VMD-L Mailing List

11773 messages sorted by: [ author ] [ date ] [ subject ] [ attachment ]
About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Sat May 10 2008 - 18:16:34 CDT

• Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sat May 10 2008 - 07:36:43 CDT)
  • Re: Recompile VMD with larger index types John Stone (Sat May 10 2008 - 10:24:43 CDT)
    • Re: Recompile VMD with larger index types Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
      • NewCartoons / STRIDE problem Samuel Coulbourn Flores 花山 (Sat May 10 2008 - 18:16:21 CDT)
• Charge State Confusion MIke S (Thu May 08 2008 - 22:17:33 CDT)
  • Re: Charge State Confusion John Stone (Thu May 08 2008 - 22:55:36 CDT)
    • Re: Charge State Confusion MIke S (Fri May 09 2008 - 00:45:39 CDT)
• about measure dihedral angle cong chen (Thu May 08 2008 - 20:53:08 CDT)
• measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 15:52:47 CDT)
  • Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 16:59:55 CDT)
    • Re: measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
      • Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 23:08:22 CDT)
      • Re: measure sasa gives different results on different platforms Jufang Shan (Thu May 08 2008 - 11:26:38 CDT)
      • Re: measure sasa gives different results on different platforms John Stone (Thu May 08 2008 - 11:39:07 CDT)
• bigdcd v2.0 testers needed... Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
• running vmd as pbs job zhenlong li (Tue May 06 2008 - 14:40:44 CDT)
  • Re: running vmd as pbs job John Stone (Fri May 09 2008 - 02:29:22 CDT)
    • Re: running vmd as pbs job zhenlong li (Fri May 09 2008 - 08:34:41 CDT)
• Writepdb with Solvation Box Alejandro Ortega (Tue May 06 2008 - 12:50:23 CDT)
  • Re: Writepdb with Solvation Box Axel Kohlmeyer (Tue May 06 2008 - 13:25:34 CDT)
• NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled Ghalib Bello (Mon May 05 2008 - 23:02:45 CDT)
  • Re: namd-l: NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled Peter Freddolino (Tue May 06 2008 - 00:37:54 CDT)
• question related to rmsd snoze pa (Mon May 05 2008 - 15:03:07 CDT)
  • Re: namd-l: question related to rmsd JC Gumbart (Mon May 05 2008 - 16:19:47 CDT)
• Vmd too slow on Suse10.x cgji (Mon May 05 2008 - 08:20:47 CDT)
  • Re: Vmd too slow on Suse10.x Olaf Lenz (Mon May 05 2008 - 09:01:51 CDT)
  • Re: Vmd too slow on Suse10.x John Stone (Mon May 05 2008 - 09:42:31 CDT)
• The discreet replica store Greta Bush (Mon May 05 2008 - 01:28:30 CDT)
• about writepdb cong chen (Mon May 05 2008 - 00:08:53 CDT)
  • RE: about writepdb JC Gumbart (Mon May 05 2008 - 00:18:00 CDT)
• Get one of these awesome replicas Rolando Carlson (Sun May 04 2008 - 12:10:27 CDT)
• Replica watches make great gifts Edwina Grove (Sun May 04 2008 - 01:24:11 CDT)
• The affordable watch alternative Ariel Mitchell (Fri May 02 2008 - 20:35:12 CDT)
• a common list problem Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
  • Re: a common list problem John Stone (Fri May 02 2008 - 10:39:04 CDT)
• Get one of these awesome replicas Melanie Mcmahon (Fri May 02 2008 - 01:05:03 CDT)
• Rendering electrostatic surface potentials using Tachyon Jason Winget (Thu May 01 2008 - 15:39:31 CDT)
  • Re: Rendering electrostatic surface potentials using Tachyon John Stone (Thu May 01 2008 - 21:56:13 CDT)
• One of a kind replicas Richard Stone (Thu May 01 2008 - 11:18:31 CDT)
• Watches made to impress Clinton Sylvester (Thu May 01 2008 - 10:40:03 CDT)
• Measuring fit exclusively in 1 plane Benjamin Hall (Thu May 01 2008 - 04:59:04 CDT)
  • Re: Measuring fit exclusively in 1 plane John Stone (Thu May 01 2008 - 21:54:14 CDT)
• Why get an original watch? Leticia Larkin (Wed Apr 30 2008 - 20:14:01 CDT)
• Impressive Glashutte timepieces! Lorena Shipley (Wed Apr 30 2008 - 08:35:35 CDT)
• Spring quality watches offer Bertie Earl (Tue Apr 29 2008 - 19:30:10 CDT)
• creating psf from pgn S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
  • Re: creating psf from pgn John Stone (Tue Apr 29 2008 - 16:09:24 CDT)
• Beginner with cyclic peptide Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
  • Re: Beginner with cyclic peptide Peter Freddolino (Tue Apr 29 2008 - 11:44:04 CDT)
• Rolex replica is a ultimate gift Jimmie Corona (Tue Apr 29 2008 - 08:25:38 CDT)
• clarification to "problem using pbc wrap" politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
• problem using pbc wrap politr_at_huji.ac.il (Tue Apr 29 2008 - 05:52:09 CDT)
• (no subject) politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
  • Re: problem using pbc wrap Axel Kohlmeyer (Tue Apr 29 2008 - 06:49:20 CDT)
• Spring quality watches offer Bryce Vang (Mon Apr 28 2008 - 12:56:22 CDT)
• Hot replica watches from 2008 Rudy Puckett (Sun Apr 27 2008 - 14:53:15 CDT)
• Re: namd-l: How to play molecule trajectory with VMD? Regina Politi (Sun Apr 27 2008 - 07:15:22 CDT)
• Replica watch is a perfect gift Christian Courtney (Sun Apr 27 2008 - 04:18:34 CDT)
• Replica watch is a perfect gift Murray Dyer (Sat Apr 26 2008 - 17:18:11 CDT)
• Can not enter text in VMD plugin window Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
  • Re: Can not enter text in VMD plugin window Axel Kohlmeyer (Fri Apr 25 2008 - 21:52:12 CDT)
  • Re: Can not enter text in VMD plugin window John Stone (Fri Apr 25 2008 - 21:53:05 CDT)
    • Re: Can not enter text in VMD plugin window Dong Xu (Sat Apr 26 2008 - 00:10:04 CDT)
      • Re: Can not enter text in VMD plugin window John Stone (Sat Apr 26 2008 - 00:25:15 CDT)
      • Re: Can not enter text in VMD plugin window Dong Xu (Mon Apr 28 2008 - 13:04:52 CDT)
      • Re: Can not enter text in VMD plugin window John Stone (Mon Apr 28 2008 - 13:25:30 CDT)
• Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 15:12:19 CDT)
• Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 10:19:52 CDT)
• You can save 80% Arturo Fernandez (Fri Apr 25 2008 - 05:58:21 CDT)
• Get one of these awesome replicas Jerry Kiser (Thu Apr 24 2008 - 18:45:18 CDT)
• problem with "within" command of VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 08:22:23 CDT)
  • Re: problem with "within" command of VMD Axel Kohlmeyer (Thu Apr 24 2008 - 08:43:19 CDT)
• viewing pca output Bala subramanian (Thu Apr 24 2008 - 08:09:43 CDT)
  • Re: viewing pca output John Stone (Thu May 01 2008 - 22:38:31 CDT)
    • Re: viewing pca output Bala subramanian (Fri May 02 2008 - 06:16:00 CDT)
      • Re: viewing pca output John Stone (Fri May 02 2008 - 16:36:51 CDT)
• Inexpensive Louis Vuitton bags Buford Granger (Thu Apr 24 2008 - 09:03:05 CDT)
• resolution screen in Linux andrea spitaleri (Thu Apr 24 2008 - 07:33:24 CDT)
  • Re: resolution screen in Linux Axel Kohlmeyer (Thu Apr 24 2008 - 08:15:59 CDT)
  • Re: resolution screen in Linux John Stone (Thu Apr 24 2008 - 08:46:50 CDT)
    • Re: resolution screen in Linux andrea spitaleri (Mon Apr 28 2008 - 02:54:15 CDT)
• how to identify DNA-protein interaction interface BERGY (Thu Apr 24 2008 - 05:42:53 CDT)
  • Re: how to identify DNA-protein interaction interface Thomas C. Bishop (Thu Apr 24 2008 - 09:40:50 CDT)
• problem while running VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 03:31:22 CDT)
• problem while running VMD Regina Politi (Thu Apr 24 2008 - 03:30:19 CDT)
  • Re: problem while running VMD John Stone (Thu Apr 24 2008 - 09:20:17 CDT)
• One of a kind replicas Erin Ziegler (Wed Apr 23 2008 - 21:53:24 CDT)
• Rendering Labels with Tachyon Anthony Ivetac (Wed Apr 23 2008 - 18:18:33 CDT)
  • Re: Rendering Labels with Tachyon John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
    • Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
      • Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 14:45:02 CDT)
      • Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 17:43:08 CDT)
      • Re: Rendering Labels with Tachyon Leonardo Trabuco (Thu Apr 24 2008 - 18:13:06 CDT)
      • Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 17:29:10 CDT)
• Get your watch now Helena Slater (Wed Apr 23 2008 - 12:17:13 CDT)
• measure distance politr_at_huji.ac.il (Wed Apr 23 2008 - 09:02:41 CDT)
  • Re: measure distance Axel Kohlmeyer (Wed Apr 23 2008 - 09:04:00 CDT)
  • Re: measure distance Jian Zou (Wed Apr 23 2008 - 09:45:58 CDT)
• memorry problem politr_at_huji.ac.il (Wed Apr 23 2008 - 06:48:53 CDT)
  • Re: memorry problem Axel Kohlmeyer (Wed Apr 23 2008 - 06:58:42 CDT)
    • Re: memorry problem Axel Kohlmeyer (Fri May 02 2008 - 15:04:02 CDT)
• bug in the g(r) evaluation? cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
  • Re: bug in the g(r) evaluation? Axel Kohlmeyer (Tue Apr 22 2008 - 10:10:35 CDT)
    • Re: bug in the g(r) evaluation? cipitaua_at_gmail.com (Tue Apr 22 2008 - 11:06:14 CDT)
      • Re: bug in the g(r) evaluation? Axel Kohlmeyer (Tue Apr 22 2008 - 14:32:07 CDT)
      • Re: bug in the g(r) evaluation? cipitaua_at_gmail.com (Wed Apr 23 2008 - 07:50:12 CDT)
• alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction? maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
• One of a kind replicas Jane Mayberry (Mon Apr 21 2008 - 07:16:11 CDT)
• Tag Heuer replicas better than originals Errol Lusk (Sun Apr 20 2008 - 18:30:56 CDT)
• Tag Heuer replicas better than originals Corine Brady (Sun Apr 20 2008 - 07:33:41 CDT)
• Tag Heuer replicas better than originals Mona Gomes (Sat Apr 19 2008 - 17:17:44 CDT)
• warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 09:09:32 CDT)
  • Re: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 09:21:04 CDT)
    • RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 13:34:22 CDT)
    • Re: warnings during plugin build John Stone (Sat Apr 19 2008 - 14:29:46 CDT)
  • Re: warnings during plugin build John Stone (Sat Apr 19 2008 - 14:46:06 CDT)
    • RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
      • RE: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 18:40:41 CDT)
      • RE: warnings during plugin build Cojocaru,Vlad (Sun Apr 20 2008 - 03:51:17 CDT)
      • RE: warnings during plugin build Cojocaru,Vlad (Sun Apr 20 2008 - 12:37:39 CDT)
      • RE: warnings during plugin build Axel Kohlmeyer (Sun Apr 20 2008 - 13:33:29 CDT)
      • RE: warnings during plugin build Cojocaru,Vlad (Mon Apr 21 2008 - 18:35:21 CDT)
      • RE: warnings during plugin build Axel Kohlmeyer (Mon Apr 21 2008 - 18:45:50 CDT)
      • Re: warnings during plugin build John Stone (Mon Apr 21 2008 - 19:50:11 CDT)
      • Re: warnings during plugin build Vlad Cojocaru (Tue Apr 22 2008 - 03:39:43 CDT)
      • Re: warnings during plugin build Axel Kohlmeyer (Tue Apr 22 2008 - 05:39:59 CDT)
• Take a look at the latest replica watches Lillie Lyons (Sat Apr 19 2008 - 07:00:53 CDT)
• Spring quality watches offer Weldon Sylvester (Fri Apr 18 2008 - 18:29:29 CDT)
• RMSD between two structures without the same number of atoms Aurelie.DeLuca_at_sanofi-aventis.com (Fri Apr 18 2008 - 08:08:39 CDT)
  • Re: RMSD between two structures without the same number of atoms Axel Kohlmeyer (Fri Apr 18 2008 - 09:20:29 CDT)
• You can save 80% Annabelle Posey (Thu Apr 17 2008 - 17:58:17 CDT)
• PPMTOMPEG Quality Anthony Ivetac (Thu Apr 17 2008 - 14:40:15 CDT)
  • Re: PPMTOMPEG Quality John Stone (Thu Apr 17 2008 - 16:38:16 CDT)
  • Re: PPMTOMPEG Quality Axel Kohlmeyer (Thu Apr 17 2008 - 16:23:34 CDT)
• Compiled version for MacOSX with non-standard options Delalande (Thu Apr 17 2008 - 08:37:14 CDT)
  • Re: Compiled version for MacOSX with non-standard options John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
    • Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
      • Re: Compiled version for MacOSX with non-standard options John Stone (Fri Apr 18 2008 - 12:55:49 CDT)
      • Re: Compiled version for MacOSX with non-standard options Marc Baaden (Fri Apr 18 2008 - 14:21:30 CDT)
      • Re: Compiled version for MacOSX with non-standard options John Stone (Wed Apr 23 2008 - 23:45:05 CDT)
• Replica watch is a perfect gift Deanna Fleming (Thu Apr 17 2008 - 05:25:56 CDT)
• measure hbonds between protein and water - problem with periodic boundary conditions Ana Vila Verde (Thu Apr 17 2008 - 02:54:08 CDT)
  • Re: measure hbonds between protein and water - problem with periodic boundary conditions Olaf Lenz (Thu Apr 17 2008 - 04:32:34 CDT)
    • Re: measure hbonds between protein and water - problem with periodic boundary conditions Axel Kohlmeyer (Thu Apr 17 2008 - 04:52:29 CDT)
      • Re: measure hbonds between protein and water - problem with periodic boundary conditions Olaf Lenz (Thu Apr 17 2008 - 05:19:52 CDT)
      • Re: measure hbonds between protein and water - problem with periodic boundary conditions Ana Vila Verde (Thu Apr 17 2008 - 05:54:50 CDT)
• atomselect cong chen (Wed Apr 16 2008 - 19:58:18 CDT)
  • Re: atomselect Jian Zou (Thu Apr 17 2008 - 09:06:48 CDT)
  • Re: atomselect Axel Kohlmeyer (Thu Apr 17 2008 - 11:07:27 CDT)
• Trajectory title Alessandro Cembran (Wed Apr 16 2008 - 07:53:47 CDT)
  • Re: Trajectory title Axel Kohlmeyer (Wed Apr 16 2008 - 11:06:05 CDT)
• You and a Rolex watch Tisha Engle (Wed Apr 16 2008 - 05:16:24 CDT)
• Timer in VMD Lili Peng (Tue Apr 15 2008 - 16:59:28 CDT)
  • Re: Timer in VMD Axel Kohlmeyer (Tue Apr 15 2008 - 18:58:46 CDT)
    • Re: Timer in VMD Lili Peng (Tue Apr 15 2008 - 21:52:22 CDT)
• You and a Rolex watch Althea Lake (Tue Apr 15 2008 - 17:12:00 CDT)
• Example tutorial snoze pa (Mon Apr 14 2008 - 18:38:03 CDT)
• catDCD Raul Araya (Mon Apr 14 2008 - 12:01:41 CDT)
  • RE: catDCD Richard Swenson (Mon Apr 14 2008 - 13:28:19 CDT)
  • Re: catDCD Axel Kohlmeyer (Mon Apr 14 2008 - 12:08:34 CDT)
• Spring quality watches offer Grace Clay (Mon Apr 14 2008 - 11:47:27 CDT)
• topology files L/D form Jorgen Simonsen (Mon Apr 14 2008 - 04:50:08 CDT)
  • Re: topology files L/D form Peter Freddolino (Mon Apr 14 2008 - 10:26:40 CDT)
    • Re: topology files L/D form Jorgen Simonsen (Mon Apr 14 2008 - 12:55:11 CDT)
      • Re: topology files L/D form Peter Freddolino (Mon Apr 14 2008 - 13:13:10 CDT)
• 15% off on two watches Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
• compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 12:24:52 CDT)
  • Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
    • RE: compilation with python 2.5 and file permissions from the CVS repository Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
      • RE: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Sun Apr 13 2008 - 15:00:12 CDT)
      • Re: compilation with python 2.5 and file permissions from the CVS repository John Stone (Sun Apr 13 2008 - 15:29:57 CDT)
      • Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 03:26:35 CDT)
      • Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 05:16:25 CDT)
      • Re: compilation with python 2.5 and file permissions from the CVS repository Axel Kohlmeyer (Mon Apr 14 2008 - 05:16:19 CDT)
      • Re: compilation with python 2.5 and file permissions from the CVS repository Vlad Cojocaru (Mon Apr 14 2008 - 05:43:00 CDT)
      • Re: compilation with python 2.5 and file permissions from the CVS repository John Stone (Mon Apr 14 2008 - 10:26:18 CDT)
• Inexpensive Louis Vuitton bags Royce Rosa (Sat Apr 12 2008 - 18:57:58 CDT)
• change residue name and write a trajectory file L. Michel Espinoza-Fonseca (Thu Apr 10 2008 - 17:02:13 CDT)
  • Re: change residue name and write a trajectory file Axel Kohlmeyer (Thu Apr 10 2008 - 18:19:12 CDT)
• Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 15:15:36 CDT)
  • Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Thu Apr 10 2008 - 17:05:18 CDT)
    • RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Thu Apr 10 2008 - 21:17:08 CDT)
      • RE: Using namdenergy in batch mode to compute dihedral energies Irene Newhouse (Sun Apr 13 2008 - 11:47:03 CDT)
      • Re: Using namdenergy in batch mode to compute dihedral energies Ben Chern (Sun Apr 13 2008 - 20:49:26 CDT)
      • Re: Using namdenergy in batch mode to compute dihedral energies Peter Freddolino (Mon Apr 14 2008 - 10:24:53 CDT)
• Join tens of thousands of LUCKY winners today........ Mel Weston (Thu Apr 10 2008 - 05:48:03 CDT)
• Play at the world's leading online casino..... Bobbie Horton (Thu Apr 10 2008 - 01:28:24 CDT)
• The safest and most secure Online casino in the world....... Marian Clifton (Wed Apr 09 2008 - 18:55:11 CDT)
• Visualization in 3-D using NVIDIA quaddro Himanshu Khandelia (Wed Apr 09 2008 - 05:27:18 CDT)
  • Re: Visualization in 3-D using NVIDIA quaddro John Stone (Wed Apr 09 2008 - 10:28:10 CDT)
• Play at the world's leading online casino..... Ned Roy (Wed Apr 09 2008 - 01:14:11 CDT)
• Displaying nearest images using PBCTools Subramanian Vaitheeswaran (Tue Apr 08 2008 - 15:49:03 CDT)
  • Re: Displaying nearest images using PBCTools Olaf Lenz (Wed Apr 09 2008 - 03:06:08 CDT)
• some questions about the RDF plugin Raul Araya (Mon Apr 07 2008 - 15:23:32 CDT)
  • Re: some questions about the RDF plugin Axel Kohlmeyer (Mon Apr 07 2008 - 15:32:29 CDT)
    • Re: some questions about the RDF plugin Axel Kohlmeyer (Mon Apr 07 2008 - 16:01:54 CDT)
• How to circumvent: FATAL ERROR: Periodic cell has become too small for original patch grid! Maxim Paliy (Mon Apr 07 2008 - 12:36:24 CDT)
• psfgen 999 waters resname X column Low Soo Mei (Mon Apr 07 2008 - 05:31:52 CDT)
  • Re: psfgen 999 waters resname X column John Stone (Mon Apr 07 2008 - 11:54:54 CDT)
    • Re: psfgen 999 waters resname X column Low Soo Mei (Mon Apr 07 2008 - 21:02:37 CDT)
• Insall Problem VMD Linux 1.8.6 Part II! Peter Hains (Sun Apr 06 2008 - 23:07:55 CDT)
  • Re: Insall Problem VMD Linux 1.8.6 Part II! John Stone (Sun Apr 06 2008 - 23:23:31 CDT)
    • Re: Insall Problem VMD Linux 1.8.6 Part II! Peter Freddolino (Sun Apr 06 2008 - 23:31:25 CDT)
  • Re: Insall Problem VMD Linux 1.8.6 Part II! Axel Kohlmeyer (Sun Apr 06 2008 - 23:50:58 CDT)
  • Re: Insall Problem VMD Linux 1.8.6 Part II! John Stone (Sun Apr 06 2008 - 23:48:11 CDT)
• Install problem VMD Linux 1.8.6 Peter Hains (Sun Apr 06 2008 - 19:19:15 CDT)
  • Re: Install problem VMD Linux 1.8.6 John Stone (Sun Apr 06 2008 - 20:15:31 CDT)
  • Re: Install problem VMD Linux 1.8.6 Axel Kohlmeyer (Sun Apr 06 2008 - 20:21:11 CDT)
• About Tcl command zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
  • Re: About Tcl command Axel Kohlmeyer (Sun Apr 06 2008 - 00:58:40 CDT)
    • Re: Re: About Tcl command zhjjvmd (Sun Apr 06 2008 - 01:17:54 CDT)
• How to read specific DCD frames directly in Fortran? Yinglong Miao (Sat Apr 05 2008 - 13:21:53 CDT)
  • Re: How to read specific DCD frames directly in Fortran? Peter Freddolino (Sat Apr 05 2008 - 13:38:39 CDT)
  • Re: How to read specific DCD frames directly in Fortran? John Stone (Sat Apr 05 2008 - 13:43:21 CDT)
  • Re: How to read specific DCD frames directly in Fortran? Axel Kohlmeyer (Sat Apr 05 2008 - 18:08:23 CDT)
    • Re: How to read specific DCD frames directly in Fortran? Leandro Martínez (Sun Apr 06 2008 - 02:25:45 CDT)
      • Re: How to read specific DCD frames directly in Fortran? Yinglong Miao (Sun Apr 06 2008 - 10:51:40 CDT)
• how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 16:27:04 CDT)
  • Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 16:36:05 CDT)
    • Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 04 2008 - 17:42:08 CDT)
      • Re: how to render higher resolution figures for publication? John Stone (Fri Apr 04 2008 - 17:59:52 CDT)
      • Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 25 2008 - 14:18:24 CDT)
      • Re: how to render higher resolution figures for publication? John Stone (Fri Apr 25 2008 - 16:07:06 CDT)
      • Re: how to render higher resolution figures for publication? Lixia Jin Day (Fri Apr 25 2008 - 17:09:34 CDT)
• Topology file Alejandro Ortega (Fri Apr 04 2008 - 11:24:14 CDT)
  • Re: Topology file Axel Kohlmeyer (Fri Apr 04 2008 - 11:52:27 CDT)
• 0ne of a kind repl1cas Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
• You can s4ve 80% Sherman Sherman (Wed Apr 02 2008 - 10:10:22 CDT)
• Cannot perform RMSD analysis Maria Sanchez Farran (Wed Apr 02 2008 - 07:49:55 CDT)
  • Re: Cannot perform RMSD analysis John Stone (Wed Apr 02 2008 - 23:53:41 CDT)
• April promo on w4tches Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
• render Dongsheng Zhang (Mon Mar 31 2008 - 15:51:35 CDT)
  • Re: render John Stone (Tue Apr 01 2008 - 14:14:12 CDT)
    • Re: render Dongsheng Zhang (Tue Apr 01 2008 - 14:22:17 CDT)
      • Re: render John Stone (Thu Apr 03 2008 - 00:24:30 CDT)
• using cvs under Windows XP Ben Chern (Mon Mar 31 2008 - 08:31:31 CDT)
  • Re: using cvs under Windows XP Axel Kohlmeyer (Mon Mar 31 2008 - 09:37:54 CDT)
    • Re: using cvs under Windows XP Ben Chern (Mon Mar 31 2008 - 10:21:11 CDT)
• Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 04:13:38 CDT)
  • Re: Compiling VMD under Windows XP John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
    • Re: Compiling VMD under Windows XP Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
      • Re: Compiling VMD under Windows XP Axel Kohlmeyer (Mon Mar 31 2008 - 21:47:02 CDT)
      • Re: Compiling VMD under Windows XP Ben Chern (Tue Apr 01 2008 - 01:33:34 CDT)
      • Re: Compiling VMD under Windows XP Axel Kohlmeyer (Tue Apr 01 2008 - 06:06:22 CDT)
      • Movie Maker skipping Samuel Coulbourn Flores (Tue Apr 01 2008 - 12:38:47 CDT)
      • Re: Movie Maker skipping John Stone (Tue Apr 01 2008 - 12:53:13 CDT)
      • Re: Movie Maker skipping Samuel Coulbourn Flores (Tue Apr 01 2008 - 13:25:08 CDT)
      • Re: Movie Maker skipping John Stone (Tue Apr 01 2008 - 13:37:18 CDT)
      • Re: Compiling VMD under Windows XP Ben Chern (Tue Apr 01 2008 - 20:26:36 CDT)
      • Re: Compiling VMD under Windows XP John Stone (Thu Apr 03 2008 - 00:13:12 CDT)
      • Re: Compiling VMD under Windows XP Ben Chern (Thu Apr 03 2008 - 07:14:22 CDT)
• porcupine plot SWAPNA (Mon Mar 31 2008 - 01:06:36 CDT)
  • Re: porcupine plot John Stone (Mon Mar 31 2008 - 01:22:18 CDT)
    • Re: porcupine plot Oliver Beckstein (Wed Apr 02 2008 - 16:46:40 CDT)
  • Re: porcupine plot Axel Kohlmeyer (Mon Mar 31 2008 - 04:01:53 CDT)
  • Re: porcupine plot Benjamin Hall (Wed Apr 02 2008 - 17:30:49 CDT)
    • Re: Re: porcupine plot John Stone (Wed Apr 02 2008 - 23:41:12 CDT)
      • Re: Re: porcupine plot Benjamin Hall (Thu Apr 03 2008 - 12:00:11 CDT)
• NAMDenergy: how to override a FATAL ERROR Neelanjana Sengupta (Sun Mar 30 2008 - 14:50:29 CDT)
  • Re: NAMDenergy: how to override a FATAL ERROR Peter Freddolino (Sun Mar 30 2008 - 15:02:58 CDT)
    • Re: NAMDenergy: how to override a FATAL ERROR Neelanjana Sengupta (Sun Mar 30 2008 - 15:51:45 CDT)
      • Re: NAMDenergy: how to override a FATAL ERROR Peter Freddolino (Sun Mar 30 2008 - 16:02:30 CDT)
    • Re: NAMDenergy: how to override a FATAL ERROR Peter Freddolino (Tue Apr 01 2008 - 10:55:05 CDT)
• Problems with PDB file format in VMD cong chen (Thu Mar 27 2008 - 18:55:38 CDT)
  • Re: Problems with PDB file format in VMD Axel Kohlmeyer (Thu Mar 27 2008 - 20:42:45 CDT)
• Tcl 8.5.x in upcoming versions of VMD... John Stone (Thu Mar 27 2008 - 17:19:47 CDT)
  • Re: Tcl 8.5.x in upcoming versions of VMD... Axel Kohlmeyer (Thu Mar 27 2008 - 17:32:20 CDT)
    • Re: Tcl 8.5.x in upcoming versions of VMD... John Stone (Thu Mar 27 2008 - 18:11:20 CDT)
      • Re: Tcl 8.5.x in upcoming versions of VMD... Axel Kohlmeyer (Thu Mar 27 2008 - 18:14:23 CDT)
• Test VMD with CUDA support for Linux and MacOS X 10.5.2... John Stone (Thu Mar 27 2008 - 17:13:15 CDT)
• Selection "within x of something" is not updated throughout DCD trajectory? Maxim Paliy (Thu Mar 27 2008 - 13:59:25 CDT)
  • Re: Selection "within x of something" is not updated throughout DCD trajectory? John Stone (Thu Mar 27 2008 - 14:04:35 CDT)
• How to see the original Origin (0,0,0, coordinate) of a system Utpal Sarkar (Thu Mar 27 2008 - 11:20:03 CDT)
  • Re: How to see the original Origin (0,0,0, coordinate) of a system Axel Kohlmeyer (Thu Mar 27 2008 - 11:57:58 CDT)
  • Re: How to see the original Origin (0,0,0, coordinate) of a system Adrian Kaats (Thu Mar 27 2008 - 15:56:52 CDT)
  • Re: How to see the original Origin (0,0,0, coordinate) of a system John Stone (Thu Mar 27 2008 - 16:51:44 CDT)
• Can VMD show the interactions between different structure part? Ben Chern (Wed Mar 26 2008 - 22:20:57 CDT)
  • Re: Can VMD show the interactions between different structure part? Axel Kohlmeyer (Wed Mar 26 2008 - 23:19:40 CDT)
    • Re: Can VMD show the interactions between different structure part? Ben Chern (Thu Mar 27 2008 - 06:35:56 CDT)
      • Re: Can VMD show the interactions between different structure part? Axel Kohlmeyer (Thu Mar 27 2008 - 06:43:41 CDT)
      • Re: Can VMD show the interactions between different structure part? Ben Chern (Thu Mar 27 2008 - 20:26:13 CDT)
• problem with pbc Matt Watkins (Wed Mar 26 2008 - 16:20:55 CDT)
  • Re: problem with pbc Axel Kohlmeyer (Wed Mar 26 2008 - 16:38:07 CDT)
    • Re: problem with pbc Matt Watkins (Wed Mar 26 2008 - 17:07:58 CDT)
      • Re: problem with pbc Olaf Lenz (Thu Mar 27 2008 - 02:30:00 CDT)
      • Re: problem with pbc Axel Kohlmeyer (Thu Mar 27 2008 - 06:06:17 CDT)
      • Re: problem with pbc Olaf Lenz (Thu Mar 27 2008 - 06:33:42 CDT)
      • Re: problem with pbc Axel Kohlmeyer (Thu Mar 27 2008 - 07:26:05 CDT)
• Can we get secondary structure from PDB files? Ben Chern (Wed Mar 26 2008 - 04:02:04 CDT)
  • Re: Can we get secondary structure from PDB files? Axel Kohlmeyer (Wed Mar 26 2008 - 06:15:42 CDT)
    • Re: Can we get secondary structure from PDB files? Ben Chern (Wed Mar 26 2008 - 20:44:00 CDT)
      • Re: Can we get secondary structure from PDB files? John Stone (Wed Mar 26 2008 - 21:26:46 CDT)
      • Re: Can we get secondary structure from PDB files? Ben Chern (Wed Mar 26 2008 - 22:12:12 CDT)
• time correlation function Krishnan, Marimuthu (Tue Mar 25 2008 - 22:44:40 CDT)
  • Re: time correlation function Axel Kohlmeyer (Tue Mar 25 2008 - 22:56:27 CDT)
  • Re: time correlation function David A. Case (Thu Mar 27 2008 - 16:35:11 CDT)
    • Re: time correlation function John Stone (Thu Mar 27 2008 - 17:08:08 CDT)
• Test cong chen (Tue Mar 25 2008 - 18:39:50 CDT)
  • Re: Test John Stone (Tue Mar 25 2008 - 21:59:05 CDT)
• VMD tutorial for working with solid crystals Minhaj (Tue Mar 25 2008 - 03:33:19 CDT)
  • Re: VMD tutorial for working with solid crystals Axel Kohlmeyer (Tue Mar 25 2008 - 13:38:06 CDT)
• script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 17:16:39 CDT)
  • Re: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
    • RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
      • RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 19:22:30 CDT)
      • RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 20:07:20 CDT)
      • RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 19:53:36 CDT)
      • RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Mon Mar 24 2008 - 20:19:06 CDT)
      • RE: script to read dcd frame-at-a-time & write a selection Axel Kohlmeyer (Mon Mar 24 2008 - 20:07:35 CDT)
      • RE: script to read dcd frame-at-a-time & write a selection Irene Newhouse (Tue Mar 25 2008 - 00:11:29 CDT)
• Loading a PDB file with different atom counts in models Adrian Kaats (Fri Mar 21 2008 - 09:19:35 CDT)
  • Re: Loading a PDB file with different atom counts in models John Stone (Mon Mar 24 2008 - 23:31:20 CDT)
    • Re: Loading a PDB file with different atom counts in models Adrian Kaats (Tue Mar 25 2008 - 07:41:38 CDT)
• atoms with changing colors Simone Melchionna (Thu Mar 20 2008 - 16:50:50 CDT)
  • Re: atoms with changing colors Axel Kohlmeyer (Thu Mar 20 2008 - 17:05:53 CDT)
  • Re: atoms with changing colors John Stone (Thu Mar 20 2008 - 17:03:47 CDT)
• atomselect protein Adrian Kaats (Thu Mar 20 2008 - 16:39:54 CDT)
  • Re: atomselect protein John Stone (Thu Mar 20 2008 - 16:48:27 CDT)
• old VMD post - RE: measuring distances in vmd tkon Simpson, Lisa M (Thu Mar 20 2008 - 12:38:36 CDT)
  • Re: old VMD post - RE: measuring distances in vmd tkon L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 13:35:33 CDT)
    • Re: old VMD post - RE: measuring distances in vmd tkon L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 13:46:21 CDT)
• GPU test machine Michael Di Domenico (Thu Mar 20 2008 - 11:04:59 CDT)
  • Re: GPU test machine John Stone (Thu Mar 20 2008 - 11:25:09 CDT)
    • Re: GPU test machine Michael Di Domenico (Thu Mar 20 2008 - 15:29:41 CDT)
      • Re: GPU test machine John Stone (Thu Mar 20 2008 - 15:34:52 CDT)
      • Re: GPU test machine Michael Di Domenico (Thu Mar 20 2008 - 18:42:50 CDT)
      • Re: GPU test machine John Stone (Thu Mar 20 2008 - 19:29:58 CDT)
      • Re: GPU test machine Michael Di Domenico (Fri Mar 21 2008 - 14:46:37 CDT)
• running ca-dist.tcl Simpson, Lisa M (Thu Mar 20 2008 - 08:57:47 CDT)
  • Re: running ca-dist.tcl L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 10:38:50 CDT)
• RMSD calc SENTHIL KUMAR (Thu Mar 20 2008 - 01:11:02 CDT)
  • Re: RMSD calc Axel Kohlmeyer (Thu Mar 20 2008 - 05:37:31 CDT)
• Build a VMD forum? Stanley, Yemin Shi (Wed Mar 19 2008 - 15:49:08 CDT)
  • Re: Build a VMD forum? Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
    • Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
      • Re: Calculating the Tilt Angle of a non-helical peptide Axel Kohlmeyer (Wed Mar 19 2008 - 21:07:06 CDT)
      • Re: Calculating the Tilt Angle of a non-helical peptide Arneh Babakhani (Wed Mar 19 2008 - 21:37:45 CDT)
      • Re: Calculating the Tilt Angle of a non-helical peptide Axel Kohlmeyer (Wed Mar 19 2008 - 21:52:58 CDT)
• Radial Density Jennifer Williams (Wed Mar 19 2008 - 11:12:56 CDT)
  • Re: Radial Density Axel Kohlmeyer (Wed Mar 19 2008 - 11:48:49 CDT)
• dipole Alessio Alexiadis (Wed Mar 19 2008 - 06:54:21 CDT)
  • Re: dipole Axel Kohlmeyer (Wed Mar 19 2008 - 07:32:17 CDT)
• Display bond breaking Stanley, Yemin Shi (Tue Mar 18 2008 - 22:17:50 CDT)
  • Re: Display bond breaking Axel Kohlmeyer (Tue Mar 18 2008 - 22:25:27 CDT)
• DLPOLY HISTORY FILE in VMD Utpal Sarkar (Tue Mar 18 2008 - 11:08:29 CDT)
  • Re: DLPOLY HISTORY FILE in VMD Axel Kohlmeyer (Tue Mar 18 2008 - 11:23:31 CDT)
• Re-create Figures in VMD Images and Movies Tutorial Dong Xu (Mon Mar 17 2008 - 16:17:57 CDT)
  • Re: Re-create Figures in VMD Images and Movies Tutorial John Stone (Sun Mar 30 2008 - 15:51:16 CDT)
• closewater.tcl Irene Newhouse (Mon Mar 17 2008 - 14:48:37 CDT)
  • Re: closewater.tcl L. Michel Espinoza-Fonseca (Mon Mar 17 2008 - 15:41:14 CDT)
    • RE: closewater.tcl Irene Newhouse (Mon Mar 17 2008 - 15:50:03 CDT)
      • RE: closewater.tcl Axel Kohlmeyer (Mon Mar 17 2008 - 16:02:02 CDT)
      • RE: closewater.tcl Irene Newhouse (Mon Mar 17 2008 - 18:59:24 CDT)
• GLSL lost Ignacio Fernández Galván (Mon Mar 17 2008 - 12:17:21 CDT)
  • Re: GLSL lost Axel Kohlmeyer (Mon Mar 17 2008 - 13:59:35 CDT)
    • Re: GLSL lost Ignacio Fernández Galván (Tue Mar 18 2008 - 04:59:41 CDT)
• different numbers of frames even though... Christopher Stiles (Fri Mar 14 2008 - 01:49:53 CDT)
  • Re: different numbers of frames even though... Axel Kohlmeyer (Fri Mar 14 2008 - 09:49:00 CDT)
    • RE: different numbers of frames even though... Christopher Stiles (Fri Mar 14 2008 - 10:59:50 CDT)
      • RE: different numbers of frames even though... Axel Kohlmeyer (Fri Mar 14 2008 - 13:05:03 CDT)
• ramaplot ramya narasimhan (Fri Mar 14 2008 - 00:46:30 CDT)
  • Re: ramaplot Axel Kohlmeyer (Fri Mar 14 2008 - 09:37:41 CDT)
• Does VMD support to draw a velocity field diagram? Fred (Rui FENG) (Thu Mar 13 2008 - 16:26:13 CDT)
  • Re: Does VMD support to draw a velocity field diagram? Axel Kohlmeyer (Thu Mar 13 2008 - 18:03:54 CDT)
• Diffusion Constant joy tehrani (Wed Mar 12 2008 - 17:44:52 CDT)
  • Re: Diffusion Constant Axel Kohlmeyer (Tue Mar 18 2008 - 22:59:53 CDT)
    • Re: Diffusion Constant Massimo Lai (Wed Mar 19 2008 - 06:09:44 CDT)
      • Re: Diffusion Constant Axel Kohlmeyer (Wed Mar 19 2008 - 06:09:56 CDT)
• Re: about paratool saam (Tue Mar 11 2008 - 11:56:45 CDT)
• Paratools problem with Gaussian Output Nicolas Floquet (Tue Mar 11 2008 - 02:39:05 CDT)
  • Re: Paratools problem with Gaussian Output Jan Saam (Tue Mar 11 2008 - 05:40:06 CDT)
• Using namdenergy without cutoffs? poker_at_physics.usyd.edu.au (Tue Mar 11 2008 - 01:09:20 CDT)
  • Re: Using namdenergy without cutoffs? Peter Freddolino (Tue Mar 11 2008 - 07:45:44 CDT)
    • Re: Using namdenergy without cutoffs? poker_at_physics.usyd.edu.au (Tue Mar 11 2008 - 20:05:46 CDT)
• problem with gopython Carolyn Phillips (Mon Mar 10 2008 - 22:32:05 CDT)
  • Re: problem with gopython John Stone (Tue Mar 11 2008 - 10:06:47 CDT)
• snapshot not compatible with -dispdev text? Emmanuel Levy (Mon Mar 10 2008 - 17:08:02 CDT)
  • Re: snapshot not compatible with -dispdev text? Axel Kohlmeyer (Mon Mar 10 2008 - 17:35:52 CDT)
    • Re: snapshot not compatible with -dispdev text? Emmanuel Levy (Mon Mar 10 2008 - 18:19:49 CDT)
  • Re: snapshot not compatible with -dispdev text? John Stone (Mon Mar 10 2008 - 17:46:22 CDT)
• Solvent accessible surface area calculation L. Michel Espinoza-Fonseca (Mon Mar 10 2008 - 14:41:08 CDT)
• Automatically zoom so that the protein fill the display Emmanuel Levy (Mon Mar 10 2008 - 13:21:46 CDT)
  • Re: Automatically zoom so that the protein fill the display Axel Kohlmeyer (Mon Mar 10 2008 - 13:50:50 CDT)
    • Re: Automatically zoom so that the protein fill the display Emmanuel Levy (Mon Mar 10 2008 - 14:28:30 CDT)
      • Re: Automatically zoom so that the protein fill the display John Stone (Mon Mar 10 2008 - 14:36:02 CDT)
      • Re: Automatically zoom so that the protein fill the display Emmanuel Levy (Mon Mar 10 2008 - 15:03:40 CDT)
    • Re: Automatically zoom so that the protein fill the display John Stone (Mon Mar 10 2008 - 14:17:27 CDT)
      • Re: Automatically zoom so that the protein fill the display Emmanuel Levy (Mon Mar 10 2008 - 14:30:51 CDT)
• pbc join Dongsheng Zhang (Sun Mar 09 2008 - 22:44:32 CDT)
  • Re: pbc join Axel Kohlmeyer (Sun Mar 09 2008 - 23:57:35 CDT)
  • Re: pbc join Olaf Lenz (Mon Mar 10 2008 - 01:49:46 CDT)
• radial density over one frame Christopher Stiles (Sun Mar 09 2008 - 14:55:51 CDT)
  • Re: radial density over one frame Axel Kohlmeyer (Sun Mar 09 2008 - 15:49:17 CDT)
• compile problem for VMD1.8.6: OpenGLRenderer.C Dan Strahs (Sat Mar 08 2008 - 20:17:23 CST)
  • Re: compile problem for VMD1.8.6: OpenGLRenderer.C Axel Kohlmeyer (Sat Mar 08 2008 - 20:51:50 CST)
• calculate volume Dong Xu (Fri Mar 07 2008 - 21:20:40 CST)
  • Re: calculate volume John Stone (Fri Mar 07 2008 - 22:20:45 CST)
    • Re: calculate volume Dong Xu (Fri Mar 07 2008 - 22:46:28 CST)
      • Re: calculate volume John Stone (Sat Mar 08 2008 - 00:01:06 CST)
      • Re: calculate volume Dong Xu (Sat Mar 08 2008 - 11:09:36 CST)
  • Re: calculate volume Axel Kohlmeyer (Sat Mar 08 2008 - 12:29:19 CST)
    • Re: calculate volume Dong Xu (Sat Mar 08 2008 - 17:28:39 CST)
      • Re: calculate volume John Stone (Sat Mar 08 2008 - 19:03:06 CST)
• DCD file Alejandro Ortega (Fri Mar 07 2008 - 12:07:23 CST)
  • Re: DCD file Yinglong Miao (Fri Mar 07 2008 - 14:43:37 CST)
• how to make smooth movies ? maria goranovic (Fri Mar 07 2008 - 07:13:53 CST)
  • Re: how to make smooth movies ? John Stone (Fri Mar 07 2008 - 10:52:15 CST)
  • Re: how to make smooth movies ? Axel Kohlmeyer (Fri Mar 07 2008 - 10:40:59 CST)
• Using RMSDTT in a script and aligning volume data Ignacio Fernández Galván (Fri Mar 07 2008 - 03:35:55 CST)
  • Re: Using RMSDTT in a script and aligning volume data Axel Kohlmeyer (Fri Mar 07 2008 - 10:23:46 CST)
• H2 bond distances calculation n displaying image SENTHIL KUMAR (Thu Mar 06 2008 - 22:07:18 CST)
  • Re: H2 bond distances calculation n displaying image Axel Kohlmeyer (Fri Mar 07 2008 - 10:16:05 CST)
• RMSD trajectory Tool joy tehrani (Thu Mar 06 2008 - 06:45:35 CST)
  • Re: RMSD trajectory Tool Axel Kohlmeyer (Thu Mar 06 2008 - 07:48:05 CST)
• VMD 3D stereo hardware Alba Colet Subirachs (Thu Mar 06 2008 - 03:16:25 CST)
  • Re: VMD 3D stereo hardware John Stone (Thu Mar 06 2008 - 10:25:46 CST)
• complete residues within Leandro Martínez (Thu Mar 06 2008 - 02:20:59 CST)
  • Re: complete residues within jrui_at_ci.uc.pt (Thu Mar 06 2008 - 03:02:28 CST)
    • Re: complete residues within Leandro Martínez (Thu Mar 06 2008 - 03:06:48 CST)
  • Re: complete residues within Olaf Lenz (Thu Mar 06 2008 - 03:28:08 CST)
  • Re: complete residues within Alberto Perez (Thu Mar 06 2008 - 04:38:02 CST)
• TCL/VMD problem Corenflos, Steven Charles (Wed Mar 05 2008 - 11:59:20 CST)
  • Re: TCL/VMD problem John Stone (Wed Mar 05 2008 - 12:25:42 CST)
• radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 11:45:31 CST)
  • Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
    • Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
      • Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 16:34:14 CST)
      • Re: radial distribution function and number integrals Giovanni Bellesia (Wed Mar 05 2008 - 21:26:22 CST)
      • Re: radial distribution function and number integrals Axel Kohlmeyer (Wed Mar 05 2008 - 21:54:46 CST)
• running vmd in parallel Michael Kreim (Wed Mar 05 2008 - 11:13:10 CST)
  • Re: running vmd in parallel John Stone (Wed Mar 05 2008 - 12:31:35 CST)
  • Re: running vmd in parallel Axel Kohlmeyer (Wed Mar 05 2008 - 12:37:02 CST)
• What's the main reason of the structure or function of a protein? Fei Chen (Wed Mar 05 2008 - 07:53:18 CST)
  • Re: What's the main reason of the structure or function of a protein? Andrew Dalke (Wed Mar 05 2008 - 16:32:42 CST)
    • Re: What's the main reason of the structure or function of a protein? Fei Chen (Wed Mar 05 2008 - 19:48:49 CST)
      • Re: What's the main reason of the structure or function of a protein? Andrew Dalke (Thu Mar 06 2008 - 00:25:03 CST)
• about paratool laura (Wed Mar 05 2008 - 02:33:41 CST)
• Visualizing trajectory with changing atoms Suman Chakrabarty (Tue Mar 04 2008 - 15:19:58 CST)
  • Re: Visualizing trajectory with changing atoms John Stone (Tue Mar 04 2008 - 15:26:04 CST)
• VMD languaje information Alba Colet Subirachs (Tue Mar 04 2008 - 10:24:09 CST)
  • Re: VMD languaje information Axel Kohlmeyer (Tue Mar 04 2008 - 11:57:08 CST)
    • Re: VMD languaje information Andrew Dalke (Tue Mar 04 2008 - 14:44:16 CST)
      • Re: VMD languaje information L. Michel Espinoza-Fonseca (Tue Mar 04 2008 - 15:48:41 CST)
  • Re: VMD languaje information John Stone (Tue Mar 04 2008 - 13:53:24 CST)
  • Re: VMD languaje information L. Michel Espinoza-Fonseca (Tue Mar 04 2008 - 14:54:36 CST)
• [carlos.simmerling@gmail.com: ACS awards] John Stone (Mon Mar 03 2008 - 20:11:56 CST)
• VS: average area per lipid Bo Højen Justensen (Mon Mar 03 2008 - 15:10:09 CST)
• average area per lipid Stephen Dutz (Mon Mar 03 2008 - 11:14:11 CST)
  • RE: average area per lipid Stephen Dutz (Mon Mar 03 2008 - 16:06:44 CST)
    • SV: average area per lipid Bo Højen Justensen (Tue Mar 04 2008 - 02:33:11 CST)
• missing basic tutorials for VMD scripting? massimo camarda (Sat Mar 01 2008 - 03:02:49 CST)
  • Re: missing basic tutorials for VMD scripting? Axel Kohlmeyer (Sat Mar 01 2008 - 06:49:32 CST)
  • Re: missing basic tutorials for VMD scripting? John Stone (Mon Mar 03 2008 - 10:57:10 CST)
• unusual bond between the cysteine and arginine residue during the simulation OZGE ENGIN (Fri Feb 29 2008 - 13:30:01 CST)
  • Re: unusual bond between the cysteine and arginine residue during the simulation John Stone (Fri Feb 29 2008 - 13:58:08 CST)
  • Re: unusual bond between the cysteine and arginine residue during the simulation Axel Kohlmeyer (Fri Feb 29 2008 - 13:47:55 CST)
    • Re: Re: unusual bond between the cysteine and arginine residue during the simulation OZGE ENGIN (Fri Feb 29 2008 - 15:01:10 CST)
      • Re: Re: unusual bond between the cysteine and arginine residue during the simulation John Stone (Fri Feb 29 2008 - 15:06:49 CST)
• no convergence in align Jorgen Simonsen (Fri Feb 29 2008 - 07:03:18 CST)
  • Re: no convergence in align Axel Kohlmeyer (Fri Feb 29 2008 - 09:25:23 CST)
    • Re: no convergence in align John Stone (Fri Feb 29 2008 - 11:07:38 CST)
      • Re: no convergence in align Jorgen Simonsen (Fri Feb 29 2008 - 12:15:49 CST)
      • Re: no convergence in align John Stone (Fri Feb 29 2008 - 12:39:20 CST)
  • Re: no convergence in align John Stone (Fri Feb 29 2008 - 10:05:34 CST)
• Re: Cluster plugin and Gromacs g_cluster OZGE ENGIN (Wed Feb 27 2008 - 07:21:15 CST)
• periodic images for trajectory Jennifer Williams (Wed Feb 27 2008 - 04:18:56 CST)
  • Re: periodic images for trajectory Axel Kohlmeyer (Wed Feb 27 2008 - 05:07:04 CST)
  • Re: periodic images for trajectory Olaf Lenz (Wed Feb 27 2008 - 04:59:30 CST)
• Compute force between two atoms Chen Fei (Tue Feb 26 2008 - 20:28:22 CST)
  • Re: Compute force between two atoms Axel Kohlmeyer (Tue Feb 26 2008 - 21:42:48 CST)
• more on lammps and VMD coordinates Arienti, Marco UTRC (Tue Feb 26 2008 - 11:18:37 CST)
  • Re: more on lammps and VMD coordinates Axel Kohlmeyer (Tue Feb 26 2008 - 12:08:13 CST)
• control drawing method Myunggi Yi (Mon Feb 25 2008 - 13:26:33 CST)
  • Re: control drawing method Axel Kohlmeyer (Mon Feb 25 2008 - 14:51:57 CST)
• How to get rubber-like surface with Tachyon renderer Alexander Metz (Mon Feb 25 2008 - 09:37:02 CST)
  • Re: How to get rubber-like surface with Tachyon renderer Axel Kohlmeyer (Mon Feb 25 2008 - 10:13:33 CST)
    • Re: How to get rubber-like surface with Tachyon renderer Axel Kohlmeyer (Mon Feb 25 2008 - 11:21:09 CST)
  • Re: How to get rubber-like surface with Tachyon renderer John Stone (Mon Feb 25 2008 - 11:33:21 CST)
• specify the bonds between the atoms massimo camarda (Mon Feb 25 2008 - 01:48:52 CST)
  • classify and compute the forces between two atoms ChenFei (Mon Feb 25 2008 - 06:38:58 CST)
    • Re: classify and compute the forces between two atoms Axel Kohlmeyer (Mon Feb 25 2008 - 10:08:44 CST)
      • ´ð¸´: classify and compute the forces between two atoms ChenFei (Tue Feb 26 2008 - 01:10:29 CST)
  • Re: specify the bonds between the atoms John Stone (Fri Feb 29 2008 - 14:04:44 CST)
• measure binding site SASA Dong Xu (Sun Feb 24 2008 - 12:38:49 CST)
• Changing a structure of macromolecule with VMD fouchni_at_uni-osnabrueck.de (Sun Feb 24 2008 - 08:38:44 CST)
  • Re: Changing a structure of macromolecule with VMD Peter Freddolino (Sun Feb 24 2008 - 09:27:34 CST)
  • Re: Changing a structure of macromolecule with VMD Axel Kohlmeyer (Sun Feb 24 2008 - 11:36:04 CST)
• visualizing disulphide bonds OZGE ENGIN (Sun Feb 24 2008 - 04:31:18 CST)
  • Re: visualizing disulphide bonds Axel Kohlmeyer (Sun Feb 24 2008 - 06:21:41 CST)
• Ramachandran plot tcl script Anthony Samiotakis (Sat Feb 23 2008 - 15:54:50 CST)
  • Re: Ramachandran plot tcl script Axel Kohlmeyer (Sat Feb 23 2008 - 17:17:38 CST)
• vmd snapshots without display Thomas C. Bishop (Fri Feb 22 2008 - 10:59:50 CST)
  • Re: vmd snapshots without display John Stone (Fri Feb 22 2008 - 11:33:36 CST)
  • Re: vmd snapshots without display Axel Kohlmeyer (Fri Feb 22 2008 - 11:41:19 CST)
• Residue replacement question] fouchni_at_uni-osnabrueck.de (Fri Feb 22 2008 - 04:20:04 CST)
  • Re: Residue replacement question] Axel Kohlmeyer (Sat Feb 23 2008 - 17:29:35 CST)
• movie generation without runtime frame show massimo camarda (Fri Feb 22 2008 - 04:15:58 CST)
  • Re: movie generation without runtime frame show Axel Kohlmeyer (Fri Feb 22 2008 - 06:54:42 CST)
• monitor helicity change Jufang Shan (Thu Feb 21 2008 - 19:06:14 CST)
  • Re: monitor helicity change Axel Kohlmeyer (Thu Feb 21 2008 - 22:40:02 CST)
    • Re: monitor helicity change Jufang Shan (Fri Feb 22 2008 - 11:40:52 CST)
      • Re: Re: monitor helicity change OZGE ENGIN (Fri Feb 22 2008 - 01:58:26 CST)
      • Re: Re: monitor helicity change Jufang Shan (Fri Feb 22 2008 - 11:37:55 CST)
• defining bonds Thomas C. Bishop (Thu Feb 21 2008 - 14:47:15 CST)
  • Re: defining bonds Axel Kohlmeyer (Thu Feb 21 2008 - 15:17:50 CST)
• VASP CHGCAR Wesley Smith (Thu Feb 21 2008 - 14:12:05 CST)
  • Re: VASP CHGCAR Axel Kohlmeyer (Thu Feb 21 2008 - 15:35:07 CST)
    • Re: VASP CHGCAR Wesley Smith (Thu Feb 21 2008 - 17:10:28 CST)
      • Re: VASP CHGCAR Axel Kohlmeyer (Thu Feb 21 2008 - 17:18:50 CST)
      • Re: VASP CHGCAR Wesley Smith (Thu Feb 21 2008 - 17:25:42 CST)
      • Re: VASP CHGCAR John Stone (Thu Feb 21 2008 - 17:22:36 CST)
• couldn't fork child process: not enough memory jrui_at_ci.uc.pt (Thu Feb 21 2008 - 13:47:06 CST)
  • Re: couldn't fork child process: not enough memory Axel Kohlmeyer (Thu Feb 21 2008 - 15:28:16 CST)
    • Re: couldn't fork child process: not enough memory jrui_at_ci.uc.pt (Fri Feb 22 2008 - 05:13:16 CST)
      • Re: couldn't fork child process: not enough memory Peter Freddolino (Fri Feb 22 2008 - 06:48:23 CST)
      • Re: couldn't fork child process: not enough memory jrui_at_ci.uc.pt (Fri Feb 22 2008 - 08:41:54 CST)
  • Re: couldn't fork child process: not enough memory John Stone (Thu Feb 21 2008 - 15:39:30 CST)
• couldn't open "c:/multiseq-406080740227.start.domain": invalid argument Maurice O'Connell (Thu Feb 21 2008 - 12:30:26 CST)
• gromacs trajectory files maria goranovic (Thu Feb 21 2008 - 04:18:17 CST)
  • Re: gromacs trajectory files Axel Kohlmeyer (Thu Feb 21 2008 - 06:58:52 CST)
• Selection in VMD Graphical representation Pavan Ghatty (Wed Feb 20 2008 - 10:22:03 CST)
  • Re: Selection in VMD Graphical representation Axel Kohlmeyer (Wed Feb 20 2008 - 12:05:29 CST)
    • Re: Selection in VMD Graphical representation John Stone (Wed Feb 20 2008 - 13:32:03 CST)
• Residue replacement question fouchni_at_uni-osnabrueck.de (Wed Feb 20 2008 - 04:15:33 CST)
• spacial distribution function L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:52:15 CST)
  • Fwd: spacial distribution function L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:54:53 CST)
  • Re: spacial distribution function L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 19:48:02 CST)
• how to set molinfo from python Jorgen Simonsen (Tue Feb 19 2008 - 02:03:16 CST)
  • Re: how to set molinfo from python Axel Kohlmeyer (Tue Feb 19 2008 - 10:49:17 CST)
• tcl script memory problem - NOT in atomselect Johannes Müllegger (Mon Feb 18 2008 - 21:45:42 CST)
  • Re: tcl script memory problem - NOT in atomselect Axel Kohlmeyer (Tue Feb 19 2008 - 07:35:20 CST)
    • Re: tcl script memory problem - NOT in atomselect Johannes Müllegger (Tue Feb 19 2008 - 11:19:04 CST)
• change axes name massimo camarda (Mon Feb 18 2008 - 11:57:35 CST)
  • Re: change axes name John Stone (Tue Feb 19 2008 - 10:59:23 CST)
• VMD limitation for loading large trajectory file Dong Xu (Fri Feb 15 2008 - 16:48:45 CST)
  • Re: VMD limitation for loading large trajectory file John Stone (Fri Feb 15 2008 - 17:03:15 CST)
  • Re: VMD limitation for loading large trajectory file Axel Kohlmeyer (Fri Feb 15 2008 - 17:00:40 CST)
• Unable to see VDW , CPK representations Arnab Chakrabarty (Fri Feb 15 2008 - 16:25:23 CST)
  • Re: Unable to see VDW , CPK representations John Stone (Fri Feb 15 2008 - 16:42:15 CST)
  • Re: Unable to see VDW , CPK representations Axel Kohlmeyer (Fri Feb 15 2008 - 16:51:34 CST)
    • Re: Unable to see VDW , CPK representations Arnab Chakrabarty (Sat Feb 16 2008 - 17:51:04 CST)
      • Re: Unable to see VDW , CPK representations John Stone (Thu Feb 21 2008 - 11:34:53 CST)
• display of periodic DCD information Thomas C. Bishop (Thu Feb 14 2008 - 14:15:15 CST)
  • Re: display of periodic DCD information Olaf Lenz (Thu Feb 14 2008 - 16:05:32 CST)
    • Re: display of periodic DCD information Olaf Lenz (Thu Feb 14 2008 - 16:08:46 CST)
    • Re: display of periodic DCD information/PBCTOOL Thomas C. Bishop (Fri Feb 15 2008 - 11:44:24 CST)
      • Re: display of periodic DCD information/PBCTOOL Axel Kohlmeyer (Fri Feb 15 2008 - 12:22:40 CST)
  • Re: display of periodic DCD information John Stone (Thu Feb 14 2008 - 16:34:22 CST)
• Volume data formats Ignacio Fernández Galván (Thu Feb 14 2008 - 11:58:40 CST)
  • Re: Volume data formats John Stone (Thu Feb 14 2008 - 12:10:26 CST)
  • Re: Volume data formats Wesley Smith (Thu Feb 14 2008 - 12:37:16 CST)
  • Re: Volume data formats Axel Kohlmeyer (Thu Feb 14 2008 - 12:23:56 CST)
• rmsd different from rmsd implemented in VMD Jorgen Simonsen (Wed Feb 13 2008 - 10:18:19 CST)
  • RE: rmsd different from rmsd implemented in VMD JC Gumbart (Wed Feb 13 2008 - 10:58:13 CST)
  • Re: rmsd different from rmsd implemented in VMD Thomas C. Bishop (Thu Feb 14 2008 - 08:19:08 CST)
• PSFGEN::: ERROR: failed on end of segment Dibyadeep Paul (Wed Feb 13 2008 - 03:38:14 CST)
• Improved VMD performance on MacOSX 10.5.2 Christoph Weber (Tue Feb 12 2008 - 16:51:14 CST)
  • Re: Improved VMD performance on MacOSX 10.5.2 John Stone (Tue Feb 12 2008 - 18:26:09 CST)
• FieldLines Mary Karpen (Tue Feb 12 2008 - 07:34:42 CST)
  • Re: FieldLines Axel Kohlmeyer (Tue Feb 12 2008 - 09:53:36 CST)
  • Re: FieldLines John Stone (Wed Feb 13 2008 - 14:34:04 CST)
• variables from VMD to psfgen Thomas C. Bishop (Mon Feb 11 2008 - 17:28:12 CST)
  • Re: variables from VMD to psfgen L. Michel Espinoza-Fonseca (Mon Feb 11 2008 - 18:22:49 CST)
• measure SASA L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 17:48:12 CST)
• namd energy plugin L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 15:44:04 CST)
  • Re: namd energy plugin Peter Freddolino (Sun Feb 10 2008 - 15:55:50 CST)
    • Re: namd energy plugin L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 16:10:36 CST)
• the script do not update the frame number for secondary structure analysis OZGE ENGIN (Sun Feb 10 2008 - 05:18:46 CST)
  • Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 03:10:25 CST)
    • Re: Re: the script do not update the frame number for secondary structure analysis OZGE ENGIN (Mon Feb 11 2008 - 04:01:15 CST)
      • Re: Re: the script do not update the frame number for secondary structure analysis jrui_at_ci.uc.pt (Mon Feb 11 2008 - 04:55:39 CST)
      • Hinge calculation in MD trajectory using Hingefind plug-in Jorge Hernandez Fernandez (Mon Feb 11 2008 - 13:02:59 CST)
      • Re: Hinge calculation in MD trajectory using Hingefind plug-in John Stone (Fri Feb 15 2008 - 15:40:29 CST)
• the script do not update the frame for secondary structure analysis OZGE ENGIN (Sun Feb 10 2008 - 04:13:03 CST)
  • Re: the script do not update the frame for secondary structure analysis Nuno Loureiro Ferreira (Mon Feb 11 2008 - 03:03:19 CST)
    • Re: the script do not update the frame for secondary structure analysis poker_at_physics.usyd.edu.au (Mon Feb 11 2008 - 18:51:32 CST)
• ssrecalc output for the whole trajectory OZGE ENGIN (Sat Feb 09 2008 - 08:28:02 CST)
• output of the ssrecalc command OZGE ENGIN (Fri Feb 08 2008 - 14:01:45 CST)
  • Re: output of the ssrecalc command jrui_at_ci.uc.pt (Sat Feb 09 2008 - 04:50:46 CST)
    • Re: Re: output of the ssrecalc command OZGE ENGIN (Sat Feb 09 2008 - 06:39:27 CST)
      • Re: Re: output of the ssrecalc command jrui_at_ci.uc.pt (Sat Feb 09 2008 - 07:03:45 CST)
      • Re: Re: Re: output of the ssrecalc command OZGE ENGIN (Sat Feb 09 2008 - 07:22:59 CST)
      • Re: Re: Re: output of the ssrecalc command jrui_at_ci.uc.pt (Sat Feb 09 2008 - 08:53:39 CST)
• installation problem vmd 1.8.6 on fedora 3 kinshuk_at_chem.iitb.ac.in (Fri Feb 08 2008 - 00:15:50 CST)
  • Re: installation problem vmd 1.8.6 on fedora 3 John Stone (Fri Feb 08 2008 - 11:27:28 CST)
    • Re: installation problem vmd 1.8.6 on fedora 3 Bertrand P. S. Russell (Sat Feb 09 2008 - 05:22:24 CST)
      • Re: installation problem vmd 1.8.6 on fedora 3 Axel Kohlmeyer (Sat Feb 09 2008 - 07:57:27 CST)
• heuristic bond computation Tony Sheh (Thu Feb 07 2008 - 21:58:15 CST)
  • Re: heuristic bond computation Axel Kohlmeyer (Thu Feb 07 2008 - 22:16:18 CST)
  • Re: heuristic bond computation John Stone (Thu Feb 07 2008 - 22:37:45 CST)
    • Re: heuristic bond computation Olaf Lenz (Fri Feb 08 2008 - 01:33:37 CST)
      • Re: heuristic bond computation Axel Kohlmeyer (Fri Feb 08 2008 - 08:03:31 CST)
• SASA calculation (protein + small molecules) Manali Mehendale (Thu Feb 07 2008 - 14:45:37 CST)
  • Re: SASA calculation (protein + small molecules) Dong Xu (Sun Feb 24 2008 - 20:42:44 CST)
    • Re: SASA calculation (protein + small molecules) John Stone (Fri Feb 29 2008 - 13:11:37 CST)
• merge pdb Lucie Huynh (Wed Feb 06 2008 - 10:29:58 CST)
  • Re: merge pdb Axel Kohlmeyer (Wed Feb 06 2008 - 10:41:43 CST)
• vmd maxAtom C L Freeman (Wed Feb 06 2008 - 10:10:30 CST)
  • Re: vmd maxAtom Axel Kohlmeyer (Wed Feb 06 2008 - 10:47:56 CST)
    • Re: vmd maxAtom C L Freeman (Thu Feb 07 2008 - 04:53:30 CST)
      • Re: vmd maxAtom Axel Kohlmeyer (Thu Feb 07 2008 - 05:58:14 CST)
• help with animate read command Jim Pfaendtner (Tue Feb 05 2008 - 11:26:47 CST)
  • Re: help with animate read command John Stone (Tue Feb 05 2008 - 13:48:02 CST)
    • Re: animate read command Jim Pfaendtner (Tue Feb 05 2008 - 13:55:29 CST)
      • Re: animate read command John Stone (Tue Feb 05 2008 - 14:16:00 CST)
• namd help? Corenflos, Steven Charles (Tue Feb 05 2008 - 12:15:47 CST)
  • Re: namd help? Axel Kohlmeyer (Tue Feb 05 2008 - 12:54:36 CST)
• About Cluster Plug-in OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
  • Re: About Cluster Plug-in John Stone (Tue Feb 05 2008 - 09:45:23 CST)
• Displaying Counter Alongside Animation Adrian Koh (Tue Feb 05 2008 - 00:20:36 CST)
  • Re: Displaying Counter Alongside Animation Axel Kohlmeyer (Tue Feb 05 2008 - 03:23:44 CST)
  • RE: Displaying Counter alongside animation Adrian Koh (Mon Feb 11 2008 - 03:08:44 CST)
• VMD, NAMDenergy & AMBER parameters Irene Newhouse (Mon Feb 04 2008 - 17:23:37 CST)
  • Re: VMD, NAMDenergy & AMBER parameters Peter Freddolino (Tue Feb 05 2008 - 06:51:37 CST)
    • RE: VMD, NAMDenergy & AMBER parameters Irene Newhouse (Tue Feb 05 2008 - 12:46:40 CST)
• To create Tetramer Swarna Patra (Mon Feb 04 2008 - 16:42:52 CST)
  • RE: To create Tetramer Irene Newhouse (Mon Feb 04 2008 - 17:56:41 CST)
  • Re: To create Tetramer John Stone (Tue Feb 05 2008 - 09:55:43 CST)
• Question about geometrical figures Felix Rodrigues Gulias (Fri Feb 01 2008 - 11:03:42 CST)
  • Re: Question about geometrical figures Axel Kohlmeyer (Fri Feb 01 2008 - 11:28:35 CST)
• question about 'measure bond' MW Van der Kamp, School of Chemistry (Fri Feb 01 2008 - 09:21:20 CST)
  • Re: question about 'measure bond' Axel Kohlmeyer (Fri Feb 01 2008 - 09:46:30 CST)
• Rdf from a specific point Robert Coridan (Fri Feb 01 2008 - 06:12:42 CST)
  • Re: Rdf from a specific point Axel Kohlmeyer (Fri Feb 01 2008 - 08:55:39 CST)
    • Re: Rdf from a specific point Robert Coridan (Fri Feb 01 2008 - 11:48:19 CST)
      • Re: Rdf from a specific point Axel Kohlmeyer (Fri Feb 01 2008 - 11:48:12 CST)
• animation of an atom diffusion inside a bulk crystal massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
  • Re: animation of an atom diffusion inside a bulk crystal Axel Kohlmeyer (Fri Feb 01 2008 - 05:01:33 CST)
• sausage view of NMR ensembles dimka (Thu Jan 31 2008 - 23:10:59 CST)
  • Re: sausage view of NMR ensembles John Stone (Thu Jan 31 2008 - 23:31:36 CST)
• Percentage Helicity calculation in VMD aneesh cna (Thu Jan 31 2008 - 22:54:53 CST)
  • Re: Percentage Helicity calculation in VMD Axel Kohlmeyer (Thu Jan 31 2008 - 23:37:28 CST)
    • Re: Percentage Helicity calculation in VMD aneesh cna (Fri Feb 01 2008 - 03:18:53 CST)
      • Re: Percentage Helicity calculation in VMD Peter Freddolino (Sat Feb 02 2008 - 08:42:40 CST)
      • Re: Percentage Helicity calculation in VMD John Stone (Sat Feb 02 2008 - 15:30:18 CST)
• problems with MDenergy Irene Newhouse (Wed Jan 30 2008 - 15:06:49 CST)
• Mutate nucleotides Maurizio Olla (Tue Jan 29 2008 - 23:51:05 CST)
• Sasa script in python returns "Runtime error" Per Jr. Greisen (Tue Jan 29 2008 - 09:53:59 CST)
  • Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
    • Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
      • Re: Sasa script in python returns "Runtime error" Per Jr. Greisen (Wed Jan 30 2008 - 10:13:38 CST)
      • Re: Sasa script in python returns "Runtime error" John Stone (Wed Jan 30 2008 - 10:26:18 CST)
      • Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 10:28:57 CST)
      • Re: Sasa script in python returns "Runtime error" Axel Kohlmeyer (Wed Jan 30 2008 - 10:24:55 CST)
• (no subject) mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
  • Re: your mail Axel Kohlmeyer (Mon Jan 28 2008 - 19:36:38 CST)
• 'gopython' Tkinter and Numeric Python error brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
  • Re: 'gopython' Tkinter and Numeric Python error John Stone (Wed Jan 30 2008 - 10:29:49 CST)
• (no subject) Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
  • Re: Peter Freddolino (Mon Jan 28 2008 - 08:56:39 CST)
• where is the "move" procedure in the toturial Justin JEONG (Sun Jan 27 2008 - 16:32:03 CST)
  • Re: where is the "move" procedure in the toturial Axel Kohlmeyer (Mon Jan 28 2008 - 09:08:25 CST)
• VMD 1.8.6, XTC format on Mac OS X 10.5.1 Tony Sheh (Sat Jan 26 2008 - 11:56:01 CST)
  • Re: VMD 1.8.6, XTC format on Mac OS X 10.5.1 Axel Kohlmeyer (Sat Jan 26 2008 - 13:29:35 CST)
    • Re: VMD 1.8.6, XTC format on Mac OS X 10.5.1 Christoph Weber (Sat Jan 26 2008 - 16:59:17 CST)
• re: script hangs when use full dcd file Irene Newhouse (Fri Jan 25 2008 - 14:14:53 CST)
  • Re: re: script hangs when use full dcd file John Stone (Fri Jan 25 2008 - 14:32:42 CST)
    • RE: re: script hangs when use full dcd file Irene Newhouse (Fri Jan 25 2008 - 14:56:47 CST)
• problem with timeline plugin aneesh cna (Fri Jan 25 2008 - 00:12:17 CST)
  • Re: problem with timeline plugin John Stone (Fri Jan 25 2008 - 00:17:48 CST)
• MSVC Projects Corrupt and Missing Wesley Smith (Thu Jan 24 2008 - 22:18:09 CST)
  • Re: MSVC Projects Corrupt and Missing Axel Kohlmeyer (Thu Jan 24 2008 - 22:42:47 CST)
    • Re: MSVC Projects Corrupt and Missing Wesley Smith (Thu Jan 24 2008 - 22:53:58 CST)
  • Re: MSVC Projects Corrupt and Missing John Stone (Thu Jan 24 2008 - 22:45:18 CST)
    • Re: MSVC Projects Corrupt and Missing Wesley Smith (Thu Jan 24 2008 - 22:56:03 CST)
      • Re: MSVC Projects Corrupt and Missing John Stone (Thu Jan 24 2008 - 23:10:27 CST)
      • Re: MSVC Projects Corrupt and Missing Wesley Smith (Thu Jan 24 2008 - 23:25:14 CST)
      • Re: MSVC Projects Corrupt and Missing Wesley Smith (Sat Jan 26 2008 - 14:51:01 CST)
• Can VMD visualize forces? Yinglong Miao (Thu Jan 24 2008 - 17:16:14 CST)
  • Re: Can VMD visualize forces? John Stone (Thu Jan 24 2008 - 18:01:20 CST)
    • Re: Can VMD visualize forces? Thomas C. Bishop (Fri Jan 25 2008 - 09:44:29 CST)
• problems with a script Irene Newhouse (Thu Jan 24 2008 - 16:39:40 CST)
  • Re: problems with a script John Stone (Fri Jan 25 2008 - 00:15:14 CST)
• preserving atom index or hexadecimal residue numbers after writepdb Vlad Cojocaru (Thu Jan 24 2008 - 04:44:40 CST)
  • Re: preserving atom index or hexadecimal residue numbers after writepdb John Stone (Fri Jan 25 2008 - 00:12:56 CST)
• minimization command Sourmaidou, Damiani (Wed Jan 23 2008 - 12:35:49 CST)
• proximity of residues Francesco Pietra (Wed Jan 23 2008 - 01:40:51 CST)
  • Re: proximity of residues Axel Kohlmeyer (Wed Jan 23 2008 - 03:49:49 CST)
    • Re: proximity of residues L. Michel Espinoza-Fonseca (Wed Jan 23 2008 - 04:21:01 CST)
      • Re: proximity of residues Axel Kohlmeyer (Wed Jan 23 2008 - 04:56:19 CST)
      • Electron density Kristin Wunsch (Wed Jan 23 2008 - 09:03:12 CST)
      • Re: Electron density John Stone (Thu Jan 24 2008 - 18:08:52 CST)
      • Re: proximity of residues Francesco Pietra (Wed Jan 23 2008 - 09:19:12 CST)
• delatom "no segment..." Lucie Huynh (Tue Jan 22 2008 - 05:10:00 CST)
  • Re: delatom "no segment..." Axel Kohlmeyer (Tue Jan 22 2008 - 05:49:32 CST)
  • Question about autopsf Lucas Fernández Seivane (Tue Jan 22 2008 - 13:39:06 CST)
    • Re: Question about autopsf Peter Freddolino (Tue Jan 22 2008 - 14:26:25 CST)
      • Re: Question about autopsf Lucas Fernández Seivane (Tue Jan 22 2008 - 16:07:50 CST)
      • Re: Question about autopsf Peter Freddolino (Tue Jan 22 2008 - 20:00:40 CST)
• Inconsistencies in NAMD simulations Chandra Ramananjara (Tue Jan 22 2008 - 02:49:53 CST)
• local urea concentration L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 11:17:14 CST)
  • Re: local urea concentration L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 12:05:32 CST)
• SSE from the protein sequence Lu Lin (Mon Jan 21 2008 - 09:11:49 CST)
  • Re: SSE from the protein sequence Axel Kohlmeyer (Mon Jan 21 2008 - 09:53:10 CST)
    • Re: SSE from the protein sequence Peter Freddolino (Mon Jan 21 2008 - 10:09:48 CST)
      • Re: SSE from the protein sequence L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 10:51:11 CST)
• problem with sidechian representation gurpreet singh (Mon Jan 21 2008 - 00:02:37 CST)
  • Re: problem with sidechian representation jrui_at_ci.uc.pt (Mon Jan 21 2008 - 04:28:00 CST)
• VMD drawing Wesley Smith (Sun Jan 20 2008 - 15:51:06 CST)
  • Re: VMD drawing John Stone (Sun Jan 20 2008 - 20:59:51 CST)
    • Re: VMD drawing Wesley Smith (Sun Jan 20 2008 - 21:08:27 CST)
• Error in changing on screen options of VMD Monika Sharma (Fri Jan 18 2008 - 07:45:07 CST)
  • Re: Error in changing on screen options of VMD John Stone (Sun Jan 20 2008