008 - 16:59:28 CDT)
- You and a Rolex watch Althea Lake (Tue Apr 15 2008 - 17:12:00 CDT)
- Example tutorial snoze pa (Mon Apr 14 2008 - 18:38:03 CDT)
- catDCD Raul Araya (Mon Apr 14 2008 - 12:01:41 CDT)
- Spring quality watches offer Grace Clay (Mon Apr 14 2008 - 11:47:27 CDT)
- topology files L/D form Jorgen Simonsen (Mon Apr 14 2008 - 04:50:08 CDT)
- 15% off on two watches Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
- compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 12:24:52 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 15:00:12 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository John Stone (Sun Apr 13 2008 - 15:29:57 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 03:26:35 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 05:16:25 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Mon Apr 14 2008 - 05:16:19 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 05:43:00 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository John Stone (Mon Apr 14 2008 - 10:26:18 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
- Inexpensive Louis Vuitton bags Royce Rosa (Sat Apr 12 2008 - 18:57:58 CDT)
- change residue name and write a trajectory file L. Michel Espinoza-Fonseca (Thu Apr 10 2008 - 17:02:13 CDT)
- Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 15:15:36 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Thu Apr 10 2008 - 17:05:18 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 21:17:08 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Sun Apr 13 2008 - 11:47:03 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Ben Chern (Sun Apr 13 2008 - 20:49:26 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Mon Apr 14 2008 - 10:24:53 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 21:17:08 CDT)
- Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Thu Apr 10 2008 - 17:05:18 CDT)
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- Visualization in 3-D using NVIDIA quaddro Himanshu Khandelia (Wed Apr 09 2008 - 05:27:18 CDT)
- Play at the world's leading online casino..... Ned Roy (Wed Apr 09 2008 - 01:14:11 CDT)
- Displaying nearest images using PBCTools Subramanian Vaitheeswaran (Tue Apr 08 2008 - 15:49:03 CDT)
- some questions about the RDF plugin Raul Araya (Mon Apr 07 2008 - 15:23:32 CDT)
- How to circumvent: FATAL ERROR: Periodic cell has become too small for original patch grid! Maxim Paliy (Mon Apr 07 2008 - 12:36:24 CDT)
- psfgen 999 waters resname X column Low Soo Mei (Mon Apr 07 2008 - 05:31:52 CDT)
- Insall Problem VMD Linux 1.8.6 Part II! Peter Hains (Sun Apr 06 2008 - 23:07:55 CDT)
- Install problem VMD Linux 1.8.6 Peter Hains (Sun Apr 06 2008 - 19:19:15 CDT)
- About Tcl command zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
- How to read specific DCD frames directly in Fortran? Yinglong Miao (Sat Apr 05 2008 - 13:21:53 CDT)
- Re: How to read specific DCD frames directly in Fortran? Peter Freddolino (Sat Apr 05 2008 - 13:38:39 CDT)
- Re: How to read specific DCD frames directly in Fortran? John Stone (Sat Apr 05 2008 - 13:43:21 CDT)
- Re: How to read specific DCD frames directly in Fortran? Axel Kohlmeyer (Sat Apr 05 2008 - 18:08:23 CDT)
- how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 16:27:04 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 16:36:05 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 17:42:08 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 17:59:52 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 25 2008 - 14:18:24 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 25 2008 - 16:07:06 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 25 2008 - 17:09:34 CDT)
- Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 17:42:08 CDT)
- Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 16:36:05 CDT)
- Topology file Alejandro Ortega (Fri Apr 04 2008 - 11:24:14 CDT)
- 0ne of a kind repl1cas Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
- You can s4ve 80% Sherman Sherman (Wed Apr 02 2008 - 10:10:22 CDT)
- Cannot perform RMSD analysis Maria Sanchez Farran (Wed Apr 02 2008 - 07:49:55 CDT)
- April promo on w4tches Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
- render Dongsheng Zhang (Mon Mar 31 2008 - 15:51:35 CDT)
- using cvs under Windows XP Ben Chern (Mon Mar 31 2008 - 08:31:31 CDT)
- Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 04:13:38 CDT)
- Re: Compiling VMD under Windows XP John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
- Re: Compiling VMD under Windows XP Axel Kohlmeyer (Mon Mar 31 2008 - 21:47:02 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Tue Apr 01 2008 - 01:33:34 CDT)
- Re: Compiling VMD under Windows XP Axel Kohlmeyer (Tue Apr 01 2008 - 06:06:22 CDT)
- Movie Maker skipping Samuel Coulbourn Flores (Tue Apr 01 2008 - 12:38:47 CDT)
- Re: Movie Maker skipping John Stone (Tue Apr 01 2008 - 12:53:13 CDT)
- Re: Movie Maker skipping Samuel Coulbourn Flores (Tue Apr 01 2008 - 13:25:08 CDT)
- Re: Movie Maker skipping John Stone (Tue Apr 01 2008 - 13:37:18 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Tue Apr 01 2008 - 20:26:36 CDT)
- Re: Compiling VMD under Windows XP John Stone (Thu Apr 03 2008 - 00:13:12 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Thu Apr 03 2008 - 07:14:22 CDT)
- Re: Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
- Re: Compiling VMD under Windows XP John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
- porcupine plot SWAPNA (Mon Mar 31 2008 - 01:06:36 CDT)
- NAMDenergy: how to override a FATAL ERROR Neelanjana Sengupta (Sun Mar 30 2008 - 14:50:29 CDT)
- Problems with PDB file format in VMD cong chen (Thu Mar 27 2008 - 18:55:38 CDT)
- Tcl 8.5.x in upcoming versions of VMD... John Stone (Thu Mar 27 2008 - 17:19:47 CDT)
- Test VMD with CUDA support for Linux and MacOS X 10.5.2... John Stone (Thu Mar 27 2008 - 17:13:15 CDT)
- Selection "within x of something" is not updated throughout DCD trajectory? Maxim Paliy (Thu Mar 27 2008 - 13:59:25 CDT)
- How to see the original Origin (0,0,0, coordinate) of a system Utpal Sarkar (Thu Mar 27 2008 - 11:20:03 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system Axel Kohlmeyer (Thu Mar 27 2008 - 11:57:58 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system Adrian Kaats (Thu Mar 27 2008 - 15:56:52 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system John Stone (Thu Mar 27 2008 - 16:51:44 CDT)
- Can VMD show the interactions between different structure part? Ben Chern (Wed Mar 26 2008 - 22:20:57 CDT)
- problem with pbc Matt Watkins (Wed Mar 26 2008 - 16:20:55 CDT)
- Can we get secondary structure from PDB files? Ben Chern (Wed Mar 26 2008 - 04:02:04 CDT)
- time correlation function Krishnan, Marimuthu (Tue Mar 25 2008 - 22:44:40 CDT)
- Test cong chen (Tue Mar 25 2008 - 18:39:50 CDT)
- VMD tutorial for working with solid crystals Minhaj (Tue Mar 25 2008 - 03:33:19 CDT)
- script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 17:16:39 CDT)
- Re: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 19:22:30 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 20:07:20 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 19:53:36 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 20:19:06 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 20:07:35 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Tue Mar 25 2008 - 00:11:29 CDT)
- RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
- Re: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
- Loading a PDB file with different atom counts in models Adrian Kaats (Fri Mar 21 2008 - 09:19:35 CDT)
- atoms with changing colors Simone Melchionna (Thu Mar 20 2008 - 16:50:50 CDT)
- atomselect protein Adrian Kaats (Thu Mar 20 2008 - 16:39:54 CDT)
- old VMD post - RE: measuring distances in vmd tkon Simpson, Lisa M (Thu Mar 20 2008 - 12:38:36 CDT)
- GPU test machine Michael Di Domenico (Thu Mar 20 2008 - 11:04:59 CDT)
- running ca-dist.tcl Simpson, Lisa M (Thu Mar 20 2008 - 08:57:47 CDT)
- RMSD calc SENTHIL KUMAR (Thu Mar 20 2008 - 01:11:02 CDT)
- Build a VMD forum? Stanley, Yemin Shi (Wed Mar 19 2008 - 15:49:08 CDT)
- Re: Build a VMD forum? Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
- Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide Axel Kohlmeyer (Wed Mar 19 2008 - 21:07:06 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 21:37:45 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide Axel Kohlmeyer (Wed Mar 19 2008 - 21:52:58 CDT)
- Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
- Re: Build a VMD forum? Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
- Radial Density Jennifer Williams (Wed Mar 19 2008 - 11:12:56 CDT)
- dipole Alessio Alexiadis (Wed Mar 19 2008 - 06:54:21 CDT)
- Display bond breaking Stanley, Yemin Shi (Tue Mar 18 2008 - 22:17:50 CDT)
- DLPOLY HISTORY FILE in VMD Utpal Sarkar (Tue Mar 18 2008 - 11:08:29 CDT)
- Re-create Figures in VMD Images and Movies Tutorial Dong Xu (Mon Mar 17 2008 - 16:17:57 CDT)
- closewater.tcl Irene Newhouse (Mon Mar 17 2008 - 14:48:37 CDT)
- GLSL lost Ignacio Fernndez Galvn (Mon Mar 17 2008 - 12:17:21 CDT)
- different numbers of frames even though... Christopher Stiles (Fri Mar 14 2008 - 01:49:53 CDT)
- ramaplot ramya narasimhan (Fri Mar 14 2008 - 00:46:30 CDT)
- Does VMD support to draw a velocity field diagram? Fred (Rui FENG) (Thu Mar 13 2008 - 16:26:13 CDT)
- Diffusion Constant joy tehrani (Wed Mar 12 2008 - 17:44:52 CDT)
- Re: about paratool saam (Tue Mar 11 2008 - 11:56:45 CDT)
- Paratools problem with Gaussian Output Nicolas Floquet (Tue Mar 11 2008 - 02:39:05 CDT)
- Using namdenergy without cutoffs? poker_at_physics.usyd.edu.au (Tue Mar 11 2008 - 01:09:20 CDT)
- problem with gopython Carolyn Phillips (Mon Mar 10 2008 - 22:32:05 CDT)
- snapshot not compatible with -dispdev text? Emmanuel Levy (Mon Mar 10 2008 - 17:08:02 CDT)
- Solvent accessible surface area calculation L. Michel Espinoza-Fonseca (Mon Mar 10 2008 - 14:41:08 CDT)
- Automatically zoom so that the protein fill the display Emmanuel Levy (Mon Mar 10 2008 - 13:21:46 CDT)
- Re: Automatically zoom so that the protein fill the display Axel Kohlmeyer (Mon Mar 10 2008 - 13:50:50 CDT)
- pbc join Dongsheng Zhang (Sun Mar 09 2008 - 22:44:32 CDT)
- radial density over one frame Christopher Stiles (Sun Mar 09 2008 - 14:55:51 CDT)
- compile problem for VMD1.8.6: OpenGLRenderer.C Dan Strahs (Sat Mar 08 2008 - 20:17:23 CST)
- calculate volume Dong Xu (Fri Mar 07 2008 - 21:20:40 CST)
- DCD file Alejandro Ortega (Fri Mar 07 2008 - 12:07:23 CST)
- how to make smooth movies ? maria goranovic (Fri Mar 07 2008 - 07:13:53 CST)
- Using RMSDTT in a script and aligning volume data Ignacio Fernndez Galvn (Fri Mar 07 2008 - 03:35:55 CST)
- H2 bond distances calculation n displaying image SENTHIL KUMAR (Thu Mar 06 2008 - 22:07:18 CST)
- RMSD trajectory Tool joy tehrani (Thu Mar 06 2008 - 06:45:35 CST)
- VMD 3D stereo hardware Alba Colet Subirachs (Thu Mar 06 2008 - 03:16:25 CST)
- complete residues within Leandro Martnez (Thu Mar 06 2008 - 02:20:59 CST)
- TCL/VMD problem Corenflos, Steven Charles (Wed Mar 05 2008 - 11:59:20 CST)
- radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 11:45:31 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
- Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 16:34:14 CST)
- Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 21:26:22 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 21:54:46 CST)
- Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
- Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
- running vmd in parallel Michael Kreim (Wed Mar 05 2008 - 11:13:10 CST)
- What's the main reason of the structure or function of a protein? Fei Chen (Wed Mar 05 2008 - 07:53:18 CST)
- about paratool laura (Wed Mar 05 2008 - 02:33:41 CST)
- Visualizing trajectory with changing atoms Suman Chakrabarty (Tue Mar 04 2008 - 15:19:58 CST)
- VMD languaje information Alba Colet Subirachs (Tue Mar 04 2008 - 10:24:09 CST)
- [carlos.simmerling@gmail.com: ACS awards] John Stone (Mon Mar 03 2008 - 20:11:56 CST)
- VS: average area per lipid Bo Hjen Justensen (Mon Mar 03 2008 - 15:10:09 CST)
- average area per lipid Stephen Dutz (Mon Mar 03 2008 - 11:14:11 CST)
- missing basic tutorials for VMD scripting? massimo camarda (Sat Mar 01 2008 - 03:02:49 CST)
- unusual bond between the cysteine and arginine residue during the simulation OZGE ENGIN (Fri Feb 29 2008 - 13:30:01 CST)
- no convergence in align Jorgen Simonsen (Fri Feb 29 2008 - 07:03:18 CST)
- Re: Cluster plugin and Gromacs g_cluster OZGE ENGIN (Wed Feb 27 2008 - 07:21:15 CST)
- periodic images for trajectory Jennifer Williams (Wed Feb 27 2008 - 04:18:56 CST)
- Compute force between two atoms Chen Fei (Tue Feb 26 2008 - 20:28:22 CST)
- more on lammps and VMD coordinates Arienti, Marco UTRC (Tue Feb 26 2008 - 11:18:37 CST)
- control drawing method Myunggi Yi (Mon Feb 25 2008 - 13:26:33 CST)
- How to get rubber-like surface with Tachyon renderer Alexander Metz (Mon Feb 25 2008 - 09:37:02 CST)
- specify the bonds between the atoms massimo camarda (Mon Feb 25 2008 - 01:48:52 CST)
- measure binding site SASA Dong Xu (Sun Feb 24 2008 - 12:38:49 CST)
- Changing a structure of macromolecule with VMD fouchni_at_uni-osnabrueck.de (Sun Feb 24 2008 - 08:38:44 CST)
- visualizing disulphide bonds OZGE ENGIN (Sun Feb 24 2008 - 04:31:18 CST)
- Ramachandran plot tcl script Anthony Samiotakis (Sat Feb 23 2008 - 15:54:50 CST)
- vmd snapshots without display Thomas C. Bishop (Fri Feb 22 2008 - 10:59:50 CST)
- Residue replacement question] fouchni_at_uni-osnabrueck.de (Fri Feb 22 2008 - 04:20:04 CST)
- movie generation without runtime frame show massimo camarda (Fri Feb 22 2008 - 04:15:58 CST)
- monitor helicity change Jufang Shan (Thu Feb 21 2008 - 19:06:14 CST)
- defining bonds Thomas C. Bishop (Thu Feb 21 2008 - 14:47:15 CST)
- VASP CHGCAR Wesley Smith (Thu Feb 21 2008 - 14:12:05 CST)
- couldn't fork child process: not enough memory jrui_at_ci.uc.pt (Thu Feb 21 2008 - 13:47:06 CST)
- couldn't open "c:/multiseq-406080740227.start.domain": invalid argument Maurice O'Connell (Thu Feb 21 2008 - 12:30:26 CST)
- gromacs trajectory files maria goranovic (Thu Feb 21 2008 - 04:18:17 CST)
- Selection in VMD Graphical representation Pavan Ghatty (Wed Feb 20 2008 - 10:22:03 CST)
- Residue replacement question fouchni_at_uni-osnabrueck.de (Wed Feb 20 2008 - 04:15:33 CST)
- spacial distribution function L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:52:15 CST)
- how to set molinfo from python Jorgen Simonsen (Tue Feb 19 2008 - 02:03:16 CST)
- tcl script memory problem - NOT in atomselect Johannes Mllegger (Mon Feb 18 2008 - 21:45:42 CST)
- change axes name massimo camarda (Mon Feb 18 2008 - 11:57:35 CST)
- VMD limitation for loading large trajectory file Dong Xu (Fri Feb 15 2008 - 16:48:45 CST)
- Unable to see VDW , CPK representations Arnab Chakrabarty (Fri Feb 15 2008 - 16:25:23 CST)
- display of periodic DCD information Thomas C. Bishop (Thu Feb 14 2008 - 14:15:15 CST)
- Volume data formats Ignacio Fernndez Galvn (Thu Feb 14 2008 - 11:58:40 CST)
- rmsd different from rmsd implemented in VMD Jorgen Simonsen (Wed Feb 13 2008 - 10:18:19 CST)
- PSFGEN::: ERROR: failed on end of segment Dibyadeep Paul (Wed Feb 13 2008 - 03:38:14 CST)
- Improved VMD performance on MacOSX 10.5.2 Christoph Weber (Tue Feb 12 2008 - 16:51:14 CST)
- FieldLines Mary Karpen (Tue Feb 12 2008 - 07:34:42 CST)
- variables from VMD to psfgen Thomas C. Bishop (Mon Feb 11 2008 - 17:28:12 CST)
- measure SASA L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 17:48:12 CST)
- namd energy plugin L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 15:44:04 CST)
- the script do not update the frame number for secondary structure analysis OZGE ENGIN (Sun Feb 10 2008 - 05:18:46 CST)
- Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 03:10:25 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis OZGE ENGIN (Mon Feb 11 2008 - 04:01:15 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 04:55:39 CST)
- Hinge calculation in MD trajectory using Hingefind plug-in Jorge Hernandez Fernandez (Mon Feb 11 2008 - 13:02:59 CST)
- Re: Hinge calculation in MD trajectory using Hingefind plug-in John Stone (Fri Feb 15 2008 - 15:40:29 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis OZGE ENGIN (Mon Feb 11 2008 - 04:01:15 CST)
- Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 03:10:25 CST)
- the script do not update the frame for secondary structure analysis OZGE ENGIN (Sun Feb 10 2008 - 04:13:03 CST)
- ssrecalc output for the whole trajectory OZGE ENGIN (Sat Feb 09 2008 - 08:28:02 CST)
- output of the ssrecalc command OZGE ENGIN (Fri Feb 08 2008 - 14:01:45 CST)
- installation problem vmd 1.8.6 on fedora 3 kinshuk_at_chem.iitb.ac.in (Fri Feb 08 2008 - 00:15:50 CST)
- heuristic bond computation Tony Sheh (Thu Feb 07 2008 - 21:58:15 CST)
- SASA calculation (protein + small molecules) Manali Mehendale (Thu Feb 07 2008 - 14:45:37 CST)
- merge pdb Lucie Huynh (Wed Feb 06 2008 - 10:29:58 CST)
- vmd maxAtom C L Freeman (Wed Feb 06 2008 - 10:10:30 CST)
- help with animate read command Jim Pfaendtner (Tue Feb 05 2008 - 11:26:47 CST)
- namd help? Corenflos, Steven Charles (Tue Feb 05 2008 - 12:15:47 CST)
- About Cluster Plug-in OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
- Displaying Counter Alongside Animation Adrian Koh (Tue Feb 05 2008 - 00:20:36 CST)
- VMD, NAMDenergy & AMBER parameters Irene Newhouse (Mon Feb 04 2008 - 17:23:37 CST)
- To create Tetramer Swarna Patra (Mon Feb 04 2008 - 16:42:52 CST)
- Question about geometrical figures Felix Rodrigues Gulias (Fri Feb 01 2008 - 11:03:42 CST)
- question about 'measure bond' MW Van der Kamp, School of Chemistry (Fri Feb 01 2008 - 09:21:20 CST)
- Rdf from a specific point Robert Coridan (Fri Feb 01 2008 - 06:12:42 CST)
- animation of an atom diffusion inside a bulk crystal massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
- sausage view of NMR ensembles dimka (Thu Jan 31 2008 - 23:10:59 CST)
- Percentage Helicity calculation in VMD aneesh cna (Thu Jan 31 2008 - 22:54:53 CST)
- problems with MDenergy Irene Newhouse (Wed Jan 30 2008 - 15:06:49 CST)
- Mutate nucleotides Maurizio Olla (Tue Jan 29 2008 - 23:51:05 CST)
- Sasa script in python returns "Runtime error" Per Jr. Greisen (Tue Jan 29 2008 - 09:53:59 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
- Re: Sasa script in python returns "Runtime error" Per Jr. Greisen (Wed Jan 30 2008 - 10:13:38 CST)
- Re: Sasa script in python returns "Runtime error" John Stone (Wed Jan 30 2008 - 10:26:18 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 10:28:57 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 10:24:55 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
- Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
- (no subject) mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
- 'gopython' Tkinter and Numeric Python error brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
- (no subject) Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
- where is the "move" procedure in the toturial Justin JEONG (Sun Jan 27 2008 - 16:32:03 CST)
- VMD 1.8.6, XTC format on Mac OS X 10.5.1 Tony Sheh (Sat Jan 26 2008 - 11:56:01 CST)
- re: script hangs when use full dcd file Irene Newhouse (Fri Jan 25 2008 - 14:14:53 CST)
- problem with timeline plugin aneesh cna (Fri Jan 25 2008 - 00:12:17 CST)
- MSVC Projects Corrupt and Missing Wesley Smith (Thu Jan 24 2008 - 22:18:09 CST)
- Can VMD visualize forces? Yinglong Miao (Thu Jan 24 2008 - 17:16:14 CST)
- problems with a script Irene Newhouse (Thu Jan 24 2008 - 16:39:40 CST)
- preserving atom index or hexadecimal residue numbers after writepdb Vlad Cojocaru (Thu Jan 24 2008 - 04:44:40 CST)
- minimization command Sourmaidou, Damiani (Wed Jan 23 2008 - 12:35:49 CST)
- proximity of residues Francesco Pietra (Wed Jan 23 2008 - 01:40:51 CST)
- delatom "no segment..." Lucie Huynh (Tue Jan 22 2008 - 05:10:00 CST)
- Inconsistencies in NAMD simulations Chandra Ramananjara (Tue Jan 22 2008 - 02:49:53 CST)
- local urea concentration L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 11:17:14 CST)
- SSE from the protein sequence Lu Lin (Mon Jan 21 2008 - 09:11:49 CST)
- problem with sidechian representation gurpreet singh (Mon Jan 21 2008 - 00:02:37 CST)
- VMD drawing Wesley Smith (Sun Jan 20 2008 - 15:51:06 CST)
- Error in changing on screen options of VMD Monika Sharma (Fri Jan 18 2008 - 07:45:07 CST)
- problem with time line plugin in VMD ABEL Stephane 175950 (Fri Jan 18 2008 - 03:36:30 CST)
- error in loading psf file generated from lammps data file. Dongsheng Zhang (Thu Jan 17 2008 - 16:23:27 CST)
- MSMS plugin for windows Lu Lin (Thu Jan 17 2008 - 08:35:55 CST)
- Could not locate 'dowser' (Program not found message box) Stanley, Yemin Shi (Thu Jan 17 2008 - 07:31:22 CST)
- C NH1 C minimization error Sourmaidou, Damiani (Thu Jan 17 2008 - 06:43:18 CST)
- RMSD with protein ligand Francesco Pietra (Thu Jan 17 2008 - 00:49:37 CST)
- visualizing a simple polymer chain via VMD Sergey Mkrtchyan (Wed Jan 16 2008 - 11:48:16 CST)
- Re: visualizing a simple polymer chain via VMD Axel Kohlmeyer (Wed Jan 16 2008 - 12:26:08 CST)
- Re: visualizing a simple polymer chain via VMD Olaf Lenz (Thu Jan 17 2008 - 01:24:34 CST)
- replace molecule? Lucie Huynh (Wed Jan 16 2008 - 03:09:39 CST)
- problem rendering NewCartoon with tachyon MW Van der Kamp, School of Chemistry (Tue Jan 15 2008 - 03:03:27 CST)
- How to calculate end-to-end distance in VMD? Lili Peng (Mon Jan 14 2008 - 16:37:33 CST)
- how to load a molecule in pdb format and save in mol2 format in batch mode Sridhar Acharya (Mon Jan 14 2008 - 01:32:33 CST)
- Video Card for VMD, 2D or 3D Stanley, Yemin Shi (Fri Jan 11 2008 - 18:30:59 CST)
- Export VMD graphics to POV-Ray Igor Schapiro (Fri Jan 11 2008 - 08:22:13 CST)
- measure contacts script L. Michel Espinoza-Fonseca (Fri Jan 11 2008 - 05:57:10 CST)
- POV-Ray 3.6; VMD Movie Maker; Continuous Render (UNCLASSIFIED) Paul, Kristian (Cont, ARL/WMRD) (Thu Jan 10 2008 - 12:16:16 CST)
- PBC Nazanin Samadi (Thu Jan 10 2008 - 07:19:20 CST)
- problem with superimposing two proteins aneesh cna (Thu Jan 10 2008 - 05:33:21 CST)
- Is there any way to diagonalize a 3x3 matrix in VMD,.......... Sergio (Wed Jan 09 2008 - 13:18:05 CST)
- Re: Link atoms snoze pa (Wed Jan 09 2008 - 10:23:31 CST)
- connectivity problem rams rams (Wed Jan 09 2008 - 08:57:48 CST)
- Link atoms snoze pa (Tue Jan 08 2008 - 18:10:11 CST)
- NAMDEnergy problem Lixia Jin Day (Tue Jan 08 2008 - 14:30:29 CST)
- How to choose part of the volume data for isosurface visualization? Yinglong Miao (Tue Jan 08 2008 - 10:41:02 CST)
- VMD intallation Satyan Sharma (Mon Jan 07 2008 - 12:52:39 CST)
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 Brian Bennion (Mon Jan 07 2008 - 10:58:36 CST)
- X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 Guanglei Cui (Mon Jan 07 2008 - 08:35:14 CST)
- Phantom Omni Haptic Device Martin Held (Sun Jan 06 2008 - 15:00:47 CST)
- Cluster analysis Francesco Pietra (Sun Jan 06 2008 - 04:27:19 CST)
- Re: Cluster analysis John Stone (Mon Jan 07 2008 - 01:59:40 CST)
- Re: Cluster analysis Francesco Pietra (Mon Jan 07 2008 - 04:35:30 CST)
- Re: Cluster analysis John Stone (Mon Jan 07 2008 - 11:51:34 CST)
- Re: Cluster analysis Francesco Pietra (Mon Jan 07 2008 - 15:44:15 CST)
- Re: Cluster analysis Luis Gracia (Mon Jan 07 2008 - 11:22:03 CST)
- Re: Cluster analysis Francesco Pietra (Mon Jan 07 2008 - 12:08:27 CST)
- Re: Re: Cluster analysis OZGE ENGIN (Tue Feb 05 2008 - 06:29:17 CST)
- Re: Cluster analysis Francesco Pietra (Mon Jan 07 2008 - 04:35:30 CST)
- Re: Cluster analysis John Stone (Mon Jan 07 2008 - 01:59:40 CST)
- VMD-L membership pruning, more anti-spam measures.. John Stone (Sat Jan 05 2008 - 00:26:40 CST)
- vmd error message snoze pa (Fri Jan 04 2008 - 12:59:00 CST)
- VMD-L post spam blocking, rescued messages from the last 30 days... John Stone (Fri Jan 04 2008 - 12:33:38 CST)
- VMD movie from XYZ coordinate if file has two type of atoms Anil Kumar (Sun Dec 09 2007 - 22:12:58 CST)
- resolving side chain clashes jayant_jacques (Thu Dec 13 2007 - 14:05:10 CST)
- namd-l: Creating topology for carbon nanotube / any new structure prateeksha s (Tue Dec 18 2007 - 23:10:42 CST)
- VMD on Linux Suse SCIPIONI Roberto (Wed Dec 19 2007 - 01:21:21 CST)
- replication of bilayer Chanda.Jnanojjal_at_edam.uhp-nancy.fr (Wed Dec 26 2007 - 04:08:00 CST)
- installation on suse linux 10.3 s lal badshah (Wed Dec 26 2007 - 23:28:27 CST)
- Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 14:08:31 CST)
- Re: Hydrogens in vmd Peter Freddolino (Thu Jan 03 2008 - 14:25:05 CST)
- Re: Hydrogens in vmd John Stone (Thu Jan 03 2008 - 14:26:16 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 15:30:40 CST)
- Re: Hydrogens in vmd Peter Freddolino (Thu Jan 03 2008 - 15:38:31 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 15:53:31 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 16:15:55 CST)
- Re: Hydrogens in vmd Peter Freddolino (Thu Jan 03 2008 - 16:21:53 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 16:19:05 CST)
- Re: Hydrogens in vmd snoze pa (Thu Jan 03 2008 - 15:30:40 CST)
- Question about Gromacs box size in VMD..... Sergio Garay (Thu Jan 03 2008 - 07:27:37 CST)
- freevr tool transformation Ahmed Nawar (Thu Jan 03 2008 - 00:28:31 CST)
- select atoms between molecules Sampo Karkola (Wed Jan 02 2008 - 06:13:39 CST)
- Selecting water molecules within 5 ang in a trajectory( generated by amber). naga raju (Wed Dec 26 2007 - 01:01:50 CST)
- saltbr plugging problem: too many open files Amaury Pupo Merio (Fri Dec 21 2007 - 09:31:07 CST)
- Viewing molden grid files Ignacio Fernndez Galvn (Fri Dec 21 2007 - 03:14:46 CST)
- parameter tool tutorial snoze pa (Thu Dec 20 2007 - 17:15:15 CST)
- vmd QMtool snoze pa (Thu Dec 20 2007 - 16:53:34 CST)
- measure hbonds Narender Singh Maan (Mon Dec 17 2007 - 14:52:39 CST)
- Increasing MAXATOMBONDS? Oliver Beckstein (Mon Dec 17 2007 - 13:37:42 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Tue Dec 18 2007 - 12:56:55 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Tue Dec 18 2007 - 16:05:02 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Wed Dec 19 2007 - 20:59:02 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Thu Dec 20 2007 - 15:50:10 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Wed Jan 09 2008 - 01:22:13 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Mon Jan 21 2008 - 10:42:05 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Mon Jan 21 2008 - 12:11:51 CST)
- Re: Increasing MAXATOMBONDS? Oliver Beckstein (Tue Dec 18 2007 - 16:05:02 CST)
- Re: Increasing MAXATOMBONDS? John Stone (Tue Dec 18 2007 - 12:56:55 CST)
- OpenSuSE 10.3: ppmtompeg and MovieMaker plugin Dow Hurst DPHURST (Fri Dec 14 2007 - 12:14:46 CST)
- display bonds Dongsheng Zhang (Fri Dec 14 2007 - 08:52:24 CST)
- add Mg2+ Lixia Jin Day (Thu Dec 13 2007 - 11:19:06 CST)
- calculation of alpha helical content L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 10:29:24 CST)
- VMD movie from XYZ coordinate if file has two type of atoms] Anil Kumar (Tue Dec 11 2007 - 04:20:07 CST)
- VMD movie from XYZ coordinate if file has two type of atoms Anil Kumar (Mon Dec 10 2007 - 22:43:49 CST)
- Re: helical construction Harish Lnu (Mon Dec 10 2007 - 13:16:39 CST)
- helical construction Harish Lnu (Mon Dec 10 2007 - 10:58:16 CST)
- delatom usage - no such segment? Stephen M. Dutz (Sun Dec 09 2007 - 19:05:37 CST)
- problem with the new cartoon representation mode OZGE ENGIN (Sat Dec 08 2007 - 13:42:12 CST)
- how to transform the coordinate of the atom using vmd Shulin Zhuang (Fri Dec 07 2007 - 14:01:51 CST)
- Finding the length of multiple small molecules Manali Mehendale (Fri Dec 07 2007 - 13:15:59 CST)
- drawing trajectory of a molecule L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 08:30:04 CST)
- Making movies in VMD Lili Peng (Wed Dec 05 2007 - 18:32:44 CST)
- Rainbow color scheme for VolumeSlice / Volume Xavier Cartoixa Soler (Tue Dec 04 2007 - 05:41:36 CST)
- Fwd: Re: Paratool in VMD Syed Tarique Moin (Tue Dec 04 2007 - 05:18:08 CST)
- FreeVR wand Ahmed Nawar (Tue Dec 04 2007 - 03:42:13 CST)
- applying forces on a protein in VMD Peter Schellenberg (Tue Dec 04 2007 - 02:05:58 CST)
- Membrane POPC Francesco Pietra (Sat Dec 01 2007 - 17:07:50 CST)
- Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 15:02:52 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:58:31 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:59:55 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 18:31:17 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Axel Kohlmeyer (Sun Dec 02 2007 - 20:34:21 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 20:57:41 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) John Stone (Sun Dec 02 2007 - 21:19:51 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 23:24:35 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) John Stone (Sun Dec 02 2007 - 19:53:20 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:58:31 CST)
- Render Snapshot from the Tcl console (jpg gif format) Arneh Babakhani (Sun Dec 02 2007 - 15:02:52 CST)
- Multiseq Wendy Gonzlez (Fri Nov 30 2007 - 15:57:18 CST)
- psfgen delatom usage Stephen M. Dutz (Fri Nov 30 2007 - 15:36:18 CST)
- Timeline viewer Neelanjana Sengupta (Fri Nov 30 2007 - 09:50:33 CST)
- How to display Chain name in Labels TRINH Minh Hieu (Fri Nov 30 2007 - 07:33:57 CST)
- Command to change background to gradient TRINH Minh hieu (Fri Nov 30 2007 - 04:55:27 CST)
- SpaceNavigator Carsten Olbrich (Thu Nov 29 2007 - 11:23:01 CST)
- Re: SpaceNavigator John Stone (Thu Nov 29 2007 - 12:16:55 CST)
- Re: SpaceNavigator Carsten Olbrich (Fri Nov 30 2007 - 10:16:46 CST)
- Re: SpaceNavigator John Stone (Fri Nov 30 2007 - 10:24:02 CST)
- Re: SpaceNavigator Carsten Olbrich (Fri Nov 30 2007 - 10:58:32 CST)
- Re: SpaceNavigator John Stone (Fri Nov 30 2007 - 12:32:28 CST)
- Re: SpaceNavigator Carsten Olbrich (Mon Dec 03 2007 - 07:46:02 CST)
- Re: SpaceNavigator John Stone (Mon Dec 03 2007 - 18:52:09 CST)
- Re: SpaceNavigator Carsten Olbrich (Tue Dec 04 2007 - 01:21:46 CST)
- Re: SpaceNavigator John Stone (Tue Dec 04 2007 - 22:57:22 CST)
- Re: SpaceNavigator Carsten Olbrich (Fri Nov 30 2007 - 10:16:46 CST)
- Re: SpaceNavigator John Stone (Wed Jun 11 2008 - 02:53:39 CDT)
- Re: SpaceNavigator John Stone (Thu Nov 29 2007 - 12:16:55 CST)
- Water within the minmax of protein Pavan Ghatty (Thu Nov 29 2007 - 09:17:51 CST)
- problem with saving changed coordinates in a new state TaoJin (Wed Nov 28 2007 - 23:14:11 CST)
- Intersurf and interface residues Vincent Wolowski (Tue Nov 27 2007 - 13:34:40 CST)
- (UNCLASSIFIED) Balu, Radhakrishnan (Cont, ARL/WMRD) (Tue Nov 27 2007 - 09:18:18 CST)
- gaussinan_log_file_error_can't use empty string as operand of "/" Karol Kaszuba (Tue Nov 27 2007 - 03:28:04 CST)
- Paratools Syed Tarique Moin (Tue Nov 27 2007 - 03:06:27 CST)
- (no subject) Syed Tarique Moin (Mon Nov 26 2007 - 06:25:08 CST)
- difference for solvating a protein in long box suing or not using Molecule Dimensions Shulin Zhuang (Sun Nov 25 2007 - 16:43:40 CST)
- Delete overlapping residues Francesco Pietra (Sat Nov 24 2007 - 10:50:32 CST)
- Hydrophobicity plots in VMD aneesh cna (Sat Nov 24 2007 - 00:33:38 CST)
- Re: Hydrophobicity plots in VMD Peter Freddolino (Sat Nov 24 2007 - 08:36:20 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Sat Nov 24 2007 - 22:50:51 CST)
- Re: Hydrophobicity plots in VMD Axel Kohlmeyer (Sun Nov 25 2007 - 12:49:29 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Mon Nov 26 2007 - 04:09:44 CST)
- Re: Hydrophobicity plots in VMD John Stone (Mon Nov 26 2007 - 11:16:08 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Mon Nov 26 2007 - 23:31:43 CST)
- Re: Hydrophobicity plots in VMD John Stone (Tue Nov 27 2007 - 16:27:58 CST)
- Re: Hydrophobicity plots in VMD aneesh cna (Sat Nov 24 2007 - 22:50:51 CST)
- Re: Hydrophobicity plots in VMD Avell Diroll (Tue Nov 27 2007 - 03:22:21 CST)
- Re: Hydrophobicity plots in VMD Peter Freddolino (Sat Nov 24 2007 - 08:36:20 CST)
- cave Ahmed Nawar (Thu Nov 22 2007 - 06:09:24 CST)
- Re: cave John Stone (Thu Nov 22 2007 - 10:21:30 CST)
- RE: cave Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
- Re: cave John Stone (Sun Nov 25 2007 - 12:54:56 CST)
- RE: cave Axel Kohlmeyer (Sun Nov 25 2007 - 12:58:47 CST)
- RE: Suspected SpamFR:RE: cave Ahmed Nawar (Mon Nov 26 2007 - 00:54:23 CST)
- Re: Suspected SpamFR:RE: cave Axel Kohlmeyer (Mon Nov 26 2007 - 04:28:18 CST)
- cave Ahmed Nawar (Mon Nov 26 2007 - 06:12:41 CST)
- Re: cave John Stone (Mon Nov 26 2007 - 11:44:33 CST)
- Re: cave Ahmed Nawar (Tue Nov 27 2007 - 01:00:42 CST)
- RE: cave Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
- Re: cave John Stone (Thu Nov 22 2007 - 10:21:30 CST)
- solvate crashes Irene Newhouse (Thu Nov 22 2007 - 04:02:33 CST)
- problem with loading trajectories in timline plugin aneesh cna (Thu Nov 22 2007 - 00:24:00 CST)
- Re: analysing big trajectories (fwd) John Stone (Tue Nov 20 2007 - 17:30:59 CST)
- Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Tue Nov 20 2007 - 16:04:57 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine John Stone (Tue Nov 20 2007 - 17:24:36 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Axel Kohlmeyer (Wed Nov 21 2007 - 16:35:50 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 17:27:48 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine John Stone (Mon Nov 26 2007 - 19:00:24 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 19:30:32 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 20:09:30 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine Daniel Beaman (Mon Nov 26 2007 - 17:27:48 CST)
- analysing big trajectories Oliver Beckstein (Tue Nov 20 2007 - 14:28:45 CST)
- Potential map animation, help! Cesar Millan (Tue Nov 20 2007 - 12:40:59 CST)
- Calculate density Jianhui Tian (Mon Nov 19 2007 - 15:21:20 CST)
- vmd 1.8.6 doesn't run on Fedora Core 7 EMT64 Pascale Geysermans (Fri Nov 16 2007 - 09:37:50 CST)
- re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found James.Beavis_at_csiro.au (Wed Nov 14 2007 - 19:28:02 CST)
- combine.tcl membrane plugin Francesco Pietra (Wed Nov 14 2007 - 12:05:12 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
- Re: combine.tcl membrane plugin Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Thu Nov 15 2007 - 03:33:31 CST)
- Re: combine.tcl membrane plugin Francesco Pietra (Thu Nov 15 2007 - 09:50:36 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Thu Nov 15 2007 - 22:47:21 CST)
- gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions Thomas C. Bishop (Fri Nov 16 2007 - 17:12:27 CST)
- Re: gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions Axel Kohlmeyer (Sat Nov 17 2007 - 00:11:54 CST)
- Re: gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions Thomas C. Bishop (Mon Nov 19 2007 - 10:27:02 CST)
- Re: combine.tcl membrane plugin Peter Freddolino (Thu Nov 15 2007 - 09:44:00 CST)
- Re: combine.tcl membrane plugin Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
- Re: combine.tcl membrane plugin Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
- OpenGL Display Christopher Stiles (Tue Nov 13 2007 - 23:33:32 CST)
- installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found James.Beavis_at_csiro.au (Tue Nov 13 2007 - 21:47:43 CST)
- Dynamic bonds and H2 molecules. David Schall (Tue Nov 13 2007 - 11:17:30 CST)
- stride binaries for windows XP OS aneesh cna (Mon Nov 12 2007 - 23:21:34 CST)
- problem with colouring the surface with electroststic potential aneesh cna (Mon Nov 12 2007 - 23:15:25 CST)
- problems with atomselect: missing selection Philipp Schn (Mon Nov 12 2007 - 05:23:32 CST)
- POPS topology file lucie huynh (Mon Nov 12 2007 - 03:55:04 CST)
- Generatin PSF for alkanes Santanu Chatterjee (Sat Nov 10 2007 - 22:38:55 CST)
- merging two pdb files Dibyadeep Paul (Thu Nov 08 2007 - 06:06:19 CST)
- molfile reader plugin woes Olaf Lenz (Thu Nov 08 2007 - 02:31:42 CST)
- VMD/NAMD at SC2007 John Stone (Wed Nov 07 2007 - 21:41:57 CST)
- question about ionization Anatoliy (Wed Nov 07 2007 - 12:10:12 CST)
- Out of office until Nov. 16 John Stone (Wed Nov 07 2007 - 11:57:55 CST)
- merge pbd psf files (update) Alessio Alexiadis (Wed Nov 07 2007 - 07:47:48 CST)
- combine together two PBD/PSF files Alessio Alexiadis (Wed Nov 07 2007 - 07:38:42 CST)
- vmd command delay jiwu liu (Mon Nov 05 2007 - 16:55:50 CST)
- Download vmd for 64-bit Intel Itanium FyD (Mon Nov 05 2007 - 15:00:36 CST)
- question about water sphere script Anatoliy (Mon Nov 05 2007 - 11:21:54 CST)
- Alignment Zhaochuan Shen (Thu Nov 01 2007 - 16:52:12 CDT)
- Re: Alignment John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
- Re: Alignment John Stone (Sun Nov 04 2007 - 13:53:06 CST)
- Re: Alignment Zhaochuan Shen (Mon Nov 05 2007 - 11:41:52 CST)
- Re: Alignment Giovanni Bellesia (Mon Nov 05 2007 - 12:10:58 CST)
- Tripos mol2 file in VMD FyD (Mon Nov 05 2007 - 14:57:03 CST)
- Re: Tripos mol2 file in VMD Peter Freddolino (Mon Nov 05 2007 - 14:59:39 CST)
- Re: Tripos mol2 file in VMD FyD (Mon Nov 05 2007 - 15:14:20 CST)
- Re: Tripos mol2 file in VMD Peter Freddolino (Mon Nov 05 2007 - 15:02:36 CST)
- Re: Alignment John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
- problem with protein RMSD calculation due to incomplete wrapping of both peptide chains Maria Bagonis (Thu Nov 01 2007 - 16:11:04 CDT)
- cloning a molecule dimka (Thu Nov 01 2007 - 13:46:44 CDT)
- TMD in NAMD: cannot reach target lily jin (Thu Nov 01 2007 - 13:13:23 CDT)
- vmd ubuntu crash jacopo.sgrignani_at_unifi.it (Thu Nov 01 2007 - 11:45:04 CDT)
- aligning protein based on one helix of protein maria goranovic (Wed Oct 31 2007 - 08:48:29 CDT)
- CMYK Adrian Roitberg (Tue Oct 30 2007 - 16:08:37 CDT)
- Re: namd-l: NAMDEnergy lily jin (Tue Oct 30 2007 - 12:34:43 CDT)
- NAMDEnergy lily jin (Tue Oct 30 2007 - 12:00:57 CDT)
- Re: rna topology and parameters for rna Per Jr. Greisen (Sun Oct 28 2007 - 04:56:03 CDT)
- how to display dcd file written with catdcd using an index file Irene Newhouse (Fri Oct 26 2007 - 14:08:44 CDT)
- periodic box manipulation Vlad Cojocaru (Fri Oct 26 2007 - 07:39:58 CDT)
- installation of APBS plug-in in VMD 1.8.6 Lhee, SangMoon (Thu Oct 25 2007 - 21:14:47 CDT)
- Writing in NAMD binary format in VMD from TCl/Tk console? poker_at_physics.usyd.edu.au (Tue Oct 23 2007 - 20:33:05 CDT)
- superposition of two complex according to the same inhibitor Emilia Wu (Mon Oct 22 2007 - 21:42:59 CDT)
- FW: VMD & OpenGL GLX Extension Meij, Henk (Mon Oct 22 2007 - 14:55:42 CDT)
- status of psfgen support for CHARMM psf format Dow Hurst DPHURST (Mon Oct 22 2007 - 09:37:30 CDT)
- Color by Volume on an Intel 945GM Jeffry D Madura (Sat Oct 20 2007 - 14:42:07 CDT)
- how to remove chain id ? Sanghyun Park (Fri Oct 19 2007 - 21:57:10 CDT)
- Extracting IR spectra from trajectories Cesar Luis Avila (Fri Oct 19 2007 - 10:08:45 CDT)
- Problem with bigdcd Vishal Kopard (Fri Oct 19 2007 - 09:03:24 CDT)
- APBS dx colors depend on order of molec files loaded??? Chari, Ravi (Thu Oct 18 2007 - 14:52:48 CDT)
- RE: multiple attempts before vmd starts up ZT Yew (Thu Oct 18 2007 - 07:03:23 CDT)
- multiple attempts before vmd starts up ZT Yew (Wed Oct 17 2007 - 20:25:55 CDT)
- (no subject) ZT Yew (Wed Oct 17 2007 - 18:26:24 CDT)
- Exelent quality watch Landon Beaver (Wed Oct 17 2007 - 17:56:35 CDT)
- H- bond emra Heshmati (Wed Oct 17 2007 - 12:16:47 CDT)
- Is catdcd running on Windows? Philipp Schn (Wed Oct 17 2007 - 03:45:54 CDT)
- Problem vmd1.8.5 & vmd1.8.6 on a mac-pro running ubuntu ZT Yew (Tue Oct 16 2007 - 10:13:22 CDT)
- Error with stride Per Jr. Greisen (Tue Oct 16 2007 - 09:01:21 CDT)
- bonds across periodic boundaries Barry Bickmore (Tue Oct 16 2007 - 08:53:09 CDT)
- Strange behaviour of MSMS Ezequiel Quintana Morales (Tue Oct 16 2007 - 07:33:07 CDT)
- Re: residue selection (water molecule within 5 ang. to protein in simulation) kinshuk_at_chem.iitb.ac.in (Mon Oct 15 2007 - 23:54:21 CDT)
- Problems Opening Large .dx File Corenflos, Steven Charles (Mon Oct 15 2007 - 11:30:04 CDT)
- Generating parameter file for Cl2- Per Jr. Greisen (Mon Oct 15 2007 - 10:39:36 CDT)
- setting unit cell dimensions bbickmore_at_comcast.net (Sun Oct 14 2007 - 23:07:50 CDT)
- combine.tcl error Francesco Pietra (Sun Oct 14 2007 - 03:23:23 CDT)
- residue selection (water molecule within 5 ang. to protein in simulation) kinshuk_at_chem.iitb.ac.in (Sun Oct 14 2007 - 02:21:32 CDT)
- Small molecules Amit (Fri Oct 12 2007 - 18:02:51 CDT)
- residue selection Giovanni Bellesia (Fri Oct 12 2007 - 14:19:32 CDT)
- VMD access using XWIN32 or X-Deep Deepangi Pandit (Fri Oct 12 2007 - 13:20:01 CDT)
- Fixing the View in a Movie carlos_at_avalon.umaryland.edu (Fri Oct 12 2007 - 11:44:45 CDT)
- VMD access using XWIN32 or X-Deep Deepangi Pandit (Fri Oct 12 2007 - 11:35:52 CDT)
- RMSD Trajectory Tool Zhaochuan Shen (Wed Oct 10 2007 - 13:09:22 CDT)
- Re: namd-l: Molecule drifts and high average RMSD per residue Peter Freddolino (Tue Oct 09 2007 - 09:45:23 CDT)
- Rotate a box with pcb Matteo Guglielmi (Tue Oct 09 2007 - 07:02:34 CDT)
- Re: You are right. That's the problem. Axel Kohlmeyer (Mon Oct 08 2007 - 12:10:07 CDT)
- Normal VMD crashed when pdb load but Debug mode works weilin Zhang (Mon Oct 08 2007 - 09:45:50 CDT)
- the representation of within 10 angstrom of a specific point Emilia Wu (Sun Oct 07 2007 - 22:01:08 CDT)
- Cube Files - proportion of the electron density Jay Shore (Sun Oct 07 2007 - 15:50:40 CDT)
- NAMDENERGY analysis Narender Singh Maan (Thu Oct 04 2007 - 13:34:16 CDT)
- How to put metal ion into my protein Shulin Zhuang (Wed Oct 03 2007 - 22:29:40 CDT)
- no transparency on newest iMacs Christoph Weber (Wed Oct 03 2007 - 19:05:21 CDT)
- Re: Installation and running on VMD on Debian Testing System Brian Bennion (Wed Oct 03 2007 - 09:51:54 CDT)
- creating nonstandard solvent lucie huynh (Wed Oct 03 2007 - 07:53:21 CDT)
- Installation and running on VMD on Debian Testing System Lorenzo Isella (Wed Oct 03 2007 - 07:48:08 CDT)
- time step Alessio Alexiadis (Wed Oct 03 2007 - 07:44:13 CDT)
- hbonds (how to count) Alessio Alexiadis (Wed Oct 03 2007 - 03:28:52 CDT)
- namdenergy problem Narender Singh Maan (Tue Oct 02 2007 - 14:53:47 CDT)
- query regarding membrane building kalyan chaitanya (Sat Sep 29 2007 - 09:41:14 CDT)
- util Peter Freddolino (Fri Sep 28 2007 - 16:39:56 CDT)
- Storing multiple values in the user field Bob Johnson (Fri Sep 28 2007 - 16:15:05 CDT)
- video memory and volumetric data Jim Fonseca (Fri Sep 28 2007 - 15:15:02 CDT)
- behavior of "mol addfile first/last" with non-integer frame numbers Axel Kohlmeyer (Thu Sep 27 2007 - 19:35:40 CDT)
- Charlie Buy your loved one Hermes Dick Medrano (Thu Sep 27 2007 - 20:39:34 CDT)
- vmd files between linux and windows Sampo Karkola (Thu Sep 27 2007 - 07:52:16 CDT)
- atom index number Naser, Md Abu (Thu Sep 27 2007 - 01:28:29 CDT)
- How can I get .xyzr file or .xyzrn file? ChenFei (Wed Sep 26 2007 - 02:27:51 CDT)
- topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp Dhiraj Srivastava (Tue Sep 25 2007 - 19:00:30 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp Dhiraj Srivastava (Tue Sep 25 2007 - 19:33:14 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp L. Michel Espinoza-Fonseca (Tue Sep 25 2007 - 19:33:46 CDT)
- RE: Can't execvp vmd_SOLARISX86 Austin Small (Tue Sep 25 2007 - 16:14:16 CDT)
- MultiSeq on the windows vista OS Lhee, SangMoon (Mon Sep 24 2007 - 13:30:25 CDT)
- Can't execvp vmd_SOLARISX86 Austin Small (Sun Sep 23 2007 - 23:42:50 CDT)
- residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 13:22:45 CDT)
- Re: residue selection: conflict between resid and residue Axel Kohlmeyer (Fri Sep 21 2007 - 13:15:29 CDT)
- Re: residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 15:14:23 CDT)
- Re: residue selection: conflict between resid and residue John Stone (Fri Sep 21 2007 - 15:24:04 CDT)
- Re: residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 16:04:56 CDT)
- Re: residue selection: conflict between resid and residue Axel Kohlmeyer (Fri Sep 21 2007 - 17:08:32 CDT)
- Re: residue selection: conflict between resid and residue Nicolas Sapay (Fri Sep 21 2007 - 15:14:23 CDT)
- Re: residue selection: conflict between resid and residue Axel Kohlmeyer (Fri Sep 21 2007 - 13:15:29 CDT)
- Create a PSF Andrea.Cristiani_at_pharm.unige.ch (Fri Sep 21 2007 - 04:16:37 CDT)
- output of distances between atoms or coordinates INPE (Ingrid Viveka Pettersson) (Thu Sep 20 2007 - 08:27:39 CDT)
- Problem generating PSF file for decalanine...any help? Santanu Chatterjee (Wed Sep 19 2007 - 18:24:38 CDT)
- Problem generating PSF file for decalanine...any help? Santanu Chatterjee (Wed Sep 19 2007 - 18:20:58 CDT)
- sidechain correlated motions L. Michel Espinoza-Fonseca (Wed Sep 19 2007 - 17:18:04 CDT)
- smooting structure Myunggi Yi (Wed Sep 19 2007 - 11:38:23 CDT)
- Residue highlighting in MD Traj M kutty (Wed Sep 19 2007 - 03:15:09 CDT)
- passive stereo projection using a Mac Jeff Hoch (Tue Sep 18 2007 - 12:18:15 CDT)
- change the representation of certain atoms which pass a geometric criterion during a movie maria goranovic (Tue Sep 18 2007 - 08:21:45 CDT)
- Re: osx startup script John Stone (Mon Sep 17 2007 - 15:34:55 CDT)
- problem with timeline plugin aneesh cna (Mon Sep 17 2007 - 05:33:29 CDT)
- problems with ADP vanadate Daniel Kennedy (Sun Sep 16 2007 - 11:12:09 CDT)
- VMD text mode version Myunggi Yi (Fri Sep 14 2007 - 10:10:58 CDT)
- "truncate_trajectory" a new plugin (Fri Sep 14 2007 - 10:01:23 CDT)
- Questions abt VMD plugins Audrey Salazar (Fri Sep 14 2007 - 08:59:48 CDT)
- secondary structure colors in timeline plugin cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 07:51:31 CDT)
- Generating water transparency around a protein Jeffry D Madura (Fri Sep 14 2007 - 06:31:14 CDT)
- VMD on Playstation 3 Jeffry D Madura (Fri Sep 14 2007 - 06:30:58 CDT)
- secondary structure colors in timeline plugin cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 06:24:30 CDT)
- Problems with a multiple orbital cube file Dr. Seth Olsen (Fri Sep 14 2007 - 01:49:38 CDT)
- VMD Images and Movies Tutorial: Working With Trajectories Roland Schmucki (Thu Sep 13 2007 - 03:32:05 CDT)
- Re: program finishes before bigdcd is executed completely (Tue Sep 11 2007 - 13:56:32 CDT)
- program finishes before bigdcd is ececuted completely (Mon Sep 10 2007 - 14:57:11 CDT)
- polymer molecule orientation parameter Catherine Tweedie (Mon Sep 10 2007 - 13:45:11 CDT)
- changing the tilt angle of a peptide embedded in a membrane L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:08:38 CDT)
- changing the tile angle of a peptide embedded in a membrane L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 12:57:13 CDT)
- problem regarding timeline aneesh cna (Mon Sep 10 2007 - 10:54:01 CDT)
- Re: namd-l: STRIDE Algorithm L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 10:43:56 CDT)
- GLSL rendering mode is NOT available Roland Schmucki (Mon Sep 10 2007 - 07:04:48 CDT)
- Further angle question jo hanna (Sat Sep 08 2007 - 09:16:15 CDT)
- vmdbasename: Undefined variable Austin Small (Sat Sep 08 2007 - 12:13:41 CDT)
- Computing angles jo hanna (Fri Sep 07 2007 - 17:18:33 CDT)
- Fwd: peptide builder L. Michel Espinoza-Fonseca (Fri Sep 07 2007 - 11:35:39 CDT)
- is it possible to skip frame when using bigdcd maria goranovic (Fri Sep 07 2007 - 03:47:05 CDT)
- Averaging volmaps Cesar Luis Avila (Thu Sep 06 2007 - 10:11:36 CDT)
- the console window is automatically closed without any error messages Hu Zhonghan (Thu Sep 06 2007 - 10:05:15 CDT)
- PMEpot + bigDCD ? Cesar Luis Avila (Wed Sep 05 2007 - 15:08:00 CDT)
- Solvate package brmorgan_at_clarku.edu (Wed Sep 05 2007 - 13:02:03 CDT)
- Rebuilding lipid from headgroup coordinates only using psfgen, some atoms put on origin maria goranovic (Wed Sep 05 2007 - 11:05:12 CDT)
- advanced python console Gianluca Santarossa (Tue Sep 04 2007 - 09:17:45 CDT)
- regular expression in Tcl (Tue Sep 04 2007 - 06:13:56 CDT)
- Your Zoc0r 0rder #46390 Vito Ashley (Tue Sep 04 2007 - 03:20:14 CDT)
- Stylish repl1ca w4tches from famous brands Susan Langston (Tue Sep 04 2007 - 03:16:35 CDT)
- Delightsome Cart1er w4tches at Prest1ge Repl1cas Carson Cope (Fri Aug 31 2007 - 13:58:34 CDT)
- Your Val1um 0rder #799563 Eliza Wray (Fri Aug 31 2007 - 10:02:23 CDT)
- How to solvate a protein in a large water sphere Shulin Zhuang (Fri Aug 31 2007 - 03:44:50 CDT)
- Problem with saving coordinate bo baker (Thu Aug 30 2007 - 22:44:57 CDT)
- Re: Problem with saving coordinate Axel Kohlmeyer (Fri Aug 31 2007 - 00:17:25 CDT)
- Re: Problem with saving coordinate bo baker (Fri Aug 31 2007 - 01:55:26 CDT)
- Re: Problem with saving coordinate John Stone (Fri Aug 31 2007 - 02:08:30 CDT)
- Re: Problem with saving coordinate bo baker (Sat Sep 01 2007 - 18:49:57 CDT)
- Re: Problem with saving coordinate John Stone (Sat Sep 01 2007 - 21:04:16 CDT)
- Re: Problem with saving coordinate bo baker (Sun Sep 02 2007 - 20:18:13 CDT)
- Re: Problem with saving coordinate bo baker (Fri Aug 31 2007 - 01:55:26 CDT)
- Re: Problem with saving coordinate Axel Kohlmeyer (Fri Aug 31 2007 - 00:17:25 CDT)
- solvation Francesco Pietra (Thu Aug 30 2007 - 15:05:59 CDT)
- RE: VMD analysis using NAMD plot Richard Swenson (Wed Aug 29 2007 - 10:42:59 CDT)
- VMD analysis using NAMD plot Philipp Schn (Wed Aug 29 2007 - 05:47:01 CDT)
- dcd file error dimka (Tue Aug 28 2007 - 17:50:52 CDT)
- numbonds Eduard Schreiner (Tue Aug 28 2007 - 10:54:20 CDT)
- Delightful repl1ca w4tches at Prest1ge Repl1cas Kenton Webster (Tue Aug 28 2007 - 09:33:17 CDT)
- Re: Your Pharm4cy 0rder #530152 Susanna Crowe (Tue Aug 28 2007 - 05:22:21 CDT)
- TIP5P jestin mandumpal (Sun Aug 26 2007 - 23:41:03 CDT)
- coordinates with get command Nuno Loureiro Ferreira (Sat Aug 25 2007 - 18:10:02 CDT)
- Prest1ge Repl1cas ravishing repl1ca w4tches for you Liliana Dawson (Sat Aug 25 2007 - 12:24:44 CDT)
- No prescr1ption? No problem! Buford Greene (Sat Aug 25 2007 - 09:27:00 CDT)
- changing the order of atom selections / alignment issue Jim Pfaendtner (Fri Aug 24 2007 - 17:58:51 CDT)
- vmd-1.8.6 fails with python-2.5 Jeffrey Gardner (Fri Aug 24 2007 - 17:20:51 CDT)
- measure imprp - input order of atoms Johannes Mllegger (Fri Aug 24 2007 - 14:51:00 CDT)
- atomselection in order Myunggi Yi (Thu Aug 23 2007 - 22:19:35 CDT)
- Re: atomselection in order Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
- Re: atomselection in order Thomas C. Bishop (Mon Aug 27 2007 - 09:34:15 CDT)
- Re: atomselection in order Myunggi Yi (Tue Aug 28 2007 - 08:29:03 CDT)
- Re: atomselection in order Myunggi Yi (Tue Aug 28 2007 - 09:22:35 CDT)
- Re: atomselection in order Leonardo Trabuco (Tue Aug 28 2007 - 10:12:10 CDT)
- Re: atomselection in order Myunggi Yi (Tue Aug 28 2007 - 16:35:49 CDT)
- Re: atomselection in order John Stone (Wed Aug 29 2007 - 00:11:02 CDT)
- Re: atomselection in order Myunggi Yi (Thu Aug 30 2007 - 08:49:25 CDT)
- Re: atomselection in order Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
- Aggregation analysis zhenlong li (Thu Aug 23 2007 - 10:07:49 CDT)
- Selection within VMD Mark Zottola (Wed Aug 22 2007 - 14:28:53 CDT)
- Re: FYI: 1.8.6 runs full GLSL on AMD64 John Stone (Wed Aug 22 2007 - 13:40:37 CDT)
- automating graphic representations Jim Pfaendtner (Wed Aug 22 2007 - 13:37:41 CDT)
- W4tches from simple to luxurious at Prest1ge Repl1cas Douglas Dahl (Wed Aug 22 2007 - 13:49:57 CDT)
- The only med1cation for we1ght l0ss that does work Mayra Underwood (Wed Aug 22 2007 - 13:03:07 CDT)
- VMD w/ amber parm7, segnames/chains etc... Thomas C. Bishop (Wed Aug 22 2007 - 09:30:57 CDT)
- Selecting the N-closest Waters J T (Tue Aug 21 2007 - 12:40:19 CDT)
- Re: Selecting the N-closest Waters Nuno Loureiro Ferreira (Tue Aug 21 2007 - 15:55:13 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 16:10:03 CDT)
- Re: Selecting the N-closest Waters Nuno Loureiro Ferreira (Tue Aug 21 2007 - 16:34:25 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 18:54:08 CDT)
- Re: Selecting the N-closest Waters Axel Kohlmeyer (Tue Aug 21 2007 - 18:23:55 CDT)
- Re: Selecting the N-closest Waters Axel Kohlmeyer (Tue Aug 21 2007 - 19:26:57 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 20:00:47 CDT)
- Re: Selecting the N-closest Waters Axel Kohlmeyer (Tue Aug 21 2007 - 20:35:16 CDT)
- Re: Selecting the N-closest Waters J T (Tue Aug 21 2007 - 16:10:03 CDT)
- Re: Selecting the N-closest Waters Claw Isthelaw (Mon Jun 02 2008 - 13:25:51 CDT)
- Re: Selecting the N-closest Waters Nuno Loureiro Ferreira (Tue Aug 21 2007 - 15:55:13 CDT)
- How to load packages from tcllib into VMD Cesar Luis Avila (Mon Aug 20 2007 - 14:59:49 CDT)
- VMD crashes during the execution of a computational intensive TCL script (Mon Aug 20 2007 - 16:25:33 CDT)
- residue missed by psfgen Daniel Kennedy (Mon Aug 20 2007 - 12:09:05 CDT)
- No prescr1ption? No problem! Ferdinand Benton (Sun Aug 19 2007 - 10:50:20 CDT)
- Luxurious costume repl1ca w4tches at lowest prices Marvin Allen (Sun Aug 19 2007 - 08:30:41 CDT)
- Need help sleeping? Read this! Kendra Baker (Thu Aug 16 2007 - 20:39:47 CDT)
- Prest1ge Repl1cas your source for high-quality w4tches Lula Miner (Thu Aug 16 2007 - 19:21:55 CDT)
- NAMD energy plugin Cesar Luis Avila (Wed Aug 15 2007 - 08:22:59 CDT)
- Very peculiar problem with bigdcd if not running interactively (post moved over from namd forum) maria goranovic (Wed Aug 15 2007 - 04:09:32 CDT)
- Installing VMD to work with MSMS Audrey Salazar (Tue Aug 14 2007 - 11:07:38 CDT)
- Archived Spam in the VMD-L Mailing List Audrey Salazar (Tue Aug 14 2007 - 10:00:30 CDT)
- Increasing use of RAM even if I put unset/delete for selections! Due to use of arrays? Philipp Schn (Tue Aug 14 2007 - 05:28:13 CDT)
- printing timeline window with axes hodak_at_chips.ncsu.edu (Mon Aug 13 2007 - 22:07:27 CDT)
- Re: help with badwater script Jim Pfaendtner (Mon Aug 13 2007 - 18:38:12 CDT)
- Re: Re: help with badwater script Axel Kohlmeyer (Mon Aug 13 2007 - 19:08:30 CDT)
- Re: Re: help with badwater script Jim Pfaendtner (Tue Aug 14 2007 - 15:29:12 CDT)
- Changing the Index values of a molecule (the differenece between gro and pdb files) Arneh Babakhani (Wed Aug 15 2007 - 12:39:08 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Peter Freddolino (Wed Aug 15 2007 - 12:34:52 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Arneh Babakhani (Wed Aug 15 2007 - 13:06:17 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Axel Kohlmeyer (Wed Aug 15 2007 - 12:51:30 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) Giovanni Bellesia (Wed Aug 15 2007 - 13:32:56 CDT)
- Re: Re: help with badwater script Jim Pfaendtner (Tue Aug 14 2007 - 15:29:12 CDT)
- Re: Re: help with badwater script Axel Kohlmeyer (Mon Aug 13 2007 - 19:08:30 CDT)
- new machine problems. Fred Moore (Mon Aug 13 2007 - 17:58:46 CDT)
- create psf and dcd from pdb (Mon Aug 13 2007 - 16:26:27 CDT)
- problem regarding stride aneesh cna (Mon Aug 13 2007 - 05:31:32 CDT)
- problem regarding stride aneesh cna (Mon Aug 13 2007 - 00:58:09 CDT)
- VMD plugin error src/webpdbplugin.c AustinSmall_at_comcast.net (Sun Aug 12 2007 - 18:08:17 CDT)
- chime vs vmd Francesco Pietra (Sun Aug 12 2007 - 11:11:05 CDT)
- RE: plotting on Mac Claw Isthelaw (Sat Aug 11 2007 - 19:53:35 CDT)
- Reference for SASA Patrick Redmill (Sat Aug 11 2007 - 17:48:03 CDT)
- Re: gmake invalid option --c install AustinSmall_at_comcast.net (Sat Aug 11 2007 - 12:52:32 CDT)
- gmake invalid option --c install AustinSmall_at_comcast.net (Sat Aug 11 2007 - 10:47:45 CDT)
- RE: bilayer thickness in simulation of POPC membranes Cojocaru,Vlad (Sat Aug 11 2007 - 10:08:28 CDT)
- Adjusting R/S configuration Francesco Pietra (Sat Aug 11 2007 - 02:21:47 CDT)
- problem regarding stride gurpreet singh (Sat Aug 11 2007 - 01:44:25 CDT)
- povray problem: degenerate cylinder revisited Robin L Hayes (Fri Aug 10 2007 - 17:22:37 CDT)
- Color a protein based on a property Naresh (Fri Aug 10 2007 - 14:13:42 CDT)
- dcd reading routines nmichaud_at_jhu.edu (Fri Aug 10 2007 - 13:12:15 CDT)
- bilayer thickness in simulation of POPC membranes Vlad Cojocaru (Fri Aug 10 2007 - 10:56:41 CDT)
- how to make user input during runtime of a tcl program using TkConsole? Philipp Schn (Fri Aug 10 2007 - 10:14:46 CDT)
- mutate residue xzhao_at_uiuc.edu (Thu Aug 09 2007 - 21:02:15 CDT)
- What does Stride need to draw SS? Jim Pfaendtner (Thu Aug 09 2007 - 16:49:58 CDT)
- package require Tcl 8.5 => ::tcl::mathfunc:: Philipp Schn (Thu Aug 09 2007 - 10:56:09 CDT)
- radial density Christopher Stiles (Thu Aug 09 2007 - 09:11:55 CDT)
- Monte Carlo conformational search Daniel Kennedy (Wed Aug 08 2007 - 11:23:54 CDT)
- Writing MolFile plugin for CIF Ondrej Sramek (Wed Aug 08 2007 - 06:12:03 CDT)
- VMD acts too slow Roland Schmucki (Tue Aug 07 2007 - 20:38:49 CDT)
- CNT Analysis Christopher Stiles (Tue Aug 07 2007 - 08:41:31 CDT)
- a problem with installation (to generate the Makefile ) Panichakorn Jaiyong (Mon Aug 06 2007 - 23:52:26 CDT)
- VMD plugins error AustinSmall_at_comcast.net (Mon Aug 06 2007 - 22:18:52 CDT)
- within and exwithin macro (Mon Aug 06 2007 - 16:52:34 CDT)
- Automatic PSF Builder Help Audrey Salazar (Mon Aug 06 2007 - 11:16:12 CDT)
- Re: Automatic PSF Builder Help Peter Freddolino (Mon Aug 06 2007 - 11:46:46 CDT)
- Re: Automatic PSF Builder Help Axel Kohlmeyer (Mon Aug 06 2007 - 11:29:16 CDT)
- Loading files into already-running version of VMD from command prompt Victor Albert (Sat Aug 04 2007 - 16:04:16 CDT)
- chloroform box Francesco Pietra (Sat Aug 04 2007 - 00:52:20 CDT)
- Corrupt cpmd-vmd.pdf File? rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:46:07 CDT)
- Corrupt cpmd-vmd.pdf File? rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:42:54 CDT)
- How to calculate the C alpha RMSD from NAMD trajectory Shulin Zhuang (Fri Aug 03 2007 - 02:31:22 CDT)
- save state fails Vlad Cojocaru (Thu Aug 02 2007 - 10:09:12 CDT)
- eigen values Myunggi Yi (Wed Aug 01 2007 - 14:36:00 CDT)
- ViewMaster and rendering Paula Marcela Petrone (Wed Aug 01 2007 - 10:00:34 CDT)
- question about measure contacts Rachel (Tue Jul 31 2007 - 08:42:57 CDT)
- coloring selected chains and residues karan uppal (Mon Jul 30 2007 - 18:58:05 CDT)
- Problems to load Gaussian .log file in Paratool Alexandre Suman de Araujo (Mon Jul 30 2007 - 13:05:56 CDT)
- Tachyon doesn't take into account ColorID Henry Yuen (Mon Jul 30 2007 - 12:54:13 CDT)
- adding urea to a protein-water system L. Michel Espinoza-Fonseca (Mon Jul 30 2007 - 05:05:46 CDT)
- PBC problem in gofr sfrickenhaus (Mon Jul 30 2007 - 04:53:40 CDT)
- RE: problem with rmsd-fullthrottle Irene Newhouse (Sat Jul 28 2007 - 15:02:54 CDT)
- can't add packages karan uppal (Sat Jul 28 2007 - 12:59:37 CDT)
- orientation of hexahedrons parallelepipeds unit cells relative to x,y axes (Sat Jul 28 2007 - 09:03:23 CDT)
- problem with rmsd-fullthrottle Irene Newhouse (Fri Jul 27 2007 - 15:16:54 CDT)
- Wrap only whole molecules zhenlong li (Fri Jul 27 2007 - 13:00:54 CDT)
- dssp in vmd (II) pascal.baillod_at_epfl.ch (Fri Jul 27 2007 - 05:04:54 CDT)
- RE: puzzling psfgen problem with deleted atoms coming back Irene Newhouse (Thu Jul 26 2007 - 17:40:01 CDT)
- RE: residue_rmsd.tcl Irene Newhouse (Thu Jul 26 2007 - 16:17:46 CDT)
- installation errors with src/hesstrans_wrap.C AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:16:39 CDT)
- puzzling psfgen problem with deleted atoms coming back Irene Newhouse (Fri Jul 13 2007 - 16:47:05 CDT)
- (no subject) AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:06:23 CDT)
- badwater script - help Jim Pfaendtner (Thu Jul 26 2007 - 15:18:48 CDT)
- residue_rmsd.tcl Irene Newhouse (Thu Jul 26 2007 - 12:37:51 CDT)
- python and C++ extensions karan uppal (Thu Jul 26 2007 - 11:19:06 CDT)
- deposition simulation from lammps Kathleen Barron (Thu Jul 26 2007 - 11:04:33 CDT)
- Rotation matrix translatin vector vmd Hazai Eszter (Thu Jul 26 2007 - 05:37:23 CDT)
- nonstandard solvate + cyclic peptides in explicit DMSO box + gofr sfrickenhaus (Thu Jul 26 2007 - 04:45:13 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr Peter Freddolino (Thu Jul 26 2007 - 07:41:24 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr John Stone (Thu Jul 26 2007 - 11:33:52 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr Axel Kohlmeyer (Thu Jul 26 2007 - 11:48:08 CDT)
- Boundry Dimensions for Solvation Vijaya Brahma (Thu Jul 26 2007 - 04:25:03 CDT)
- Re: ntermolecular atomselection Nuno Loureiro Ferreira (Thu Jul 26 2007 - 03:23:25 CDT)
- ntermolecular atomselection Robert Wohlhueter (Thu Jul 26 2007 - 00:27:38 CDT)
- Boundry Dimensions for Solvation Vijaya Brahma (Wed Jul 25 2007 - 23:56:13 CDT)
- vmd multiple residue snoze pa (Wed Jul 25 2007 - 14:42:05 CDT)
- vmd residue position snoze pa (Wed Jul 25 2007 - 14:29:51 CDT)
- how to run VMD on IBM machines Rachel (Wed Jul 25 2007 - 11:11:34 CDT)
- how to wrap trajectory into truncated octahedral box Rachel (Wed Jul 25 2007 - 10:51:54 CDT)
- Re: how to wrap trajectory into truncated octahedral box Olaf Lenz (Wed Jul 25 2007 - 12:39:39 CDT)
- Re: how to wrap trajectory into truncated octahedral box David A. Case (Mon Jul 30 2007 - 11:30:15 CDT)
- Calculating volumetric data for a molecule Cesar Luis Avila (Tue Jul 24 2007 - 17:30:43 CDT)
- NAMDEnergy virginia miguel (Tue Jul 24 2007 - 13:18:37 CDT)
- frame number input in tcl and direct mol graph display update (II) pascal.baillod_at_epfl.ch (Tue Jul 24 2007 - 09:36:35 CDT)
- how to select atoms according to b-factor Rachel (Mon Jul 23 2007 - 07:37:05 CDT)
- saltbr# vs. frames hori koshii (Mon Jul 23 2007 - 06:50:10 CDT)
- Autopsf snoze pa (Fri Jul 20 2007 - 12:42:18 CDT)
- Parameter snoze pa (Fri Jul 20 2007 - 12:03:12 CDT)
- what's the unit for color scale data range? Insight II (Thu Jul 19 2007 - 15:09:17 CDT)
- Re: what's the unit for color scale data range? Leonardo Trabuco (Thu Jul 19 2007 - 15:35:27 CDT)
- Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Thu Jul 19 2007 - 18:01:01 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) Axel Kohlmeyer (Fri Jul 20 2007 - 00:02:24 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Fri Jul 20 2007 - 09:19:00 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) John Stone (Fri Jul 20 2007 - 11:27:39 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Fri Jul 20 2007 - 12:35:24 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) John Stone (Fri Jul 20 2007 - 13:27:53 CDT)
- Recognized atom types by VMD PDB reader Arneh Babakhani (Fri Jul 20 2007 - 12:52:48 CDT)
- Re: Recognized atom types by VMD PDB reader John Stone (Fri Jul 20 2007 - 13:31:15 CDT)
- Reading a pdbqt file (generated from AutoDock) Arneh Babakhani (Thu Jul 19 2007 - 18:01:01 CDT)
- Re: what's the unit for color scale data range? John Stone (Fri Jul 20 2007 - 11:23:46 CDT)
- Re: what's the unit for color scale data range? Leonardo Trabuco (Thu Jul 19 2007 - 15:35:27 CDT)
- Writing out .dcd for discontinous frames Neelanjana Sengupta (Thu Jul 19 2007 - 00:09:36 CDT)
- Setting modstyle volumeslice options via tk console Cesar Luis Avila (Wed Jul 18 2007 - 15:16:20 CDT)
- Re: Making a selection from another selection Arneh Babakhani (Tue Jul 17 2007 - 20:35:19 CDT)
- water sphere? Daniel Kennedy (Tue Jul 17 2007 - 16:40:57 CDT)
- Regarding APBS calculation in VMD naga raju (Tue Jul 17 2007 - 07:39:06 CDT)
- TkCon problem luca.dallaglio2_at_studio.unibo.it (Mon Jul 16 2007 - 02:15:29 CDT)
- atoms deleted in patch try to come back Irene Newhouse (Sun Jul 15 2007 - 01:01:48 CDT)
- Language definitions - \usepackage{listings} Nuno Loureiro Ferreira (Sat Jul 14 2007 - 10:47:57 CDT)
- Re: Language definitions - \usepackage{listings} John Stone (Mon Jul 16 2007 - 11:58:29 CDT)
- RDF calculations Fred Moore (Fri Jul 13 2007 - 15:16:40 CDT)
- how to save a list in a file sally cii (Fri Jul 13 2007 - 12:02:02 CDT)
- Re: how to save a list in a file Axel Kohlmeyer (Fri Jul 13 2007 - 13:04:16 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Sat Jul 14 2007 - 11:49:29 CDT)
- Re: how to save a list in a file sally cii (Mon Jul 16 2007 - 07:12:14 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 02:57:40 CDT)
- Re: how to save a list in a file sally cii (Tue Jul 17 2007 - 09:09:45 CDT)
- Re: how to save a list in a file John Stone (Tue Jul 17 2007 - 11:08:19 CDT)
- Re: how to save a list in a file sally cii (Tue Jul 17 2007 - 11:58:39 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 12:12:56 CDT)
- Re: how to save a list in a file John Stone (Tue Jul 17 2007 - 12:07:55 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:18:04 CDT)
- Re: how to save a list in a file Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:31:00 CDT)
- Re: how to save a list in a file sally cii (Mon Jul 16 2007 - 07:12:14 CDT)
- Problem with namdstats.tcl in TkCon luca.dallaglio2_at_studio.unibo.it (Fri Jul 13 2007 - 03:12:03 CDT)
- electron density map is shifted? Gunnar Schroeder (Thu Jul 12 2007 - 19:14:01 CDT)
- Electron microscopy surface with VMD? Emmanuel Levy (Thu Jul 12 2007 - 16:37:18 CDT)
- error - with unknown atom type +CA shyamala (Thu Jul 12 2007 - 13:02:04 CDT)
- frame number input in tcl and direct mol graph display update pascal.baillod_at_epfl.ch (Thu Jul 12 2007 - 09:35:45 CDT)
- exporting xyz file Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:38:58 CDT)
- shifting of the origin Bhaskar Jyoti Borah (Tue Jul 10 2007 - 23:49:15 CDT)
- Re: shifting of the origin Axel Kohlmeyer (Wed Jul 11 2007 - 09:22:41 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Wed Jul 11 2007 - 11:24:15 CDT)
- Re: shifting of the origin Axel Kohlmeyer (Wed Jul 11 2007 - 10:49:47 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Wed Jul 11 2007 - 23:33:22 CDT)
- Re: shifting of the origin John Stone (Wed Jul 11 2007 - 23:56:48 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:07:36 CDT)
- Re: shifting of the origin Bhaskar Jyoti Borah (Wed Jul 11 2007 - 11:24:15 CDT)
- Re: shifting of the origin Axel Kohlmeyer (Wed Jul 11 2007 - 09:22:41 CDT)
- displaying velocity from dlpoly history Stern, Julie (Tue Jul 10 2007 - 14:52:37 CDT)
- atomselect sally cii (Tue Jul 10 2007 - 03:03:23 CDT)
- RE: some principles for building a topology file? Irene Newhouse (Mon Jul 09 2007 - 22:45:09 CDT)
- some principles for building a topology file? Irene Newhouse (Mon Jul 09 2007 - 15:27:01 CDT)
- Using multiple CPUS SeongJun Heo (Mon Jul 09 2007 - 14:20:14 CDT)
- need help Bhaskar Jyoti Borah (Mon Jul 09 2007 - 05:25:50 CDT)
- CAVE & Vmd Christian Wohlschlager (Fri Jul 06 2007 - 02:06:54 CDT)
- RMSD of different molecules hori koshii (Thu Jul 05 2007 - 20:50:56 CDT)
- command line dcd to trr? hori koshii (Thu Jul 05 2007 - 20:46:14 CDT)
- calculation limit of gofr? Philipp Schn (Thu Jul 05 2007 - 10:16:00 CDT)
- Video card query Ignacio Fernndez Galvn (Thu Jul 05 2007 - 02:34:12 CDT)
- Broken tube drawing method? Claw Isthelaw (Thu Jul 05 2007 - 00:17:37 CDT)
- VRPN, phantom and VMD... Dr. Luis Rosales Leon (Wed Jul 04 2007 - 17:12:38 CDT)
- vmd crashes on startup Arnab Mukherjee (Wed Jul 04 2007 - 16:11:36 CDT)
- How to display boundary crossing bonds? Zhimin Xiong (Tue Jul 03 2007 - 23:58:00 CDT)
- ACE and NH2 (Tue Jul 03 2007 - 16:37:43 CDT)
- developing plugins to vmd in python shourabh rawat (Tue Jul 03 2007 - 01:12:22 CDT)
- Display bond between fragment and protein residue Mackay Steffensen (Mon Jul 02 2007 - 12:24:47 CDT)
- VTF file Jakob Petersen (Sun Jul 01 2007 - 13:56:58 CDT)
- Fwd: atom serial number Francesco Pietra (Sun Jul 01 2007 - 02:59:07 CDT)
- atom serial number Francesco Pietra (Sun Jul 01 2007 - 02:33:20 CDT)
- RMSF calculation question: Parminder Mankoo (Sat Jun 30 2007 - 19:09:18 CDT)
- trouble saving the state of two proteins Charlotte J Siska (Fri Jun 29 2007 - 12:45:27 CDT)
- how to calculate hydrogen bond? lily jin (Fri Jun 29 2007 - 12:21:54 CDT)
- Hydrogen and Water Molecules. Yu Liu (Wed Jun 27 2007 - 11:13:40 CDT)
- Away until July 12, self-help encouraged! John Stone (Thu Jun 28 2007 - 17:22:36 CDT)
- vmd and amber Francesco Pietra (Thu Jun 28 2007 - 16:08:37 CDT)
- get charge lily jin (Thu Jun 28 2007 - 12:56:46 CDT)
- generate surface figure Zhenwei Lu (Thu Jun 28 2007 - 11:54:31 CDT)
- glycerol box amit dong (Thu Jun 28 2007 - 11:14:12 CDT)
- Amber patches for Auto PSF generator Bob Johnson (Wed Jun 27 2007 - 11:55:44 CDT)
- error while generating a tetramer using transformation matrix Ruchi Sachdeva (Wed Jun 27 2007 - 01:15:28 CDT)
- angle between protein domains: PARMINDER MANKOO (Tue Jun 26 2007 - 15:46:02 CDT)
- help on making stereo diagram Zhenwei Lu (Tue Jun 26 2007 - 15:25:59 CDT)
- parallel capabilities Jana Black (Tue Jun 26 2007 - 14:27:38 CDT)
- question about ligand volmap Rachel (Tue Jun 26 2007 - 10:56:34 CDT)
- redefining macros vs. update of selections Axel Kohlmeyer (Mon Jun 25 2007 - 19:28:53 CDT)
- ! Obtain degrees from Prestigious non-accredite dUniversities 1(484)993-7152 Marty (Sat Jun 23 2007 - 01:45:28 CDT)
- Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Fri Jun 22 2007 - 17:51:35 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model John Stone (Fri Jun 22 2007 - 17:51:59 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Fri Jun 22 2007 - 20:04:40 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Axel Kohlmeyer (Sat Jun 23 2007 - 09:23:20 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Sat Jun 23 2007 - 10:29:11 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model John Stone (Tue Jun 26 2007 - 15:19:17 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model Arneh Babakhani (Fri Jun 22 2007 - 20:04:40 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model John Stone (Fri Jun 22 2007 - 17:51:59 CDT)
- Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 13:10:06 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 13:24:30 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 13:50:59 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 13:52:21 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 14:26:12 CDT)
- Re: Loading up PDB files in absolute coordinates Brian Bennion (Fri Jun 22 2007 - 15:34:28 CDT)
- Re: Loading up PDB files in absolute coordinates Giovanni Bellesia (Fri Jun 22 2007 - 14:24:11 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 14:38:42 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 14:38:40 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 15:04:24 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 15:01:26 CDT)
- Re: Loading up PDB files in absolute coordinates Arneh Babakhani (Fri Jun 22 2007 - 13:50:59 CDT)
- Re: Loading up PDB files in absolute coordinates John Stone (Fri Jun 22 2007 - 13:24:30 CDT)
- Text/Labels on ray tracing external renderer Petrica GASCA (Fri Jun 22 2007 - 09:28:57 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Fri Jun 22 2007 - 13:03:41 CDT)
- Re: Text/Labels on ray tracing external renderer Axel Kohlmeyer (Fri Jun 22 2007 - 14:26:00 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Fri Jun 22 2007 - 15:35:12 CDT)
- Re: Text/Labels on ray tracing external renderer Petrica GASCA (Sat Jun 23 2007 - 06:06:55 CDT)
- Re: Text/Labels on ray tracing external renderer Jay Shore (Sat Jun 23 2007 - 09:31:40 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Tue Jun 26 2007 - 15:25:00 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Tue Jun 26 2007 - 15:06:53 CDT)
- Re: Text/Labels on ray tracing external renderer Ignacio Fernndez Galvn (Wed Jun 27 2007 - 02:07:23 CDT)
- Re: Text/Labels on ray tracing external renderer Axel Kohlmeyer (Fri Jun 22 2007 - 14:26:00 CDT)
- Re: Text/Labels on ray tracing external renderer John Stone (Fri Jun 22 2007 - 13:03:41 CDT)
- Rotate dx map Cesar Luis Avila (Thu Jun 21 2007 - 10:03:50 CDT)
- center scaling and rotation Tim Meyer (Thu Jun 21 2007 - 09:35:40 CDT)
- Changing Beta values for each frame of a trajectory.. Arun Krishnan (Wed Jun 20 2007 - 22:08:17 CDT)
- volmap commands Lutz Maibaum (Wed Jun 20 2007 - 20:35:15 CDT)
- Fw: namd-l-outgoing2@halifax.ks.uiuc.edu lily jin (Wed Jun 20 2007 - 15:25:56 CDT)
- Mail System Error - Returned Mail The Post Office (Wed Jun 20 2007 - 12:17:09 CDT)
- Re: atomselection Luis Rosales (Wed Jun 20 2007 - 10:14:56 CDT)
- atomselection Kevser Gmen Topal (Wed Jun 20 2007 - 02:27:50 CDT)
- Box dimensions Jennie Thomas (Tue Jun 19 2007 - 17:59:53 CDT)
- atomsel: writepdb failed for vmd 1.8.6 Margaret S. Cheung (Tue Jun 19 2007 - 16:16:24 CDT)
- adding residue at start or end Zhenwei Lu (Tue Jun 19 2007 - 10:58:30 CDT)
- VMD for PPC64 SLES9? Mike Hanby (Tue Jun 19 2007 - 10:19:26 CDT)
- Tracking bond length changes in a simulation Adilah Hussien (Tue Jun 19 2007 - 04:33:22 CDT)
- VMD 1.8.6 Not Responding! Vijaya Brahma (Sun Jun 17 2007 - 23:59:06 CDT)
- Re: VMD 1.8.6 Not Responding! Axel Kohlmeyer (Mon Jun 18 2007 - 09:49:47 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Mon Jun 18 2007 - 16:04:51 CDT)
- VMD 1.8.6 Not Responding! Vijaya Brahma (Wed Jun 20 2007 - 23:31:27 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Thu Jun 21 2007 - 00:28:07 CDT)
- Re: VMD 1.8.6 Not Responding! Axel Kohlmeyer (Thu Jun 21 2007 - 10:37:44 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Thu Jun 21 2007 - 10:45:07 CDT)
- Re: VMD 1.8.6 Not Responding! Vijaya Brahma (Thu Jun 21 2007 - 22:40:47 CDT)
- Re: VMD 1.8.6 Not Responding! John Stone (Thu Jun 21 2007 - 22:58:37 CDT)
- VMD 1.8.6 Not Responding! Vijaya Brahma (Wed Jun 20 2007 - 23:31:27 CDT)
- Solvate 1.2 problem option -ion luca.dallaglio2_at_studio.unibo.it (Thu Jun 14 2007 - 07:02:39 CDT)
- atom position update for reference atom list Philipp Schoen1 (Wed Jun 13 2007 - 08:28:30 CDT)
- superposition lily jin (Tue Jun 12 2007 - 12:05:20 CDT)
- PME plugin Cesar Luis Avila (Tue Jun 12 2007 - 11:18:47 CDT)
- PSFGEN:buiding an uncharged protein luca.dallaglio2_at_studio.unibo.it (Tue Jun 12 2007 - 02:55:14 CDT)
- Paratool Add/Edit Internal Coordinates window Francesco Pietra (Tue Jun 12 2007 - 00:29:05 CDT)
- Question about rendering across multiple frames Prashanth Athri (Mon Jun 11 2007 - 13:51:29 CDT)
- Re: Paratool Window Jan Saam (Mon Jun 11 2007 - 14:22:00 CDT)
- Re: Paratool Window L. Michel Espinoza-Fonseca (Mon Jun 11 2007 - 14:52:14 CDT)
- Paratool Reference (was Re: Paratool Window) Jan Saam (Fri Jun 15 2007 - 11:11:10 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Jacob Poehlsgaard (Tue Aug 21 2007 - 06:18:40 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Peter Freddolino (Tue Aug 21 2007 - 10:01:04 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Francesco Pietra (Tue Aug 21 2007 - 10:29:41 CDT)
- Re: Paratool Reference (was Re: Paratool Window) Jan Saam (Mon Aug 27 2007 - 03:56:34 CDT)
- Paratool Reference (was Re: Paratool Window) Jan Saam (Fri Jun 15 2007 - 11:11:10 CDT)
- Re: Paratool Window L. Michel Espinoza-Fonseca (Mon Jun 11 2007 - 14:52:14 CDT)
- script for atom collisions Kailee (Mon Jun 11 2007 - 12:10:30 CDT)
- Paratool Window Vivek Sharma (Mon Jun 11 2007 - 08:48:07 CDT)
- Nearest neighbor selection Richard Swenson (Mon Jun 11 2007 - 10:23:57 CDT)
- vmd visualization and CMAP run problem Moumita Maiti (Mon Jun 11 2007 - 00:52:23 CDT)
- use animatepdbs.tcl to include APBS potential maps Cesar Millan (Sat Jun 09 2007 - 22:48:02 CDT)
- rmsd calculation for RNA Moumita Maiti (Fri Jun 08 2007 - 11:48:58 CDT)
- Help with Tcl script Manali Mehendale (Fri Jun 08 2007 - 11:09:56 CDT)
- Simple TCL/Tk question Pavan Ghatty (Fri Jun 08 2007 - 11:04:10 CDT)
- problem when drawing a cylinder Zhimin Xiong (Fri Jun 08 2007 - 03:27:28 CDT)
- Python Module Harry Bullen (Thu Jun 07 2007 - 13:00:41 CDT)
- RENDER ISSUES Claire Zerafa (Thu Jun 07 2007 - 08:48:17 CDT)
- rendering problems Claire Zerafa (Thu Jun 07 2007 - 09:37:13 CDT)
- traj not visualized but pdb is visualized Lambert van Eijck (Thu Jun 07 2007 - 04:44:49 CDT)
- .xyz file, namelist index too large error Erkan Tuzel (Wed Jun 06 2007 - 19:39:48 CDT)
- how to visualize Charmm generated files ThuZar Lwin (Wed Jun 06 2007 - 16:38:54 CDT)
- release memory in TCL lily jin (Wed Jun 06 2007 - 14:44:13 CDT)
- changing certain dihedral angles while keeping rest of molecule fixed Himanshu Khandelia (Wed Jun 06 2007 - 04:37:01 CDT)
- Duplicate VMD-L emails... John Stone (Tue Jun 05 2007 - 13:11:26 CDT)
- Fwd: vmd installation Linux Debian i386 Francesco Pietra (Tue Jun 05 2007 - 12:55:05 CDT)
- Re: Fwd: vmd installation Linux Debian i386 John Stone (Tue Jun 05 2007 - 13:02:26 CDT)
- Re: Fwd: vmd installation Linux Debian i386 Francesco Pietra (Tue Jun 05 2007 - 17:47:06 CDT)
- Re: Fwd: vmd installation Linux Debian i386 Axel Kohlmeyer (Tue Jun 05 2007 - 17:43:49 CDT)
- Measuring hbonds between selections from different molecules Arneh Babakhani (Tue Jun 05 2007 - 20:13:15 CDT)
- Re: Measuring hbonds between selections from different molecules Axel Kohlmeyer (Tue Jun 05 2007 - 19:41:24 CDT)
- Re: Measuring hbonds between selections from different molecules Arneh Babakhani (Tue Jun 05 2007 - 20:57:11 CDT)
- Re: Measuring hbonds between selections from different molecules Axel Kohlmeyer (Tue Jun 05 2007 - 20:09:49 CDT)
- Re: Fwd: vmd installation Linux Debian i386 Francesco Pietra (Tue Jun 05 2007 - 17:47:06 CDT)
- Re: Fwd: vmd installation Linux Debian i386 John Stone (Tue Jun 05 2007 - 13:02:26 CDT)
- What is the influence of PBC on measure bond? Philipp Schoen1 (Tue Jun 05 2007 - 09:30:03 CDT)
- VMD-Main window doesn't load after change in .vmdrc Grant Schauer (Mon Jun 04 2007 - 20:22:55 CDT)
- list in TCL lily jin (Mon Jun 04 2007 - 18:47:16 CDT)
- labeling for movie title xiaoqin huang (Mon Jun 04 2007 - 13:21:54 CDT)
- removing water molecules Atila Iamarino (Mon Jun 04 2007 - 13:21:33 CDT)
- load state and alignments Stern, Julie (Mon Jun 04 2007 - 10:56:36 CDT)
- Distance measurement via measure bond Philipp Schoen1 (Mon Jun 04 2007 - 10:32:02 CDT)
- parameters file of POPC SMAHANE CHALABI (Mon Jun 04 2007 - 09:22:30 CDT)
- Installing VMD 1.8.6 Philipp Schoen1 (Mon Jun 04 2007 - 07:54:24 CDT)
- Atom names, RES-IDS...!!! Raul Araya (Fri Jun 01 2007 - 23:55:33 CDT)
- Re: CCL: show ruler in VMD John Stone (Fri Jun 01 2007 - 14:11:07 CDT)
- self-coeeficient diffusion nicolas.floquet_at_univ-reims.fr (Fri Jun 01 2007 - 07:41:27 CDT)
- Using VolMap tool for charge density visualization Bob Johnson (Fri Jun 01 2007 - 09:59:47 CDT)
- Order Parameter Script for changing bilayer normal Richard Swenson (Fri Jun 01 2007 - 09:21:07 CDT)
- Using regular expressions on tcl atomselection Cesar Luis Avila (Thu May 31 2007 - 17:45:32 CDT)
- Electron density profile Cesar Luis Avila (Thu May 31 2007 - 11:30:29 CDT)
- lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) Richard Swenson (Wed May 30 2007 - 14:15:13 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) Axel Kohlmeyer (Wed May 30 2007 - 14:14:08 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) Cesar Luis Avila (Wed Jun 06 2007 - 10:55:19 CDT)
- pqr files---- Raul Araya (Tue May 29 2007 - 16:46:49 CDT)
- overlay Alison Grinthal (Tue May 29 2007 - 15:58:18 CDT)
- Reading in a MOL2 file Mark Zottola (Tue May 29 2007 - 11:31:44 CDT)
- colomb map in volmap tool Raul Araya (Mon May 28 2007 - 17:03:10 CDT)
- overlay Alison Grinthal (Mon May 28 2007 - 06:45:38 CDT)
- ligand parametrization Karol Kaszuba (Mon May 28 2007 - 10:57:05 CDT)
- Problem with bondsrecalc Philippe Roche (Mon May 28 2007 - 11:29:47 CDT)
- Problem with bondsrecalc Philippe Roche (Mon May 28 2007 - 11:33:07 CDT)
- RE: Installation Error Involving TLC Claw Isthelaw (Sun May 27 2007 - 22:37:30 CDT)
- help on trajectory density map Kailee (Sun May 27 2007 - 12:54:12 CDT)
- tkconsole and intel macs Dan Gordon (Sun May 27 2007 - 20:32:11 CDT)
- Fwd: Linux installation issue Francesco Pietra (Sat May 26 2007 - 09:57:40 CDT)
- Fwd: Linux installation issue Francesco Pietra (Sat May 26 2007 - 09:47:51 CDT)
- Linux installation issue Francesco Pietra (Sat May 26 2007 - 09:38:53 CDT)
- problem with installing VMD on a LINUX cluster Yinglong Miao (Fri May 25 2007 - 16:59:11 CDT)
- Installation Error Involving TLC Jana Black (Fri May 25 2007 - 13:44:00 CDT)
- travelling... John Stone (Fri May 25 2007 - 11:00:52 CDT)
- selecting complete residues within perticular distance. naga raju (Fri May 25 2007 - 02:33:28 CDT)
- (no subject) Lechuga, Javier (Fri May 25 2007 - 08:10:27 CDT)
- regarding selecting complete residues within a distance naga raju (Fri May 25 2007 - 04:43:49 CDT)
- fortran/tcl Luca Bellucci (Fri May 25 2007 - 03:13:54 CDT)
- non-standard residue Stern, Julie (Thu May 24 2007 - 21:15:31 CDT)
- How to use remote GLSL rendering capabilities? Cesar Luis Avila (Thu May 24 2007 - 18:02:43 CDT)
- Re: How to use remote GLSL rendering capabilities? Axel Kohlmeyer (Thu May 24 2007 - 17:38:36 CDT)
- Re: How to use remote GLSL rendering capabilities? Cesar Luis Avila (Sun May 27 2007 - 16:05:03 CDT)
- Re: How to use remote GLSL rendering capabilities? Peter Freddolino (Sun May 27 2007 - 18:10:48 CDT)
- Re: How to use remote GLSL rendering capabilities? Axel Kohlmeyer (Mon May 28 2007 - 10:51:07 CDT)
- Re: How to use remote GLSL rendering capabilities? John Stone (Mon May 28 2007 - 15:24:36 CDT)
- Re: How to use remote GLSL rendering capabilities? John Stone (Mon May 28 2007 - 15:32:26 CDT)
- Re: How to use remote GLSL rendering capabilities? Cesar Luis Avila (Sun May 27 2007 - 16:05:03 CDT)
- Re: How to use remote GLSL rendering capabilities? Axel Kohlmeyer (Thu May 24 2007 - 17:38:36 CDT)
- VMD installation Francesco Pietra (Thu May 24 2007 - 16:04:29 CDT)
- Adjusting perspective Cesar Luis Avila (Thu May 24 2007 - 11:33:40 CDT)
- Displaying the periodic box ... Stphane Tletcha (Thu May 24 2007 - 09:54:25 CDT)
- paratool/gaff Francesco Pietra (Thu May 24 2007 - 01:14:37 CDT)
- questions about developing a plugin Yinglong Miao (Wed May 23 2007 - 15:21:11 CDT)
- Automatic loading of mol2 files FyD (Wed May 23 2007 - 10:42:17 CDT)
- About paratool Francesco Pietra (Wed May 23 2007 - 09:38:40 CDT)
- calculating b-factors from trajectories gozorows_at_uci.edu (Tue May 22 2007 - 17:53:27 CDT)
- Customized radii Manali Joshi (Tue May 22 2007 - 13:04:27 CDT)
- RE: Automatically shutting down VMD after NAMD terminates IMD connection Claw Isthelaw (Sun May 20 2007 - 16:20:30 CDT)
- vmd movies in powerpoint Richard Casey (Sun May 20 2007 - 06:01:02 CDT)
- Automatically shutting down VMD after NAMD terminates IMD connection Claw Isthelaw (Sat May 19 2007 - 13:23:42 CDT)
- volmap command and masks Marc Baaden (Fri May 18 2007 - 17:01:20 CDT)
- Re: custom db in Multiseq John Eargle (Fri May 18 2007 - 11:32:51 CDT)
- help on writing a tcl script Kailee (Fri May 18 2007 - 10:57:58 CDT)
- Need help about hbond and saltbridge s104fendy (Fri May 18 2007 - 03:07:05 CDT)
- the error of the plugin QMTool in read gaussian output file mashaojienuaa (Fri May 18 2007 - 01:08:09 CDT)
- custom db in Multiseq Armen Nalian (Thu May 17 2007 - 18:48:01 CDT)
- Questions on VMD Mark Zottola (Thu May 17 2007 - 16:44:10 CDT)
- inserting protein into membrane baxy (Thu May 17 2007 - 08:39:58 CDT)
- unreadable prmtop's and reference memory error? Stern, Julie (Thu May 17 2007 - 11:47:04 CDT)
- (no subject) Lechuga, Javier (Thu May 17 2007 - 09:40:07 CDT)
- Tachyon renderer zsinkala_at_mtsu.edu (Wed May 16 2007 - 23:03:14 CDT)
- how to make a movie using Principal Component Analysis gadde suneetha (Wed May 16 2007 - 20:02:48 CDT)
- NOC 3.0 is released chenmengen (Wed May 16 2007 - 14:01:37 CDT)
- question about making movies Kailee (Wed May 16 2007 - 11:49:50 CDT)
- absolute C.O.M motion calculation script: help hl332_at_drexel.edu (Wed May 16 2007 - 11:06:45 CDT)
- How to add two parallel confinement wall Zhimin Xiong (Wed May 16 2007 - 04:27:04 CDT)
- help for modification into a small tcl script hl332_at_drexel.edu (Tue May 15 2007 - 10:32:17 CDT)
- how to use measure hbonds to calculate occupancy of all hbonds in simulation? lnubiofox (Tue May 15 2007 - 09:21:33 CDT)
- a gas box SMAHANE CHALABI (Tue May 15 2007 - 06:10:05 CDT)
- RNA Adrian Roitberg (Mon May 14 2007 - 14:25:03 CDT)
- AutoIMD on vmd 1.8.6 IRIX.... Luis Rosales (Fri May 11 2007 - 19:48:16 CDT)
- how to caculate the hydrogen bonds occupancy? lnubiofox (Sun May 13 2007 - 09:38:37 CDT)
- An remark on PoV output Szymon Zietkiewicz (Sat May 12 2007 - 06:45:01 CDT)
- Fast routines for distance evaluations using PBC. Arturas Ziemys (Fri May 11 2007 - 11:52:49 CDT)
- show atom number in xyz file Petrica GASCA (Fri May 11 2007 - 06:49:10 CDT)
- files for air SMAHANE CHALABI (Fri May 11 2007 - 04:01:27 CDT)
- RMSD fitting for molecules adsorbed to surfaces Bob Johnson (Thu May 10 2007 - 16:12:09 CDT)
- a air box SMAHANE CHALABI (Thu May 10 2007 - 08:38:15 CDT)
- Consider fluctuating volume for density Philipp Schoen1 (Thu May 10 2007 - 05:16:57 CDT)
- Fwd: vmd first installation Francesco Pietra (Wed May 09 2007 - 16:59:08 CDT)
- Problem loading pdb file on VMD ren (Wed May 09 2007 - 02:10:48 CDT)
- Re: Problem loading pdb file on VMD John Stone (Wed May 09 2007 - 02:48:42 CDT)
- Re: Problem loading pdb file on VMD Axel Kohlmeyer (Wed May 09 2007 - 07:37:56 CDT)
- pbcunwrap, DL_POLY v 3 Joshua D. Moore (Wed May 09 2007 - 01:37:14 CDT)
- vmd first installation Francesco Pietra (Wed May 09 2007 - 01:24:48 CDT)
- drawing a membrane dimka (Tue May 08 2007 - 15:10:03 CDT)
- SASA measurements Michael S. Marlow (Tue May 08 2007 - 11:17:12 CDT)
- installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Mon May 07 2007 - 21:37:38 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Mon May 07 2007 - 21:44:39 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 12:12:33 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Tue May 08 2007 - 13:44:43 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 14:15:54 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Tue May 08 2007 - 14:20:52 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Dan Wright (Tue May 08 2007 - 16:58:43 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 22:38:01 CDT)
- RE: installing MSMS on OS X 10.4.9 (Intel) Morizono, Hiroki (Wed May 09 2007 - 08:56:52 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Thu May 10 2007 - 20:38:00 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) Ralph Jimenez (Tue May 08 2007 - 12:12:33 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) John Stone (Mon May 07 2007 - 21:44:39 CDT)
- autoPSF with a POPC membrane Stephen M. Dutz (Mon May 07 2007 - 19:37:25 CDT)
- color by frame? andrea spitaleri (Mon May 07 2007 - 04:58:40 CDT)
- problem using bigdcd.tcl script does not run beyond the first frame no error reported Himanshu Khandelia (Mon May 07 2007 - 04:42:10 CDT)
- How to align a protein normal to lipid bilayer nur avneet (Sun May 06 2007 - 23:29:45 CDT)
- measure hbonds lanhua (Fri May 04 2007 - 20:57:35 CDT)
- nonbond interaction energy lanhua (Fri May 04 2007 - 12:14:55 CDT)
- How to align a protein normal to lipid bilayer nur avneet (Fri May 04 2007 - 06:33:55 CDT)
- Contribution of selected atoms to surface Brian Smith (Fri May 04 2007 - 03:12:57 CDT)
- Reading additional atom properties Lutz Maibaum (Thu May 03 2007 - 20:07:12 CDT)
- Re: loop in loop - found it lily jin (Thu May 03 2007 - 18:49:47 CDT)
- loop in loop lily jin (Thu May 03 2007 - 18:41:04 CDT)
- (no subject) lanhua (Thu May 03 2007 - 16:30:24 CDT)
- vmd-1:how to merge two proteins (receptor & ligand) kong.winter (Thu May 03 2007 - 16:06:20 CDT)
- measure Hbond lily jin (Thu May 03 2007 - 14:06:19 CDT)
- dumb movie maker question Nichols A. Romero (Thu May 03 2007 - 10:32:26 CDT)
- a water box containing only the absorbent heads of SMAHANE CHALABI (Thu May 03 2007 - 03:11:45 CDT)
- rms fitting problem Myunggi Yi (Wed May 02 2007 - 16:34:04 CDT)
- vmd 1.8.6 on MacOS X, with python support, anyone? Jan Rychter (Mon Apr 30 2007 - 05:39:33 CDT)
- Visualization and reading problems Marcelo Puiatti (Fri Apr 27 2007 - 18:12:44 CDT)
- increase light under depth cueing Vlad Cojocaru (Sat Apr 28 2007 - 17:46:59 CDT)
- Problem with periodic condition Jianhui Tian (Fri Apr 27 2007 - 13:33:26 CDT)
- Re: Problem with periodic condition Axel Kohlmeyer (Fri Apr 27 2007 - 14:42:33 CDT)
- Re: Problem with periodic condition Olaf Lenz (Sat Apr 28 2007 - 13:27:51 CDT)
- Dynamic 'Determine file type' list in main menu !?! Rob (Fri Apr 27 2007 - 01:14:37 CDT)
- vmd problem: session ended Hugh Ferrel Bowen (Thu Apr 26 2007 - 08:46:01 CDT)
- DOWSER: child process exited abnormally Robert Selwyne (Thu Apr 26 2007 - 06:57:03 CDT)
- Fixed number of solvatation water Andrea Cristiani (Wed Apr 25 2007 - 04:56:41 CDT)
- GLSL rendering problems (??) Nichols A. Romero (Tue Apr 24 2007 - 15:40:57 CDT)
- Re: GLSL rendering problems (??) John Stone (Tue Apr 24 2007 - 15:52:30 CDT)
- Re: GLSL rendering problems (??) Nichols A. Romero (Tue Apr 24 2007 - 16:00:20 CDT)
- Re: GLSL rendering problems (??) John Stone (Tue Apr 24 2007 - 16:19:59 CDT)
- Re: GLSL rendering problems (??) Mario Valle (Tue Apr 24 2007 - 22:44:29 CDT)
- Re: GLSL rendering problems (??) John Stone (Wed Apr 25 2007 - 09:53:54 CDT)
- Re: GLSL rendering problems (??) Dow Hurst DPHURST (Mon May 14 2007 - 10:39:14 CDT)
- Re: GLSL rendering problems (??) Axel Kohlmeyer (Mon May 14 2007 - 11:04:34 CDT)
- Re: GLSL rendering problems (??) John Stone (Mon May 14 2007 - 12:42:08 CDT)
- Re: GLSL rendering problems (??) Axel Kohlmeyer (Mon May 14 2007 - 13:03:49 CDT)
- Re: GLSL rendering problems (??) Nichols A. Romero (Tue Apr 24 2007 - 16:00:20 CDT)
- Re: GLSL rendering problems (??) John Stone (Tue Apr 24 2007 - 15:52:30 CDT)
- One Year written repl1ca w4tches warranty Kari Maher (Tue Apr 24 2007 - 15:10:17 CDT)
- Re: Your Val1um 0rder #63504 Donnie Skinner (Tue Apr 24 2007 - 13:01:46 CDT)
- H-bonds amit dong (Tue Apr 24 2007 - 10:58:13 CDT)
- how to reset a timed out connection Amarda Shehu (Tue Apr 24 2007 - 09:23:44 CDT)
- selecting atoms Nichols A. Romero (Tue Apr 24 2007 - 09:55:36 CDT)
- Variable number of atoms in xyz file Ignacio Fernndez Galvn (Tue Apr 24 2007 - 02:58:20 CDT)
- Cheap 3D Glasses Gustavo Seabra (Mon Apr 23 2007 - 18:07:07 CDT)
- Your Pharm4cy 0rder #2299650 Mary Rudd (Mon Apr 23 2007 - 17:50:29 CDT)
- W4tches from simple to luxurious at Prest1ge Repl1cas Dominique Compton (Mon Apr 23 2007 - 17:51:51 CDT)
- About openning a file to write in callback function preeda (Mon Apr 23 2007 - 12:07:59 CDT)
- tcl code atomselect problem in analysis Jianhui Tian (Mon Apr 23 2007 - 09:24:48 CDT)
- Your Pharm4cy 0rder #3747312 Andres Bynum (Sat Apr 21 2007 - 19:50:21 CDT)
- Misunderstanding about SASA Patrick Redmill (Sat Apr 21 2007 - 10:14:19 CDT)
- Reliable w4tches for everyone at Prest1ge Repl1cas Michele Garrett (Sat Apr 21 2007 - 10:20:56 CDT)
- Your V1agra 0rder #18671 Willie Bray (Sat Apr 21 2007 - 02:54:52 CDT)
- Famous repl1ca w4tches r0lex Cartier Bvlgari Shari Chin (Fri Apr 20 2007 - 23:08:24 CDT)
- Re: Your Val1um 0rder #6578980 Owen Lindsay (Fri Apr 20 2007 - 22:11:49 CDT)
- How to visualize phi maps calculated with delphi V. 4 Cesar Luis Avila (Fri Apr 20 2007 - 18:36:48 CDT)
- process and plot matrix data Vlad Cojocaru (Fri Apr 20 2007 - 04:28:12 CDT)
- Announcement: QM/MM Workshop Axel Kohlmeyer (Thu Apr 19 2007 - 09:14:50 CDT)
- tcl variable withing variable name Vlad Cojocaru (Thu Apr 19 2007 - 07:58:27 CDT)
- How to get the whole H2O molecule in a domain? Philipp Schoen1 (Wed Apr 18 2007 - 11:55:03 CDT)
- secondary_struct script alexandra.marques_at_fc.up.pt (Wed Apr 18 2007 - 11:28:43 CDT)
- vmd can't start up after being installed in linux lanhua (Tue Apr 17 2007 - 23:22:13 CDT)
- Re: vmd can't start up after being installed in linux John Stone (Tue Apr 17 2007 - 22:50:39 CDT)
- Re: vmd can't start up after being installed in linux Axel Kohlmeyer (Tue Apr 17 2007 - 22:01:27 CDT)
- Re: vmd can't start up after being installed in linux Cesar Luis Avila (Wed Apr 18 2007 - 10:54:40 CDT)
- hexagonal box dimka (Tue Apr 17 2007 - 12:11:09 CDT)
- assignment of "measure contacts" output to tcl variables Vlad Cojocaru (Tue Apr 17 2007 - 07:25:19 CDT)
- RE: "which files to make a spatial grid?" => Bug for list command? Philipp Schoen1 (Tue Apr 17 2007 - 07:03:46 CDT)
- Strange characters using writemol2 (vmd 1.8.5) Cesar Luis Avila (Mon Apr 16 2007 - 18:32:28 CDT)
- Tinker trajectory file Esther Brugger (Mon Apr 16 2007 - 16:47:00 CDT)
- Re: Tinker trajectory file John Stone (Mon Apr 16 2007 - 18:27:52 CDT)
- How can i obtain a force and trajectory data of a PHANTOM in IMD simulation preeda (Tue Apr 17 2007 - 09:44:30 CDT)
- Re: How can i obtain a force and trajectory data of a PHANTOM in IMD simulation John Stone (Wed Apr 18 2007 - 16:50:16 CDT)
- Re: How can i obtain a force and trajectory data of a PHANTOM in IMD simulation John Stone (Wed Apr 18 2007 - 16:51:47 CDT)
- About using trace preeda (Fri Apr 20 2007 - 10:04:09 CDT)
- Re: About using trace John Stone (Fri Apr 20 2007 - 12:02:14 CDT)
- How can i obtain a force and trajectory data of a PHANTOM in IMD simulation preeda (Tue Apr 17 2007 - 09:44:30 CDT)
- Re: Tinker trajectory file John Stone (Mon Apr 16 2007 - 18:27:52 CDT)
- how to solvate a molecule with cubic periodic boundary box? Margaret S. Cheung (Mon Apr 16 2007 - 15:46:48 CDT)
- Saving mol2 file Atila Iamarino (Mon Apr 16 2007 - 12:36:00 CDT)
- hbond questions Miguel Ferreira (Mon Apr 16 2007 - 10:10:03 CDT)
- VMD for Windows 64bits Lechuga, Javier (Mon Apr 16 2007 - 10:11:34 CDT)
- which files to make a spatial grid? Philipp Schoen1 (Mon Apr 16 2007 - 07:39:44 CDT)
- writing coordinates of a selection only Myunggi Yi (Sun Apr 15 2007 - 20:51:19 CDT)
- Release of the R.E.D.-III tools FyD (Sun Apr 15 2007 - 05:22:35 CDT)
- Where is the memory leakage? Guo Zhi (Sun Apr 15 2007 - 00:54:48 CDT)
- winvmd error during calculation lanhua (Fri Apr 13 2007 - 23:17:54 CDT)
- GLSL rendering in VMD 1.8.6 Luis Rosales (Fri Apr 13 2007 - 20:18:23 CDT)
- .xyz to .dcd using catdcd Ekta Khurana (Fri Apr 13 2007 - 16:08:51 CDT)
- Re: .xyz to .dcd using catdcd Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
- Re: .xyz to .dcd using catdcd Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
- Re: .xyz to .dcd using catdcd Axel Kohlmeyer (Mon Apr 16 2007 - 19:51:35 CDT)
- Re: .xyz to .dcd using catdcd Peter Freddolino (Mon Apr 16 2007 - 21:31:32 CDT)
- Re: .xyz to .dcd using catdcd Ekta Khurana (Mon Apr 16 2007 - 21:31:42 CDT)
- Re: .xyz to .dcd using catdcd John Stone (Tue Apr 17 2007 - 12:48:12 CDT)
- Re: .xyz to .dcd using catdcd John Stone (Fri Apr 20 2007 - 15:36:36 CDT)
- Re: .xyz to .dcd using catdcd Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
- Re: .xyz to .dcd using catdcd Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
- contact map (over all frames) amit dong (Fri Apr 13 2007 - 15:53:24 CDT)
- compile a plugin source code dbg (Fri Apr 13 2007 - 06:29:59 CDT)
- VMD installation dbg (Fri Apr 13 2007 - 01:09:54 CDT)
- sasa Myunggi Yi (Wed Apr 11 2007 - 21:42:25 CDT)
- mismatch between phi and pdb files Michael Widmann (Tue Apr 10 2007 - 03:07:52 CDT)
- If I want to modify measure.C, what should I do? lanhua (Mon Apr 09 2007 - 15:59:18 CDT)
- I'm sorry ... please ignore the junk !! Vlad Cojocaru (Mon Apr 09 2007 - 05:50:54 CDT)
- Vlad has Tagged you! :) Vlad Cojocaru (Mon Apr 09 2007 - 05:06:39 CDT)
- VMD 1.8.6 GLSL problem daniel aguayo (Mon Apr 09 2007 - 01:08:04 CDT)
- 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL) Charles Cleveland (Sun Apr 08 2007 - 08:05:00 CDT)
- Announce: VMD 1.8.6 Released! John Stone (Sun Apr 08 2007 - 00:51:52 CDT)
- GLSL rendering problems Nichols A. Romero (Thu Apr 05 2007 - 14:41:22 CDT)
- Problem with Reading Binary ccp4 File Generated by CHARMM rossi_at_york.cuny.edu (Thu Apr 05 2007 - 11:32:02 CDT)
- how to connect chains using psfgen Philipp Schoen1 (Wed Apr 04 2007 - 09:49:10 CDT)
- using Grace instead of Multiplot Vlad Cojocaru (Wed Apr 04 2007 - 05:04:36 CDT)
- surface max_density error Jim Fonseca (Tue Apr 03 2007 - 11:25:49 CDT)
- problem using NAMD trajectory in charmm 32-bit, 64-bit etc. (yes, I posted this on charmm lists too) namd vmd (Tue Apr 03 2007 - 07:49:45 CDT)
- VMD for Win32 API based PC CAVE Michal Husak (Mon Apr 02 2007 - 08:00:34 CDT)
- How do I overlap that specific nucletide between a protein and RNA? zhangh1_at_umbc.edu (Sat Mar 31 2007 - 08:43:07 CDT)
- problem during movie making gadde suneetha (Fri Mar 30 2007 - 07:44:48 CDT)
- Can anyone help me out with this script Jianhui Tian (Fri Mar 30 2007 - 14:49:45 CDT)
- 'SURF' representation problem hl332_at_drexel.edu (Thu Mar 29 2007 - 16:04:02 CDT)
- python pro.align() Per Jr. Greisen (Thu Mar 29 2007 - 12:27:21 CDT)
- dcd header information missing Nichols A. Romero (Thu Mar 29 2007 - 10:21:31 CDT)
- Moving volume data with molecule Avell Diroll (Thu Mar 29 2007 - 10:05:40 CDT)
- how to view the dynamics in power point presentation gadde suneetha (Thu Mar 29 2007 - 06:25:29 CDT)
- assigning variable names using a for loop namd vmd (Thu Mar 29 2007 - 03:21:45 CDT)
- doubts in movie making using vmd. gadde suneetha (Wed Mar 28 2007 - 19:05:05 CDT)
- New VMD 1.8.6b15 installer for Windows XP x64... John Stone (Wed Mar 28 2007 - 18:17:29 CDT)
- [vmd-l] Graduate assistanship in Bioinformatics at NCSA Gloria Rendon (Wed Mar 28 2007 - 17:45:25 CDT)
- ion 'channel axis' Adrian Kaats (Wed Mar 28 2007 - 15:55:17 CDT)
- Re: GAMESS plugin bus error Ralph Jimenez (Wed Mar 28 2007 - 15:11:17 CDT)
- How to make a movie in VMD using principle component analysis gadde suneetha (Wed Mar 28 2007 - 07:42:56 CDT)
- write trajectory of selected atoms namd vmd (Wed Mar 28 2007 - 09:51:28 CDT)
- Plugin Issue James Keener (Wed Mar 28 2007 - 09:45:18 CDT)
- FW: rdf using gui syma (Tue Mar 27 2007 - 16:49:06 CDT)
- rdf using gui syma (Tue Mar 27 2007 - 16:18:57 CDT)
- dynamic bonding Zheng Hu (Tue Mar 27 2007 - 14:21:02 CDT)
- representation selection funnies Fred Moore (Tue Mar 27 2007 - 14:06:21 CDT)
- problem creating psf lucie huynh (Tue Mar 27 2007 - 09:54:08 CDT)
- hbond calculation alexandra.marques_at_fc.up.pt (Mon Mar 26 2007 - 15:49:19 CDT)
- PBCTools Plugin Zheng Hu (Mon Mar 26 2007 - 15:14:50 CDT)
- mol load and mol addfile Jianhui Tian (Mon Mar 26 2007 - 15:43:20 CDT)
- hbond analysis jacopo.sgrignani_at_unifi.it (Sat Mar 24 2007 - 11:03:24 CDT)
- can't read pdb file Mary Lowe (Fri Mar 23 2007 - 21:40:18 CDT)
- windows version of VMD Zheng Hu (Fri Mar 23 2007 - 16:35:29 CDT)
- Re: windows version of VMD John Stone (Fri Mar 23 2007 - 17:17:31 CDT)
- Re: windows version of VMD Zheng Hu (Sat Mar 24 2007 - 16:39:43 CDT)
- Re: windows version of VMD Zheng Hu (Sat Mar 24 2007 - 17:03:27 CDT)
- Re: windows version of VMD Zheng Hu (Sun Mar 25 2007 - 15:19:48 CDT)
- Re: windows version of VMD Zheng Hu (Mon Apr 09 2007 - 00:20:11 CDT)
- hbond jacopo.sgrignani_at_unifi.it (Fri Mar 23 2007 - 13:29:57 CDT)
- script to visualize NMR constrains? Marcela Madrid (Fri Mar 23 2007 - 13:45:46 CDT)
- coloring names Fred Moore (Fri Mar 23 2007 - 13:24:37 CDT)
- Draw a circle Abi Ghanem josephine (Fri Mar 23 2007 - 09:47:12 CDT)
- visualizing NMR constrains Marcela Madrid (Thu Mar 22 2007 - 17:14:37 CDT)
- colors Luc Moulinier (Thu Mar 22 2007 - 03:55:26 CDT)
- How to superimpose trajectories Kailee (Wed Mar 21 2007 - 09:14:33 CDT)
- Replica exchange molecular dynamics (REMD) Arindam Ganguly (Tue Mar 20 2007 - 21:22:15 CDT)
- graphic update Myunggi Yi (Tue Mar 20 2007 - 20:09:06 CDT)
- Any way to output contact map data Guo Zhi (Tue Mar 20 2007 - 09:18:03 CDT)
- calculating distance between center of geometry/mass of methyl hydrogens for all residue pairs Zu Thur Yew (Mon Mar 19 2007 - 18:48:41 CDT)
- Scripting problem with h-bond listing Sanjeev (Sun Mar 18 2007 - 01:30:53 CDT)
- question about gofr lanhua (Sat Mar 17 2007 - 14:30:31 CDT)
- Question about overlaying structures Kara Di Giorgio (Thu Mar 15 2007 - 21:16:26 CDT)
- OmpF biological unit Adrian Kaats (Thu Mar 15 2007 - 18:58:17 CDT)
- export Ramachandran datas Jianhui Tian (Thu Mar 15 2007 - 16:16:21 CDT)
- Scripts to unwrap PBC from REMD trajectory Bob Johnson (Thu Mar 15 2007 - 16:08:50 CDT)
- AutoPSF lily jin (Thu Mar 15 2007 - 15:23:32 CDT)
- Average structure Per Jr. Greisen (Thu Mar 15 2007 - 14:14:20 CDT)
- manually creating frames for VMD yalini.pathy_at_yale.edu (Wed Mar 14 2007 - 17:11:58 CDT)
- Measuring specific distances over a trajectory Patrick Wintrode (Wed Mar 14 2007 - 16:06:30 CDT)
- molecule orientation in saved state Subramanian Vaitheeswaran (Wed Mar 14 2007 - 12:21:53 CDT)
- how to set atom index Guo Zhi (Wed Mar 14 2007 - 10:33:57 CDT)
- VMD 1.8.6b binaries for win32? Jacob Poehlsgaard (Wed Mar 14 2007 - 10:14:45 CDT)
- Calculate End-End distance for DCD Jianhui Tian (Tue Mar 13 2007 - 15:17:00 CDT)
- Problems running APBS Per Jr. Greisen (Tue Mar 13 2007 - 13:32:04 CDT)
- NAMD Energy - Hexagonal Cell Alessandro Cembran (Mon Mar 12 2007 - 18:10:14 CDT)
- ed and vmd Nadine Utz (Abt. Koslowski) (Mon Mar 12 2007 - 12:58:49 CDT)
- vmd on core 2 duo matteus.lindgren_at_chem.umu.se (Mon Mar 12 2007 - 03:26:30 CDT)
- How to specify the orientation of the molecule zhangh1_at_umbc.edu (Sun Mar 11 2007 - 19:39:45 CDT)
- Movie Maker: How to specify use of trajectory in the movie script file Shatadal Ghosh (Sat Mar 10 2007 - 01:43:42 CST)
- VolumeSlices Pawel Wielgus (Fri Mar 09 2007 - 09:27:17 CST)
- VMD_orient pkmukher (Thu Mar 08 2007 - 21:36:49 CST)
- Memory problems with Multiseq Marcelo Puiatti (Thu Mar 08 2007 - 17:21:27 CST)
- VMD Rex Palmer (Thu Mar 08 2007 - 05:29:14 CST)
- OpenGL problem Rene Salmon (Tue Mar 06 2007 - 16:03:19 CST)
- DCD for windows lily jin (Tue Mar 06 2007 - 15:25:40 CST)
- Locating channel using hole Subramanian Vaitheeswaran (Tue Mar 06 2007 - 12:11:23 CST)
- unusual residue type problem.. hl332_at_drexel.edu (Tue Mar 06 2007 - 11:38:08 CST)
- Re: Where to find cholesterol ester in PDB format Peter Engelhardt (Tue Mar 06 2007 - 03:56:26 CST)
- Configuration file Rita Cassia (Tue Mar 06 2007 - 06:37:47 CST)
- BPS Meeting @ Baltimore bora erdemli (Mon Mar 05 2007 - 19:16:40 CST)
- read the pdb file using VMD Esther Brugger (Mon Mar 05 2007 - 17:00:36 CST)
- vmd core dump on IRIX Rene Salmon (Mon Mar 05 2007 - 16:16:01 CST)
- reading charmm files Grazia Daminelli (Mon Mar 05 2007 - 07:48:22 CST)
- New Molecule (or Load Data) resets viewpoint of Display. Why? Rob (Sun Mar 04 2007 - 21:27:14 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? Axel Kohlmeyer (Mon Mar 05 2007 - 05:24:25 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? John Stone (Mon Mar 05 2007 - 17:06:29 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? Rob (Tue Mar 06 2007 - 03:28:56 CST)
- E-D stereo glasses aneamtu_at_iasi.mednet.ro (Sat Mar 03 2007 - 04:44:51 CST)
- Compiling VMD from source on SDSC Datastar (AIX 5.2) Philip Blood (Fri Mar 02 2007 - 17:09:25 CST)
- vmd/gaussian cubes Adrian Roitberg (Fri Mar 02 2007 - 10:11:08 CST)
- Calculating dipole moment of protein Per Jr. Greisen (Fri Mar 02 2007 - 06:26:23 CST)
- Updating atomselection from frame to frame Jawahar Neelankatan (Fri Mar 02 2007 - 06:19:38 CST)
- Colouring Atoms according to the centro-symmetric parameter Epiphaniou, Nicholas (Thu Mar 01 2007 - 12:59:00 CST)
- Transform pdb files in psf files using VMD Ins Sousa (Thu Mar 01 2007 - 04:35:44 CST)
- convert tcl to python Per Jr. Greisen (Thu Mar 01 2007 - 05:54:18 CST)
- calculation of free energy between lipid membrane and protein Shulin Zhuang (Thu Mar 01 2007 - 00:17:25 CST)
- Delete Volume Maps via Script Bob Johnson (Wed Feb 28 2007 - 18:36:43 CST)
- morph christopher (Wed Feb 28 2007 - 16:18:48 CST)
- count variable number of molecules Alexandr Isayev (Wed Feb 28 2007 - 14:23:11 CST)
- multiple dx frames Jim Fonseca (Wed Feb 28 2007 - 13:49:12 CST)
- Calculate VolMap for every frame by a script Bob Johnson (Tue Feb 27 2007 - 16:21:12 CST)
- VMD open GL Display problem Aye zlem Sezerman (Tue Feb 27 2007 - 06:52:19 CST)
- Cave and usr keys defined in tcl Christian Wohlschlager (Tue Feb 27 2007 - 05:46:38 CST)
- rmsf calculations bora erdemli (Tue Feb 27 2007 - 01:42:25 CST)
- bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 16:24:53 CST)
- Re: bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
- Re: Re: bug report in VMD 1.8.5 John Stone (Mon Feb 26 2007 - 16:41:14 CST)
- Re: Re: bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 17:03:54 CST)
- Re: Re: bug report in VMD 1.8.5 John Stone (Tue Feb 27 2007 - 12:48:46 CST)
- Re: Re: bug report in VMD 1.8.5 Nichols A. Romero (Wed Feb 28 2007 - 14:10:47 CST)
- Re: Re: bug report in VMD 1.8.5 Leonardo Trabuco (Wed Feb 28 2007 - 14:15:11 CST)
- Re: Re: bug report in VMD 1.8.5 Axel Kohlmeyer (Mon Feb 26 2007 - 17:26:38 CST)
- Re: Re: bug report in VMD 1.8.5 John Stone (Mon Feb 26 2007 - 16:41:14 CST)
- Re: bug report in VMD 1.8.5 Jerome Henin (Mon Feb 26 2007 - 19:32:29 CST)
- Re: bug report in VMD 1.8.5 Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
- lipid headgroup analysis syma (Mon Feb 26 2007 - 04:38:35 CST)
- Tracing VMD variables Olaf Lenz (Mon Feb 26 2007 - 08:10:03 CST)
- IC from paratool Grazia Daminelli (Mon Feb 26 2007 - 02:35:27 CST)
- Question about RDF of VMD Jianhui Tian (Sat Feb 24 2007 - 20:33:13 CST)
- "get {x y z}" returns single value Ivan Degtyarenko (Fri Feb 23 2007 - 10:18:16 CST)
- transparent background in vmd Omololu (Fri Feb 23 2007 - 10:11:24 CST)
- Number of Frames in VMD Rita Cassia (Fri Feb 23 2007 - 07:48:39 CST)
- Same pdb file, different image Hai-Jun Su (Thu Feb 22 2007 - 22:11:27 CST)
- cube file: coordinates rotated Yaser Khan (Wed Feb 21 2007 - 20:05:32 CST)
- (no subject) Stephen M. Dutz (Wed Feb 21 2007 - 15:40:45 CST)
- Nanopore simulation subhasish chatterjee (Tue Feb 20 2007 - 21:58:54 CST)
- superimposing two structures and getting the coordinates bertrand russell (Tue Feb 20 2007 - 11:52:03 CST)
- Isosurface rendering Avell Diroll (Tue Feb 20 2007 - 08:52:35 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 10:44:36 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 12:53:21 CST)
- Re: Isosurface rendering Avell Diroll (Wed Feb 21 2007 - 06:42:05 CST)
- Re: Isosurface rendering Axel Kohlmeyer (Wed Feb 21 2007 - 09:44:21 CST)
- Re: Isosurface rendering John Stone (Wed Feb 21 2007 - 11:45:22 CST)
- Re: Isosurface rendering Axel Kohlmeyer (Wed Feb 21 2007 - 11:54:12 CST)
- Re: Isosurface rendering John Stone (Wed Feb 21 2007 - 17:21:10 CST)
- Re: Isosurface rendering Avell Diroll (Thu Feb 22 2007 - 08:11:28 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 12:53:21 CST)
- Re: Isosurface rendering John Stone (Tue Feb 20 2007 - 10:44:36 CST)
- Fwd: generating COORDINATE FILES PREETA DATTA (Tue Feb 20 2007 - 07:22:53 CST)
- generating PREETA DATTA (Tue Feb 20 2007 - 07:19:13 CST)
- a question about paratool Javaria Ahmad (Tue Feb 20 2007 - 06:35:52 CST)
- syntax error in com file Javaria Ahmad (Tue Feb 20 2007 - 06:15:49 CST)
- PC-gamess Per Jr. Greisen (Tue Feb 20 2007 - 05:02:45 CST)
- Anyone have cyclic structures I can use for testing? John Stone (Tue Feb 20 2007 - 01:28:29 CST)
- Files closing/Memory issues in VMD Alexander Balaeff (Mon Feb 19 2007 - 14:03:54 CST)
- Research Position Openings Mike Smith (Sun Feb 18 2007 - 03:45:19 CST)
- hbonds problem alexandra.marques_at_fc.up.pt (Sat Feb 17 2007 - 17:52:45 CST)
- Strange MOL2 export Mario Valle (Sat Feb 17 2007 - 12:21:42 CST)
- Small annoyance with tachion Mario Valle (Sat Feb 17 2007 - 11:34:46 CST)
- stereo view Osmany Guirola Cruz (Fri Feb 16 2007 - 14:06:43 CST)
- building bilayer with DOPC or other lipids PREETA DATTA (Fri Feb 16 2007 - 04:29:41 CST)
- Measure atoms volume on VMD Cesar Luis Avila (Thu Feb 15 2007 - 15:27:53 CST)
- 3D grid data to 2D contour? Ivan Degtyarenko (Thu Feb 15 2007 - 15:04:05 CST)
- problem with autopsf L. Michel Espinoza-Fonseca (Thu Feb 15 2007 - 07:44:18 CST)
- TCl question: preventing STDOUT namd vmd (Thu Feb 15 2007 - 05:59:50 CST)
- aligning one molecule s.schweizer_at_dkfz-heidelberg.de (Wed Feb 14 2007 - 08:47:41 CST)
- Bug in the tcl script greddy1_at_umd.edu (Tue Feb 13 2007 - 13:18:58 CST)
- GL window offset problem christopher (Mon Feb 12 2007 - 15:09:55 CST)
- average structure dimka (Mon Feb 12 2007 - 13:42:33 CST)
- aligning molecules with different number of atoms namd vmd (Mon Feb 12 2007 - 11:53:49 CST)
- ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 10:58:32 CST)
- Re: ionize (big, big, big system!) Peter Freddolino (Mon Feb 12 2007 - 11:07:50 CST)
- Re: ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 11:19:57 CST)
- Re: namd-l: Re: ionize (big, big, big system!) Alessandro Cembran (Mon Feb 12 2007 - 11:37:20 CST)
- Re: namd-l: Re: ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 17:49:25 CST)
- Re: namd-l: Re: ionize (big, big, big system!) Alessandro Cembran (Mon Feb 12 2007 - 18:57:05 CST)
- Re: ionize (big, big, big system!) L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 11:19:57 CST)
- Re: ionize (big, big, big system!) Peter Freddolino (Mon Feb 12 2007 - 11:07:50 CST)
- atomselection: number of residues namd vmd (Sun Feb 11 2007 - 06:35:17 CST)
- hot keys & save state Yaser Khan (Sun Feb 11 2007 - 03:01:40 CST)
- VMD-1.8.5: GLSL & NVidia troubles + fixed previous Spaceball problem Pietro Amodeo (Sat Feb 10 2007 - 05:59:42 CST)
- Bug in the Tcl script greddy1_at_umd.edu (Fri Feb 09 2007 - 19:51:24 CST)
- load in multiple files once Hai-Jun Su (Fri Feb 09 2007 - 15:53:18 CST)
- question about rotations Adrian Roitberg (Fri Feb 09 2007 - 08:33:34 CST)
- Changing the display window size in a script Ignacio Fernndez Galvn (Fri Feb 09 2007 - 02:37:02 CST)
- How to save the snapshot of my protein? bertrand russell (Fri Feb 09 2007 - 01:24:54 CST)
- Assigning Color Codes for stress/force in .xyz trajectory files Adrian Koh (Fri Feb 09 2007 - 00:08:26 CST)
- Making interactive 3-D PDF files using VMD 1.8.6 beta 7 John Stone (Thu Feb 08 2007 - 18:11:53 CST)
- H-Bond in VMD Esther Brugger (Thu Feb 08 2007 - 10:48:38 CST)
- viewpoint Levin, Andrew Michael (Thu Feb 08 2007 - 09:17:48 CST)
- viewpoint Levin, Andrew Michael (Thu Feb 08 2007 - 09:19:16 CST)
- viewpoint Levin, Andrew Michael (Thu Feb 08 2007 - 09:18:01 CST)
- Saving work in VMD--this seems ridiculously difficult! wolfinbm_at_uci.edu (Thu Feb 08 2007 - 16:09:52 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! L. Michel Espinoza-Fonseca (Thu Feb 08 2007 - 17:13:52 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! John Stone (Thu Feb 08 2007 - 18:34:34 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! Cesar Luis Avila (Thu Feb 08 2007 - 20:53:30 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! Axel Kohlmeyer (Fri Feb 09 2007 - 10:52:01 CST)
- Saving work in VMD--this seems ridiculously difficult! wolfinbm_at_uci.edu (Thu Feb 08 2007 - 16:09:52 CST)
- surface area emra Heshmati (Wed Feb 07 2007 - 22:40:56 CST)
- stride failed Tsu-Fan Cheng (Wed Feb 07 2007 - 15:23:08 CST)
- file "top_all22_prot.inp" Hai-Jun Su (Tue Feb 06 2007 - 20:26:53 CST)
- H-Bond display in VMD Esther Brugger (Tue Feb 06 2007 - 12:41:47 CST)
- splitting segments namd vmd (Tue Feb 06 2007 - 11:06:15 CST)
- Re: about CHARMM electrostatic potential ivana adamovic (Mon Feb 05 2007 - 14:44:51 CST)
- indented atomselect variables namd vmd (Mon Feb 05 2007 - 14:30:48 CST)
- too large an area/lipid in POPE bilayers using membrane plugin Himanshu Khandelia (Mon Feb 05 2007 - 11:50:04 CST)
- rendering time bars or other vmd added graphics with povray Vlad Cojocaru (Mon Feb 05 2007 - 10:58:48 CST)
- about CHARMM electrostaic potential ivana adamovic (Mon Feb 05 2007 - 09:46:47 CST)
- volume slices Jim Fonseca (Sun Feb 04 2007 - 14:32:11 CST)
- cartoon problems (encore) christopher (Sat Feb 03 2007 - 15:29:56 CST)
- Units for Measure Dipole Kim Gunnerson (Fri Feb 02 2007 - 16:51:16 CST)
- Atomselect on several molecules Veronika Brazdova (Fri Feb 02 2007 - 10:04:22 CST)
- Using "membrane package" with different lipid molecules Lechuga, Javier (Fri Feb 02 2007 - 09:18:06 CST)
- creating gif animation with povray Vlad Cojocaru (Fri Feb 02 2007 - 04:09:12 CST)
- VMD performance on Vista Christoph Weber (Thu Feb 01 2007 - 16:23:58 CST)
- sending arguments to tcl _at_huji.ac.il (Thu Feb 01 2007 - 13:39:20 CST)
- addition on CHARMM electrostatic pot. ivana adamovic (Thu Feb 01 2007 - 13:42:08 CST)
- CHARMM electrostatic potential ivana adamovic (Thu Feb 01 2007 - 13:17:21 CST)
- CHARMM electrostatic potential ivana adamovic (Thu Feb 01 2007 - 08:28:20 CST)