VMD-L Mailing List
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About this archive
Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri Dec 13 2024 - 16:19:36 CST
- Issue with patching when running mutator in vmd Daniel Guion (Fri Dec 13 2024 - 16:19:19 CST)
- How to use QMtool to extract internal coordinates Ronit Sarangi (Mon Dec 02 2024 - 12:21:57 CST)
- focusing on a residue Sarfraz Ahmad (Thu Nov 21 2024 - 08:05:48 CST)
- VMD always open from home folder in Mac Roshan Shrestha (Wed Nov 20 2024 - 11:40:19 CST)
- black VMD opengl screen after replacing GPU Carlos Simmerling (Tue Nov 19 2024 - 16:10:46 CST)
- Tachyon download is offline Marcelo C. R. Melo (Sun Nov 17 2024 - 19:26:30 CST)
- << Using CPK/Rasmol color scheme >> I. Camps (Mon Nov 11 2024 - 15:25:49 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 08:51:11 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 08:50:43 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 04:19:32 CST)
- Joel Subach shared "Charge Value from -2 to 0 I" with you Joel Subach (via Dropbox) (Wed Nov 06 2024 - 04:19:58 CST)
- Volume considered in calculation of g(r) Rajahmundry Ganesh Kumar ch20d408 (Mon Nov 04 2024 - 06:37:36 CST)
- ffTK Water Int Tab .inp File dropping the Charge Value from -2 to 0 Inquiry? Joel Subach (Mon Nov 04 2024 - 09:16:41 CST)
- Partial black screen with Tachyon RTX RTRT Marcelo C. R. Melo (Mon Oct 28 2024 - 17:00:45 CDT)
- CUDA Error with Quicksurf Arango, Andres Santiago (Fri Oct 25 2024 - 14:39:37 CDT)
- ffTK Water Int tab generated .inp Charge 0 Mult 1 INQUIRY? Joel Subach (Mon Oct 21 2024 - 06:24:11 CDT)
- Automatic PSF Builder on Windows Mustafa Tekpinar (Sun Oct 13 2024 - 11:38:23 CDT)
- PBC wrap (close to the boundaries) Manuel Perez Escribano (Mon Oct 07 2024 - 12:55:43 CDT)
- Two different type of color set for potential map of overlapped molecules Nakshatra Upadhyay (Wed Oct 02 2024 - 04:13:38 CDT)
- FFTK partial charge assignment weak acid ONOH (HNO2) - Water Shift settings Marinus Veldhuizen (Wed Oct 02 2024 - 03:15:05 CDT)
- VMD 1.9.4 NAMDEnergy plugin query Roni Saiba (Thu Sep 26 2024 - 22:56:50 CDT)
- FFTK error - empty string not an operand of * Harini S H (Wed Sep 25 2024 - 13:46:40 CDT)
- .str file generation of nitrile group containing ligands Hideyuki Miyatake (Tue Sep 24 2024 - 20:55:26 CDT)
- Re: .str file generation of nitrile group containing ligands Josh Vermaas (Wed Sep 25 2024 - 09:09:41 CDT)
- Artifacts in GLSL rendering mode: deformation and noisy shading of atom spheres Zilong HE (Tue Sep 24 2024 - 02:00:00 CDT)
- Visualizing elastic network proteins Samapika Sahu (P20CY011) (Mon Sep 16 2024 - 13:49:31 CDT)
- FFTK charge optimisation: ORCA issue - cant use empty string as an operand of '*' Harini S H (Mon Sep 16 2024 - 08:36:56 CDT)
- retaining HETAM and conect records in pdb files Bennion, Brian (Fri Sep 13 2024 - 17:14:37 CDT)
- VMD ORCA 6 Update Mcguire, Kelly (Fri Sep 06 2024 - 17:09:29 CDT)
- FFTK Opt. Torsions End of File Issue Mcguire, Kelly (Wed Sep 04 2024 - 00:54:05 CDT)
- FFTK Opt. Torsions End of File Issue Mcguire, Kelly (Wed Sep 04 2024 - 00:29:13 CDT)
- FFTK Calc. Bonded ORCA Issue Mcguire, Kelly (Sat Aug 31 2024 - 17:54:33 CDT)
- Re: ffTK Opt Charge APPLICATION HALTING ON ERROR Inquiry Joel Subach (Sat Aug 24 2024 - 10:53:04 CDT)
- Problem with pbctools join Laura Ernstsen (Wed Aug 21 2024 - 03:41:33 CDT)
- Problem with pbctools join Laura Ernstsen (Wed Aug 21 2024 - 01:54:04 CDT)
- Re: Select atoms on surface of sphere Vermaas, Josh (Fri Aug 16 2024 - 11:11:34 CDT)
- Select atoms on surface of sphere Raman Preet Singh (Fri Aug 16 2024 - 09:05:20 CDT)
- residue torsion angles Alexei Rossokhin (Wed Aug 14 2024 - 05:55:57 CDT)
- altloc pdb entries Bennion, Brian (Tue Aug 13 2024 - 19:47:41 CDT)
- Reminder: Hands-On Workshop on Computational Biophysics in Auburn, AL Sinclair, Matt (Mon Aug 12 2024 - 13:10:07 CDT)
- pbc box unwrapping/wrapping error infinite bond angles/box sides Ryan Woltz (Fri Aug 09 2024 - 17:58:42 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 04 2024 - 05:04:33 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 04 2024 - 06:10:59 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Daniel Fellner (Fri Aug 16 2024 - 21:45:53 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sat Aug 17 2024 - 05:03:19 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 18 2024 - 04:47:22 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sat Nov 09 2024 - 23:39:54 CST)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Daniel Fellner (Fri Aug 16 2024 - 21:45:53 CDT)
- Re: Re: flipping a .inp file for a water interaction INQUIRY Joel Subach (Sun Aug 04 2024 - 06:10:59 CDT)
- Re: flipping a .inp file for a water interaction INQUIRY Daniel Fellner (Thu Aug 01 2024 - 20:48:58 CDT)
- CHGCAR file read in VMD SKM (Wed Jul 31 2024 - 22:06:25 CDT)
- selecting first instance of a ligand from several in pdb file Bennion, Brian (Sat Jul 27 2024 - 18:10:43 CDT)
- Re: selecting first instance of a ligand from several in pdb file Josh Vermaas (Mon Jul 29 2024 - 09:42:33 CDT)
- Re: selecting first instance of a ligand from several in pdb file Bennion, Brian (Mon Jul 29 2024 - 13:49:39 CDT)
- VMD reads vasp files with variable cells incorrectly Ronald Cohen (Mon Jul 29 2024 - 14:06:41 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Diego Gomes (Wed Jul 31 2024 - 10:10:20 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Wed Jul 31 2024 - 11:24:09 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Diego Gomes (Fri Aug 02 2024 - 12:06:08 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Fri Aug 02 2024 - 12:07:35 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Fri Aug 02 2024 - 13:58:51 CDT)
- Re: VMD reads vasp files with variable cells incorrectly Ronald Cohen (Sun Aug 04 2024 - 18:10:38 CDT)
- Re: selecting first instance of a ligand from several in pdb file Josh Vermaas (Mon Jul 29 2024 - 09:42:33 CDT)
- Query on networkview plugin Sruthi Sudhakar (Fri Jul 26 2024 - 07:13:21 CDT)
- fftk, ORCA, Bond and Angle Optimization, error As a subsequent Frequencies calculation has been requested Vardan Vardanyan (Tue Jul 23 2024 - 15:29:09 CDT)
- Re: fftk, ORCA, Bond and Angle Optimization, error As a subsequent Frequencies calculation has been requested Gumbart, JC (Thu Jul 25 2024 - 12:46:36 CDT)
- How can a known point be moved to the origin of the screen? Pacci Evaristo, Felipe Fabricio (Sun Jul 21 2024 - 23:19:36 CDT)
- Compiling CUDAMarchingCubes.cu build error Chris Taylor (Sun Jul 21 2024 - 20:53:43 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Vermaas, Josh (Mon Jul 22 2024 - 20:16:50 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Tue Jul 23 2024 - 20:02:18 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Vermaas, Josh (Wed Jul 24 2024 - 09:57:02 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Wed Jul 24 2024 - 20:14:04 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Josh Vermaas (Thu Jul 25 2024 - 08:23:05 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Thu Jul 25 2024 - 23:08:47 CDT)
- compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Chris Taylor (Fri Jul 26 2024 - 00:22:45 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Diego Gomes (Fri Jul 26 2024 - 09:31:43 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Chris Taylor (Fri Jul 26 2024 - 22:15:58 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Vermaas, Josh (Fri Jul 26 2024 - 10:21:01 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Chris Taylor (Fri Jul 26 2024 - 22:11:53 CDT)
- Re: compile vmd-1.9.4a57 source - OptiXRenderer.h:84:10: fatal error: optix_math.h: No such file or directory Diego Gomes (Wed Jul 31 2024 - 10:19:04 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Chris Taylor (Tue Jul 23 2024 - 20:02:18 CDT)
- Re: Compiling CUDAMarchingCubes.cu build error Vermaas, Josh (Mon Jul 22 2024 - 20:16:50 CDT)
- Working with trajectory and updating frames dependents on current frame Laura X Sepulveda (Thu Jul 18 2024 - 12:52:06 CDT)
- TkConsol mohamed marzouk (Wed Jul 17 2024 - 15:02:37 CDT)
- Opening file after i downloaded vmd Micah Watson (Tue Jul 16 2024 - 20:33:06 CDT)
- pbc get -all fails Ronald Cohen (Tue Jul 16 2024 - 08:47:25 CDT)
- PBC issue Aditi Gotkhindikar (Tue Jul 16 2024 - 03:22:20 CDT)
- FFTK water molecules overlapped and charge optimisation error MARIA MILANESI (Mon Jul 15 2024 - 04:06:27 CDT)
- Re: ffTK Water Int Tab .inp File Flipping a Waters Coordinates Inquiry Joel Subach (Sun Jul 14 2024 - 12:19:46 CDT)
- ffTK Water Int Tab Optimization INTERACTION DISTANCE INQUIRY Joel Subach (Sun Jul 07 2024 - 05:35:12 CDT)
- loading multiple pdbs as frames and the filenames Ryan Woltz (Wed Jun 26 2024 - 13:03:11 CDT)
- wrapping atoms along a specific axis with pbctools SHIVAM TIWARI (Wed Jun 26 2024 - 03:30:19 CDT)
- Potential Bug Using NAMD Energy Plugin from the Command Line Jacob Graham (Tue Jun 18 2024 - 14:59:45 CDT)
- bonding across periodic walls Kevin Wittkowski (Thu Jun 13 2024 - 14:34:08 CDT)
- VMD receives Segmentation Fault After NVIDIA Driver Update GIANG NGUYEN (Fri Jun 07 2024 - 04:15:10 CDT)
- Display both-signed portions of isosurface jimkress_58_at_kressworks.org (Sun Jun 02 2024 - 01:02:52 CDT)
- Issue sending forces to atoms with IMD and LAMMPS Tom (Fri May 31 2024 - 12:55:12 CDT)
- Deleting portions of isosurfaces jimkress_58_at_kressworks.org (Thu May 23 2024 - 18:30:11 CDT)
- pbc wrap for nonbonded group of atoms SHRAVANI NETHI . (Mon May 20 2024 - 06:40:34 CDT)
- Deleting portions of isosurfaces jimkress_58_at_kressworks.org (Sat May 18 2024 - 00:12:45 CDT)
- namdenergy plugin energy values Ravithree Senanayake (Tue May 14 2024 - 12:48:23 CDT)
- NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Tue May 14 2024 - 08:06:59 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Tue May 14 2024 - 10:18:44 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Wed May 15 2024 - 07:07:12 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Wed May 15 2024 - 10:58:07 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Mon May 20 2024 - 14:05:58 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Roni Saiba (Mon May 20 2024 - 22:22:06 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Tue May 21 2024 - 09:03:17 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 DENILSON FERREIRA DE OLIVEIRA (Wed May 15 2024 - 07:07:12 CDT)
- Re: NUMLP NUMLPH section eliminated by VMD 1.9.4a57 Diego Gomes (Tue May 14 2024 - 10:18:44 CDT)
- Adding an Implicit Solvation Compatible with below ffTK suggested Methods INQUIRY Joel Subach (Tue May 07 2024 - 13:26:58 CDT)
- saving a PDB in a different order than it was loaded Ryan Woltz (Thu May 02 2024 - 21:30:39 CDT)
- Re: saving a PDB in a different order than it was loaded Axel Kohlmeyer (Thu May 02 2024 - 22:30:44 CDT)
- restarting calculations anytime within Equilibration and MD simulations steps in QwikMD Sefcikova, Jana (Tue Apr 30 2024 - 12:58:34 CDT)
- Reminder: Hands-On Workshop on Computational Biophysics in Auburn, AL Sinclair, Matt (Mon Apr 29 2024 - 12:39:54 CDT)
- is ! RI-MP2 6-31G* TightSCF opt autoaux rijcosx compatibile with ffTK CHARMM INQUIRY Joel Subach (Sat Apr 27 2024 - 02:03:24 CDT)
- ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 05:07:16 CDT)
- Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 06:37:51 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Vermaas, Josh (Wed Apr 24 2024 - 08:35:29 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 09:00:23 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Thu Apr 25 2024 - 05:42:29 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Josh Vermaas (Thu Apr 25 2024 - 09:23:26 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Thu Apr 25 2024 - 09:39:46 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Thu Apr 25 2024 - 10:17:20 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Sat May 11 2024 - 11:09:14 CDT)
- Re: Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Vermaas, Josh (Wed Apr 24 2024 - 08:35:29 CDT)
- Re: ffTK HF/6-31G Base Set QM or a Different QM Base Set? Joel Subach (Wed Apr 24 2024 - 06:37:51 CDT)
- mol addfile CHARLES MCCALLUM (Thu Apr 18 2024 - 13:18:51 CDT)
- MD Videos and fixing the view into a certain perspective Lohry, David Patrick (Thu Apr 18 2024 - 10:53:24 CDT)
- VMD 1.9.4a53 on Windows 11 crashing frequently Lohry, David Patrick (Tue Apr 16 2024 - 17:45:45 CDT)
- Problems with ‘Surf’ as a “Drawing method” for protein in VMD installed to a local folder Dmitry Suplatov (Thu Apr 11 2024 - 08:04:45 CDT)
- Can not run VMD in interactive mode on the supercomputer from Mac mohamed marzouk (Thu Apr 11 2024 - 01:16:59 CDT)
- VR Movies Collette Riviere (Wed Apr 03 2024 - 23:04:15 CDT)
- Index extractor Python Code Sam Fredrick (Wed Apr 03 2024 - 19:47:55 CDT)
- error during membrane mixing: can't read "toplist": no such variable Tvedt, Nathan (Fri Mar 29 2024 - 14:03:14 CDT)
- Atom selection based on center of sphere Peter (Tue Mar 26 2024 - 17:04:45 CDT)
- Can't connect to BioCORE M Suma (Tue Mar 26 2024 - 02:03:14 CDT)
- Atoms poorly guessed after applying a patch in Psfgen Kyle Billings (Mon Mar 25 2024 - 12:28:59 CDT)
- Re: Atoms poorly guessed after applying a patch in Psfgen Josh Vermaas (Mon Mar 25 2024 - 15:01:52 CDT)
- Problem to launch vmd1.9.4 (v2022-04-27) in wsl linux Roozbeh (Fri Mar 22 2024 - 20:17:28 CDT)
- NMWiz Arrow Colors Mcguire, Kelly (Thu Mar 21 2024 - 17:50:01 CDT)
- save/load visualization for data file 靳心瑶 (Sun Mar 17 2024 - 07:40:35 CDT)
- FFTK - Dihedral doesn't fit the QM target data francesco quilli (Mon Mar 11 2024 - 10:12:52 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Ernesto Aleksei Delgado Hurtado (Mon Mar 11 2024 - 17:21:46 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Mon Mar 11 2024 - 21:43:51 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data francesco quilli (Thu Mar 14 2024 - 02:55:24 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Daniel Fellner (Thu Mar 14 2024 - 03:51:15 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Thu Mar 14 2024 - 07:18:31 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Klimkowski, V (Thu Mar 14 2024 - 18:23:27 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data francesco quilli (Thu Mar 21 2024 - 08:27:40 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Daniel Fellner (Thu Mar 21 2024 - 18:25:16 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Fri Mar 22 2024 - 16:21:59 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Gumbart, JC (Mon Mar 11 2024 - 21:43:51 CDT)
- Re: FFTK - Dihedral doesn't fit the QM target data Ernesto Aleksei Delgado Hurtado (Mon Mar 11 2024 - 17:21:46 CDT)
- Re: looking for help to solve FATAL ERRORQ=BC=9A_Didn=27t_find_vdw_parameter_for_atom_type_C11?= Josh Vermaas (Thu Mar 07 2024 - 13:18:13 CST)
- issue with wrapping water molecules Yuan Xue (Wed Mar 06 2024 - 20:47:01 CST)
- How to define an atom selection for a dynamic space Jacob Layton (Wed Mar 06 2024 - 13:43:16 CST)
- looking for help to solve FATAL ERROR： Didn't find vdw parameter for atom type C11 Yixin Chen (Wed Mar 06 2024 - 08:12:31 CST)
- VR Movie Rendering Collette Riviere (Tue Mar 05 2024 - 22:05:16 CST)
- Water molecules cling to protein in last frame Yuan Xue (Sat Mar 02 2024 - 10:42:54 CST)
- Problems generating movies for vmd 1.9.4a53 Kung, Ryan (Thu Feb 29 2024 - 09:54:53 CST)
- Fwd: bond lengths and angle display SKM (Wed Feb 28 2024 - 21:43:52 CST)
- How to access the Lable tab's info of atoms? Big Chungus (Wed Feb 28 2024 - 20:57:11 CST)
- Error in Molefacture 2.0: Unable to write PSF and PDB files Sarthak Mohanty (Mon Feb 26 2024 - 02:19:07 CST)
- bug when starting VMD on MACOS ARM Maud Jusot (Wed Feb 21 2024 - 08:24:02 CST)
- Anyone Completed ffTK Calc Bonded Tab using ORCA gbw instead of Gaussian chk? Joel Subach (Mon Feb 19 2024 - 14:08:30 CST)
- atomselection near periodic boundaries Amir (Sun Feb 18 2024 - 14:54:49 CST)
- VMD Programmer position available at TCBG / University of Illinois Isralewitz, Barry (Thu Feb 15 2024 - 08:54:20 CST)
- Re: ffTK Calc Bonded Tab gbw file not recognized INQUIRY Joel Subach (Wed Feb 14 2024 - 05:40:24 CST)
- ffTK Opt. Charge Run QM Target Data WATER INTERACTION ENERGY DATA INQUIRY Joel Subach (Tue Feb 06 2024 - 09:43:16 CST)
- parseFEP and solvate pulgins in VMD 1.9.3 Gianluca Interlandi (Mon Feb 05 2024 - 12:58:01 CST)
- unable to open VMD as normal He, Xibing (Mon Feb 05 2024 - 11:41:38 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Mon Feb 05 2024 - 16:58:07 CST)
- Re: unable to open VMD as normal He, Xibing (Mon Feb 05 2024 - 17:35:11 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Mon Feb 05 2024 - 19:26:07 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 09:36:19 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Tue Feb 06 2024 - 10:46:16 CST)
- Re: unable to open VMD as normal Diego Gomes (Tue Feb 06 2024 - 12:25:08 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 12:37:10 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 14:42:07 CST)
- Re: unable to open VMD as normal Diego Gomes (Tue Feb 06 2024 - 15:07:22 CST)
- Re: unable to open VMD as normal He, Xibing (Tue Feb 06 2024 - 15:28:26 CST)
- Re: unable to open VMD as normal Bennion, Brian (Tue Feb 06 2024 - 17:42:31 CST)
- RE: unable to open VMD as normal Bennion, Brian (Tue Feb 06 2024 - 11:57:41 CST)
- Re: unable to open VMD as normal Diego Gomes (Wed Feb 07 2024 - 02:13:14 CST)
- Re: unable to open VMD as normal He, Xibing (Mon Feb 05 2024 - 17:35:11 CST)
- Re: unable to open VMD as normal Axel Kohlmeyer (Mon Feb 05 2024 - 16:58:07 CST)
- Coarse Grain Setup Mcguire, Kelly (Mon Feb 05 2024 - 00:01:55 CST)
- ffTK Opt. Charge Run Optimization Error PSF File Problem INQUIRY Joel Subach (Sat Feb 03 2024 - 08:36:02 CST)
- NAMDenergy plugin Alexei Rossokhin (Fri Jan 26 2024 - 07:38:58 CST)
- Re: working out the output files from Timeline jing liang (Wed Jan 24 2024 - 23:58:11 CST)
- working out the output files from Timeline jing liang (Mon Jan 22 2024 - 11:44:48 CST)
- ffTK charge optimization error francesco quilli (Mon Jan 08 2024 - 08:38:31 CST)
- << Hbonds distances >> I. Camps (Fri Jan 05 2024 - 14:06:06 CST)
- assigning segment id or a unique identity in lammps data file SHIVAM TIWARI (Wed Jan 03 2024 - 11:27:38 CST)
- M1 Mac menu issues Corey Taylor (Wed Dec 27 2023 - 05:22:48 CST)
- Total charge from *.psf alone Francesco Pietra (Thu Dec 21 2023 - 15:07:35 CST)
- Visualization of new bonds created in LAMMPS simulation Roni Saiba (Thu Dec 21 2023 - 01:05:23 CST)
- Re: ffTK Water Interactions Ligand Atom Hydrogen Bond Acceptors Acting as Donors Inquiry Joel Subach (Thu Dec 14 2023 - 06:19:45 CST)
- Missing operand error in vmd pathways plugin Ananya Nayak (Thu Dec 14 2023 - 01:29:56 CST)
- Re: ffTK vmd Index Atom Numbering via ORCA .inp and .out Files Inquiry Joel Subach (Wed Dec 13 2023 - 03:46:25 CST)
- (no subject) Ananya Nayak (Tue Dec 12 2023 - 23:06:48 CST)
- Please help me understand the .dx file generated when using PME Electrostatics Analysis Jester Itliong (Sat Dec 09 2023 - 11:46:29 CST)
- VMD for macOS -- easy install with new code-signed versions Isralewitz, Barry (Fri Dec 01 2023 - 19:29:06 CST)
- VMD for macOS - easy install with new code-signed versions Barry Isralewitz (Fri Dec 01 2023 - 17:29:19 CST)
- how to control "offset" and "midpoint" of color scale simultaneously using tk-console Suleman Ansari (P19PH004) (Fri Dec 01 2023 - 00:54:05 CST)
- Startup position of OpenGL Display window and VMD console window 李安邦 (Wed Nov 29 2023 - 20:44:29 CST)
- Re: Interactive MD - 3DSystems Touch Trollmann, Marius (Tue Nov 28 2023 - 01:44:48 CST)
- Interactive MD - 3DSystems Touch Trollmann, Marius (Sun Nov 26 2023 - 07:19:56 CST)
- SASA Cutoff Value for Residues on Protein Surface Kevin Lin (Tue Nov 21 2023 - 18:08:58 CST)
- Issue assigning impropers with topotools SHIVAM TIWARI (Tue Nov 21 2023 - 00:21:27 CST)
- Re: How to evaluate VMD performance properly? Vermaas, Josh (Mon Nov 20 2023 - 08:57:13 CST)
- How to evaluate VMD performance properly? Frederico De Santana Pontes (Mon Nov 20 2023 - 06:03:40 CST)
- Smoothing PBC jumps across PBC Patrick Charchar (Wed Nov 15 2023 - 23:27:39 CST)
- Commands runs manually but not as a script Bill McIntyre (Fri Nov 03 2023 - 10:58:11 CDT)
- STRIDE breaks after 100,000 protein atoms Vasista (Wed Nov 01 2023 - 06:36:38 CDT)
- Error on VMD Tkconsole : syntax error near unexpected token Yixin Chen (Tue Oct 31 2023 - 10:55:22 CDT)
- VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Mon Oct 30 2023 - 19:13:02 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Victor Kwan (Tue Oct 31 2023 - 16:44:58 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Tue Oct 31 2023 - 17:05:44 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Victor Kwan (Tue Oct 31 2023 - 20:31:14 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Tue Oct 31 2023 - 21:41:13 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Diego Gomes (Thu Nov 02 2023 - 14:41:33 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Thu Nov 02 2023 - 15:01:03 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Axel Kohlmeyer (Thu Nov 02 2023 - 16:27:46 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Thu Nov 02 2023 - 16:46:05 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Axel Kohlmeyer (Thu Nov 02 2023 - 16:54:02 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Fri Dec 08 2023 - 16:17:17 CST)
- Re: VMD openGL over ssh from a server with NVIDIA Paweł Kędzierski (Fri Nov 03 2023 - 02:36:17 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Gianluca Interlandi (Tue Oct 31 2023 - 17:05:44 CDT)
- Re: VMD openGL over ssh from a server with NVIDIA Victor Kwan (Tue Oct 31 2023 - 16:44:58 CDT)
- MacOS VMD1.9.4.a55 crashes- malloc: can't allocate region Subha Kalyaanamoorthy (Mon Oct 30 2023 - 11:01:09 CDT)
- Molefacture 2 does not generate angles & dihedrals Paweł Kędzierski (Mon Oct 30 2023 - 02:54:26 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Mon Oct 30 2023 - 07:22:18 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Jirui Yang (Mon Oct 30 2023 - 12:20:33 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Diego Gomes (Thu Nov 02 2023 - 12:21:42 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Fri Nov 03 2023 - 07:32:57 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Fri Nov 10 2023 - 02:43:50 CST)
- Re: Molefacture 2 does not generate angles & dihedrals Diego Gomes (Mon Nov 13 2023 - 10:41:45 CST)
- Re: Molefacture 2 does not generate angles & dihedrals Jirui Yang (Mon Oct 30 2023 - 12:20:33 CDT)
- Re: Molefacture 2 does not generate angles & dihedrals Pawel Kedzierski (Mon Oct 30 2023 - 07:22:18 CDT)
- Creating Dummy Atoms in VMD Using TCL Script Kevin Lin (Fri Oct 27 2023 - 15:16:45 CDT)
- ffTK Tabs for Just Dihedral Optimization Can I Just Use Scan and Opt Tabs Inquiry? Joel Subach (Fri Oct 27 2023 - 11:18:02 CDT)
- ffTK Scan Torsions Scan +/-and Step Size Inquiry which are Best Values? Joel Subach (Fri Oct 27 2023 - 11:12:38 CDT)
- Re: ffTK Opt Torsions Tab Hysteresis Problem in the QM Calculation Inquiry or Phase Periodicity error? Joel Subach (Thu Oct 26 2023 - 11:09:03 CDT)
- Tcl/Tk misbehave after upgrading MacOS to Sonoma (14.0) Cassiano Langini (Mon Oct 23 2023 - 05:17:56 CDT)
- Script to Build Cyclic Peptides Bill McIntyre (Sun Oct 22 2023 - 17:38:30 CDT)
- Re: Script to Build Cyclic Peptides Josh (Mon Oct 23 2023 - 07:57:20 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Tue Oct 24 2023 - 00:52:02 CDT)
- Re: Script to Build Cyclic Peptides Vermaas, Josh (Tue Oct 24 2023 - 08:29:48 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Wed Oct 25 2023 - 06:20:02 CDT)
- Re: Script to Build Cyclic Peptides Josh (Wed Oct 25 2023 - 09:01:37 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Thu Oct 26 2023 - 12:34:12 CDT)
- Re: Script to Build Cyclic Peptides Josh (Thu Oct 26 2023 - 13:53:06 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Sat Oct 28 2023 - 18:13:51 CDT)
- Re: Script to Build Cyclic Peptides Vermaas, Josh (Mon Oct 30 2023 - 07:39:24 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Mon Oct 30 2023 - 10:58:32 CDT)
- Re: Script to Build Cyclic Peptides Patrick Charchar (Thu Oct 26 2023 - 17:31:26 CDT)
- Re: Script to Build Cyclic Peptides Patrick Charchar (Thu Oct 26 2023 - 19:02:23 CDT)
- Re: Script to Build Cyclic Peptides Vermaas, Josh (Fri Oct 27 2023 - 17:15:02 CDT)
- Re: Script to Build Cyclic Peptides Bill McIntyre (Tue Oct 24 2023 - 00:52:02 CDT)
- Re: Script to Build Cyclic Peptides Josh (Mon Oct 23 2023 - 07:57:20 CDT)
- ffTK Opt Torsions Refine Section i.e. PERIODICITY, PHASE SHIFT Values? Joel Subach (Sun Oct 22 2023 - 07:21:10 CDT)
- ffTK Parameter Selection i.e. just Scan and Opt Torsion Selection Viable? Joel Subach (Wed Oct 18 2023 - 06:13:50 CDT)
- Re: ffTK Parameter Selection i.e. just Scan and Opt Torsion Selection Viable? Joel Subach (Tue Feb 20 2024 - 06:09:32 CST)
- Update structure on-the-fly Raman Preet Singh (Mon Oct 16 2023 - 02:18:14 CDT)
- VMD APBS Plugin Issues Kevin Lin (Sun Oct 15 2023 - 19:15:01 CDT)
- ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Fri Oct 13 2023 - 06:52:49 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Fri Oct 13 2023 - 21:49:24 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Sat Oct 14 2023 - 08:47:54 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Sun Oct 15 2023 - 11:19:51 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Fri Oct 20 2023 - 09:19:14 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Josh (Fri Oct 20 2023 - 09:32:45 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Fri Oct 20 2023 - 09:39:13 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Fri Oct 20 2023 - 16:45:25 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Sat Oct 21 2023 - 07:09:38 CDT)
- Re: ffTK FATAL ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Gumbart, JC (Fri Oct 13 2023 - 21:49:24 CDT)
- ERROR: UNABLE TO FIND IMPROPER PARAMETERS Inquiry Joel Subach (Wed Oct 11 2023 - 09:05:22 CDT)
- Total H-bond occupancy analysis Neena Susan Eappen (Mon Sep 25 2023 - 14:14:33 CDT)
- <<cionize on macOS error>> ROPN-PALACIOS G. G. (Sun Sep 24 2023 - 06:57:26 CDT)
- Re: <<cionize on macOS error>> Castro Martinez, Camila (Mon Sep 25 2023 - 01:49:52 CDT)
- Re: <<cionize on macOS error>> Ropón-Palacios G. (Mon Sep 25 2023 - 14:52:05 CDT)
- Re: Re: <<cionize on macOS error>> Axel Kohlmeyer (Mon Sep 25 2023 - 15:49:35 CDT)
- Re: Re: <<cionize on macOS error>> Ropón-Palacios G. (Mon Sep 25 2023 - 15:59:39 CDT)
- Re: Re: <<cionize on macOS error>> Axel Kohlmeyer (Mon Sep 25 2023 - 16:04:06 CDT)
- Re: Re: <<cionize on macOS error>> Ropón-Palacios G. (Mon Sep 25 2023 - 16:24:51 CDT)
- Re: Re: <<cionize on macOS error>> Diego Gomes (Mon Sep 25 2023 - 17:13:46 CDT)
- Re: Re: <<cionize on macOS error>> Axel Kohlmeyer (Mon Sep 25 2023 - 17:14:53 CDT)
- Re: Re: <<cionize on macOS error>> Hasdemir, Hale Siir (Mon Sep 25 2023 - 17:20:19 CDT)
- Re: Re: <<cionize on macOS error>> Ropón-Palacios G. (Mon Sep 25 2023 - 17:23:40 CDT)
- Re: Re: <<cionize on macOS error>> Ropón-Palacios G. (Mon Sep 25 2023 - 17:32:31 CDT)
- Re: <<cionize on macOS error>> Ropón-Palacios G. (Mon Sep 25 2023 - 14:52:05 CDT)
- Re: <<cionize on macOS error>> Castro Martinez, Camila (Mon Sep 25 2023 - 01:49:52 CDT)
- <<measure command>> Ropón-Palacios G. (Thu Sep 21 2023 - 16:21:11 CDT)
- Angle between a vector and a plane Castro Martinez, Camila (Wed Sep 20 2023 - 02:53:52 CDT)
- Generate Trajectory using Gaussian Cube Files Jia-Yang Lim (Tue Sep 19 2023 - 23:51:39 CDT)
- Viewing Van der Waals bonds of a protein ligand in complex inquiry Joel Subach (Sun Sep 10 2023 - 07:38:30 CDT)
- reading chain labels from amber prmtop Baker, Joseph (Fri Sep 08 2023 - 07:15:42 CDT)
- Error in porcupine plot Sanjay Kumar Paul (Thu Aug 31 2023 - 04:06:46 CDT)
- How to shortening bonds length in a molecule ? maxim todoru (Thu Aug 31 2023 - 01:28:26 CDT)
- Issues with urea and autopsf Simone Gargano (Tue Aug 29 2023 - 07:17:49 CDT)
- Pulling and Anchoring residues Jeevan Patra (Wed Aug 16 2023 - 06:33:45 CDT)
- define custom colours for posX gradient Yogesh Sharma (Wed Aug 16 2023 - 06:30:49 CDT)
- Unable to use plots with QwikMD Javier Badilla (Fri Aug 11 2023 - 08:09:42 CDT)
- FATAL ERROR: UNABLE TO FIND ANGLE PARAMETERS FOR HB2 CT1 NH3 (ATOMS 1 5 8) SONAL GAHLAWAT (Thu Aug 10 2023 - 13:32:17 CDT)
- Diffusion Coefficient calculation Nakshatra Upadhyay (Wed Aug 09 2023 - 11:25:19 CDT)
- Custom selection variable Bart Bruininks (Tue Aug 08 2023 - 09:12:23 CDT)
- QwikMD - Steered Molecular Dynamics Query Jeevan Patra (Sun Jul 30 2023 - 09:18:11 CDT)
- ffTK Load Dihedral Scan Output for Visualization Inquiry Joel Subach (Sun Jul 30 2023 - 07:05:50 CDT)
- Drawing ellipsoids Johannes Haataja (Tue Jul 25 2023 - 14:10:29 CDT)
- converting NAMD trajectories GAGANJYOT KAUR BAKSHI (Tue Jul 25 2023 - 01:46:59 CDT)
- Re: keeping two ligands in a box Vermaas, Josh (Sun Jul 23 2023 - 03:45:49 CDT)
- keeping two ligands in a box Ackad, Edward (Sat Jul 22 2023 - 09:00:19 CDT)
- Constant pH MD with NAMD Hoang, Oanh Tu (Wed Jul 19 2023 - 08:15:22 CDT)
- FW: VMD Programmer Position available at TCBG/UIUC Tajkhorshid, Emad (Thu Jul 13 2023 - 09:20:35 CDT)
- (no subject) Alexei Rossokhin (Mon Jul 10 2023 - 07:26:50 CDT)
- VMD error - molefacture Hasdemir, Hale Siir (Fri Jul 07 2023 - 10:00:29 CDT)
- Problem with converting from lammpstrj to dcd using CatDCD Zuzanna Jedlinska (Fri Jul 07 2023 - 08:54:50 CDT)
- covalent bond Alexei Rossokhin (Wed Jul 05 2023 - 09:18:37 CDT)
- CHARMM36 and water: can the H-H "bond" be added to the wat.top file used by solvate.tcl? Cindy Cregier (Wed Jul 05 2023 - 01:14:37 CDT)
- OH- Drude parameters Shah, Tanooj (Mon Jul 03 2023 - 17:09:42 CDT)
- Fix the Header of DCD File After Merging Multiple Trajectories Efthymiou, Christos (Mon Jul 03 2023 - 04:19:11 CDT)
- Re: Concatenate DCD Files with Different Numbers of Atoms Nick Bayhi (Sat Jul 01 2023 - 17:32:29 CDT)
- Concatenate DCD Files with Different Numbers of Atoms Efthymiou, Christos (Sat Jul 01 2023 - 16:04:35 CDT)
- location of light sources in vmd Yogesh Sharma (Mon Jun 26 2023 - 01:58:45 CDT)
- Has anyone successfully executed ORCA instead of Gaussian for ffTK? Joel Subach (Sun Jun 25 2023 - 06:28:49 CDT)
- network analysis for gromacs jing liang (Sat Jun 24 2023 - 02:44:51 CDT)
- Re: ffTK Opt Torsions .log file input Inquiry Joel Subach (Thu Jun 22 2023 - 07:43:40 CDT)
- network analysis on Windows 11 jing liang (Thu Jun 22 2023 - 04:51:45 CDT)
- ffTK Scan Torsions Generate Dihedral Scan Input OUTPUT Inquiry Joel Subach (Mon Jun 19 2023 - 09:50:49 CDT)
- Converting namd trajectory to desmond trajectory GAGANJYOT KAUR BAKSHI (Tue Jun 13 2023 - 14:56:58 CDT)
- ORCA within ffTK Dihedral Angle Optimization Inquiry Joel Subach (Sat Jun 10 2023 - 05:11:26 CDT)
- Two postdoctoral positions available at the computational core of the Pittsburgh Center for HIV Protein Interactions External Juan R. Perilla (Thu Jun 08 2023 - 08:37:45 CDT)
- Tachyon dat file as input? Shayna Hilburg (Thu Jun 01 2023 - 01:09:47 CDT)
- Convert trajectory GAGANJYOT KAUR BAKSHI (Wed May 24 2023 - 21:08:06 CDT)
- Reminder: Hands-On Workshop On Computational Biophysics in Auburn, AL Mariano Spivak (Fri May 19 2023 - 12:31:05 CDT)
- VMD DMS plugin Siyoung Kim (Mon May 15 2023 - 09:08:38 CDT)
- VMD DMS plugin Siyoung Kim (Mon May 15 2023 - 09:03:32 CDT)
- version 1.9.3 elham sattarinezhad (Fri May 12 2023 - 09:31:35 CDT)
- Trajectory Smoothing and length of hydrogen bonds Gabby Leonard (Thu May 11 2023 - 14:54:23 CDT)
- Question about using fftk with files from QM calculations from Gaussian 16 Matteo Lambrughi (Thu May 11 2023 - 02:52:31 CDT)
- VMD BFEE namdbin error Janni Christensen (Tue May 09 2023 - 02:03:44 CDT)
- Cartoon representation in VMD with amber netcd file Hoang, Oanh Tu (Fri May 05 2023 - 05:41:15 CDT)
- Restarting a simulation GAGANJYOT KAUR BAKSHI (Wed May 03 2023 - 06:29:22 CDT)
- Missing Bond at Periodic Boundary Reza Namakian (Mon May 01 2023 - 09:04:06 CDT)
- Random Sudden Increase in RMSD Near End of Simulation Efthymiou, Christos (Fri Apr 28 2023 - 01:58:28 CDT)
- Formatting of text in label Roshan Shrestha (Fri Apr 21 2023 - 09:14:41 CDT)
- Selecting atom of given residue in namdenergy plugin Francesco Pietra (Wed Apr 19 2023 - 05:39:58 CDT)
- Re: Re: Executing ORCA within ffTK Opt Geometry Tab Inquiry Joel Subach (Tue Apr 18 2023 - 11:41:35 CDT)
- Re: Executing ORCA within ffTK Opt Geometry Tab Inquiry Joel Subach (Tue Apr 18 2023 - 07:53:13 CDT)
- Combining multiple psf into one for collagen protein SONAL GAHLAWAT (Mon Apr 17 2023 - 11:42:20 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Wed Apr 12 2023 - 09:30:56 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Thu Apr 13 2023 - 05:05:45 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Thu Apr 13 2023 - 08:11:14 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Fri Apr 14 2023 - 02:41:53 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Fri Apr 14 2023 - 03:57:24 CDT)
- Re: Python crash VMD1.9.4 John Stone (Mon Apr 17 2023 - 11:04:54 CDT)
- Re: Python crash VMD1.9.4 Josh Vermaas (Mon Apr 17 2023 - 12:59:42 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Tue Apr 18 2023 - 03:27:39 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Tue Apr 18 2023 - 04:46:06 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Tue Apr 18 2023 - 08:10:33 CDT)
- Re: Python crash VMD1.9.4 Josh Vermaas (Tue Apr 18 2023 - 09:20:51 CDT)
- Re: Python crash VMD1.9.4 Daipayan Sarkar (Tue Apr 18 2023 - 10:25:23 CDT)
- Re: Python crash VMD1.9.4 Vermaas, Josh (Thu Apr 13 2023 - 08:11:14 CDT)
- Re: Python crash VMD1.9.4 Dominique Mias-Lucquin (Thu Apr 13 2023 - 05:05:45 CDT)
- Python crash VMD1.9.4 Dominique Mias-Lucquin (Wed Apr 12 2023 - 08:02:19 CDT)
- Create bonds in VMD Rajorshi Chattopadhyay (Tue Apr 11 2023 - 15:21:54 CDT)
- Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 07:47:02 CDT)
- Re: Gaussian09 install on macOS Inquiry Axel Kohlmeyer (Tue Apr 11 2023 - 08:31:28 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 08:35:27 CDT)
- Re: Gaussian09 install on macOS Inquiry Giacomo Fiorin (Tue Apr 11 2023 - 10:03:39 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 10:10:13 CDT)
- Re: Gaussian09 install on macOS Inquiry Giacomo Fiorin (Tue Apr 11 2023 - 10:29:57 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 10:37:57 CDT)
- Re: Gaussian09 install on macOS Inquiry Gumbart, JC (Tue Apr 11 2023 - 21:36:48 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Tue Apr 11 2023 - 23:19:34 CDT)
- Re: Gaussian09 install on macOS Inquiry Gumbart, JC (Wed Apr 12 2023 - 01:03:13 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Wed Apr 12 2023 - 01:28:05 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Thu Apr 13 2023 - 11:06:06 CDT)
- Re: Gaussian09 install on macOS Inquiry Gumbart, JC (Thu Apr 13 2023 - 12:14:05 CDT)
- Re: Gaussian09 install on macOS Inquiry Joel Subach (Fri Apr 14 2023 - 02:49:28 CDT)
- Re: Gaussian09 install on macOS Inquiry Axel Kohlmeyer (Tue Apr 11 2023 - 08:31:28 CDT)
- Re: fftk-Tutorial Writing psf and pdb files from a CGenFF .str File Inquiry Joel Subach (Fri Apr 07 2023 - 07:24:56 CDT)
- Render straight to ffmpeg/NVENC ? Diego Gomes (Wed Apr 05 2023 - 15:08:10 CDT)
- Node selection in network view GAGANJYOT KAUR BAKSHI (Tue Apr 04 2023 - 00:29:10 CDT)
- vmd mpi parallel rendering with SLURM René Hafner TUK (Thu Mar 30 2023 - 02:28:18 CDT)
- Re: vmd mpi parallel rendering with SLURM John Stone (Wed Apr 05 2023 - 23:38:27 CDT)
- Re: vmd mpi parallel rendering with SLURM Chris Taylor (Thu Apr 06 2023 - 21:14:08 CDT)
- Re: vmd mpi parallel rendering with SLURM René Hafner TUK (Sun Apr 09 2023 - 10:02:02 CDT)
- CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu Chris Taylor (Sun Apr 09 2023 - 22:07:14 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu John Stone (Mon Apr 10 2023 - 00:58:11 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu Chris Taylor (Mon Apr 10 2023 - 20:08:42 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu John Stone (Mon Apr 17 2023 - 11:13:20 CDT)
- Re: CUDA error: an illegal memory access was encountered, CUDAQuickSurf.cu Chris Taylor (Mon Apr 17 2023 - 22:40:59 CDT)
- Re: vmd mpi parallel rendering with SLURM Chris Taylor (Thu Apr 06 2023 - 21:14:08 CDT)
- Re: vmd mpi parallel rendering with SLURM John Stone (Wed Apr 05 2023 - 23:38:27 CDT)
- Cannot open parm7 file through tcl script, but can open via graphic interface Fernando Amrein (Mon Mar 27 2023 - 19:15:54 CDT)
- Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Mon Mar 27 2023 - 07:25:41 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:04:16 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:06:57 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Tue Mar 28 2023 - 18:28:01 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:54:11 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Tue Mar 28 2023 - 19:30:06 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 19:31:17 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Joel Subach (Tue Mar 28 2023 - 19:33:46 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:06:57 CDT)
- Re: Re: ffTK Opt Torsions Refine Section EDIT ENTRY SECTION PROBLEM Gumbart, JC (Tue Mar 28 2023 - 18:04:16 CDT)
- Atoms dropped on running AutoPSF Priyanshu Gupta (Fri Mar 24 2023 - 12:52:46 CDT)
- Show tcl console selections in VMD graphical display Alexandre Suman de Araújo (Thu Mar 23 2023 - 04:06:05 CDT)
- Select waters inside cylinder ROPÓN-PALACIOS G. (Tue Mar 21 2023 - 16:25:47 CDT)
- calculation of rotation angle Sangita Kachhap (Tue Mar 21 2023 - 13:05:05 CDT)
- Re: No ffTK .gau Extension in Determine File Type in VMD for Visualization Problem? Joel Subach (Fri Mar 17 2023 - 16:04:23 CDT)
- Re: Re: No ffTK .gau Extension in Determine File Type in VMD for Visualization Problem? Gumbart, JC (Wed Mar 22 2023 - 16:40:10 CDT)
- PDB with CONECT records Raman Preet Singh (Tue Mar 14 2023 - 08:18:34 CDT)
- ffTK Inquiry Joel Subach (Mon Mar 13 2023 - 20:28:51 CDT)
- Two questions: reordering molecule IDs and deleting frames with TCL commands Strahs, Dr. Daniel Bernard (Sat Mar 11 2023 - 17:03:09 CST)
- Error with Catdcd Efthymiou, Christos (Tue Mar 07 2023 - 16:47:47 CST)
- can't build VMD on MacOs Ventura: use of undeclared identifier 'msms' Alexander Beerhoff (Tue Mar 07 2023 - 08:56:42 CST)
- helix content colvar for a 3-10 helix Diship Srivastava (Tue Mar 07 2023 - 00:46:08 CST)
- Autopsf Not Generating Atom Numbers Beyond 99999 Stefan Lyne Oliver (Wed Mar 01 2023 - 13:41:26 CST)
- New Cartoon representation - Ubuntu 16.zdsmith_at_gmail.com (Wed Mar 01 2023 - 12:09:48 CST)
- Font size of the colorbar legends and rotation of the colorscale bar bibhab majumdar (Sun Feb 26 2023 - 22:44:56 CST)
- Rotation of the color scale bar in VMD bibhab majumdar (Sun Feb 26 2023 - 22:21:11 CST)
- Set constant length scale to molecules in boxes of different sizes Pacci Evaristo, Felipe Fabricio (Sun Feb 26 2023 - 14:39:37 CST)
- Question about NMD file visualization Sruthi Sudhakar (Sun Feb 26 2023 - 04:18:50 CST)
- Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: ‘OSPModel’ does not name a typ Alexander Beerhoff (Thu Feb 23 2023 - 22:47:16 CST)
- Re: Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: ‘OSPModel’ does not name a typ Axel Kohlmeyer (Thu Feb 23 2023 - 23:55:57 CST)
- Re: Fwd: Problem building vmd with ospray - OSPRayRenderer.h error: ‘OSPModel’ does not name a typ Vermaas, Josh (Fri Feb 24 2023 - 00:19:28 CST)
- Problem with make_trajectory_movie_files script for lammps trajectory with -dispdev text Marin Paolo Virgile Vatin (Fri Feb 17 2023 - 04:46:15 CST)
- VMD 64-bit Windows OSPRay Initialization Error Possible Fix Mortimer Hemmit (Tue Feb 14 2023 - 16:12:48 CST)
- Viewing post script images GAGANJYOT KAUR BAKSHI (Mon Feb 13 2023 - 05:43:29 CST)
- ChatGPT knows basic VMD scripting... John Stone (Sun Feb 12 2023 - 22:45:01 CST)
- VMD on Windows 11 Pol Garcia-Segura (Wed Feb 08 2023 - 11:58:56 CST)
- BFEE Francesco Coppola (Wed Feb 08 2023 - 11:33:42 CST)
- 1-Nanotube Zigzag and 2-saving coordinates problem srikasi.qut_at_gmail.com (Tue Feb 07 2023 - 00:00:41 CST)
- Uninstalling VMD Sarthak Mohanty (Mon Feb 06 2023 - 01:40:43 CST)
- fftk Improper fitting Rizal Sinaga (Thu Feb 02 2023 - 18:12:52 CST)
- How to change stride of trajectory initially loaded in CaFE Plugin Efthymiou, Christos (Thu Feb 02 2023 - 17:45:36 CST)
- Nanopore Sequencing Tutorial Problem Andrew Doig (Thu Feb 02 2023 - 19:07:57 CST)
- Image render in VMD GAGANJYOT KAUR BAKSHI (Tue Jan 31 2023 - 05:31:53 CST)
- Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Mon Jan 30 2023 - 20:16:39 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Josh Vermaas (Tue Jan 31 2023 - 08:58:37 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Tue Jan 31 2023 - 13:16:41 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Vermaas, Josh (Tue Jan 31 2023 - 14:04:57 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Tue Jan 31 2023 - 16:48:10 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ John Stone (Tue Jan 31 2023 - 22:30:35 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Wed Feb 01 2023 - 01:10:25 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Vermaas, Josh (Wed Feb 01 2023 - 08:23:56 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Wed Feb 01 2023 - 13:51:43 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Brendan Dennis (Tue Jan 31 2023 - 13:16:41 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Rudy Richardson (Tue Jan 31 2023 - 10:22:04 CST)
- Re: Running VMD 1.9.4alpha on newer GPUs that require CUDA 11+ and OptiX 7+ Josh Vermaas (Tue Jan 31 2023 - 08:58:37 CST)
- bash calling multiple python scripts that open vmd pauses Ryan Woltz (Sat Jan 21 2023 - 04:30:13 CST)
- fftk, charge optimization, fragmentation Vardan Vardanyan (Thu Jan 19 2023 - 13:39:33 CST)
- get "x y z" from smoothed coordinates Diego Gomes (Wed Jan 18 2023 - 15:20:37 CST)
- Regarding Network Analysis GAGANJYOT KAUR BAKSHI (Wed Jan 18 2023 - 02:01:29 CST)
- PCA/NMA/Secondary structure analysis with bigdcd Hocine el khaoudi enyoury (Tue Jan 17 2023 - 03:53:21 CST)
- Vmd Hardware Requirements long MD visual/analysis Hocine el khaoudi enyoury (Mon Jan 16 2023 - 07:27:18 CST)
- TCL Script for PCA? Efthymiou, Christos (Mon Jan 09 2023 - 15:24:06 CST)
- Aligning of ions and DNA angad sharma (Sun Jan 08 2023 - 03:00:11 CST)
- measure sasa algorithm? Alvea Tasneem (Fri Jan 06 2023 - 11:25:23 CST)
- Labels on top of atoms Pierpaolo Pravatto (Mon Jan 02 2023 - 02:27:13 CST)
- coloring Fateme Aghaei (Fri Dec 30 2022 - 15:45:45 CST)
- << Centering/aligning several molecules >> I. Camps (Thu Dec 29 2022 - 13:26:04 CST)
- << thresholds for drawing bonds >> I. Camps (Wed Dec 21 2022 - 13:49:48 CST)
- (no subject) Ivan Franzoni (Tue Dec 20 2022 - 12:01:20 CST)
- Error in merging two PSFs and PDBs using a TCL script Sarthak Mohanty (Fri Dec 16 2022 - 11:59:06 CST)
- BFEE calculations for protein-protein complexes Deepshikha Ghosh 19310001 (Mon Dec 12 2022 - 04:23:41 CST)
- Issue install VMD 1.9.3 Spack Arsene Marian Alain (Mon Dec 05 2022 - 01:34:27 CST)
- Question about code Raag Saluja (Sun Dec 04 2022 - 13:43:40 CST)
- Generating single amino acid using PSFGEN Huang, Caleb (Fri Dec 02 2022 - 16:23:54 CST)
- Unknown variable modifier. while running vmd Diship Srivastava (Tue Nov 29 2022 - 23:33:40 CST)
- vmd-l@ks.uiuc.edu angad sharma (Tue Nov 22 2022 - 05:06:23 CST)
- Listing solvent accessible surface area per residue Bill McIntyre (Sat Nov 19 2022 - 13:55:14 CST)
- NewCartoon or NewRibbons Secondary Structure methods don't work with latest updated Mesa 22.2.3 David Carrasco de Busturia (Sat Nov 19 2022 - 05:48:51 CST)
- Residence time calculation angad sharma (Thu Nov 17 2022 - 23:21:43 CST)
- C atom projection calculation Kodituwakku,Dimuthu Nirmani (Wed Nov 16 2022 - 22:23:23 CST)
- Coloring/material of ply files Bart Bruininks (Tue Nov 15 2022 - 09:29:59 CST)
- Atomselect entire water molecule using pbwithin Huang, Caleb (Fri Nov 11 2022 - 14:51:53 CST)
- Hbonds details every frame Nick Bayhi (Thu Nov 10 2022 - 16:57:02 CST)
- Parametrization of sulfur-containing compound with ffTK Trollmann, Marius (Thu Nov 10 2022 - 10:36:32 CST)
- Residence time of ions angad sharma (Thu Nov 10 2022 - 00:32:40 CST)
- MacOS VMD1.9.4.a55 crashes- malloc: can't allocate region Subha Kalyaanamoorthy (Wed Nov 09 2022 - 11:36:29 CST)
- Topotools "guessangles" not assigning angles utku.ozkan_at_bilkent.edu.tr (Wed Nov 09 2022 - 00:05:50 CST)
- Error with PCA Calculation using Normal Mode Wizard Efthymiou, Christos (Tue Nov 08 2022 - 12:06:45 CST)
- Linux HiDPI screens FX (Mon Nov 07 2022 - 08:33:18 CST)
- can not visualize bond in vmd Chunli Yan (Fri Nov 04 2022 - 12:49:26 CDT)
- visualisation of molecular orbitals in VMD jing liang (Fri Nov 04 2022 - 06:37:41 CDT)
- Extracting hydrogen bond information of water Ata Madanchi (Thu Nov 03 2022 - 14:28:43 CDT)
- VMD 1.9.4.a53 crashes on windows 11 Atanu Acharya (Thu Nov 03 2022 - 11:01:49 CDT)
- Re: VMD 1.9.4.a53 crashes on windows 11 John Stone (Thu Nov 03 2022 - 13:44:56 CDT)
- 3d visualization VMD / NVIDIA / Linux Vlad Cojocaru (Wed Nov 02 2022 - 05:26:47 CDT)
- Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Tue Nov 01 2022 - 22:09:45 CDT)
- RE: Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Fri Nov 04 2022 - 18:52:47 CDT)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Sun Nov 06 2022 - 15:28:50 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Mon Nov 07 2022 - 22:49:33 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Daipayan Sarkar (Tue Nov 08 2022 - 01:19:15 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Tue Nov 08 2022 - 12:00:56 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Daipayan Sarkar (Tue Nov 08 2022 - 15:45:28 CST)
- RE: RE: Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Wed Nov 09 2022 - 18:05:03 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Wed Nov 09 2022 - 18:22:54 CST)
- Re: RE: Simple MDFF Tutorial - 1ake does not fit into map Gumbart, JC (Sun Nov 06 2022 - 15:28:50 CST)
- RE: Simple MDFF Tutorial - 1ake does not fit into map Stefan Lyne Oliver (Fri Nov 04 2022 - 18:52:47 CDT)
- Question about running script for hydrogen bonding analysis Daniel Adrion (Sat Oct 29 2022 - 09:04:33 CDT)
- Re: Obtaining a list of surface exposed residues Bill McIntyre (Fri Oct 28 2022 - 02:36:24 CDT)
- helix orientation angle CPMAS Chen (Thu Oct 27 2022 - 20:55:45 CDT)
- QMMM Update Mcguire, Kelly (Fri Oct 21 2022 - 11:41:42 CDT)
- QMMM Update Mcguire, Kelly (Fri Oct 21 2022 - 11:36:06 CDT)
- QMMM Update Mcguire, Kelly (Thu Oct 20 2022 - 20:29:15 CDT)
- Two Proteins Question Mcguire, Kelly (Wed Oct 19 2022 - 16:23:37 CDT)
- Use VMD to produce images and videos to sell Henrique Fernandes (Sun Oct 16 2022 - 10:02:52 CDT)
- Protein breaks after automatic psf builder Neeraj Dhandia (Fri Oct 14 2022 - 06:45:08 CDT)
- When should I use NTER and NNEU as a patch? Derman Baştürk (Tue Oct 11 2022 - 23:38:26 CDT)
- Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 13:33:08 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Tue Oct 11 2022 - 14:05:57 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 14:15:52 CDT)
- Re: Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Tue Oct 11 2022 - 14:33:49 CDT)
- Re: Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 19:45:48 CDT)
- Re: Re: Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Wed Oct 12 2022 - 03:02:29 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Efthymiou, Christos (Tue Oct 11 2022 - 14:15:52 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Georcki Ropon (Thu Oct 13 2022 - 14:31:37 CDT)
- Re: Using BigDCD on Simulation Files Located on Mapped Network Drive Norbert Straeter (Tue Oct 11 2022 - 14:05:57 CDT)
- How to get a file of trajectories and velocities in VMD? Eduardo Estevez (Mon Oct 10 2022 - 16:53:39 CDT)
- Losing atoms while solvating Rajat Chakraborty (Mon Oct 10 2022 - 13:06:00 CDT)
- QwikMD Error in VMD 1.9.4a53 on Windows 10 Computer Efthymiou, Christos (Mon Oct 10 2022 - 12:04:46 CDT)
- Mopac VMD McGuire, Kelly (Sun Oct 09 2022 - 15:13:35 CDT)
- Installing VMD store using tkconsole in VMD in Windows 10 Madhavan Narayanan (Sat Oct 08 2022 - 11:31:32 CDT)
- Query regarding WISP extension in VMD Sruthi Sudhakar (Thu Oct 06 2022 - 01:31:58 CDT)
- Extracting Voxel-based or STL from QuickSurf Representation Max Win (Wed Oct 05 2022 - 15:13:51 CDT)
- VMD disables audio? Strahs, Dr. Daniel Bernard (Wed Oct 05 2022 - 11:50:17 CDT)
- Maximum Stride Possible for Publishable Results Efthymiou, Christos (Mon Oct 03 2022 - 13:50:17 CDT)
- Re: Maximum Stride Possible for Publishable Results Ashar Malik (Mon Oct 03 2022 - 23:47:24 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Tue Oct 04 2022 - 12:43:17 CDT)
- Re: Maximum Stride Possible for Publishable Results Giacomo Fiorin (Tue Oct 04 2022 - 13:31:28 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Wed Oct 05 2022 - 13:30:00 CDT)
- Re: Maximum Stride Possible for Publishable Results Axel Kohlmeyer (Wed Oct 05 2022 - 14:42:34 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Fri Oct 07 2022 - 13:34:53 CDT)
- Re: Maximum Stride Possible for Publishable Results Axel Kohlmeyer (Fri Oct 07 2022 - 13:42:45 CDT)
- Re: Maximum Stride Possible for Publishable Results Giacomo Fiorin (Fri Oct 07 2022 - 16:19:31 CDT)
- Re: Maximum Stride Possible for Publishable Results Efthymiou, Christos (Tue Oct 04 2022 - 12:43:17 CDT)
- Re: Maximum Stride Possible for Publishable Results Ashar Malik (Mon Oct 03 2022 - 23:47:24 CDT)
- Overriding default bond heuristics Raman Preet Singh (Mon Oct 03 2022 - 12:50:36 CDT)
- Re: Label all atoms using script Raman Preet Singh (Sat Oct 01 2022 - 11:40:20 CDT)
- Label all atoms using script Raman Preet Singh (Sat Oct 01 2022 - 08:55:36 CDT)
- How to calculate number of water molecules close to a nanostructure Eduardo Estevez (Sat Oct 01 2022 - 06:52:56 CDT)
- VMD1.9.4a57 crashes when main console moved to second display Chan, Matthew (Thu Sep 29 2022 - 16:37:35 CDT)
- dealing with large pdb files Morteza Chehel Amirani (Tue Sep 27 2022 - 15:50:47 CDT)
- INITIALIZATION ERROR --> OSPRay not yet initialized - WIN64, version 1.9.4a53 Chris Taylor (Mon Sep 26 2022 - 18:31:01 CDT)
- Part of my molecule isn't rendering in New Cartoon Nick Bayhi (Fri Sep 23 2022 - 16:22:49 CDT)
- Period images not appearing Ackad, Edward (Fri Sep 23 2022 - 13:29:45 CDT)
- Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Fri Sep 23 2022 - 05:14:30 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 07:54:53 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 15:36:58 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Fri Sep 23 2022 - 21:19:26 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Vermaas, Josh (Sat Sep 24 2022 - 12:28:36 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Sat Sep 24 2022 - 17:20:27 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Sat Sep 24 2022 - 21:22:13 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Vermaas, Josh (Sun Sep 25 2022 - 13:29:05 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Amanda Jenkins (Sun Sep 25 2022 - 21:35:55 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Michael Robinson (Sun Sep 25 2022 - 23:58:49 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Vermaas, Josh (Mon Sep 26 2022 - 08:30:26 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Michael Robinson (Mon Sep 26 2022 - 08:53:11 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 15:36:58 CDT)
- Re: Ramachandran Dihedral Angles Suspiciously Constant Josh Vermaas (Fri Sep 23 2022 - 07:54:53 CDT)
- Calculating time variation of potential. Pranjal Sur (Fri Sep 23 2022 - 04:47:39 CDT)
- tcl measure bond length script Ryan Woltz (Tue Sep 13 2022 - 17:25:08 CDT)
- Installation problem on MacOS Monterey Suman Chakrabarty (Sun Sep 11 2022 - 12:16:22 CDT)
- Multiple Programmer Positions to develop VMD and NAMD Tajkhorshid, Emad (Sun Sep 11 2022 - 10:15:14 CDT)
- Rendering structures with Hydrogen Bonds using Tachyon Saumyak Mukherjee (Fri Sep 09 2022 - 08:18:21 CDT)
- Most relevant VMD install Klimkowski, V (Tue Sep 06 2022 - 20:52:51 CDT)
- Re: Most relevant VMD install Giacomo Fiorin (Wed Sep 07 2022 - 07:55:56 CDT)
- Re: Most relevant VMD install Josh Vermaas (Wed Sep 07 2022 - 07:56:34 CDT)
- Re: Most relevant VMD install Gumbart, JC (Wed Sep 07 2022 - 10:13:18 CDT)
- QwikMD QM Tut - FATAL ERROR: Error running command for QM forces calculation hgkrug1_at_gmail.com (Tue Sep 06 2022 - 10:30:58 CDT)
- Using Molefacture plugin in batch mode Enrico Martinez (Tue Sep 06 2022 - 03:22:44 CDT)
- patching of sucrose Akash Mondal (Sat Sep 03 2022 - 01:14:51 CDT)
- Automation of Analysis from QwikMD and Loading Trajectory Without Water in QwikMD Efthymiou, Christos (Thu Sep 01 2022 - 08:48:31 CDT)
- Chains x, y, and z cannot be selected Charles McAnany (Wed Aug 31 2022 - 14:27:29 CDT)
- How to choose solid color in clipping plane render with POV-Ray Prateek Bansal (Tue Aug 30 2022 - 11:10:42 CDT)
- Add Topology and Parameters in QwikMD Efthymiou, Christos (Tue Aug 30 2022 - 10:09:37 CDT)
- Problem with measure bond command returning -NaN for some frames Norbert Straeter (Mon Aug 29 2022 - 07:32:17 CDT)
- Correlation matrix illustration via heating map Maghsoud, Yazdan (Sun Aug 28 2022 - 11:08:11 CDT)
- DisRG Plugin Availability Efthymiou, Christos (Thu Aug 25 2022 - 10:43:10 CDT)
- rdf with respect to a specific point michaelmorgan937_at_gmail.com (Wed Aug 24 2022 - 13:17:33 CDT)
- Mutation of Amino Acid Akash Mondal (Sat Aug 20 2022 - 01:11:34 CDT)
- CaFE VMD Plugin Errors at PB Calculation Step Efthymiou, Christos (Fri Aug 19 2022 - 04:03:25 CDT)
- Error in FFTK charges optimization (Run Optimization) Chenbo Yan (Thu Aug 18 2022 - 21:31:59 CDT)
- CaFE Plugin - Didn't Find vDW Parameter for Atom Type HT1 Error Efthymiou, Christos (Thu Aug 18 2022 - 11:11:35 CDT)
- Angle Cutoff variable for Hydrogen Bonds David Carrasco de Busturia (Thu Aug 18 2022 - 05:41:30 CDT)
- Protein residue read as solvent Arthur Pereira da Fonseca (Tue Aug 16 2022 - 18:49:52 CDT)
- Re: atomselect for interacting hydroxyl groups Vermaas, Josh (Tue Aug 16 2022 - 12:53:40 CDT)
- atomselect for interacting hydroxyl groups Huang, Caleb (Tue Aug 16 2022 - 11:36:40 CDT)
- problems with OSX 64-bit installation Charlie Mcdowell (Mon Aug 15 2022 - 23:05:09 CDT)
- OSPRay error on startup Windows11 Chris Taylor (Thu Aug 11 2022 - 17:26:42 CDT)
- Adding Topology+Parameter For Small Molecule in QwikMD Efthymiou, Christos (Tue Aug 09 2022 - 08:09:41 CDT)
- Hetero Chain not Recognized by Structure Manipulation Window Efthymiou, Christos (Mon Aug 08 2022 - 11:10:16 CDT)
- Preparing Simulation Files Quickly Using QwikMD Efthymiou, Christos (Fri Aug 05 2022 - 03:46:56 CDT)
- Multi-core CPU does not work with VMD. toshiaki.tomimori_at_uniadex.co.jp (Wed Aug 03 2022 - 06:10:01 CDT)
- Unable to Delete Macro QwikMD Error Efthymiou, Christos (Mon Aug 01 2022 - 03:55:53 CDT)
- compiling VMD 1.9.3 under Ubuntu 22.04LTS: modern C library issues Strahs, Dr. Daniel Bernard (Sat Jul 30 2022 - 14:04:38 CDT)
- Question about Network Analysis tutorial chanyann06_at_stu.scu.edu.cn (Fri Jul 29 2022 - 07:12:07 CDT)
- Color change in VMD Saikat Pal (Wed Jul 27 2022 - 10:33:12 CDT)
- Create CHARMM COR files with VMD Prathit Chatterjee (Tue Jul 26 2022 - 08:50:27 CDT)
- Color Coding by Residue Type Peter (Mon Jul 25 2022 - 15:28:58 CDT)
- << multiple atom selection >> I. Camps (Sat Jul 23 2022 - 11:13:55 CDT)
- Re: << multiple atom selection >> Ashar Malik (Sat Jul 23 2022 - 12:14:54 CDT)
- Re: << multiple atom selection >> Zachary SMITH (Sat Jul 23 2022 - 12:20:13 CDT)
- Re: << multiple atom selection >> Axel Kohlmeyer (Sat Jul 23 2022 - 13:02:47 CDT)
- Re: << multiple atom selection >> I. Camps (Sat Jul 23 2022 - 16:48:32 CDT)
- VMD 1.9.4a57 on Linux ? Thibault TUBIANA (Fri Jul 22 2022 - 09:08:56 CDT)
- NAMDEnergy Plugin in VMD Kartik Tulsian (Sat Jul 16 2022 - 05:11:00 CDT)
- Permanent position Research Software HPC Engineer at the University of Delaware Juan R. Perilla (Thu Jul 14 2022 - 09:19:01 CDT)
- Cannot write parm7 file with type parm7 Prathit Chatterjee (Thu Jul 14 2022 - 08:54:37 CDT)
- Cafe 1.0 plugin does not recognize commands DENILSON FERREIRA DE OLIVEIRA (Mon Jul 11 2022 - 09:07:19 CDT)
- PROBLEM INSTALLING VMD Edivaldo Rodrigues (Mon Jul 11 2022 - 06:53:09 CDT)
- (no subject) Edivaldo Rodrigues (Thu Jul 07 2022 - 16:12:53 CDT)
- (no subject) Huertas, Jan (Wed Jul 06 2022 - 12:04:35 CDT)
- Multiseq doesn't work on mac Carlos Guardia (Fri Jul 01 2022 - 17:38:05 CDT)
- Calculate Free Binding Energy of Protein-Protein Complex: CaFE Extension Efthymiou, Christos (Tue Jun 28 2022 - 14:26:49 CDT)
- MultiSeq QR structure factorization on the command line Christian Seitz (Tue Jun 28 2022 - 14:07:41 CDT)
- Re: Re: Visualisation of CG bonds Vermaas, Josh (Mon Jun 27 2022 - 07:52:11 CDT)
- Visualisation of CG bonds Raman Preet Singh (Sun Jun 26 2022 - 13:07:45 CDT)
- protein residue not being recognized as protein Ryan Woltz (Fri Jun 17 2022 - 17:12:28 CDT)
- Error with CaFE VMD Plugin Efthymiou, Christos (Thu Jun 16 2022 - 05:30:17 CDT)
- How to reduce the size of a .dcd file? Efthymiou, Christos (Thu Jun 16 2022 - 05:14:03 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Thu Jun 16 2022 - 07:01:13 CDT)
- Re: How to reduce the size of a .dcd file? Vermaas, Josh (Thu Jun 16 2022 - 07:57:50 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Fri Jun 17 2022 - 07:26:49 CDT)
- Re: How to reduce the size of a .dcd file? Axel Kohlmeyer (Fri Jun 17 2022 - 09:45:16 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Sun Jun 19 2022 - 08:15:37 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Sun Jun 19 2022 - 13:51:13 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Tue Jun 21 2022 - 04:35:02 CDT)
- Re: How to reduce the size of a .dcd file? Giacomo Fiorin (Tue Jun 21 2022 - 06:07:54 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Fri Aug 26 2022 - 14:04:03 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Mon Aug 29 2022 - 01:47:51 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Mon Aug 29 2022 - 03:55:39 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Mon Aug 29 2022 - 04:07:18 CDT)
- Re: How to reduce the size of a .dcd file? Efthymiou, Christos (Mon Aug 29 2022 - 04:29:13 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Mon Aug 29 2022 - 06:07:00 CDT)
- Re: How to reduce the size of a .dcd file? Raman Preet Singh (Thu Jun 16 2022 - 08:23:34 CDT)
- Re: How to reduce the size of a .dcd file? Geist, Norman (Thu Jun 16 2022 - 07:01:13 CDT)
- water bridges Alexei Rossokhin (Wed Jun 15 2022 - 09:14:46 CDT)
- Different results in using GUI or script Timelime Leonardo Palmieri (Fri Jun 10 2022 - 11:15:34 CDT)
- simple script question michaelmorgan937_at_gmail.com (Fri Jun 10 2022 - 00:02:39 CDT)
- GPU-accelerated MSD calculation Max Win (Thu Jun 09 2022 - 12:20:20 CDT)
- Unable to useTachyon-Optix renderer when VMD is installed in Windows Subsystem for Linux (WSL) Vaidehi Doke (Wed Jun 08 2022 - 06:56:04 CDT)
- Script Modification to Print Phi and Psi Angles Oscar Bastidas (Mon Jun 06 2022 - 23:12:08 CDT)
- Clarification on RMSF Calculation Efthymiou, Christos (Mon May 30 2022 - 14:08:16 CDT)
- Movie Maker plugin parallel MPI rendering Chris Taylor (Sun May 29 2022 - 17:33:46 CDT)
- Re: Tcl Scripts Fails Unless Run in Tkconsole Alexander Adams (Thu May 26 2022 - 19:35:44 CDT)
- Tcl Scripts Fails Unless Run in Tkconsole Alexander Adams (Thu May 26 2022 - 17:50:41 CDT)
- QFilesize_limit_exceeded_(core_dumped)=94_with_VMD_on_?= Linux Dourna Jamshideasli (Thu May 26 2022 - 11:21:50 CDT)
- Why the restype color of Gly residue in protein is green (polar)? Daniel Marin (Tue May 24 2022 - 04:28:35 CDT)
- measure sasa and memory issue Ackad, Edward (Sun May 22 2022 - 10:54:55 CDT)
- Launching VMD Gui from WSL Centos compiled from source manuel mourato (Sat May 21 2022 - 07:58:43 CDT)
- Plot RMSD/RMSF/SASA Results from Multiple Trajectories on Same Plot Efthymiou, Christos (Thu May 19 2022 - 14:53:57 CDT)
- Calculate Free Energy of Protein-Protein Binding Efthymiou, Christos (Thu May 12 2022 - 13:55:43 CDT)
- FFTK Opt.Bonded error: unmatched open quote in list Zakaria Bouchouireb (Tue May 10 2022 - 03:14:24 CDT)
- Parsing exit code from TCL script to bash bypassing VMD GIUSEPPE LEONARDO LICARI (Mon May 09 2022 - 08:20:59 CDT)
- Non-functional RMSD Visualizer in 1.9.4a53, windows Jason Smith (Fri May 06 2022 - 14:37:56 CDT)
- remove atoms in a geometric shape using VMD Mohammed GOUNZARI (Fri May 06 2022 - 14:26:06 CDT)
- Using VMD from a Chrome Web Browser manuel mourato (Fri May 06 2022 - 06:23:59 CDT)
- FFTK Parameterization of Halogenated Molecule Bassam Haddad (Thu May 05 2022 - 11:24:24 CDT)
- Parallel rendering example from tutorial, "VMD parallel commands" Chris Taylor (Mon May 02 2022 - 21:49:45 CDT)
- Re: Parallel rendering example from tutorial, "VMD parallel commands" John Stone (Wed May 04 2022 - 15:11:39 CDT)
- Movie Maker plugin parallel MPI rendering Chris Taylor (Thu May 26 2022 - 21:23:39 CDT)
- Unable to reload a saved state in VMD 1.9.3 Debostuti Ghoshdastidar (Mon May 02 2022 - 07:17:12 CDT)
- question on increasing font size on VMD main menu Lei Qian (Sat Apr 30 2022 - 12:21:13 CDT)
- how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:12:18 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Tue Apr 26 2022 - 14:17:02 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:35:41 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:41:29 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Tue Apr 26 2022 - 15:41:32 CDT)
- Re: how to analyse a trajectory without loading it Geist, Norman (Tue Apr 26 2022 - 23:00:20 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Wed Apr 27 2022 - 11:38:26 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Wed Apr 27 2022 - 13:49:18 CDT)
- Re: how to analyse a trajectory without loading it Leonardo Palmieri (Tue Apr 26 2022 - 14:35:41 CDT)
- Re: how to analyse a trajectory without loading it John Stone (Tue Apr 26 2022 - 14:17:02 CDT)
- Errors using 'replicateCrystal.tcl' tutorial script Linda Ravazzano (Tue Apr 26 2022 - 09:10:39 CDT)
- FFTK baOpt electronic effects Aleksei (Wed Apr 13 2022 - 22:28:14 CDT)
- FFTK baOpt electronic effects Daniel Fellner (Wed Apr 13 2022 - 12:33:04 CDT)
- sched_setaffinity error message when using srun to give VMD only a portion of the cores on a node [SOLVED] Neale, Christopher Andrew (Tue Apr 12 2022 - 10:52:15 CDT)
- VMD dumps core after OSPRay render completes Chris Taylor (Sun Apr 10 2022 - 15:46:02 CDT)
- ffTK can't use empty string as operand of "*" vmd194a53win64-SetupV7.exe Rahul Nikhar (Tue Apr 05 2022 - 18:46:47 CDT)
- error 1114 when loading plugins Eric Ledieu (Tue Apr 05 2022 - 12:07:49 CDT)
- VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) yjcoshc (Mon Apr 04 2022 - 10:06:35 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) John Stone (Mon Apr 04 2022 - 10:11:51 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) Josh Vermaas (Mon Apr 04 2022 - 11:15:30 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) yjcoshc (Mon Apr 04 2022 - 11:18:41 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) John Stone (Mon Apr 04 2022 - 11:30:35 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) Dominique Mias-Lucquin (Wed Apr 06 2022 - 07:58:22 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) Vermaas, Josh (Wed Apr 06 2022 - 08:04:56 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) John Stone (Wed Apr 06 2022 - 09:48:56 CDT)
- Re: VMD 1.9.4 crashes after running the "Merge Structures" plugin (with psfgen 2.0) yjcoshc (Mon Apr 04 2022 - 11:18:41 CDT)
- VMD MPI error Lenz Fiedler (Mon Apr 04 2022 - 09:39:17 CDT)
- Re: VMD MPI error John Stone (Mon Apr 04 2022 - 10:04:05 CDT)
- Re: VMD MPI error Lenz Fiedler (Mon Apr 04 2022 - 10:45:52 CDT)
- Re: VMD MPI error John Stone (Mon Apr 04 2022 - 11:37:34 CDT)
- Re: VMD MPI error Lenz Fiedler (Tue Apr 05 2022 - 01:29:09 CDT)
- Re: VMD MPI error Lenz Fiedler (Wed Apr 06 2022 - 02:16:09 CDT)
- Re: VMD MPI error Axel Kohlmeyer (Wed Apr 06 2022 - 05:48:26 CDT)
- Re: VMD MPI error Lenz Fiedler (Thu Apr 07 2022 - 02:33:53 CDT)
- Re: VMD MPI error Giacomo Fiorin (Wed Apr 06 2022 - 06:56:04 CDT)
- Re: VMD MPI error Lenz Fiedler (Mon Apr 04 2022 - 10:45:52 CDT)
- Re: VMD MPI error John Stone (Mon Apr 04 2022 - 10:04:05 CDT)
- Unable to rename material Vasista (Mon Apr 04 2022 - 05:40:43 CDT)
- GPU-accelerated RDF Calculation Max Win (Thu Mar 31 2022 - 16:52:56 CDT)
- << memory issue? >> I. Camps (Wed Mar 30 2022 - 20:04:47 CDT)
- How to increase bond length maximum ? maxim todoru (Tue Mar 29 2022 - 06:00:37 CDT)
- FFTK Charge Optimization Target Data Daniel Fellner (Wed Mar 30 2022 - 02:13:08 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Thu Mar 31 2022 - 10:51:07 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Fri Apr 01 2022 - 02:52:01 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Sun Apr 03 2022 - 15:41:48 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Mon Apr 04 2022 - 02:04:40 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Wed Apr 06 2022 - 21:21:04 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Thu Apr 07 2022 - 03:12:01 CDT)
- Re: FFTK Charge Optimization Target Data Daniel Fellner (Fri Apr 01 2022 - 02:52:01 CDT)
- Re: FFTK Charge Optimization Target Data Gumbart, JC (Thu Mar 31 2022 - 10:51:07 CDT)
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- Issue in wat_hbond.tcl script Alvea Tasneem (Thu Mar 24 2022 - 12:47:24 CDT)
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- How to read netcdf files on Windows version of VMD? Suchetana Gupta (Mon Mar 14 2022 - 00:08:49 CDT)
- Re: VMD 1.9.4 as a Python Module Vermaas, Josh (Thu Mar 10 2022 - 08:50:16 CST)
- VMD 1.9.4 as a Python Module Dominique Mias-Lucquin (Wed Mar 09 2022 - 05:15:39 CST)
- Problem w/ DCD Title Block When Saving - Using 'Animate Write' vs Saving Via GUI Adam Gross (Tue Mar 08 2022 - 11:39:05 CST)
- PSF Script Mcguire, Kelly (Sat Mar 05 2022 - 11:50:08 CST)
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- read setting from text file Marco Di Gennaro (TME) (Tue Mar 01 2022 - 07:59:38 CST)
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- get coordinates for each frame in a trjectory Alessandro Ruda (Sun Feb 27 2022 - 08:03:44 CST)
- Re: command measure inertia Vermaas, Josh (Sat Feb 26 2022 - 11:57:31 CST)
- command measure inertia Alessandro Ruda (Sat Feb 26 2022 - 09:59:14 CST)
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- Molecular orbitals from molden files florian.naegele_at_uni-ulm.de (Thu Feb 17 2022 - 03:39:37 CST)
- VMD Install Samuel Canner (Mon Feb 14 2022 - 16:44:00 CST)
- Questions - Running vmd on a supercomputer emerson p l (Mon Feb 14 2022 - 08:01:02 CST)
- hmassrepart Artur Hermano (Thu Feb 10 2022 - 16:05:12 CST)
- tkcon behavior in OS X / selection Q Mike McCallum (Tue Feb 08 2022 - 11:57:59 CST)
- Re: tkcon behavior in OS X / selection Q Giacomo Fiorin (Tue Feb 08 2022 - 13:11:58 CST)
- Re: tkcon behavior in OS X / selection Q Mike McCallum (Tue Feb 08 2022 - 13:18:54 CST)
- Re: tkcon behavior in OS X / selection Q Giacomo Fiorin (Tue Feb 08 2022 - 13:45:56 CST)
- Re: tkcon behavior in OS X / selection Q John Stone (Tue Feb 08 2022 - 14:09:13 CST)
- Re: tkcon behavior in OS X / selection Q Cesar Millan (Tue Feb 08 2022 - 14:10:54 CST)
- Re: tkcon behavior in OS X / selection Q John Stone (Tue Feb 08 2022 - 14:17:35 CST)
- Re: tkcon behavior in OS X / selection Q Gumbart, JC (Tue Feb 08 2022 - 17:32:58 CST)
- Re: tkcon behavior in OS X / selection Q Mike McCallum (Tue Feb 08 2022 - 13:18:54 CST)
- Re: tkcon behavior in OS X / selection Q Giacomo Fiorin (Tue Feb 08 2022 - 13:11:58 CST)
- Puzzle with "small molecule" ligand structure in nucleotide environments Francesco Pietra (Sun Feb 06 2022 - 01:59:52 CST)
- autopsf question McGuire, Kelly (Sat Feb 05 2022 - 16:33:09 CST)
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- Any TCL script to identify specific MD water molecules with their respective IDs, forming hbond with certain residues in every frame Alvea Tasneem (Wed Feb 02 2022 - 11:48:23 CST)
- Regarding Periodic MSM calculation Subhasish Mallick (Wed Feb 02 2022 - 02:08:16 CST)
- Issue running vmd and tk commands on my computer through script Huebert, David Nicolas (Wed Feb 02 2022 - 00:19:31 CST)
- Protein-ligand interactions Maryam (Mon Jan 31 2022 - 10:39:44 CST)
- Needing to visualize lots of spheres during solution steps Ali Sheikholeslam (Tue Jan 25 2022 - 13:34:14 CST)
- pbc wrap issue Aditi Gotkhindikar (Sun Jan 23 2022 - 23:55:55 CST)
- Error in tcl script Kiana Jahani (Sun Jan 23 2022 - 05:13:46 CST)
- PDBx/CIF Problem on New PDBs Andrew White (Thu Jan 20 2022 - 10:38:44 CST)
- Problems with charmm36 modified nucleotides for psfgen and namd Francesco Pietra (Thu Jan 20 2022 - 08:26:48 CST)
- Visualize a lammpstrij file Otakandza Glenn (Thu Jan 20 2022 - 05:52:50 CST)
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- Issue with Timeline Plugin related to "geometry manager pack" Aaron Blanchard, Ph.D. (Mon Jan 17 2022 - 23:23:51 CST)
- MOLECULE DESTROYED BY FATAL ERROR Eduardo Estevez (Sun Jan 16 2022 - 14:54:00 CST)
- Place multiple proteins into membrane Georcki Ropon (Tue Jan 11 2022 - 14:31:08 CST)
- Problem selecting atoms MacOS VMD 1.9.4a55 for MacOS X, 64-bit Intel x86 (x86_64) Sergio Perez (Tue Jan 11 2022 - 10:21:12 CST)
- QMMM simulation orbitals visualization step by step francisca andrea salas sepulveda (Tue Jan 11 2022 - 08:17:20 CST)
- "Error: no indices found in file." in carma.indices using NetworkView Nick Bayhi (Fri Jan 07 2022 - 14:19:55 CST)
- Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 03:12:44 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 07:55:42 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 08:45:26 CST)
- Fwd: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 09:01:58 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 12:12:50 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 14:28:13 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 15:27:37 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 09:44:32 CST)
- Re: Failure of autopsf with modified nucleotides Francesco Pietra (Thu Jan 06 2022 - 08:45:26 CST)
- Re: Failure of autopsf with modified nucleotides Peter Freddolino (Thu Jan 06 2022 - 07:55:42 CST)
- mail about VMD installation vidhya sankar (Fri Dec 31 2021 - 08:29:44 CST)
- issue with protein- ligand psfgen Aditi Gotkhindikar (Mon Dec 27 2021 - 05:39:04 CST)
- Question about error while using QwikMD files Ahmad Alqaisi (Fri Dec 24 2021 - 15:25:30 CST)
- Vmd on Monterey Osman, Roman (Thu Dec 23 2021 - 22:31:03 CST)
- How to write a netcdf file in vmd from already loaded netcdf/dcd trajectory Prathit Chatterjee (Thu Dec 23 2021 - 05:00:44 CST)
- Too many nested evaluations Hamish Swanson (Mon Dec 20 2021 - 03:58:35 CST)
- Problem with rendering proper colors in linux Soumik Ghosh (Fri Dec 17 2021 - 08:21:25 CST)
- VMD license Arthur Pereira da Fonseca (Thu Dec 16 2021 - 08:37:57 CST)
- VMD warning: ignoring out of range atom #*** with id *** Jiabin You (Wed Dec 15 2021 - 08:37:17 CST)
- Open VMD in current terminal directory Pacci Evaristo, Felipe Fabricio (Tue Dec 14 2021 - 16:57:13 CST)
- Avoid atom indices reassignment Liel Sapir (Mon Dec 13 2021 - 08:46:42 CST)
- Paper request : Assembly and Analysis of Cell-Scale Membrane Envelopes Georcki Ropon (Mon Dec 06 2021 - 15:40:55 CST)
- Distance from surface Raman Preet Singh (Mon Dec 06 2021 - 12:07:40 CST)
- color by molecule number Marco Di Gennaro (TME) (Mon Dec 06 2021 - 04:50:41 CST)
- Re: L-DOPA and non-natural amino acids incorporation Hideyuki Miyatake (Mon Dec 06 2021 - 04:30:50 CST)
- Fatal error: Unable to find dihedral parameters Kiana Jahani (Sun Dec 05 2021 - 06:26:46 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Sun Dec 05 2021 - 10:14:11 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Mon Dec 06 2021 - 02:19:29 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Mon Dec 06 2021 - 07:57:07 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Tue Dec 07 2021 - 05:30:01 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Tue Dec 07 2021 - 08:06:11 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Wed Dec 08 2021 - 00:32:49 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Wed Dec 08 2021 - 07:30:05 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Thu Dec 09 2021 - 02:37:41 CST)
- Re: Fatal error: Unable to find dihedral parameters Kiana Jahani (Mon Dec 06 2021 - 02:19:29 CST)
- Re: Fatal error: Unable to find dihedral parameters Peter Freddolino (Sun Dec 05 2021 - 10:14:11 CST)
- L-DOPA and non-natural amino acids incorporation Hideyuki Miyatake (Sat Dec 04 2021 - 06:00:11 CST)
- FFTK segmentation fault when guessing charge groups Bassam Haddad (Fri Dec 03 2021 - 02:35:30 CST)
- NYT article on SARS-CoV-2 aerosol+virion simulations w/ NAMD+VMD John Stone (Wed Dec 01 2021 - 13:11:51 CST)
- molfile plugin compilation for webassembly Kochnev, Iurii K (Wed Dec 01 2021 - 12:49:27 CST)
- Error 1327.Invalid Drive: F youtux (Tue Nov 30 2021 - 08:54:36 CST)
- Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Tue Nov 30 2021 - 07:45:40 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Phillip Compeau (Tue Nov 30 2021 - 10:27:03 CST)
- How can I incorporate non-natural amino acids into proteins? Hideyuki Miyatake (Tue Nov 30 2021 - 20:15:05 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Wed Dec 01 2021 - 00:49:28 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Wed Dec 01 2021 - 03:23:47 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Wed Dec 01 2021 - 23:35:30 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Thu Dec 02 2021 - 03:49:17 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Raman Preet Singh (Thu Dec 02 2021 - 07:27:27 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 11:13:07 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 11:19:23 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Thu Dec 02 2021 - 13:05:28 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 13:50:06 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Thu Dec 02 2021 - 13:55:59 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha John Stone (Thu Dec 02 2021 - 14:39:05 CST)
- Re: Multiseq / stamp alignment on Windows 1.9.4alpha Stefan Boresch (Wed Dec 01 2021 - 03:23:47 CST)
- Dynamic bonds across PBC MD Simulation (Sat Nov 27 2021 - 07:01:37 CST)
- Issue with STAMP Alignment Phillip Compeau (Fri Nov 26 2021 - 22:05:02 CST)
- basic procedure for ABF-PMF calculation Yogesh Sharma (Fri Nov 26 2021 - 11:53:01 CST)
- Absolute ruler or position limits of the current view Philip Loche (Thu Nov 25 2021 - 07:50:20 CST)
- CNT structure formation Kibria Imtiaz Shabbir (Thu Nov 25 2021 - 03:52:13 CST)
- VMD 1.9.4 (RTRT) with python3 and numpy on Ubuntu Bruininks, B.M.H. (Thu Nov 25 2021 - 03:25:12 CST)
- VMD GUI Francesco Pietra (Thu Nov 25 2021 - 02:15:38 CST)
- support for gromacs topology files Bennion, Brian (Wed Nov 24 2021 - 14:20:11 CST)
- Select a molecule with multiple indexes Otakandza Glenn (Mon Nov 22 2021 - 09:17:27 CST)
- Autoionize with non water solvent Francesco Pietra (Sat Nov 20 2021 - 09:11:49 CST)
- namd minimization looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 02:27:31 CST)
- Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 04:02:10 CST)
- Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Thu Nov 18 2021 - 08:03:40 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Fri Nov 19 2021 - 03:32:39 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Fri Nov 19 2021 - 07:56:58 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Fri Nov 19 2021 - 10:55:59 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Fri Nov 19 2021 - 11:02:59 CST)
- Re: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Fri Nov 19 2021 - 15:15:00 CST)
- Fwd: Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Sat Nov 20 2021 - 08:57:32 CST)
- Re: namd-l: namd minimization looking for wrong angle Peter Freddolino (Thu Nov 18 2021 - 08:03:40 CST)
- Re: namd-l: namd minimization looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 04:02:10 CST)
- autopsfgen looking for wrong angle Francesco Pietra (Thu Nov 18 2021 - 02:21:33 CST)
- Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 19:04:32 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:14:48 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:18:09 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:19:32 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:22:44 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:52:39 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:57:10 CST)
- Re: Change Atom serial Atom Georcki Ropon (Wed Nov 17 2021 - 20:18:09 CST)
- Re: Change Atom serial Atom Vermaas, Josh (Wed Nov 17 2021 - 20:34:02 CST)
- Re: Change Atom serial Atom Axel Kohlmeyer (Wed Nov 17 2021 - 20:14:48 CST)
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- AWS for VMD and NAMD no longer working? Chapman, John O. (Wed Nov 10 2021 - 16:25:23 CST)
- (Semi-)transparent windows on installation on a virtual server Per Larsson (Tue Nov 09 2021 - 14:33:47 CST)
- Cluster analysis SYEDA SABIHA SULTANA LUBNA . (Mon Nov 08 2021 - 04:49:50 CST)
- Angle between molecular dipole and nanotube axis. Yogesh Sharma (Mon Nov 08 2021 - 03:19:45 CST)
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- Remote IMD simulation Georcki Ropon (Sat Nov 06 2021 - 12:03:57 CDT)
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- Re: Color Transition in VMD Giacomo Fiorin (Sat Nov 06 2021 - 10:30:33 CDT)
- Re: Color Transition in VMD maxim todoru (Sat Nov 06 2021 - 11:49:34 CDT)
- Re: Color Transition in VMD Vermaas, Josh (Sat Nov 06 2021 - 13:22:11 CDT)
- Re: Color Transition in VMD John Stone (Tue Nov 09 2021 - 15:59:52 CST)
- Re: Color Transition in VMD maxim todoru (Fri Nov 12 2021 - 15:23:26 CST)
- Re: Color Transition in VMD maxim todoru (Sat Nov 13 2021 - 15:09:15 CST)
- Re: Color Transition in VMD Axel Kohlmeyer (Sat Nov 13 2021 - 16:32:52 CST)
- Re: Color Transition in VMD Axel Kohlmeyer (Sat Nov 13 2021 - 18:42:24 CST)
- Re: Color Transition in VMD Axel Kohlmeyer (Sun Nov 14 2021 - 02:44:41 CST)
- Re: Color Transition in VMD maxim todoru (Fri Nov 12 2021 - 22:20:18 CST)
- Re: Color Transition in VMD maxim todoru (Sat Nov 06 2021 - 11:49:34 CDT)
- Re: Color Transition in VMD Giacomo Fiorin (Sat Nov 06 2021 - 10:30:33 CDT)
- Error reading fep.tcl file in namd SYEDA SABIHA SULTANA LUBNA . (Fri Oct 29 2021 - 06:52:39 CDT)
- Re: namd-l: RMSD and RMSF of ligand Only Mi Yang (Thu Oct 28 2021 - 08:35:40 CDT)
- How to create a color ramp in VMD? anas forum (Wed Oct 27 2021 - 06:55:37 CDT)
- RMSD and RMSF of ligand Only Mi Yang (Thu Oct 28 2021 - 04:48:37 CDT)
- energy partitioning Alexei Rossokhin (Tue Oct 26 2021 - 06:19:49 CDT)
- protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 15:05:58 CDT)
- Re: protein and lipid jumping Ashar Malik (Fri Oct 22 2021 - 21:34:47 CDT)
- Re: protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 21:57:27 CDT)
- Re: protein and lipid jumping Ashar Malik (Fri Oct 22 2021 - 22:15:11 CDT)
- Re: protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 23:34:08 CDT)
- Re: protein and lipid jumping Ashar Malik (Sat Oct 23 2021 - 00:42:39 CDT)
- Re: protein and lipid jumping Ryan Woltz (Sat Oct 23 2021 - 01:01:48 CDT)
- Re: protein and lipid jumping Ashar Malik (Sat Oct 23 2021 - 01:17:03 CDT)
- Re: protein and lipid jumping Ebru Çetin (Sat Oct 23 2021 - 03:51:17 CDT)
- Re: protein and lipid jumping Raman Preet Singh (Sat Oct 23 2021 - 08:36:59 CDT)
- Re: protein and lipid jumping Ryan Woltz (Sun Oct 24 2021 - 13:47:18 CDT)
- Re: protein and lipid jumping Gumbart, JC (Sun Oct 24 2021 - 23:26:45 CDT)
- Re: protein and lipid jumping Ryan Woltz (Fri Oct 22 2021 - 21:57:27 CDT)
- Re: protein and lipid jumping Ashar Malik (Fri Oct 22 2021 - 21:34:47 CDT)
- Script for contact Vs Freq Mi Yang (Thu Oct 21 2021 - 12:41:06 CDT)
- Fwd: Fwd: namd-l: impropers for protonated 1-methyladenosine Francesco Pietra (Wed Oct 20 2021 - 08:40:14 CDT)
- calculate radius of empty space between selected residue Yogesh Sharma (Wed Oct 20 2021 - 04:31:59 CDT)
- contactvFreq TCL script not running Mi Yang (Wed Oct 20 2021 - 00:57:01 CDT)
- Early access to VMD builds with full-time interactive ray tracing display mode (Tachyon RTX RTRT) John Stone (Tue Oct 19 2021 - 13:27:56 CDT)
- Coloring rings with paperchain Xiang Gao (Mon Oct 18 2021 - 16:47:56 CDT)
- VMD Movie Plugin for MacOS Mahsa (Sat Oct 16 2021 - 13:27:50 CDT)
- mac OS Bigsur version 11.6 intel netcdf extension Sunidhi Lenka (Fri Oct 15 2021 - 13:47:32 CDT)
- How can I make VMD use the correct graphics card in a Remote Desktop session? Alexander Balaeff (Thu Oct 14 2021 - 15:17:59 CDT)
- CAFE plugin José Villalaín (Wed Oct 13 2021 - 06:27:18 CDT)
- Re: vmd-l digest V1 #4449 tatyanasysoeva_at_gmail.com (Tue Oct 12 2021 - 19:48:30 CDT)
- Generating silanol group on silica Javier Ivan Wong Romero (Tue Oct 12 2021 - 18:40:44 CDT)
- Change Tkconsole brackground Georcki Ropon (Sun Oct 10 2021 - 14:19:12 CDT)
- partially loading all dcd files using animatedcds X_ChangeProperty: BadValue Ryan Woltz (Sun Oct 10 2021 - 10:27:00 CDT)
- Creation of SiC NP Francesco Coppola (Fri Oct 08 2021 - 11:37:59 CDT)
- save the secondary structure and rmsd Runak R (Fri Oct 08 2021 - 10:18:17 CDT)
- Density profile of MICELLE . sheikh sameer (Fri Oct 08 2021 - 09:55:58 CDT)
- Problem running CAFE for MMPBSA using CHARMM PB Radius Javier Ivan Wong Romero (Thu Oct 07 2021 - 20:38:11 CDT)
- Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Tue Oct 05 2021 - 22:10:14 CDT)
- Re: Merge frames of PDB asymmetric unit to biological assembly Axel Kohlmeyer (Tue Oct 05 2021 - 23:42:45 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Wed Oct 06 2021 - 21:02:58 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Tue Oct 12 2021 - 21:46:24 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Thu Oct 14 2021 - 14:21:39 CDT)
- Re: Merge frames of PDB asymmetric unit to biological assembly John Stone (Mon Oct 18 2021 - 11:55:03 CDT)
- RE: Merge frames of PDB asymmetric unit to biological assembly Chris Taylor (Wed Oct 06 2021 - 21:02:58 CDT)
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- Re: Tachyon not rendering large scenes Axel Kohlmeyer (Thu Sep 02 2021 - 11:06:30 CDT)
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- Re: Tachyon not rendering large scenes Jason Hlozek (Thu Sep 02 2021 - 16:41:14 CDT)
- Re: Tachyon not rendering large scenes Carlos Simmerling (Fri Sep 03 2021 - 05:53:07 CDT)
- Re: Tachyon not rendering large scenes John Stone (Fri Sep 17 2021 - 23:54:40 CDT)
- Re: Tachyon not rendering large scenes Jason Hlozek (Mon Sep 20 2021 - 06:19:57 CDT)
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- Re: Tachyon not rendering large scenes Jason Hlozek (Thu Sep 02 2021 - 10:33:43 CDT)
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- Re: Visualizing segmentation/labeling without python dependency Vermaas, Josh (Thu Sep 02 2021 - 07:46:55 CDT)
- Re: Visualizing segmentation/labeling without python dependency Bruininks, B.M.H. (Thu Sep 02 2021 - 08:06:55 CDT)
- Re: Visualizing segmentation/labeling without python dependency Josh Vermaas (Thu Sep 02 2021 - 09:12:24 CDT)
- Re: Visualizing segmentation/labeling without python dependency John Stone (Thu Sep 02 2021 - 09:27:42 CDT)
- Re: Visualizing segmentation/labeling without python dependency Bruininks, B.M.H. (Thu Sep 02 2021 - 04:15:40 CDT)
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- Re: Hydrogen mass repartition PSFGen2.0 René Hafner TUK (Sat Aug 07 2021 - 15:21:21 CDT)
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- Re: Hydrogen mass repartition PSFGen2.0 René Hafner TUK (Sat Aug 07 2021 - 18:53:39 CDT)
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- Re: Hydrogen mass repartition PSFGen2.0 Gumbart, JC (Sun Aug 08 2021 - 07:40:49 CDT)
- Re: Hydrogen mass repartition PSFGen2.0 René Hafner TUK (Sat Aug 07 2021 - 04:20:23 CDT)
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- Re: loading multiple different topologies into the same "molecule" Vermaas, Josh (Thu Jun 10 2021 - 09:19:11 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 12:26:39 CDT)
- Re: loading multiple different topologies into the same "molecule" Axel Kohlmeyer (Thu Jun 10 2021 - 13:26:26 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 13:51:13 CDT)
- Re: loading multiple different topologies into the same "molecule" John Stone (Thu Jun 10 2021 - 15:47:29 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 18:58:54 CDT)
- Re: loading multiple different topologies into the same "molecule" Chris Neale (Thu Jun 10 2021 - 12:26:39 CDT)
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- Re: [topotool] writelammpsdata : custom order for atom types Axel Kohlmeyer (Wed May 12 2021 - 04:30:22 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Yann Claveau (Wed May 12 2021 - 04:37:01 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Yann Claveau (Wed May 12 2021 - 08:12:59 CDT)
- Re: [topotool] writelammpsdata : custom order for atom types Axel Kohlmeyer (Wed May 12 2021 - 08:20:02 CDT)
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- Re: vmd change atom type when saving lammpstrj Yann Claveau (Thu Jul 15 2021 - 03:27:18 CDT)
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- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 10:20:42 CDT)
- Re: Rendering using GPU Jason Smith (Thu Apr 15 2021 - 11:08:29 CDT)
- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 11:23:52 CDT)
- Re: Rendering using GPU Jason Smith (Thu Apr 15 2021 - 11:26:05 CDT)
- Re: Rendering using GPU John Stone (Thu Apr 15 2021 - 11:38:02 CDT)
- Re: Rendering using GPU Jason Smith (Thu Apr 15 2021 - 12:51:55 CDT)
- Re: Rendering using GPU Nikhil Maroli (Fri Apr 16 2021 - 12:16:41 CDT)
- Re: Rendering using GPU John Stone (Fri Apr 16 2021 - 13:01:03 CDT)
- Re: Rendering using GPU Jason Smith (Fri Apr 16 2021 - 13:18:02 CDT)
- Re: Rendering using GPU Carlos Simmerling (Thu Apr 15 2021 - 11:52:07 CDT)
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- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 15:41:45 CDT)
- Re: VMD 1.9.4 won't open .crd files Vermaas, Josh (Mon Apr 05 2021 - 16:37:56 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 16:49:29 CDT)
- Re: VMD 1.9.4 won't open .crd files Vermaas, Josh (Mon Apr 05 2021 - 18:18:20 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 19:10:18 CDT)
- Re: VMD 1.9.4 won't open .crd files mohamed marzouk (Tue Apr 06 2021 - 02:50:07 CDT)
- Re: VMD 1.9.4 won't open .crd files Alex Nazlidis (Mon Apr 05 2021 - 15:41:45 CDT)
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- Re: histidine protonation Vermaas, Josh (Fri Apr 02 2021 - 18:35:53 CDT)
- Re: histidine protonation Francesco Pietra (Sat Apr 03 2021 - 02:11:17 CDT)
- Re: histidine protonation Carlos Simmerling (Sat Apr 03 2021 - 09:44:24 CDT)
- Re: histidine protonation Miro Astore (Sat Apr 03 2021 - 19:28:57 CDT)
- Re: histidine protonation Francesco Pietra (Sun Apr 04 2021 - 08:53:46 CDT)
- Re: histidine protonation Gumbart, JC (Sun Apr 04 2021 - 13:39:18 CDT)
- Re: histidine protonation Brian Radak (Sun Apr 04 2021 - 14:56:14 CDT)
- Re: histidine protonation Francesco Pietra (Sat Apr 03 2021 - 09:22:03 CDT)
- Re: histidine protonation Francesco Pietra (Thu Apr 15 2021 - 09:35:08 CDT)
- Re: histidine protonation Gumbart, JC (Fri Apr 02 2021 - 15:43:20 CDT)
- Re: histidine protonation Vermaas, Josh (Fri Apr 02 2021 - 13:26:13 CDT)
- pbwithin a defined coordinate MD Simulation (Tue Mar 30 2021 - 08:48:51 CDT)
- Electrostatic Potential membrane pores Satyan Sharma (Tue Mar 30 2021 - 03:52:44 CDT)
- change color sequence used in label graphs? Carlos Simmerling (Mon Mar 29 2021 - 14:00:55 CDT)
- Moment of inertia script David Gae (Fri Mar 26 2021 - 15:11:54 CDT)
- Switching from MP2 in FFTK? Smith, Harper E. (Fri Mar 26 2021 - 11:15:10 CDT)
- parameterizing a peptide with a methylated backbone nitrogen SHIVAM TIWARI (Thu Mar 25 2021 - 04:28:36 CDT)
- (no subject) soumadwip ghosh (Thu Mar 25 2021 - 02:57:21 CDT)
- attachment file size limit for the mailing list SHIVAM TIWARI (Thu Mar 25 2021 - 00:19:00 CDT)
- Problem in opening VMD on macOS Catalina Mahsa (Wed Mar 24 2021 - 07:02:09 CDT)
- modify and save updated PSF and CRD files soumadwip ghosh (Wed Mar 24 2021 - 04:02:20 CDT)
- VMD web/email outage most of Tuesday March 23rd John Stone (Mon Mar 22 2021 - 22:45:54 CDT)
- how to generate different starting points to do the md simulations Seera Suryanarayana (Mon Mar 22 2021 - 02:02:18 CDT)
- FFTK: Dihedral scan trans/cis Daniel Fellner (Sun Mar 21 2021 - 06:28:55 CDT)
- Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sat Mar 20 2021 - 23:15:56 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Axel Kohlmeyer (Sun Mar 21 2021 - 00:18:28 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sun Mar 21 2021 - 00:57:03 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Peter Freddolino (Sun Mar 21 2021 - 10:36:48 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sun Mar 21 2021 - 15:58:22 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Peter Freddolino (Sun Mar 21 2021 - 16:01:32 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Ramon Mendoza Uriarte (Sun Mar 21 2021 - 00:57:03 CDT)
- Re: Why do the coordinates of my atoms change when writing to a pdb file? Axel Kohlmeyer (Sun Mar 21 2021 - 00:18:28 CDT)
- Problem with the Box Amnah Alalmaie (Thu Mar 18 2021 - 15:43:30 CDT)
- Could not load .nc file in MAC installed VMD Prathit Chatterjee (Wed Mar 17 2021 - 03:03:39 CDT)
- cannot visualize GROMACS trajectories in VMD 1.9.4 on MacOS Big Sur Davide Marchi (Tue Mar 16 2021 - 05:48:35 CDT)
- set non-zero box sizes for GAMESS output marco di gennaro (Tue Mar 16 2021 - 03:06:35 CDT)
- Problems MacOS Big Sur Sergio Perez (Mon Mar 15 2021 - 02:06:51 CDT)
- Re: Molefacture and writegmxtop stops with no error fan li (Sun Mar 14 2021 - 13:12:00 CDT)
- Trouble launching VMD in Apple M1 Neelanjana Sengupta (Fri Mar 12 2021 - 21:54:49 CST)
- TCL script to measure distance between two points in space William Howe (Wed Mar 10 2021 - 17:19:18 CST)
- Re: Solvating with Pre-equilibration ethanol box Raisa Carmen Andeme Ela (Tue Mar 09 2021 - 15:43:10 CST)
- psfgen on console missing dihedral parameters for standard residues Prof. Eddie (Tue Mar 09 2021 - 13:00:06 CST)
- fftk wat. opt. when charges overlap Prof. Eddie (Mon Mar 08 2021 - 08:46:07 CST)
- Surf drawing representation fails after negative circle radius Christian Seitz (Mon Mar 08 2021 - 01:50:03 CST)
- PBC Shift Center Mcguire, Kelly (Sun Mar 07 2021 - 14:31:30 CST)
- Custom particle shapes Johannes Haataja (Sat Mar 06 2021 - 06:27:04 CST)
- how to change working directory for viewmaster? Carlos Simmerling (Fri Mar 05 2021 - 09:56:07 CST)
- Problems MacOS Big Sur Sergio Perez (Fri Mar 05 2021 - 02:13:18 CST)
- Error defining "clusters" in NetworkView? Smith, Harper E. (Thu Mar 04 2021 - 18:18:26 CST)
- VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" René Hafner TUK (Thu Mar 04 2021 - 14:21:27 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" Giacomo Fiorin (Fri Mar 05 2021 - 11:46:59 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now René Hafner TUK (Sat Mar 06 2021 - 10:14:12 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now John Stone (Sat Mar 06 2021 - 12:37:13 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now René Hafner TUK (Sat Mar 06 2021 - 15:21:00 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now John Stone (Sat Mar 06 2021 - 15:26:51 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now René Hafner TUK (Sat Mar 06 2021 - 16:20:35 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now John Stone (Sat Mar 06 2021 - 16:30:09 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" WORKS now --- FLTK issue now René Hafner TUK (Sat Mar 06 2021 - 10:14:12 CST)
- Re: VMD Compilation with LEPTON & C++11 to support COLVARS "customFunction" Giacomo Fiorin (Fri Mar 05 2021 - 11:46:59 CST)
- Redundant entries in force field parameters generated by paratool plugin in VMD Mandayam Bharathi, Harsha (Wed Mar 03 2021 - 12:03:25 CST)
- Using writelammpsdata in 1.9.4 Robert Chan-Jobe (Tue Mar 02 2021 - 19:11:58 CST)
- Render image background-free Pacci Evaristo, Felipe Fabricio (Tue Mar 02 2021 - 13:43:02 CST)
- trouble with multiseq Hedlund, Erik (Tue Mar 02 2021 - 10:34:01 CST)
- Reduce Waterbox Dimensions Post Simulation Mcguire, Kelly (Mon Mar 01 2021 - 18:13:04 CST)
- Custom residue in mutate psfgen Prof. Eddie (Mon Mar 01 2021 - 14:10:15 CST)
- Fwd: Problem with QwikMD analysis Ranabir Majumder (Mon Mar 01 2021 - 13:29:03 CST)
- (no subject) soumadwip ghosh (Mon Mar 01 2021 - 03:13:50 CST)
- New User Cannot Access VMD on Windows Phelan Jr., Frederick R. Dr. (Fed) (Fri Feb 26 2021 - 18:20:29 CST)
- Couldn't read internal coordinate table and list index out of range Ruijie Darius Teo (Tue Feb 23 2021 - 13:58:49 CST)
- Problem in DISPLAY of VMD from remote server in local Mac Machine Prathit Chatterjee (Tue Feb 23 2021 - 07:20:39 CST)
- question about RDF parinaz bashirbanaem (Fri Feb 19 2021 - 11:19:36 CST)
- question about RDF parinaz bashirbanaem (Fri Feb 19 2021 - 10:46:32 CST)
- Plotting orbitals from Molden file Chang, Christopher (Tue Feb 16 2021 - 16:53:56 CST)
- Native contacts tcl script crashed Sunita Patel (Tue Feb 16 2021 - 05:01:30 CST)
- Re: Native contacts tcl script crashed Axel Kohlmeyer (Tue Feb 16 2021 - 05:12:14 CST)
- Re: Native contacts tcl script crashed Sunita Patel (Thu Feb 18 2021 - 00:36:29 CST)
- Re: Native contacts tcl script crashed Ashar Malik (Thu Feb 18 2021 - 01:02:58 CST)
- Re: Native contacts tcl script crashed Axel Kohlmeyer (Thu Feb 18 2021 - 01:13:34 CST)
- AW: Native contacts tcl script crashed Norman Geist (Thu Feb 18 2021 - 01:53:14 CST)
- Re: Native contacts tcl script crashed Sunita Patel (Thu Feb 18 2021 - 23:07:53 CST)
- Re: Native contacts tcl script crashed John Stone (Fri Feb 19 2021 - 02:02:56 CST)
- Re: Native contacts tcl script crashed Sunita Patel (Thu Feb 18 2021 - 00:36:29 CST)
- Re: Native contacts tcl script crashed Axel Kohlmeyer (Tue Feb 16 2021 - 05:12:14 CST)
- Calculation of residue pair energy values Daniel STERBULEAC (Sun Feb 14 2021 - 16:46:12 CST)
- Calculation of residue pair energy values Manas Kohli (Sun Feb 14 2021 - 07:54:51 CST)
- ffTK torsion scan? Smith, Harper E. (Thu Feb 11 2021 - 18:30:51 CST)
- Problem in VMD Big Sur Sherif Arafa (Thu Feb 11 2021 - 14:41:37 CST)
- VMD. PSF and lone pairs José Villalaín (Thu Feb 11 2021 - 08:23:50 CST)
- Topology for carbon nanotube compatible to Amber Shilpa Gupta (Wed Feb 10 2021 - 02:56:34 CST)
- No residue of segment error Isuru Herath (Sun Feb 07 2021 - 14:16:26 CST)
- Test email Giuseppe Licari (Fri Feb 05 2021 - 12:24:38 CST)
- Test email GIUSEPPE LEONARDO LICARI (Fri Feb 05 2021 - 12:04:17 CST)
- Pbc box on, default Henrik Hariman (Wed Feb 03 2021 - 12:42:28 CST)
- Angles between two groups of atoms Enzo Claudino (Wed Feb 03 2021 - 12:19:00 CST)
- fftk and charmmgui vdW parameters Prof. Eddie (Wed Feb 03 2021 - 10:29:56 CST)
- Creating PDB files of binding pockets that lists ligands first within the file William Howe (Tue Feb 02 2021 - 18:14:55 CST)
- how to search for existing topology SHIVAM TIWARI (Sun Jan 31 2021 - 06:22:14 CST)
- Dealing with lone pairs in fftk Emma Wu (Sat Jan 30 2021 - 20:31:30 CST)
- Deselecting the atoms Yuvam Bhateja (Fri Jan 29 2021 - 10:11:33 CST)
- Electrostatic potential values Araz Jakalian (Fri Jan 29 2021 - 08:29:12 CST)
- setting coloring and drawing methods Magnus Andersson (Fri Jan 29 2021 - 08:05:24 CST)
- launching fftk Prof. Eddie (Wed Jan 27 2021 - 16:36:47 CST)
- PBC wrap with an octahedral water box Benedetta Sampoli Benitez (Wed Jan 27 2021 - 11:44:46 CST)
- novel residue creation and parameterization Prof. Eddie (Wed Jan 27 2021 - 08:33:12 CST)
- Re: novel residue creation and parameterization Raman Preet Singh (Wed Jan 27 2021 - 11:28:56 CST)
- Re: novel residue creation and parameterization Smith, Harper E. (Wed Jan 27 2021 - 11:42:22 CST)
- Re: novel residue creation and parameterization Vermaas, Josh (Wed Jan 27 2021 - 12:01:29 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Wed Jan 27 2021 - 17:46:11 CST)
- Re: novel residue creation and parameterization Peter Freddolino (Wed Jan 27 2021 - 20:13:30 CST)
- remove my email from mailing list Rejwan (Wed Jan 27 2021 - 22:06:53 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Thu Jan 28 2021 - 10:45:17 CST)
- Re: novel residue creation and parameterization Mariano Spivak (Thu Jan 28 2021 - 11:40:10 CST)
- Re: novel residue creation and parameterization Peter Freddolino (Thu Jan 28 2021 - 12:23:51 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Thu Jan 28 2021 - 14:21:13 CST)
- Re: novel residue creation and parameterization Smith, Harper E. (Thu Jan 28 2021 - 14:36:52 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Thu Jan 28 2021 - 15:22:59 CST)
- Re: novel residue creation and parameterization Peter Freddolino (Thu Jan 28 2021 - 16:21:29 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Wed Feb 03 2021 - 10:14:56 CST)
- Re: novel residue creation and parameterization Prof. Eddie (Wed Jan 27 2021 - 17:46:11 CST)
- Compiling VMD with the TNG plugin Dominic Hayward (Mon Jan 25 2021 - 11:46:41 CST)
- Netcdf files mohamed marzouk (Mon Jan 25 2021 - 04:57:34 CST)
- Problem with visualizing trajectory produced in Amber Christopher Gaughan (Mon Jan 25 2021 - 02:05:51 CST)
- Re: OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Maria Dimitrova (Thu Jan 21 2021 - 06:32:59 CST)
- Re: OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Axel Kohlmeyer (Thu Jan 21 2021 - 07:15:46 CST)
- Re: OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Maria Dimitrova (Fri Jan 22 2021 - 02:21:56 CST)
- OpenGL window not rendering over ssh but works when connecting from other computers and works fine locally Maria Dimitrova (Thu Jan 21 2021 - 05:22:57 CST)
- How to keep particular water molecules within the cut off during the simulations Seera Suryanarayana (Wed Jan 20 2021 - 23:15:37 CST)
- Coarse-Graining Protein with Ion Ligands Isuru Herath (Wed Jan 20 2021 - 21:12:31 CST)
- Fixing Memory Overflow Issue with LJ Parameter Assignment Timothy Leong (Wed Jan 20 2021 - 12:23:53 CST)
- Fwd: Naming Atoms in VMD David Alejandro Rincón Daza (Tue Jan 19 2021 - 16:27:44 CST)
- Flipping vector in orient Raul Araya (Tue Jan 19 2021 - 09:21:39 CST)
- Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Mon Jan 18 2021 - 16:31:20 CST)
- Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Thu Jan 28 2021 - 16:28:57 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Gumbart, JC (Mon Feb 01 2021 - 09:49:35 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Mon Feb 01 2021 - 11:10:34 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Daniel Fellner (Mon Feb 01 2021 - 18:45:03 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Tue Feb 02 2021 - 08:20:56 CST)
- Re: Re: Unable to fit dihedral to QM target data in FFTK Gumbart, JC (Mon Feb 01 2021 - 09:49:35 CST)
- Re: Unable to fit dihedral to QM target data in FFTK Akash Banerjee (Thu Jan 28 2021 - 16:28:57 CST)
- Clipping plane Edgar Galicia (Mon Jan 18 2021 - 11:58:43 CST)
- Tachyon sometimes suddenly freezes up when rendering epotential images Soumik Ghosh (Sun Jan 17 2021 - 11:00:56 CST)
- Question about NAMD configuration files Tiglath Moradkhan (Fri Jan 15 2021 - 18:37:04 CST)
- Packing periodic simulation using Pbc wrap error Rakesh K (Thu Jan 14 2021 - 06:41:38 CST)
- Moving Graphics Primitives to Front/Back Timothy Leong (Tue Jan 12 2021 - 09:18:16 CST)
- vector flips Raul Araya (Mon Jan 11 2021 - 15:56:27 CST)
- Update on email sent last week Tiglath Moradkhan (Mon Jan 11 2021 - 12:00:46 CST)
- NAMD RBCG Tutorial dssp Isuru Herath (Sun Jan 10 2021 - 12:58:16 CST)
- Problem when rendering within a tcl loop Arham Amouie (Sun Jan 10 2021 - 04:17:35 CST)
- Problem with running NAMD configuration file Tiglath Moradkhan (Fri Jan 08 2021 - 18:07:43 CST)
- FFTK Issue: Not able to visualize dihedral scan Akash Banerjee (Fri Jan 08 2021 - 17:41:07 CST)
- model with TIP4 water minimization getting crashed every time Faisal, H M Nasrullah (Thu Jan 07 2021 - 21:56:25 CST)
- Problem with following NAMD tutorial Tiglath Moradkhan (Thu Jan 07 2021 - 19:17:22 CST)
- (no subject) K Jan (Thu Jan 07 2021 - 18:18:59 CST)
- FFTK dihedral paramterization Akash Banerjee (Thu Jan 07 2021 - 16:06:23 CST)
- Change Font on VMD Main Window -- Linux Rudy Richardson (Thu Jan 07 2021 - 14:42:13 CST)
- Running equilibration MD simulation Tiglath Moradkhan (Tue Jan 05 2021 - 15:06:41 CST)
- RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Mon Jan 04 2021 - 18:54:26 CST)
- RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:20:21 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 16:48:47 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:54:18 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 16:58:26 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 17:08:44 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:58:04 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 17:14:13 CST)
- RE: RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 17:25:09 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 17:29:43 CST)
- Re: RE: Install VMD from source on Amazon EC2 instance Axel Kohlmeyer (Thu Jan 07 2021 - 16:48:47 CST)
- RE: Install VMD from source on Amazon EC2 instance Chris Taylor (Thu Jan 07 2021 - 16:20:21 CST)
- /usr/local/lib/vmd/vmd_LINUXAMD64: error while loading shared libraries: libOpenGL.so.0: Mi Yang (Mon Jan 04 2021 - 08:40:42 CST)
- Tk Console dsspcmbi file Isuru Herath (Sat Jan 02 2021 - 15:38:04 CST)
- Install VMD with goal of enabling Intel OSPray renderer Chris Taylor (Fri Jan 01 2021 - 03:59:34 CST)
- Random deletions of molecules Tiglath Moradkhan (Wed Dec 30 2020 - 16:22:15 CST)
- CHARMM parameters for ADP-ribosylated arginine? Smith, Harper E. (Tue Dec 29 2020 - 16:03:51 CST)
- Error with RESP in ffTK Emma Wu (Sun Dec 27 2020 - 22:00:35 CST)
- Windows VMD 1.9.4a Version Failing Emma Wu (Sun Dec 27 2020 - 19:16:24 CST)
- VMD NetCDF plugin on POWER9 CPUs (like ORNL Summit) Chris Neale (Sat Dec 26 2020 - 11:49:32 CST)
- PSF Files Giving Long Bonds Isuru Herath (Fri Dec 25 2020 - 08:23:49 CST)
- Fake angles created by AutoPSF Francesco Pietra (Wed Dec 23 2020 - 08:52:35 CST)
- Query regarding 'Protein:ligand Standard Binding Free Energies' tutorial Faisal, H M Nasrullah (Tue Dec 22 2020 - 14:39:15 CST)
- Molecule is shown with too many bonds Domenico Riolfi Barzotto (Fri Dec 18 2020 - 08:32:48 CST)
- PDB Format McGuire, Kelly (Thu Dec 17 2020 - 18:52:37 CST)
- Qurry Regarding Vizualization of two data sets Shubham Agarwal (Thu Dec 17 2020 - 04:38:15 CST)
- Dipole Moment Measurement Hamish Swanson (Wed Dec 16 2020 - 08:04:59 CST)
- VMD and BigSur Alex Peralvarez Marin (Wed Dec 16 2020 - 08:32:01 CST)
- 1.9.4a50 - unable to open DCDs win64 Jason Smith (Wed Dec 16 2020 - 19:35:18 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Wed Dec 16 2020 - 20:32:27 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Thu Dec 17 2020 - 09:43:05 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jason Smith (Thu Dec 17 2020 - 21:11:57 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jérôme Hénin (Fri Dec 18 2020 - 08:45:13 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Giacomo Fiorin (Fri Dec 18 2020 - 09:51:52 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Fri Dec 18 2020 - 10:10:27 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jason Smith (Fri Dec 18 2020 - 12:01:59 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Fri Dec 18 2020 - 10:22:58 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 Jason Smith (Thu Dec 17 2020 - 21:11:57 CST)
- Re: 1.9.4a50 - unable to open DCDs win64 John Stone (Thu Dec 17 2020 - 22:49:39 CST)
- Identifying salt bridges between chains Tiglath Moradkhan (Wed Dec 16 2020 - 14:32:10 CST)
- Qurry Regarding Vizualization og two data sets Shubham Agarwal (Tue Dec 15 2020 - 09:05:05 CST)
- VMD 1.9.4a50 64-bit Windows test build posted John Stone (Mon Dec 14 2020 - 23:46:50 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 04:11:28 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 09:17:09 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 09:33:50 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 09:52:45 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 10:08:42 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Jérôme Hénin (Tue Dec 15 2020 - 10:46:55 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 11:12:20 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 12:06:50 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 13:24:22 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 15:03:03 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 15:27:01 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 01:57:17 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 04:44:38 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 09:12:02 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 10:31:30 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 10:57:22 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 13:49:53 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 14:07:55 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed Dec 16 2020 - 14:16:41 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed Dec 16 2020 - 14:20:44 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Wed May 19 2021 - 03:28:31 CDT)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Wed May 19 2021 - 09:13:43 CDT)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Jérôme Hénin (Tue Dec 15 2020 - 11:09:20 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 11:16:05 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Carlos Simmerling (Tue Dec 15 2020 - 09:58:37 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 11:06:47 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted John Stone (Tue Dec 15 2020 - 09:17:09 CST)
- Re: VMD 1.9.4a50 64-bit Windows test build posted Stefan Boresch (Tue Dec 15 2020 - 04:11:28 CST)
- VMD aborts when setting up MD simulation Tiglath Moradkhan (Mon Dec 14 2020 - 12:36:01 CST)
- VMD 1.9.4a50 test versions for MacOS Big Sur -- both x86 and ARM64 (M1) John Stone (Mon Dec 14 2020 - 01:55:40 CST)
- Re: VMD 1.9.4a50 test versions for MacOS Big Sur -- both x86 and ARM64 (M1) Pacci Evaristo, Felipe Fabricio (Mon Dec 14 2020 - 09:37:03 CST)
- SBCG of molecules Raman Preet Singh (Sat Dec 12 2020 - 12:29:43 CST)
- ProDy issue with QMonly.psf/dcd from QMMM NAMD-ORCA simulations Francesco Pietra (Sat Dec 12 2020 - 10:39:41 CST)
- FW: Seeking assistance Onur Alptrk (Sat Dec 12 2020 - 08:01:31 CST)
- Incorrect visualization of system after catdcd Kandarp Sojitra (Sat Dec 12 2020 - 06:36:45 CST)
- VMD junt won't work on Windows Gustavo Scheiffer (Sat Dec 12 2020 - 01:01:30 CST)
- Re: VMD junt won't work on Windows John Stone (Tue Dec 15 2020 - 00:46:32 CST)
- Re: VMD junt won't work on Windows Gustavo Scheiffer (Tue Dec 15 2020 - 13:03:45 CST)
- Re: VMD junt won't work on Windows Stefan Boresch (Tue Dec 15 2020 - 14:16:56 CST)
- Re: VMD junt won't work on Windows Gustavo Scheiffer (Fri Dec 18 2020 - 11:09:24 CST)
- Re: VMD junt won't work on Windows John Stone (Thu Dec 31 2020 - 12:01:56 CST)
- Re: VMD junt won't work on Windows Stefan Boresch (Mon Jan 04 2021 - 04:23:11 CST)
- Re: VMD junt won't work on Windows Gustavo Scheiffer (Tue Dec 15 2020 - 13:03:45 CST)
- Re: VMD junt won't work on Windows John Stone (Tue Dec 15 2020 - 00:46:32 CST)
- Manipulating volumes in VMD Bassam Haddad (Thu Dec 10 2020 - 16:18:23 CST)
- Problem with rendering modified bond label position with Tachyon Antonija Tomić (Thu Dec 10 2020 - 12:38:20 CST)
- (no subject) Ashma Khan (Thu Dec 10 2020 - 10:16:13 CST)
- confusing about the residue number Ashma Khan (Wed Dec 09 2020 - 22:43:18 CST)
- Problem resolved Tiglath Moradkhan (Wed Dec 09 2020 - 15:33:42 CST)
- My Protein is a homology model Tiglath Moradkhan (Wed Dec 09 2020 - 13:32:18 CST)
- VMD version Tiglath Moradkhan (Wed Dec 09 2020 - 12:25:44 CST)
- Ongoing problem with QwickMD plugin Tiglath Moradkhan (Wed Dec 09 2020 - 12:09:04 CST)
- Movie Making Troubles Demy Hernandez (Tue Dec 08 2020 - 18:48:07 CST)
- Problems with QwickMD plugin Tiglath Moradkhan (Tue Dec 08 2020 - 16:23:48 CST)
- RMSF Trajectory extraction script Mi Yang (Tue Dec 08 2020 - 05:39:33 CST)
- How to measure several angles? David Alejandro Rincón Daza (Mon Dec 07 2020 - 15:55:19 CST)
- VMD for macOS Big Sur Pacci Evaristo, Felipe Fabricio (Sun Dec 06 2020 - 16:35:36 CST)
- (no subject) Arthur Pereira da Fonseca (Sat Dec 05 2020 - 15:31:30 CST)
- Re: [EXTERNAL]Re: h-bond plugin with QMMM Rafael Bernardi (Thu Dec 03 2020 - 10:44:37 CST)
- Dipole Moment calculation Shounak Mukherjee (Wed Dec 02 2020 - 04:16:34 CST)
- h-bond plugin with QMMM Francesco Pietra (Wed Dec 02 2020 - 03:56:05 CST)
- Error tachyon rendering Mac Catalina fabio trovato (Sat Nov 28 2020 - 19:22:27 CST)
- VMD crash due to large volume of .dcd file Mi Yang (Sat Nov 28 2020 - 13:49:16 CST)
- Readpsf Error Isuru Herath (Sat Nov 28 2020 - 13:01:55 CST)
- Re: Readpsf Error Peter Freddolino (Sat Nov 28 2020 - 18:03:01 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 08:56:47 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 08:58:31 CST)
- Re: Readpsf Error Aravinda Munasinghe (Sun Nov 29 2020 - 09:29:34 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 09:38:20 CST)
- Re: Readpsf Error Aravinda Munasinghe (Sun Nov 29 2020 - 10:19:45 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 10:22:56 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 10:15:42 CST)
- Re: Readpsf Error Isuru Herath (Sun Nov 29 2020 - 08:56:47 CST)
- Re: Readpsf Error Aravinda Munasinghe (Sun Nov 29 2020 - 08:48:32 CST)
- Re: Readpsf Error Peter Freddolino (Sat Nov 28 2020 - 18:03:01 CST)
- Gaussian aborting during ffTK - Calc.Bonded Jason Smith (Wed Nov 25 2020 - 23:18:10 CST)
- Packing periodic simulation using Pbc wrap error Rakesh K (Tue Nov 24 2020 - 12:22:26 CST)
- Possible memory leak in vmd 1.9.4a38 or FFTK on Linux Pawel Kedzierski (Tue Nov 24 2020 - 07:35:35 CST)
- Number of water molecules as a function of residue Akash Pandya (Tue Nov 24 2020 - 04:07:02 CST)
- Glycoprotein simulation answer Daniel STERBULEAC (Fri Nov 20 2020 - 23:51:08 CST)
- Outdated Tutorial Files? Eashan C (Fri Nov 20 2020 - 23:17:00 CST)
- Glycoprotein simulation Manas Kohli (Fri Nov 20 2020 - 14:25:18 CST)
- Ambient occlusion / Electrostatic surfaces Lothar Esser (Fri Nov 20 2020 - 12:30:57 CST)
- AVX512 support on Linux. Zhu Liang (Thu Nov 19 2020 - 10:33:42 CST)
- Trajectory analysis without loading all frames Raman Preet Singh (Thu Nov 19 2020 - 08:35:23 CST)
- charge opt not converged Lokendra Poudel (Wed Nov 18 2020 - 10:12:40 CST)
- Re: charge opt not converged Gumbart, JC (Wed Nov 18 2020 - 14:35:01 CST)
- VMD running on Mac OS Big Sur Atreyo Pal (Tue Nov 17 2020 - 20:28:30 CST)
- extended system file not found Eashan C (Tue Nov 17 2020 - 18:36:59 CST)
- Startup problem on Windows Stefan Boresch (Tue Nov 17 2020 - 03:39:20 CST)
- Error "vecscale: parameters must have data" in water interaction step of FFTK Alexandre Suman de Araújo (Mon Nov 16 2020 - 08:49:36 CST)
- Saving updated trajectory coordinates of selected atoms SHRAVANI NETHI . (Mon Nov 16 2020 - 07:07:46 CST)
- Sorting as an increasing function of the integers in suffices Prathit Chatterjee (Mon Nov 16 2020 - 05:31:29 CST)
- (no subject) Eashan C (Mon Nov 16 2020 - 00:32:30 CST)
- Translation Script Demy Hernandez (Tue Nov 10 2020 - 10:55:28 CST)
- cionize plugin VMD Atreyo Pal (Mon Nov 09 2020 - 11:33:51 CST)
- Windows Server 2019 support issue of VMD and NAMD Gawtak Kim (Sun Nov 08 2020 - 20:44:53 CST)
- Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sat Nov 07 2020 - 07:22:40 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Sat Nov 07 2020 - 19:35:23 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sun Nov 08 2020 - 21:50:23 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sun Nov 08 2020 - 21:55:55 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Mon Nov 09 2020 - 00:15:42 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Mon Nov 09 2020 - 01:14:26 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Fri Nov 20 2020 - 04:49:42 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Fri Nov 20 2020 - 11:47:47 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Fri Nov 20 2020 - 22:40:10 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Prathit Chatterjee (Sun Nov 08 2020 - 21:50:23 CST)
- Re: Discrepancy in interaction energy of amber coordinate trajectories of a system Peter Freddolino (Sat Nov 07 2020 - 19:35:23 CST)
- VMD clustering of conformations Jeff Saxon (Sat Nov 07 2020 - 04:57:59 CST)
- Error in charge optimization Nibedita Ray Chaudhuri (Fri Nov 06 2020 - 05:22:09 CST)
- Re: Potential bugs in ffTK dihedral optimization Mariano Spivak (Thu Nov 05 2020 - 14:53:51 CST)
- Analysis of DLG filles Jeff Saxon (Thu Nov 05 2020 - 10:45:19 CST)
- Re: Analysis of DLG filles John Stone (Thu Nov 05 2020 - 10:49:39 CST)
- Re: Analysis of DLG filles Paolo Conflitti (Fri Nov 06 2020 - 03:00:43 CST)
- Visualizing forces from .forcedcd files? Smith, Harper E. (Wed Nov 04 2020 - 12:52:17 CST)
- Restraining selected atoms with multimer Francesco Pietra (Wed Nov 04 2020 - 04:36:11 CST)
- Re: VMD 1.9.4 a48 fails to build from source yjcoshc (Wed Nov 04 2020 - 03:22:28 CST)
- Pulling vector direction in SMD miyatake_at_riken.jp (Wed Nov 04 2020 - 02:57:00 CST)
- Pulling vector direction in SMD miyatake_at_riken.jp (Wed Nov 04 2020 - 02:51:09 CST)
- VMD 1.9.4 a48 fails to build from source yjcoshc (Tue Nov 03 2020 - 19:22:56 CST)
- Autopsf Failed on end of segment Francesco Pietra (Tue Nov 03 2020 - 06:55:01 CST)
- Re: Molefacture 2.0 - missing functionality? Pawel Kedzierski (Fri Oct 30 2020 - 14:54:21 CDT)
- Molefacture 2.0 - missing functionality? Pawel Kedzierski (Fri Oct 30 2020 - 07:17:00 CDT)
- PSFGEN vs AUTOPSF White, Mark (Thu Oct 29 2020 - 18:10:37 CDT)
- Unknown atom type while running psfgen Arusha Acharyya (Mon Oct 26 2020 - 20:37:20 CDT)
- Ospray vs Optix McGuire, Kelly (Fri Oct 23 2020 - 03:27:11 CDT)
- PBC Wrapping McGuire, Kelly (Thu Oct 22 2020 - 16:06:22 CDT)
- Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 13:09:34 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 13:47:24 CDT)
- Re: Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 14:16:06 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 14:28:43 CDT)
- Re: Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 14:33:57 CDT)
- Re: Calculating mean square displacement and removing PBC Josh Vermaas (Thu Oct 22 2020 - 14:50:49 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 15:03:21 CDT)
- Re: Calculating mean square displacement and removing PBC RonitS Chem (Thu Oct 22 2020 - 14:16:06 CDT)
- Re: Calculating mean square displacement and removing PBC Axel Kohlmeyer (Thu Oct 22 2020 - 13:47:24 CDT)
- Failing to load AMBER parameter files in VMD Prathit Chatterjee (Thu Oct 22 2020 - 06:11:34 CDT)
- "atomsel: set: bad data in 0th element" ffTK Emma Wu (Thu Oct 22 2020 - 00:25:01 CDT)
- VMD Align command Daniel STERBULEAC (Mon Oct 19 2020 - 15:33:46 CDT)
- Colors in VMd graphics Remya Ann (Sat Oct 17 2020 - 13:46:52 CDT)
- Combining fragments for parameterization Emma Wu (Thu Oct 15 2020 - 00:50:30 CDT)
- Error in PSFGEN Bassam Haddad (Wed Oct 14 2020 - 18:15:45 CDT)
- Unable to open TkConsole, Possible bug! Adupa Vasista (Wed Oct 14 2020 - 01:51:21 CDT)
- charge optimization Lokendra Poudel (Tue Oct 13 2020 - 17:55:20 CDT)
- error in reading Gaussian log file Lokendra Poudel (Tue Oct 13 2020 - 14:15:39 CDT)
- videostream command? Josh Vermaas (Sat Oct 10 2020 - 17:58:41 CDT)
- Error in building a psf file for nanoparticle Yuvam Bhateja (Sat Oct 10 2020 - 03:04:41 CDT)
- Formation of a nanoparticle-ligand complex Yuvam Bhateja (Fri Oct 09 2020 - 14:10:08 CDT)
- Set molecule ID by topo tools fan li (Fri Oct 09 2020 - 11:26:04 CDT)
- VMD images/movies of SARS-CoV-2 work in NYT... John Stone (Fri Oct 09 2020 - 11:07:32 CDT)
- Bond/angle optimization using FFTK Minh Ho (Thu Oct 08 2020 - 16:39:46 CDT)
- covalent atomic radii customization fulvio ciriaco (Thu Oct 08 2020 - 14:18:30 CDT)
- QwikMD premature exit John Keller (Wed Oct 07 2020 - 16:30:11 CDT)
- Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Wed Oct 07 2020 - 13:44:43 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Josh Vermaas (Wed Oct 07 2020 - 14:48:53 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Wed Oct 07 2020 - 15:28:52 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Axel Kohlmeyer (Wed Oct 07 2020 - 16:08:35 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Robin Betz (Wed Oct 07 2020 - 18:26:41 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? JC Gumbart (Wed Oct 07 2020 - 19:31:08 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Aaron Oakley (Wed Oct 07 2020 - 20:13:58 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Thu Oct 08 2020 - 10:04:11 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Smith, Harper E. (Wed Oct 07 2020 - 15:28:52 CDT)
- Re: Glu-Lys Isopeptide Bond Parameters? Josh Vermaas (Wed Oct 07 2020 - 14:48:53 CDT)
- FFTK: Water Interactions, Steric Clashes Emma Wu (Tue Oct 06 2020 - 22:13:31 CDT)
- shifting of ions from +z to -z in a single frame(1ps) Basanta Acharya (Tue Oct 06 2020 - 21:39:01 CDT)
- Silver nanoparticle with coating of protein. Yuvam Bhateja (Tue Oct 06 2020 - 11:17:26 CDT)
- placing graphics objects at fixed locations on the display Goedde, Chris (Mon Oct 05 2020 - 14:39:02 CDT)
- Vmd uninstallation and reinstallation achchirangeebi (Sat Oct 03 2020 - 05:23:49 CDT)
- Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Fri Oct 02 2020 - 18:29:40 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Daniel Fellner (Fri Oct 02 2020 - 18:39:32 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Fri Oct 02 2020 - 18:44:37 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) John Stone (Tue Oct 06 2020 - 10:36:39 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Wed Oct 07 2020 - 10:12:38 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Wed Oct 07 2020 - 10:22:21 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Minh Ho (Fri Oct 02 2020 - 18:44:37 CDT)
- Re: Errors at Charge Opt. (Charge-2 step from FFTK Screencast) Daniel Fellner (Fri Oct 02 2020 - 18:39:32 CDT)
- How select atoms from mol 0 within "x" of mol 1? Asghar Razavi (Thu Oct 01 2020 - 12:20:19 CDT)
- TCL force script Basanta Acharya (Thu Oct 01 2020 - 02:29:01 CDT)
- TCL script for creating multiple representations on the same molecule William Howe (Wed Sep 30 2020 - 19:17:54 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Wed Sep 30 2020 - 11:16:29 CDT)
- Re: Converting electron density data from .map to .dx in vmd JC Gumbart (Wed Sep 30 2020 - 13:35:30 CDT)
- Re: Converting electron density data from .map to .dx in vmd John Stone (Tue Oct 06 2020 - 20:57:44 CDT)
- high quality videos omid gh (Wed Sep 30 2020 - 11:03:01 CDT)
- increase the resolution of images omid gh (Tue Sep 29 2020 - 13:34:31 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Tue Sep 29 2020 - 08:54:29 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Mon Sep 28 2020 - 16:33:26 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:58:18 CDT)
- Converting electron density data from .map to .dx in vmd Faisal, H M Nasrullah (Mon Sep 28 2020 - 13:56:46 CDT)
- FFTK Opt Torsions: can not find channel named "" Almeida-Hernndez, Yasser, Dr. (Mon Sep 28 2020 - 05:45:50 CDT)
- FFTK Charge Opt Indoles Daniel Fellner (Sun Sep 27 2020 - 20:15:46 CDT)
- Script for Finding Point Group Symmetry of Molecule and Saving the Ideal coordinate Shivang Agarwal (Sat Sep 26 2020 - 00:31:16 CDT)
- FFTK Gaussian Input Generator - Bug? Daniel Fellner (Thu Sep 24 2020 - 20:20:36 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Thu Sep 24 2020 - 21:22:39 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Thu Sep 24 2020 - 23:08:50 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Fri Sep 25 2020 - 00:54:04 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Fri Sep 25 2020 - 06:39:47 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Fri Sep 25 2020 - 08:42:57 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Fri Sep 25 2020 - 16:30:18 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Axel Kohlmeyer (Fri Sep 25 2020 - 17:29:43 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Fri Sep 25 2020 - 17:37:45 CDT)
- Re: FFTK Gaussian Input Generator - Bug? JC Gumbart (Thu Sep 24 2020 - 23:08:50 CDT)
- Re: FFTK Gaussian Input Generator - Bug? Daniel Fellner (Thu Sep 24 2020 - 21:22:39 CDT)
- How to make the trajectory file show the right bonds information in VMD 刘志伟 (Thu Sep 24 2020 - 06:00:44 CDT)
- compile vmd for windows 10 omid gh (Tue Sep 22 2020 - 06:43:36 CDT)
- Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Sun Sep 20 2020 - 02:01:08 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Bassam Haddad (Sun Sep 20 2020 - 17:21:56 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Sun Sep 20 2020 - 20:17:39 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Axel Kohlmeyer (Sun Sep 20 2020 - 21:12:41 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Fri Sep 25 2020 - 18:51:17 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Peter Freddolino (Sat Sep 26 2020 - 21:29:29 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Mark Zottola (Sun Sep 20 2020 - 20:17:39 CDT)
- Re: Unusual coordinates in PDB files exracted from dcd file Bassam Haddad (Sun Sep 20 2020 - 17:21:56 CDT)
- lammpstrj move out zoom alberto (Fri Sep 18 2020 - 08:53:22 CDT)
- 1.9.4_a43: chemical2vmd should use /tmp instead of /usr/tmp Francisco Ramos (Thu Sep 17 2020 - 06:33:30 CDT)
- 1.9.4_a43 mixes g++ and gcc during building and ignores LDFLAGS Francisco Ramos (Thu Sep 17 2020 - 06:26:43 CDT)
- Conformation assignment Navid Shervani-Tabar (Wed Sep 16 2020 - 14:01:30 CDT)
- 1.9.4_a43 parallel build issues with high -j Francisco Ramos (Wed Sep 16 2020 - 06:32:59 CDT)
- The Fe2+ parameter for NAMD simulation sunyeping (Tue Sep 15 2020 - 23:08:25 CDT)
- topo tool guess bond algorithm omid gh (Tue Sep 15 2020 - 13:39:34 CDT)
- Regarding arsorite files Basanta Acharya (Tue Sep 15 2020 - 06:59:12 CDT)
- Questions about using VMD to modify/alter nucleic acid structures CHIRANJEEV BURMA (Sun Sep 13 2020 - 12:01:20 CDT)
- Distance between multiple residues as heat plot Raman Preet Singh (Fri Sep 11 2020 - 06:21:21 CDT)
- hide bonds omid gh (Thu Sep 10 2020 - 02:45:18 CDT)
- VMD write pdb error Arthur Pereira da Fonseca (Wed Sep 09 2020 - 12:16:46 CDT)
- Tachyon freezing up Soumik Ghosh (Tue Sep 08 2020 - 16:02:18 CDT)
- Re: finding number of atoms within a radius Rogers Swai (Mon Sep 07 2020 - 04:56:37 CDT)
- finding number of atoms within a radius Saikat Pal (Mon Sep 07 2020 - 00:54:08 CDT)
- Do different version of NAMD would give different results? Krishna Vkm (Sun Sep 06 2020 - 14:38:26 CDT)
- Re: Do different version of NAMD would give different results? Josh Vermaas (Sun Sep 06 2020 - 17:00:53 CDT)
- Re: Do different version of NAMD would give different results? Peter Freddolino (Sun Sep 06 2020 - 19:00:34 CDT)
- Re: Do different version of NAMD would give different results? Krishna Vkm (Mon Sep 07 2020 - 04:47:50 CDT)
- Re: Do different version of NAMD would give different results? Peter Freddolino (Mon Sep 07 2020 - 07:31:01 CDT)
- Re: Do different version of NAMD would give different results? Krishna Vkm (Mon Sep 07 2020 - 08:04:08 CDT)
- Re: Do different version of NAMD would give different results? Krishna Vkm (Mon Sep 07 2020 - 04:56:11 CDT)
- Re: Do different version of NAMD would give different results? Peter Freddolino (Sun Sep 06 2020 - 19:00:34 CDT)
- Re: Do different version of NAMD would give different results? Josh Vermaas (Sun Sep 06 2020 - 17:00:53 CDT)
- topotool lammps data_file viewing omid gh (Sun Sep 06 2020 - 06:20:02 CDT)
- VMD python3 version Pacho Ramos (Sat Sep 05 2020 - 07:16:15 CDT)
- Re: Error in NAMD plot John Stone (Mon Aug 31 2020 - 11:45:27 CDT)
- Fwd: N-glycosylation in AutoPSF Adupa Vasista (Sat Aug 29 2020 - 03:21:23 CDT)
- Loading AMBER coordinates in VMD text mode Prathit Chatterjee (Fri Aug 28 2020 - 00:39:33 CDT)
- Copying the new alpha sources of VMD into the installation directory Faisal, H M Nasrullah (Tue Aug 25 2020 - 19:09:19 CDT)
- Shadows in TachyonLOptiXInternal vs TachyonLOptiXInteractive Soeren von Buelow (Tue Aug 25 2020 - 09:06:03 CDT)
- command line options for video in vmd Remya Ann (Mon Aug 24 2020 - 02:05:49 CDT)
- NT in bilayer RAHUL SURESH (Sun Aug 23 2020 - 15:19:33 CDT)
- Using MDFF 0.6 in VMD 1.9.4a Conrad F Li (Fri Aug 21 2020 - 11:19:41 CDT)
- FEP simulation analysis error Mckellan S Gonzales (Thu Aug 20 2020 - 11:49:03 CDT)
- VMD display freezing Yogesh Sharma (Thu Aug 20 2020 - 09:32:46 CDT)
- MDFF tutorial is not working Faisal, H M Nasrullah (Thu Aug 20 2020 - 09:09:24 CDT)
- Non-natural amino acid issues with autopsf Paul O'Leary (Thu Aug 20 2020 - 04:19:38 CDT)
- How do I define "collision only" atoms using MSMS? Shang,Emily (Wed Aug 19 2020 - 10:24:08 CDT)
- New LAMMPS atom style for TopoTools Yasser Almeida-Hernandez (Wed Aug 19 2020 - 09:19:59 CDT)
- No NetCDF file type for Mac Catalina Luis Claudio Pessoa Dias (Wed Aug 19 2020 - 09:10:39 CDT)
- Any tutorial/manual for Dowser for membrane protein modeling Faisal, H M Nasrullah (Tue Aug 18 2020 - 12:14:05 CDT)
- Error in fftk during bond opt using VMD 1.9.3 Faisal, H M Nasrullah (Mon Aug 17 2020 - 10:08:37 CDT)
- Molecular Surface Restricted Shang,Emily (Fri Aug 14 2020 - 19:14:59 CDT)
- different RMSD number in VMD and charmm Michael Morgan (Fri Aug 14 2020 - 17:31:09 CDT)
- PME boolean Debajeet Ghosh (Fri Aug 14 2020 - 02:14:30 CDT)
- Nanotube in lipid bilayer RAHUL SURESH (Thu Aug 13 2020 - 06:08:42 CDT)
- Coarse graining disordered protein Ritu Arora (Wed Aug 12 2020 - 12:34:41 CDT)
- FFTK Dihedrals Opt - Multiplicity modification Yasser Almeida-Hernandez (Wed Aug 12 2020 - 09:34:59 CDT)
- Using VolMap for center of mass amin sagar (Mon Aug 10 2020 - 11:16:29 CDT)
- No file upon rendering Holland J.O. (Mon Aug 10 2020 - 06:22:06 CDT)
- FFTK - issue after hessian loading during bonds/angles optimization Yasser Almeida-Hernandez (Mon Aug 10 2020 - 04:41:58 CDT)
- TR: DUCHER Roland (Thu Aug 06 2020 - 03:03:12 CDT)
- Creating a .tpr file from NAMD files Error Ethan Croitoru (Wed Aug 05 2020 - 10:23:49 CDT)
- Error Qbug=3F=29=20with=20Simulated=20annealing=20in?= QFFTK-Bond/Angle=20opt?= Yasser Almeida-Hernandez (Tue Aug 04 2020 - 05:17:06 CDT)
- Re: Error (bug?) with Simulated annealing in FFTK-Bond/Angle opt Peter Freddolino (Wed Aug 05 2020 - 21:46:46 CDT)
- Re: Error Qbug=3F=29=20with=20Simulated=20anne?= aling in FFTK-Bond/Angle opt Yasser Almeida-Hernandez (Thu Aug 06 2020 - 01:36:32 CDT)
- Re: Error (bug?) with Simulated annealing in FFTK-Bond/Angle opt Peter Freddolino (Thu Aug 06 2020 - 10:50:43 CDT)
- Re: Error Qbug=3F=29=20with=20Simulated=20anne?= aling in FFTK-Bond/Angle opt Yasser Almeida-Hernandez (Thu Aug 06 2020 - 10:52:46 CDT)
- Re: Error (bug?) with Simulated annealing in FFTK-Bond/Angle opt Peter Freddolino (Thu Aug 06 2020 - 10:53:48 CDT)
- Re: Error Qbug=3F=29=20with=20Simulated=20anne?= aling in FFTK-Bond/Angle opt Yasser Almeida-Hernandez (Thu Aug 06 2020 - 01:36:32 CDT)
- Re: Error (bug?) with Simulated annealing in FFTK-Bond/Angle opt Peter Freddolino (Wed Aug 05 2020 - 21:46:46 CDT)
- FFTK bonded parameter optimization with ORCA Marcelo C. R. Melo (Mon Aug 03 2020 - 17:26:11 CDT)
- LAMMPS output with VMD Keister, Bradley (Mon Aug 03 2020 - 09:12:26 CDT)
- building VMD with Ubuntu 18.04 Keister, Bradley (Mon Aug 03 2020 - 09:12:25 CDT)
- FFTK Angle optimization error Yasser Almeida-Hernandez (Mon Aug 03 2020 - 06:46:49 CDT)
- Merge Structure changes coordinates to 0 Raman Preet Singh (Mon Aug 03 2020 - 01:58:25 CDT)
- Color specific frames with specific colors in a trajectory Ameya Harmalkar (Sat Aug 01 2020 - 17:58:24 CDT)
- Displaying disulfide bonds with updated VMD Francesco Pietra (Sat Aug 01 2020 - 12:04:20 CDT)
- Non-standard solvents in Solvate Raman Preet Singh (Thu Jul 30 2020 - 13:29:52 CDT)
- Problem with Residue Based Coarse Grain tutorial Manas Kohli (Mon Jul 27 2020 - 04:57:59 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Peter Freddolino (Mon Jul 27 2020 - 22:25:08 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Manas Kohli (Tue Jul 28 2020 - 09:11:29 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Peter Freddolino (Tue Jul 28 2020 - 15:01:58 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Manas Kohli (Tue Jul 28 2020 - 19:21:30 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Peter Freddolino (Tue Jul 28 2020 - 23:50:47 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Peter Freddolino (Wed Jul 29 2020 - 14:15:24 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Manas Kohli (Tue Jul 28 2020 - 09:11:29 CDT)
- Re: Problem with Residue Based Coarse Grain tutorial Peter Freddolino (Mon Jul 27 2020 - 22:25:08 CDT)
- Error with initiation of additional production simulation using Qwikmd jrhau lung (Mon Jul 27 2020 - 04:19:54 CDT)
- Re: Error with initiation of additional production simulation using Qwikmd jrhau lung (Thu Jul 30 2020 - 06:48:11 CDT)
- writing a new trajectory with selected atoms Yogesh Sharma (Fri Jul 24 2020 - 01:05:46 CDT)
- resizing display exits vmd Miro Astore (Thu Jul 23 2020 - 19:11:24 CDT)
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- Re: Create Binding Pocket of Every PDB File In A Directory Using TCL Scripts and Atomselect Command protein and within 4 of resname LIG Bassam Haddad (Mon Jul 20 2020 - 12:58:36 CDT)
- Re: Create Binding Pocket of Every PDB File In A Directory Using TCL Scripts and Atomselect Command protein and within 4 of resname LIG Ashar Malik (Mon Jul 20 2020 - 16:06:03 CDT)
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- Phi and Psi angles for particular residues as a function of time Akash Pandya (Tue Jul 14 2020 - 10:38:28 CDT)
- Trajectory smoothing Maximilian Ebert (Mon Jul 13 2020 - 20:53:09 CDT)
- Difficulty downloading databases for MultiSeq Julia Steckner (Mon Jul 13 2020 - 11:34:50 CDT)
- RBCG models using Martini forces - psf file Alilovic,Kata (Mon Jul 13 2020 - 09:13:19 CDT)
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- seeking suggestion in simulation analysis for pore lining residues in channel protein Yogesh Sharma (Sat Jul 11 2020 - 08:49:42 CDT)
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- Best way to extend molfile plugin Peter Schmidtke (Tue Jul 07 2020 - 07:28:19 CDT)
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- hydrogen bonding calculation Snehasis Chatterjee (Thu Jul 02 2020 - 15:54:47 CDT)
- How to visualize unusual amino acid in VMD with Cartoon or ribbon representation Chetna Tyagi (Wed Jul 01 2020 - 09:29:46 CDT)
- VMD on HPC Adupa Vasista (Wed Jul 01 2020 - 00:00:28 CDT)
- selection of molecules in dynamic region SHRAVANI NETHI . (Mon Jun 29 2020 - 03:05:10 CDT)
- Dangerous bug with pbwithin selection? Norman Geist (Fri Jun 26 2020 - 06:24:02 CDT)
- Potential map of Electric field of charged gas mohammad rezaei (Wed Jun 24 2020 - 03:31:16 CDT)
- How to change the center of Radial coloring method fan li (Tue Jun 23 2020 - 14:50:09 CDT)
- Orientational correlation function SHIVAM TIWARI (Mon Jun 22 2020 - 05:50:10 CDT)
- VMD Failing to Recognize Path Nisler, Collin R. (Sat Jun 20 2020 - 16:21:28 CDT)
- Atomic bond counting wuth VMD Otakandza Glenn (Fri Jun 19 2020 - 06:11:03 CDT)
- FFTK sulfur ChargeOpt Daniel Fellner (Thu Jun 18 2020 - 23:17:42 CDT)
- Re: FFTK sulfur ChargeOpt JC Gumbart (Fri Jun 19 2020 - 15:08:14 CDT)
- Re: FFTK sulfur ChargeOpt Daniel Fellner (Fri Jun 19 2020 - 17:52:54 CDT)
- Re: FFTK sulfur ChargeOpt JC Gumbart (Fri Jun 19 2020 - 18:01:44 CDT)
- Re: FFTK sulfur ChargeOpt Daniel Fellner (Fri Jun 19 2020 - 19:37:01 CDT)
- Re: FFTK sulfur ChargeOpt JC Gumbart (Fri Jun 19 2020 - 19:42:54 CDT)
- Re: FFTK sulfur ChargeOpt Daniel Fellner (Fri Jun 19 2020 - 21:55:53 CDT)
- Re: FFTK sulfur ChargeOpt Daniel Fellner (Mon Jun 22 2020 - 02:09:39 CDT)
- Re: FFTK sulfur ChargeOpt JC Gumbart (Mon Jun 22 2020 - 19:13:54 CDT)
- Re: FFTK sulfur ChargeOpt Daniel Fellner (Wed Jun 24 2020 - 22:36:42 CDT)
- Re: FFTK sulfur ChargeOpt Daniel Fellner (Fri Jun 19 2020 - 17:52:54 CDT)
- Re: FFTK sulfur ChargeOpt JC Gumbart (Fri Jun 19 2020 - 15:08:14 CDT)
- Movie Maker in VMD Seibold, Steve Allan (Thu Jun 18 2020 - 10:38:50 CDT)
- orientational correlation function for protein SHIVAM TIWARI (Thu Jun 18 2020 - 06:20:10 CDT)
- Child killed error: unknown signal Mintare Cesiunaite (Tue Jun 16 2020 - 23:15:36 CDT)
- Visualizing Molecule-Molecule RDFs instead of atom-atom Rameswar Bhattacharjee (Tue Jun 16 2020 - 15:31:58 CDT)
- how to keep the bond , angle , dihedral and improper type after solvating the lammps data fan li (Fri Jun 12 2020 - 14:19:23 CDT)
- VMD 1.9.4 alpha 43 test builds posted... John Stone (Thu Jun 11 2020 - 15:24:45 CDT)
- Regarding Distance measurements DHEERAJ CHITARA (Thu Jun 11 2020 - 05:57:49 CDT)
- Radial distribution function calculation Rameswar Bhattacharjee (Wed Jun 10 2020 - 23:01:30 CDT)
- error: can't read "w" no such variable. 李偉弘 (Wed Jun 10 2020 - 08:16:23 CDT)
- VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames Bart Bruininks (Wed Jun 10 2020 - 08:05:10 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames Bart Bruininks (Wed Jun 10 2020 - 08:37:09 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames John Stone (Wed Jun 10 2020 - 10:05:54 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames John Stone (Wed Jun 10 2020 - 11:11:36 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames Bart Bruininks (Wed Jun 10 2020 - 11:07:58 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames John Stone (Wed Jun 10 2020 - 11:16:17 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames Bart Bruininks (Tue Jun 16 2020 - 07:29:14 CDT)
- Re: VRAM memory piling up OPTIX 1.9.4a42 rendering consecutive frames John Stone (Tue Jun 16 2020 - 12:05:48 CDT)
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- Visualizing Vibrational Modes MD Simulation (Tue Jun 09 2020 - 16:43:38 CDT)
- Fixed atoms Hlder Bandarra Tavares (Tue Jun 09 2020 - 09:35:48 CDT)
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- Fixed atoms question Hlder Bandarra Tavares (Mon Jun 08 2020 - 12:51:07 CDT)
- atoms inside a Nanotube, Deleting Nima Soltani (Sun Jun 07 2020 - 22:49:58 CDT)
- volmap computation_ILS method Muhammad tariq (Sat Jun 06 2020 - 12:08:27 CDT)
- implicit ligand sampling method Muhammad tariq (Sat Jun 06 2020 - 09:58:00 CDT)
- resname X and pbwithin resname X excluding intramolecular Bart Bruininks (Fri Jun 05 2020 - 08:14:43 CDT)
- monomer to tatramer conversion Yogesh Sharma (Thu Jun 04 2020 - 09:55:23 CDT)
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- Selecting first three characters of a variable with tcl in VMD Prathit Chatterjee (Wed Jun 03 2020 - 22:56:41 CDT)
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- PSFGEN David Alejandro Rincón Daza (Tue Jun 02 2020 - 16:51:19 CDT)
- Re: Fw: Hbond extension Axel Kohlmeyer (Tue Jun 02 2020 - 12:43:54 CDT)
- analyzing amino acids forming pore constrictions in a channel protein Yogesh Sharma (Tue Jun 02 2020 - 04:46:41 CDT)
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- measure gofr non-orthogonal MD Simulation (Wed May 27 2020 - 19:40:26 CDT)
- Re: Fwd: Fwd: Fwd: Electrostatic potential maps Sebastian Reiter (Wed May 27 2020 - 09:36:37 CDT)
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- Extrabonds issue Hlder Bandarra Tavares (Wed May 27 2020 - 05:19:12 CDT)
- Transparent QuickSurf ali.kamrani91_at_REMOVE_yahoo.com (Tue May 26 2020 - 12:29:29 CDT)
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- Failed to create Optix rendering context ERROR: Invalid value (OptiXRenderer.C:1214 Lorenzo Casalino (Mon May 25 2020 - 15:28:53 CDT)
- Re: Failed to create Optix rendering context ERROR: Invalid value (OptiXRenderer.C:1214 John Stone (Mon May 25 2020 - 23:16:04 CDT)
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- Fwd: Electrostatic potential maps Francesco Pietra (Sun May 24 2020 - 08:58:49 CDT)
- Re: Fwd: Electrostatic potential maps Mortimer Hemmit (Sun May 24 2020 - 16:31:50 CDT)
- Re: Fwd: Electrostatic potential maps Francesco Pietra (Mon May 25 2020 - 03:03:03 CDT)
- Re: Fwd: Electrostatic potential maps Sebastian Reiter (Mon May 25 2020 - 04:10:18 CDT)
- Re: Fwd: Electrostatic potential maps Francesco Pietra (Mon May 25 2020 - 04:41:32 CDT)
- Fwd: Fwd: Electrostatic potential maps Francesco Pietra (Mon May 25 2020 - 04:48:46 CDT)
- Re: Fwd: Fwd: Electrostatic potential maps Sebastian Reiter (Mon May 25 2020 - 06:35:18 CDT)
- Re: Fwd: Fwd: Electrostatic potential maps Sebastian Reiter (Mon May 25 2020 - 09:56:00 CDT)
- Re: Fwd: Electrostatic potential maps Mortimer Hemmit (Sun May 24 2020 - 16:31:50 CDT)
- Fwd: Electrostatic potential maps Francesco Pietra (Sun May 24 2020 - 08:58:49 CDT)
- cgenff atom type issue Stefano Guglielmo (Fri May 22 2020 - 11:50:36 CDT)
- FFTK: Charge Optimization (Water Int.) Daniel Fellner (Fri May 22 2020 - 01:24:18 CDT)
- Writing DCD files using animate HEMANTH H (Thu May 21 2020 - 00:18:46 CDT)
- Re: VMD patch, console w/ built-in command editing Giacomo Fiorin (Wed May 20 2020 - 10:06:50 CDT)
- RDF from a trajectory generated by SIESTA Linda Sheila Medondjio (Tue May 19 2020 - 14:10:32 CDT)
- Windows version, system out of memory Dallas Warren (Mon May 18 2020 - 02:39:32 CDT)
- vmd console linux shell mode Michael Morgan (Wed May 13 2020 - 20:52:04 CDT)
- new type cross terms in topo tool omid gh (Sat May 09 2020 - 13:46:15 CDT)
- Regarding zinc parameters in CHARMM force field varun dewaker (Sat May 09 2020 - 12:40:52 CDT)
- VMD-L Regarding Zinc parameters varun dewaker (Sat May 09 2020 - 12:38:00 CDT)
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- delete angle type with topo tool omid gh (Sat May 09 2020 - 11:46:22 CDT)
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- MDAnalysis/VMD discrepancy Alexandra Ringsby (Fri May 08 2020 - 15:22:28 CDT)
- visualizing bonds in lammps output reaxff Udeshini Manatunga (Fri May 08 2020 - 03:46:25 CDT)
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- VMD Slices Amali Guruge (Wed May 06 2020 - 19:38:02 CDT)
- Explain Script Neena Susan Eappen (Wed May 06 2020 - 16:54:37 CDT)
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- error with make movie mohammad rezaei (Mon May 04 2020 - 05:54:47 CDT)
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- Solvation in mixed solvent HOUSTON Douglas (Thu Apr 30 2020 - 06:17:23 CDT)
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- Problem with Surf representation in the latest version macOS Catalina Neda Rafieiolhosseini (Mon Apr 27 2020 - 12:56:54 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina Josh Vermaas (Mon Apr 27 2020 - 15:25:36 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina John Stone (Mon Apr 27 2020 - 16:04:29 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina Neda Rafieiolhosseini (Mon Apr 27 2020 - 16:14:03 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina FX (Tue Apr 28 2020 - 05:07:10 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina John Stone (Tue Apr 28 2020 - 11:18:49 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina FX (Tue Apr 28 2020 - 11:35:09 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina John Stone (Tue Apr 28 2020 - 11:42:13 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina John Stone (Mon Apr 27 2020 - 16:04:29 CDT)
- Re: Problem with Surf representation in the latest version macOS Catalina Josh Vermaas (Mon Apr 27 2020 - 15:25:36 CDT)
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- Re: STRIDE issues on Windows John Stone (Wed Apr 29 2020 - 01:16:19 CDT)
- Re: STRIDE issues on Windows John Stone (Wed Apr 29 2020 - 01:20:47 CDT)
- RE: STRIDE issues on Windows mfeiglab_at_gmail.com (Wed Apr 29 2020 - 08:58:38 CDT)
- Re: STRIDE issues on Windows Mortimer Hemmit (Wed Apr 29 2020 - 09:42:43 CDT)
- Re: STRIDE issues on Windows Mortimer Hemmit (Wed Apr 29 2020 - 10:15:45 CDT)
- Re: STRIDE issues on Windows Mortimer Hemmit (Wed Apr 29 2020 - 10:34:19 CDT)
- RE: STRIDE issues on Windows mfeiglab_at_gmail.com (Wed Apr 29 2020 - 10:45:52 CDT)
- RE: STRIDE issues on Windows mfeiglab_at_gmail.com (Wed Apr 29 2020 - 10:08:18 CDT)
- Re: STRIDE issues on Windows John Stone (Wed Apr 29 2020 - 01:16:19 CDT)
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- Re: Calculating Bias for Well-tempered metadynamics Giacomo Fiorin (Thu Apr 23 2020 - 19:00:11 CDT)
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- Re: new cartoon representation resid selection Owen Vickery (Mon Apr 20 2020 - 05:08:47 CDT)
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- Re: Assign active site Ashar Malik (Sun Apr 19 2020 - 17:20:40 CDT)
- Re: Assign active site Nada Afiva (Sun Apr 19 2020 - 17:50:51 CDT)
- Re: Assign active site Ashar Malik (Sun Apr 19 2020 - 18:00:28 CDT)
- Re: Assign active site Nada Afiva (Sun Apr 19 2020 - 18:54:38 CDT)
- Re: Assign active site Ashar Malik (Sun Apr 19 2020 - 20:31:17 CDT)
- Re: Assign active site Nada Afiva (Mon Apr 20 2020 - 03:16:57 CDT)
- Re: Assign active site Ashar Malik (Mon Apr 20 2020 - 04:35:30 CDT)
- Re: Assign active site Nada Afiva (Mon Apr 20 2020 - 07:31:45 CDT)
- Re: Assign active site Ashar Malik (Mon Apr 20 2020 - 07:55:37 CDT)
- Re: Assign active site Nada Afiva (Mon Apr 20 2020 - 08:29:54 CDT)
- Re: Assign active site Ashar Malik (Mon Apr 20 2020 - 08:54:41 CDT)
- Re: Assign active site Nada Afiva (Mon Apr 20 2020 - 16:38:05 CDT)
- Re: Assign active site Ashar Malik (Mon Apr 20 2020 - 17:16:33 CDT)
- Re: Assign active site Nada Afiva (Mon Apr 20 2020 - 17:36:38 CDT)
- Re: Assign active site Nada Afiva (Sun Apr 19 2020 - 17:50:51 CDT)
- Re: Assign active site Ashar Malik (Sun Apr 19 2020 - 17:20:40 CDT)
- label placement with smoothed trajectory Miro Astore (Sat Apr 18 2020 - 20:29:41 CDT)
- Trouble in installing VMD Gardezi,Shahbaz (Fri Apr 17 2020 - 22:11:55 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 17 2020 - 16:04:27 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Fri Apr 17 2020 - 17:42:29 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 17 2020 - 22:23:30 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sat Apr 18 2020 - 07:16:45 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 24 2020 - 00:46:13 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sat Apr 25 2020 - 08:25:09 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 17 2020 - 22:23:30 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Sat Apr 25 2020 - 22:07:53 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 04:27:14 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 04:49:57 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Sun Apr 26 2020 - 14:33:34 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 14:49:37 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Sun Apr 26 2020 - 14:29:43 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Sun Apr 26 2020 - 04:27:14 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Tue Apr 28 2020 - 11:29:38 CDT)
- Re: Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) FX (Fri Apr 17 2020 - 17:42:29 CDT)
- Early VMD 1.9.4 alpha builds for MacOS X Catalina (e.g., 10.15.4) John Stone (Fri Apr 17 2020 - 14:30:59 CDT)
- Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 07:17:02 CDT)
- Re: Counting the number of ligand molecules around my protein Adupa Vasista (Thu Apr 16 2020 - 08:24:27 CDT)
- Re: Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 09:22:00 CDT)
- Re: Counting the number of ligand molecules around my protein Adupa Vasista (Thu Apr 16 2020 - 09:44:21 CDT)
- Re: Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 10:27:16 CDT)
- Re: Counting the number of ligand molecules around my protein amin sagar (Thu Apr 16 2020 - 11:30:24 CDT)
- Re: Counting the number of ligand molecules around my protein Josh Vermaas (Thu Apr 16 2020 - 11:42:08 CDT)
- Re: Counting the number of ligand molecules around my protein Akash Pandya (Thu Apr 16 2020 - 09:22:00 CDT)
- Re: Counting the number of ligand molecules around my protein Adupa Vasista (Thu Apr 16 2020 - 08:24:27 CDT)
- new cartoon representation resid selection Owen Vickery (Thu Apr 16 2020 - 05:04:27 CDT)
- ATOM LPH Francesco Pietra (Tue Apr 14 2020 - 12:57:04 CDT)
- fftk dihedrals error Andrej Tekel (Sun Apr 12 2020 - 03:32:05 CDT)
- Setting graphical representations from the command line Ross Williams (Fri Apr 10 2020 - 14:36:07 CDT)
- compiling VMD with cuda from source Oleksii Zdorevskyi (Fri Apr 10 2020 - 10:28:57 CDT)
- Re: compiling VMD with cuda from source Josh Vermaas (Fri Apr 10 2020 - 11:21:31 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon Apr 13 2020 - 04:28:00 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon Apr 13 2020 - 09:45:11 CDT)
- Re: compiling VMD with cuda from source John Stone (Mon Apr 13 2020 - 09:55:28 CDT)
- Re: compiling VMD with cuda from source Josh Vermaas (Mon Apr 20 2020 - 10:16:47 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon May 04 2020 - 09:11:25 CDT)
- Re: compiling VMD with cuda from source John Stone (Sat May 23 2020 - 02:30:44 CDT)
- Re: compiling VMD with cuda from source Oleksii Zdorevskyi (Mon Apr 13 2020 - 04:28:00 CDT)
- Re: compiling VMD with cuda from source Josh Vermaas (Fri Apr 10 2020 - 11:21:31 CDT)
- Re: namd-l: .coor and .vel output files not generated Josh Vermaas (Thu Apr 09 2020 - 22:04:49 CDT)
- VMD Compatible with Windows with 64-bit OS? Alex Hummels (Thu Apr 09 2020 - 15:44:24 CDT)
- Peptides with Linkage between N-Terminus and Side Chain Hendrik Schröder (Tue Apr 07 2020 - 13:17:07 CDT)
- (no subject) Marcos Verissimo Alves (Mon Apr 06 2020 - 12:04:07 CDT)
- Register some cell information in XYZ files FX (Mon Apr 06 2020 - 05:01:55 CDT)
- VMD Crash Czarny,Ryan (Fri Apr 03 2020 - 12:42:08 CDT)
- Segfault in VMD 1.9.4a38 in DrawMolItem::draw_volume_isosurface_points FX (Fri Apr 03 2020 - 06:18:01 CDT)
- Dangling Bonds Anthony Ruth (Thu Apr 02 2020 - 14:46:33 CDT)
- MDFF chirality restrain error - measure imprp: empty atom index Indrajit Deb (Wed Apr 01 2020 - 15:41:49 CDT)
- Problem compiling VMD 1.9.3 on macOS Catalina 10.15.3 Neda Rafieiolhosseini (Wed Apr 01 2020 - 03:23:13 CDT)
- VMD Energy analysis surya narayanan (Tue Mar 31 2020 - 16:45:40 CDT)
- Loading Chemical Component Dictionary File Crashes VMD Mortimer Hemmit (Mon Mar 30 2020 - 14:42:05 CDT)
- Memory Pool Size - can I optimize this? Chris Broomell (Mon Mar 30 2020 - 10:55:08 CDT)
- Re: Memory Pool Size - can I optimize this? Axel Kohlmeyer (Mon Mar 30 2020 - 12:12:32 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 12:31:27 CDT)
- Re: Memory Pool Size - can I optimize this? Axel Kohlmeyer (Mon Mar 30 2020 - 12:38:51 CDT)
- Re: Memory Pool Size - can I optimize this? Mortimer Hemmit (Mon Mar 30 2020 - 13:21:25 CDT)
- Re: Memory Pool Size - can I optimize this? John Stone (Mon Mar 30 2020 - 14:01:52 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 14:49:05 CDT)
- Re: Memory Pool Size - can I optimize this? Chris Broomell (Mon Mar 30 2020 - 15:58:00 CDT)
- Re: Memory Pool Size - can I optimize this? Giacomo Fiorin (Mon Mar 30 2020 - 16:51:00 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 18:26:00 CDT)
- Re: Memory Pool Size - can I optimize this? John Stone (Tue Mar 31 2020 - 14:46:29 CDT)
- Re: Memory Pool Size - can I optimize this? Chris Broomell (Tue Mar 31 2020 - 15:21:49 CDT)
- Re: Memory Pool Size - can I optimize this? Chris Broomell (Tue Mar 31 2020 - 15:27:29 CDT)
- Re: Memory Pool Size - can I optimize this? ccbroomell_at_gmail.com (Mon Mar 30 2020 - 12:31:27 CDT)
- Re: Memory Pool Size - can I optimize this? Axel Kohlmeyer (Mon Mar 30 2020 - 12:12:32 CDT)
- faced error in operating vmd Ram Krishna Adhikari (Fri Mar 27 2020 - 11:45:42 CDT)
- Lipids generated by VMD could not use "coordpdb" to read jiali wang (Thu Mar 26 2020 - 23:42:27 CDT)
- Visualizing coarse grained particles in VMD Borne, Vincent (Thu Mar 26 2020 - 12:07:21 CDT)
- rmsdtt 'batch mode' Philippe Bopp (Tue Mar 24 2020 - 08:14:22 CDT)
- CIF file reader FX (Sun Mar 22 2020 - 17:00:35 CDT)
- Re: CIF file reader Mortimer Hemmit (Mon Mar 23 2020 - 15:57:20 CDT)
- Re: CIF file reader John Stone (Tue Mar 24 2020 - 11:06:27 CDT)
- Re: CIF file reader FX (Sat Mar 28 2020 - 13:29:56 CDT)
- Re: CIF file reader Giacomo Fiorin (Sat Mar 28 2020 - 15:53:53 CDT)
- Re: CIF file reader FX (Sat Mar 28 2020 - 19:35:14 CDT)
- Re: CIF file reader John Stone (Sat Mar 28 2020 - 22:10:43 CDT)
- Re: CIF file reader Chris Neale (Sat Mar 28 2020 - 23:24:24 CDT)
- Re: CIF file reader Giacomo Fiorin (Sun Mar 29 2020 - 10:04:55 CDT)
- Re: CIF file reader John Stone (Wed Apr 01 2020 - 00:53:17 CDT)
- Re: CIF file reader Chris Neale (Wed Apr 01 2020 - 01:48:32 CDT)
- Re: CIF file reader FX (Sat Apr 04 2020 - 11:10:20 CDT)
- Re: CIF file reader FX (Wed Dec 01 2021 - 04:14:59 CST)
- Re: CIF file reader Axel Kohlmeyer (Wed Dec 01 2021 - 22:26:19 CST)
- Re: CIF file reader John Stone (Wed Dec 01 2021 - 23:38:29 CST)
- Re: CIF file reader Giacomo Fiorin (Thu Dec 02 2021 - 10:04:56 CST)
- Re: CIF file reader FX (Sat Mar 28 2020 - 13:29:56 CDT)
- Running Hydrogen Bonding Analysis with Script 刘宸宇 (Sun Mar 22 2020 - 02:04:34 CDT)
- Pair interaction calculation is not supported in CUDA version Adupa Vasista (Sun Mar 15 2020 - 12:10:53 CDT)
- Recommended Hardware Morgan Hoffman (Sat Mar 14 2020 - 19:56:09 CDT)
- Saving visualization state coordinates Peter Mawanga (Fri Mar 13 2020 - 11:00:16 CDT)
- Re: Qwikmd for QMMM simulations Joao Ribeiro (Thu Mar 12 2020 - 15:33:17 CDT)
- Re: Increasing cores in QwiKMD Joao Ribeiro (Thu Mar 12 2020 - 15:28:23 CDT)
- KS UIUC isn't accessible in new Firefox viktor drobot (Thu Mar 12 2020 - 09:47:11 CDT)
- Steered Molecular Dynamics for Metal-organic frameworks Achar, Sid (Mon Mar 09 2020 - 11:15:14 CDT)
- Qwikmd for QMMM simulations jing liang (Mon Mar 09 2020 - 10:37:34 CDT)
- Increasing cores in QwiKMD Naeem Mahmood Ashraf (Sun Mar 08 2020 - 06:22:04 CDT)
- Re: reseting namd library and uploading new topology file Joao Ribeiro (Fri Mar 06 2020 - 11:00:48 CST)
- reseting namd library and uploading new topology file soodabeh ghaffari (Thu Mar 05 2020 - 09:33:28 CST)
- Angular energy term Paula Mihaljevic-Juric (Thu Mar 05 2020 - 08:06:15 CST)
- Cionize Plugin - Output Options? Michael Robinson (Tue Mar 03 2020 - 23:57:34 CST)
- Rendering resolution Norouzi, Seyed (Mon Mar 02 2020 - 10:02:46 CST)
- Regarding adding extra strand in a beta barrel Shashank Ranjan Srivastava (Mon Mar 02 2020 - 03:59:13 CST)
- Minmax command Yogesh Sharma (Sun Mar 01 2020 - 08:38:20 CST)
- MSMS in VMD Mandar Kulkarni (Fri Feb 28 2020 - 07:59:54 CST)
- How to increase the number of core Naeem Mahmood Ashraf (Tue Feb 25 2020 - 05:47:53 CST)
- VMD doesn't handle AMBER Restart files correct viktor drobot (Sun Feb 23 2020 - 14:09:09 CST)
- Re: VMD doesn't handle AMBER Restart files correct Josh Vermaas (Sun Feb 23 2020 - 16:36:58 CST)
- Re: VMD doesn't handle AMBER Restart files correct viktor drobot (Tue Mar 03 2020 - 02:28:39 CST)
- Re: VMD doesn't handle AMBER Restart files correct viktor (Mon Oct 19 2020 - 16:02:03 CDT)
- Re: VMD doesn't handle AMBER Restart files correct John Stone (Tue Oct 20 2020 - 14:28:12 CDT)
- Re: VMD doesn't handle AMBER Restart files correct viktor (Tue Oct 20 2020 - 14:38:06 CDT)
- Re: VMD doesn't handle AMBER Restart files correct John Stone (Tue Oct 20 2020 - 15:31:19 CDT)
- Re: VMD doesn't handle AMBER Restart files correct John Stone (Sun Nov 01 2020 - 01:36:58 CDT)
- Re: VMD doesn't handle AMBER Restart files correct Josh Vermaas (Sun Feb 23 2020 - 16:36:58 CST)
- Build graphene sheets using VMD Amir Afshar (Thu Feb 20 2020 - 15:47:46 CST)
- FFTK: What is the correct charge calculation setup for carbonyl compounds David Sáez (Wed Feb 19 2020 - 10:06:54 CST)
- vmd on raspberry pi Joe Konecny (Wed Feb 19 2020 - 09:39:31 CST)
- atomselect moveby: non-numeric in vector Adupa Vasista (Tue Feb 18 2020 - 09:32:22 CST)
- SDS molecules agglomeration. Mikhail Suyetin (Tue Feb 18 2020 - 03:02:38 CST)
- Keeping molecules intact when unwrapping Minjung Godfrey (Sat Feb 15 2020 - 17:39:49 CST)
- Check and remove the overlapping between atoms Amir Afshar (Sat Feb 15 2020 - 10:26:43 CST)
- VMD rendering colors Francesco Pietra (Thu Feb 13 2020 - 11:28:10 CST)
- Visulizing subunits Francesco Pietra (Tue Feb 11 2020 - 09:11:47 CST)
- Fwd: Visulizing subunits Francesco Pietra (Tue Feb 11 2020 - 10:10:07 CST)
- Re: Fwd: Visulizing subunits John Stone (Tue Feb 11 2020 - 10:41:58 CST)
- Re: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 02:21:55 CST)
- Fwd: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 02:31:20 CST)
- Fwd: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 03:54:49 CST)
- Re: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 04:19:01 CST)
- Re: Fwd: Visulizing subunits John Stone (Wed Feb 12 2020 - 09:52:36 CST)
- Re: Fwd: Visulizing subunits Francesco Pietra (Wed Feb 12 2020 - 11:14:57 CST)
- Re: Fwd: Visulizing subunits John Stone (Tue Feb 11 2020 - 10:41:58 CST)
- Fwd: Visulizing subunits Francesco Pietra (Tue Feb 11 2020 - 10:10:07 CST)
- voltool mask usage Matthieu (Fri Feb 07 2020 - 19:11:03 CST)
- Showing TkConsole on VMD Startup David Nicholson (Fri Feb 07 2020 - 12:44:08 CST)
- Generating Images for Several Structures Thyagarajan, Raghuram (Thu Feb 06 2020 - 14:08:34 CST)
- atomselect: cannot parse selection text: Viviane Corrêa (Thu Feb 06 2020 - 11:13:25 CST)
- Re: atomselect: cannot parse selection text: John Stone (Thu Feb 06 2020 - 11:21:21 CST)
- Re: atomselect: cannot parse selection text: Viviane Corrêa (Thu Feb 06 2020 - 11:31:06 CST)
- Re: atomselect: cannot parse selection text: John Stone (Thu Feb 06 2020 - 11:40:21 CST)
- Re: atomselect: cannot parse selection text: Viviane Corrêa (Fri Feb 07 2020 - 03:37:47 CST)
- Re: atomselect: cannot parse selection text: Gianfranco Abrusci (Fri Feb 07 2020 - 05:40:54 CST)
- Re: atomselect: cannot parse selection text: Giacomo Fiorin (Fri Feb 07 2020 - 06:17:21 CST)
- Re: atomselect: cannot parse selection text: Viviane Corrêa (Fri Feb 07 2020 - 07:31:56 CST)
- Re: atomselect: cannot parse selection text: Viviane Corrêa (Thu Feb 06 2020 - 11:31:06 CST)
- Re: atomselect: cannot parse selection text: John Stone (Thu Feb 06 2020 - 11:21:21 CST)
- Gaussian16 support issue of ffTK Gawtak Kim (Wed Feb 05 2020 - 01:31:49 CST)
- Re: Gaussian16 support issue of ffTK David Sáez (Wed Feb 05 2020 - 04:07:17 CST)
- Re: Gaussian16 support issue of ffTK giuseppe_at_ks.uiuc.edu (Wed Feb 05 2020 - 10:09:08 CST)
- Re: Gaussian16 support issue of ffTK David Sáez (Wed Feb 05 2020 - 11:45:41 CST)
- Re: Gaussian16 support issue of ffTK Gawtak Kim (Wed Feb 05 2020 - 23:13:25 CST)
- Re: Gaussian16 support issue of ffTK JC Gumbart (Thu Feb 06 2020 - 19:58:52 CST)
- Re: Gaussian16 support issue of ffTK Gawtak Kim (Thu Feb 06 2020 - 22:19:58 CST)
- Re: Gaussian16 support issue of ffTK giuseppe_at_ks.uiuc.edu (Wed Feb 05 2020 - 10:09:08 CST)
- Re: Gaussian16 support issue of ffTK David Sáez (Wed Feb 05 2020 - 04:07:17 CST)
- Tk startup error in X forwarding George Mogami (Tue Feb 04 2020 - 19:44:13 CST)
- Removing water molecules from nanotubes RAHUL SURESH (Mon Feb 03 2020 - 04:56:45 CST)
- AutoPSF error vecsub Francesco Pietra (Sat Feb 01 2020 - 14:59:02 CST)
- Moving a molecule, regarding RAHUL SURESH (Sat Feb 01 2020 - 09:28:53 CST)
- compilation of vmd from source on armv8 RK3399 processor Joey Gehring (Fri Jan 31 2020 - 22:54:40 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Sat Feb 01 2020 - 05:06:47 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Tue Feb 04 2020 - 03:01:29 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Fri Feb 07 2020 - 02:19:13 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Tue Feb 11 2020 - 06:33:11 CST)
- Re: compilation of vmd from source on armv8 RK3399 processor Pawel Kedzierski (Sat Feb 01 2020 - 05:06:47 CST)
- Re: question about an error in QuickMD Joao Ribeiro (Wed Jan 29 2020 - 15:38:58 CST)
- question about an error in QuickMD soodabeh ghaffari (Wed Jan 29 2020 - 15:23:20 CST)
- radial atom distribution faride badalkhani (Mon Jan 27 2020 - 06:12:50 CST)
- FFTK dihedral parametrization David Sáez (Fri Jan 24 2020 - 23:07:00 CST)
- Re: VMD 1.9.3 compiled from source does not work Oleksii Zdorevskyi (Fri Jan 24 2020 - 11:06:12 CST)
- replacing an existig residue with a novel residue LOKI LOKI (Fri Jan 24 2020 - 00:24:36 CST)
- could not read file no atoms found error Yogesh Sharma (Thu Jan 23 2020 - 02:56:10 CST)
- writing psf file without any coordinates Miro Astore (Wed Jan 22 2020 - 19:19:44 CST)
- VMD 1.9.3 compiled from source does not work Oleksii Zdorevskyi (Wed Jan 22 2020 - 15:24:58 CST)
- stuttering movies with snapshot Sebastian Reiter (Wed Jan 22 2020 - 12:03:31 CST)
- NAMD and VMD Armv8-A Joey Gehring (Tue Jan 21 2020 - 20:24:12 CST)
- Re: NAMD and VMD Armv8-A John Stone (Wed Jan 22 2020 - 12:38:31 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 13:45:43 CST)
- Re: NAMD and VMD Armv8-A John Stone (Wed Jan 22 2020 - 14:53:10 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 15:11:10 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 23:20:58 CST)
- Re: NAMD and VMD Armv8-A John Stone (Thu Jan 23 2020 - 10:35:25 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Thu Jan 23 2020 - 10:41:21 CST)
- Re: NAMD and VMD Armv8-A John Stone (Thu Jan 23 2020 - 10:50:49 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 29 2020 - 23:38:48 CST)
- Re: NAMD and VMD Armv8-A Joey Gehring (Wed Jan 22 2020 - 13:45:43 CST)
- Re: NAMD and VMD Armv8-A John Stone (Wed Jan 22 2020 - 12:38:31 CST)
- Restrain a molecule in movie Saikat Pal (Mon Jan 20 2020 - 08:56:30 CST)
- save contact map residue-residue distance plot SHAHEE ISLAM (Mon Jan 20 2020 - 03:36:22 CST)
- conversion of vmd generated (C36) bilayer to gromac format Yogesh Sharma (Sun Jan 19 2020 - 01:04:27 CST)
- orienting aquaporin in bilayer Yogesh Sharma (Sat Jan 18 2020 - 05:53:55 CST)
- Selection by Atom Number or Fragments Roshan Shrestha (Sat Jan 18 2020 - 02:55:47 CST)
- Workshop on Free Energy calculations in Muenster March 11-13 2020 Vlad Cojocaru (Fri Jan 17 2020 - 03:32:53 CST)
- pore visualization in throughout trajectory Yogesh Sharma (Thu Jan 16 2020 - 12:43:46 CST)
- settings for labels Francesco Pietra (Thu Jan 16 2020 - 09:41:16 CST)
- Using namdEnergy from an external python script Ackad, Edward (Wed Jan 15 2020 - 13:23:09 CST)
- adding modified residue into psf file from pdb Bennion, Brian (Mon Jan 13 2020 - 17:20:32 CST)
- Unable to view protein as cartoon or trace or tube Igor Leontyev (Mon Jan 13 2020 - 03:18:45 CST)
- How to take care of charges while attaching two monomers to form a polymer chain MUNUBARTHI KRANTHI KUMAR (Thu Jan 09 2020 - 05:10:08 CST)
- ignore gpu on startup Miro Astore (Thu Jan 09 2020 - 03:07:13 CST)
- PBC wrap deleting PBC boundaries during wrapping Christian Seitz (Mon Jan 06 2020 - 18:37:42 CST)
- Re: Fwd: RMSD pluging error Joao Ribeiro (Mon Jan 06 2020 - 09:20:56 CST)
- New OSX Requires 64-bit DMG Alex Saad-Falcon (Fri Jan 03 2020 - 11:42:11 CST)
- SMD specifying atom selection surya narayanan chandrasekaran (Wed Jan 01 2020 - 22:57:48 CST)
- RMSD pluging error Francesco Pietra (Mon Dec 30 2019 - 10:16:46 CST)
- Wrong net charge after patch Reinke.Patrick_at_mh-hannover.de (Sat Dec 21 2019 - 12:26:37 CST)
- Select Nucleic Acid sequence Dominique Mias-Lucquin (Fri Dec 20 2019 - 07:37:15 CST)
- RMSD per residue vs RMSF Ashraya Ravikumar (Wed Dec 18 2019 - 12:34:19 CST)
- amber generated netcdf trajectories Vlad Cojocaru (Wed Dec 18 2019 - 07:25:11 CST)
- Re: amber generated netcdf trajectories John Stone (Wed Dec 18 2019 - 10:19:26 CST)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Thu Dec 19 2019 - 03:46:08 CST)
- Re: amber generated netcdf trajectories Luthaf (Thu Dec 19 2019 - 07:09:50 CST)
- Re: amber generated netcdf trajectories John Stone (Thu Dec 19 2019 - 08:22:10 CST)
- Re: amber generated netcdf trajectories John Stone (Mon Jan 06 2020 - 14:20:06 CST)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Mon Jan 06 2020 - 14:45:40 CST)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Tue Apr 07 2020 - 13:11:39 CDT)
- Re: amber generated netcdf trajectories John Stone (Tue Apr 07 2020 - 13:23:14 CDT)
- Re: amber generated netcdf trajectories Vlad Cojocaru (Thu Dec 19 2019 - 03:46:08 CST)
- Re: amber generated netcdf trajectories John Stone (Wed Dec 18 2019 - 10:19:26 CST)
- Installing VMD 1.9.3 on Linux - Missing Console Travis Meyer (Tue Dec 17 2019 - 15:25:27 CST)
- vmd draw material affects previous drawings Norouzi, Seyed (Mon Dec 16 2019 - 12:59:28 CST)
- Re: Charm++ fatal error: FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 NG301 (ATOMS 6407 6408) .. ERROR) Error connecting to localhost on port 3000 Joao Ribeiro (Mon Dec 16 2019 - 09:26:08 CST)
- Charm++ fatal error: FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 NG301 (ATOMS 6407 6408) .. ERROR) Error connecting to localhost on port 3000 Mubarak Alamri (Sat Dec 14 2019 - 18:30:51 CST)
- VMD 1.9.3 Linux installation Chang, Christopher (Fri Dec 13 2019 - 18:27:05 CST)
- Two questions regarding VMD 1.9.3 Windows NetCDF plugin Li, Zhen (Fri Dec 13 2019 - 16:17:30 CST)
- Re: Running RMSF script on compute canada Joao Ribeiro (Thu Dec 12 2019 - 16:18:58 CST)
- Running RMSF script on compute canada crockett c.h. (chc2g16) (Thu Dec 12 2019 - 12:43:26 CST)
- Name / permissions of Optix Diskcache Stefan Boresch (Wed Dec 11 2019 - 01:59:17 CST)
- Using RMSD for individual residues script (as seen in the NAMD tutorial) and bigdcd crockett c.h. (chc2g16) (Mon Dec 09 2019 - 17:28:46 CST)
- problem with installing OPTIX ray tracing giulia palermo (Mon Dec 09 2019 - 16:33:18 CST)
- OPTIX ray tracing option not showing up YOGESH NARKHEDE (Fri Dec 06 2019 - 13:55:37 CST)
- Files not written during OptiX ray tracing Bart Bruininks (Thu Dec 05 2019 - 10:56:54 CST)
- Loading large trajectories using multiple threads/direct calls? Bart Bruininks (Thu Dec 05 2019 - 05:54:10 CST)
- Re: Loading large trajectories using multiple threads/direct calls? John Stone (Thu Dec 05 2019 - 10:07:50 CST)
- VMD 1.9.4a38 build for macOS Catalina FX (Thu Dec 05 2019 - 04:46:46 CST)
- Re: VMD 1.9.4a38 build for macOS Catalina FX (Thu Dec 05 2019 - 07:58:46 CST)
- Re: VMD 1.9.4a38 build for macOS Catalina FX (Sat Dec 07 2019 - 07:32:21 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Sat Dec 07 2019 - 10:34:04 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sat Dec 07 2019 - 11:28:12 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Sat Dec 07 2019 - 19:20:24 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sun Dec 08 2019 - 04:31:13 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sun Dec 08 2019 - 05:10:39 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Mon Dec 09 2019 - 08:37:49 CST)
- FLTK 1.4.0 and high-DPI screens for VMD Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Mon Dec 09 2019 - 08:52:07 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sat Dec 07 2019 - 11:12:27 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina Gumbart, JC (Sat Dec 07 2019 - 16:29:06 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina FX (Sun Dec 08 2019 - 07:14:24 CST)
- Re: Re: VMD 1.9.4a38 build for macOS Catalina John Stone (Sat Dec 07 2019 - 10:34:04 CST)
- Cross correlation Paula Mihaljevic-Juric (Tue Dec 03 2019 - 08:17:02 CST)
- Using bigdcd and .tcl scripts crockett c.h. (chc2g16) (Wed Nov 27 2019 - 09:23:39 CST)
- Getting list of arguments for TCL console Edward Ditler (Tue Nov 26 2019 - 02:23:58 CST)
- Dynamical network analysis-NetworkView-error Aliakbartehrani Zahra (Mon Nov 25 2019 - 04:56:22 CST)
- how to get VMD plugins for 1.9.3 Brian Guthrie (Sun Nov 24 2019 - 22:06:40 CST)
- Filetype for Kinetic Monte Carlo Anthony Ruth (Fri Nov 22 2019 - 09:07:31 CST)
- Overlap of volume maps in VMD Saumik Sen (Thu Nov 21 2019 - 05:39:16 CST)
- Coarse grain modelling problem Hasan Mahmud (Tue Nov 19 2019 - 14:26:30 CST)
- add new color index do VMD Nuno Cerqueira (Tue Nov 19 2019 - 10:54:52 CST)
- Protein is not read in VMD Normal Mode Wizard plugin Chetna Tyagi (Mon Nov 18 2019 - 07:53:02 CST)
- Problem in rendering CG bonds with VMD leila karami (Tue Nov 12 2019 - 15:18:08 CST)
- VMD download page down davidiniming . (Mon Nov 11 2019 - 00:24:16 CST)
- volmap to find free volume MD Simulation (Fri Nov 08 2019 - 14:57:35 CST)
- specifying path of add on program Dhiraj Srivastava (Fri Nov 08 2019 - 14:57:07 CST)
- Change color scale data range William Glass (Fri Nov 08 2019 - 04:32:03 CST)
- Re: namd-l: flexible fitting for helical structure Giacomo Fiorin (Tue Nov 05 2019 - 20:09:25 CST)
- Reg: RMSF Adupa Vasista (Tue Nov 05 2019 - 10:25:13 CST)
- Compilation and installation of VMD on Mac OS Catalina fabio trovato (Sun Nov 03 2019 - 05:36:37 CST)
- Molecule occupies the lower-bottom corner of the main window fabio trovato (Sat Nov 02 2019 - 11:03:40 CDT)
- visualising the bonds which indicated by "connect" order in pdb files Hoda Shirzad (Sat Nov 02 2019 - 00:43:18 CDT)
- VMD for Mac stopped working after updating to Catalina fabio trovato (Fri Nov 01 2019 - 20:43:09 CDT)
- VMD 1.9.3 Only Loads 2 Plugins Mortimer Hemmit (Thu Oct 31 2019 - 19:23:04 CDT)
- VMD for Catalina Krishna Suresh (Wed Oct 30 2019 - 17:35:22 CDT)
- Query on preferred encoder/settings for producing MPEG files GRANT KENNY (Sun Oct 27 2019 - 10:00:27 CDT)
- catdcd Henrik Hariman (Thu Oct 24 2019 - 22:34:12 CDT)
- Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Sarah Fowler (Wed Oct 23 2019 - 11:25:03 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 13:07:18 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 14:35:24 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 15:19:38 CDT)
- Re: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Axel Kohlmeyer (Wed Oct 23 2019 - 15:49:48 CDT)
- RE: Is it possible to use VMD to plot RDFs where the cell volume/parameter changes at each time step? Vermaas, Joshua (Wed Oct 23 2019 - 13:07:18 CDT)
- VMD RMSD Plot Selection 김민재 (Mon Oct 21 2019 - 10:53:46 CDT)
- Unit for RMSD cut-off in clustering tool Neena Susan Eappen (Fri Oct 18 2019 - 10:53:58 CDT)
- query on centering the pbc and cut the shell Santhosh Ranga (Thu Oct 17 2019 - 08:28:53 CDT)
- Periodic image Samuel Canner (Wed Oct 16 2019 - 23:17:13 CDT)
- SSrestraints Paula Mihaljevic-Juric (Wed Oct 16 2019 - 12:19:19 CDT)
- regarding inner volume of a micelle Snehasis Chatterjee (Tue Oct 15 2019 - 15:38:28 CDT)
- Joining fragments Raul Araya (Mon Oct 14 2019 - 07:51:30 CDT)
- Create Straight Peptide Molefacture Protein Builder Mortimer Hemmit (Sat Oct 12 2019 - 16:31:04 CDT)
- vmd 1.9.3 won't open in mac after catalina update this morning Evelyn Maizels (Tue Oct 08 2019 - 11:15:22 CDT)
- splitting pdb Stefano Guglielmo (Tue Oct 08 2019 - 10:30:02 CDT)
- Transform structure to Bakary N'tji Diallo (Tue Oct 08 2019 - 01:20:35 CDT)
- query on how to allow the protein to interact with the water molecules Santhosh Ranga (Sun Oct 06 2019 - 23:45:36 CDT)
- Question for Installing Plugin for VMD on Mac Oscar Bastidas (Sun Oct 06 2019 - 12:41:08 CDT)
- macOS Catalina Reza Esmaeeli (Sun Oct 06 2019 - 11:09:24 CDT)
- Local isosurface Jérôme Claverie (Sun Oct 06 2019 - 04:32:47 CDT)
- NAMD .coor file to pdb, WRITE PDB ERROR. Amir Suhail (Thu Oct 03 2019 - 05:27:35 CDT)
- solvate protein in triclinic box Amir Suhail (Wed Oct 02 2019 - 10:37:26 CDT)
- lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 09:53:05 CDT)
- Re: lammps data file simulation box center and VMD origin Giacomo Fiorin (Wed Oct 02 2019 - 10:28:54 CDT)
- Re: lammps data file simulation box center and VMD origin Bassam Haddad (Wed Oct 02 2019 - 11:18:32 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 12:51:54 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 13:02:23 CDT)
- Re: lammps data file simulation box center and VMD origin Axel Kohlmeyer (Wed Oct 02 2019 - 15:07:54 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 16:11:13 CDT)
- Re: lammps data file simulation box center and VMD origin Madhur Aggarwal (Wed Oct 02 2019 - 12:51:54 CDT)
- (no subject) anupama sharma (Wed Oct 02 2019 - 07:53:27 CDT)
- GBIS parameters Paula Mihaljevic-Juric (Wed Oct 02 2019 - 07:24:17 CDT)
- network path analysis Naveen BK (Tue Oct 01 2019 - 04:52:52 CDT)
- VMD on multi-projector digital planetarium dome Peter van Heusden (Mon Sep 30 2019 - 07:53:15 CDT)
- MultiSeq: STAMP fails Aaron Oakley (Thu Sep 26 2019 - 20:40:31 CDT)
- Calculate CC in MDFF Mihaljevic-Juric Paula (Mme) (Wed Sep 25 2019 - 10:26:41 CDT)
- XenoView saved file (.car/.mdf file) Patrik Molnár (Tue Sep 24 2019 - 10:49:39 CDT)
- XenoView saved file (.car/.mdf file) Patrik Molnár (Tue Sep 24 2019 - 01:11:46 CDT)
- Decrease in CC during MDFF Paula Mihaljevic-Juric (Fri Sep 20 2019 - 04:45:38 CDT)
- AW: Re: namd-l: Is there someway to render protein picture without background color? Norman Geist (Thu Sep 19 2019 - 04:13:05 CDT)
- colormaps available for color by volume Thomas Sommerfeld (Thu Sep 19 2019 - 09:26:14 CDT)
- Parameterization strategy with fragmentation in fftk Per Larsson (Thu Sep 19 2019 - 06:14:37 CDT)
- RE: Parameterization strategy with fragmentation in fftk Vermaas, Joshua (Thu Sep 19 2019 - 11:50:39 CDT)
- Re: Parameterization strategy with fragmentation in fftk Per Larsson (Fri Sep 20 2019 - 04:31:50 CDT)
- Re: Parameterization strategy with fragmentation in fftk Gumbart, JC (Sun Sep 22 2019 - 17:04:28 CDT)
- Re: Parameterization strategy with fragmentation in fftk Per Larsson (Wed Sep 25 2019 - 02:21:09 CDT)
- RE: Parameterization strategy with fragmentation in fftk Vermaas, Joshua (Wed Sep 25 2019 - 09:38:35 CDT)
- Re: Parameterization strategy with fragmentation in fftk Per Larsson (Fri Sep 20 2019 - 04:31:50 CDT)
- RE: Parameterization strategy with fragmentation in fftk Vermaas, Joshua (Thu Sep 19 2019 - 11:50:39 CDT)
- exporting 3D model of a volume-based colored mesh Walter Rocchia (Wed Sep 18 2019 - 16:10:18 CDT)
- RE: exporting 3D model of a volume-based colored mesh Luc Boisvert (Wed Sep 18 2019 - 17:36:22 CDT)
- RE: exporting 3D model of a volume-based colored mesh Luciano Abriata (Thu Sep 19 2019 - 02:37:07 CDT)
- Re: exporting 3D model of a volume-based colored mesh John Stone (Thu Sep 19 2019 - 10:35:35 CDT)
- subopt/network analysis Tamas Hegedus (Tue Sep 17 2019 - 04:31:40 CDT)
- correct "origin" in VMD Michael Morgan (Mon Sep 16 2019 - 16:44:47 CDT)
- VMD segmentation fault (core dumped) Kliuchnikov, Evgenii (Mon Sep 16 2019 - 12:53:42 CDT)
- For calculating the number of osmolytes molecules Ashma Khan (Mon Sep 16 2019 - 04:51:51 CDT)
- VMD not reading plain mdcrd trajectories viktor drobot (Sun Sep 15 2019 - 08:43:38 CDT)
- VMD not reading plain mdcrd trajectories viktor drobot (Fri Sep 20 2019 - 09:41:40 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Fri Sep 20 2019 - 09:50:02 CDT)
- Re: VMD not reading plain mdcrd trajectories viktor drobot (Fri Sep 20 2019 - 10:51:17 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Wed Sep 25 2019 - 01:32:23 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Wed Sep 25 2019 - 08:45:14 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Wed Sep 25 2019 - 10:14:31 CDT)
- Re: VMD not reading plain mdcrd trajectories viktor drobot (Wed Sep 25 2019 - 10:16:20 CDT)
- Re: VMD not reading plain mdcrd trajectories Axel Kohlmeyer (Fri Sep 20 2019 - 10:26:47 CDT)
- Re: VMD not reading plain mdcrd trajectories John Stone (Fri Sep 20 2019 - 09:50:02 CDT)
- VMD not reading plain mdcrd trajectories viktor drobot (Fri Sep 20 2019 - 09:41:40 CDT)
- Is there someway to render protein picture without background color? jiali wang (Sat Sep 14 2019 - 20:25:54 CDT)
- Change of colour for bond distance Suchetana Gupta (Fri Sep 13 2019 - 00:26:30 CDT)
- Normal mode analysis Kliuchnikov, Evgenii (Thu Sep 12 2019 - 18:11:16 CDT)
- generation of amber topology of Carbon nanotube Shilpa Gupta (Mon Sep 09 2019 - 07:08:58 CDT)
- Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Mon Sep 09 2019 - 02:17:54 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Mon Sep 09 2019 - 13:34:33 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Mon Sep 09 2019 - 20:08:27 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Tue Sep 10 2019 - 16:05:34 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Tue Sep 17 2019 - 11:01:25 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Wed Sep 18 2019 - 20:23:54 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 #YEO JINGJIE# (Mon Sep 09 2019 - 20:08:27 CDT)
- Re: Errors in FFTK during bond opt using VMD 1.9.4a37 mariano spivak (Mon Sep 09 2019 - 13:34:33 CDT)
- perform hbond analysis in the terminal Saikat Pal (Sat Sep 07 2019 - 02:30:43 CDT)
- Querying Residue Numbers that are Alphanumeric Wallace Chan (Fri Sep 06 2019 - 12:56:35 CDT)
- Tcl foreach/for loop error Alex Hummels (Thu Sep 05 2019 - 16:28:51 CDT)
- VMD 1.9.4 crash on MacOS Adam Matěj (Thu Sep 05 2019 - 02:55:20 CDT)
- planned support for Catalina? Gumbart, JC (Thu Aug 29 2019 - 14:53:05 CDT)
- << Different values of RMSD >> I. Camps (Thu Aug 29 2019 - 12:39:09 CDT)
- ssrestraints errors ridaka jannat (Wed Aug 28 2019 - 12:01:28 CDT)
- << Loading trajectory file in Windows fails >> I. Camps (Wed Aug 28 2019 - 07:39:34 CDT)
- clustering tool is not working Saikat Pal (Tue Aug 27 2019 - 00:38:21 CDT)
- Postdoctoral researcher position in computational virology. Juan R. Perilla (Mon Aug 26 2019 - 10:32:44 CDT)
- Acetylation AutoPSF Reinke.Patrick_at_mh-hannover.de (Mon Aug 26 2019 - 10:13:01 CDT)
- Keeping Dotted Structure when Rendering using PovRay Nick Palmer (Fri Aug 23 2019 - 10:25:31 CDT)
- How the suboptimal path length is computed in NetworkView plugin Yuchen Yuan (Tue Aug 20 2019 - 20:35:51 CDT)
- Reduce size/number of nodes/image quality while rendering VRML 2.0 file Wei-Lan Lin (Tue Aug 20 2019 - 17:10:13 CDT)
- NetCDF (Amber MMTK) plugin Weatherby,Gerard (Tue Aug 20 2019 - 12:41:34 CDT)
- Mailing list for Postdoctoral opportunities in Simulations Peter Mawanga (Tue Aug 20 2019 - 01:24:38 CDT)
- Re: Extract Most Frequently found structure Joao Ribeiro (Fri Aug 16 2019 - 08:11:56 CDT)
- Extract Most Frequently found structure Neena Susan Eappen (Thu Aug 15 2019 - 22:31:08 CDT)
- Atoms on top of each in wrapped trajectory Alex Hummels (Thu Aug 15 2019 - 14:42:02 CDT)
- How the Within Command Works Alex Hummels (Thu Aug 08 2019 - 09:28:30 CDT)
- Problem in Network analysis PRITI ROY (Sun Aug 04 2019 - 01:51:30 CDT)
- wrapping with bigdcd Monika Kumari (Wed Jul 31 2019 - 00:22:34 CDT)
- Bond Length and Bond Angle as a Function of Steps ehsan shahini (Tue Jul 30 2019 - 02:29:41 CDT)
- Local isosurface Jérôme Claverie (Sat Jul 27 2019 - 13:02:14 CDT)
- Scripting with volumes Bassam Haddad (Thu Jul 25 2019 - 16:45:32 CDT)
- Fwd: Charu Sharma (JRF) (Wed Jul 24 2019 - 03:03:06 CDT)
- sub : considering waters with in 5A of solute Lara rajam (Tue Jul 23 2019 - 10:10:42 CDT)
- Periodic boundary conditions for multimeric systems Maryam X (Mon Jul 22 2019 - 07:38:47 CDT)
- followup: atomselect one liner Philippe Bopp (Sat Jul 20 2019 - 04:09:27 CDT)
- atomselect one liner Philippe Bopp (Sat Jul 20 2019 - 02:22:12 CDT)
- Creation of Thin Amorphous SiO2 using Inorganic Builder-VMD Sina Zarepakzad (Fri Jul 19 2019 - 07:32:39 CDT)
- Tcl Almira Ovagimyan (Thu Jul 18 2019 - 07:36:15 CDT)
- VMD 1.9.4a31 segmentation fault on OpenSUSE 15.1 Steven Wang (Tue Jul 16 2019 - 14:43:55 CDT)
- Re: Generate QM Region Topology in QwikMD for metal ions to perform QM/MM Joao Ribeiro (Tue Jul 16 2019 - 09:29:31 CDT)
- Generate QM Region Topology in QwikMD for metal ions to perform QM/MM Umut Gerlevik (Tue Jul 16 2019 - 05:56:15 CDT)
- (no subject) Nirmitee Mulgaonkar (Sat Jul 13 2019 - 21:45:50 CDT)
- Re: vmd moveby command inside loop Joao Ribeiro (Thu Jul 11 2019 - 09:23:32 CDT)
- vmd moveby command inside loop surya narayanan chandrasekaran (Thu Jul 11 2019 - 05:36:07 CDT)
- New version of Molefacture -small molecule modeling tool- posted Joao Ribeiro (Wed Jul 10 2019 - 16:59:50 CDT)
- New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Wed Jul 10 2019 - 15:29:12 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Sun Jul 14 2019 - 20:10:43 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Tue Jul 16 2019 - 17:18:16 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Tue Jul 16 2019 - 17:28:15 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Michael Gecht (Fri Jul 19 2019 - 04:11:33 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Tue Jul 23 2019 - 23:28:39 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Wed Jul 17 2019 - 15:43:42 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... John Stone (Fri Dec 13 2019 - 00:09:20 CST)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Tue Jul 16 2019 - 17:18:16 CDT)
- Re: New VMD 1.9.4 test versions posted with many new updates/features... Dallas Warren (Sun Jul 14 2019 - 20:10:43 CDT)
- Fwd: FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Adupa Vasista (Wed Jul 10 2019 - 10:32:16 CDT)
- Re: FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Joao Ribeiro (Wed Jul 10 2019 - 09:49:09 CDT)
- FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT 黄洋 (Wed Jul 10 2019 - 09:03:44 CDT)
- Re: How to incorporate new probe molecules in DruGui? Joao Ribeiro (Tue Jul 09 2019 - 09:07:48 CDT)
- How to incorporate new probe molecules in DruGui? Nirmitee Mulgaonkar (Sat Jul 06 2019 - 17:17:45 CDT)
- AutoPSF charge generation Adupa Vasista (Sat Jul 06 2019 - 04:28:55 CDT)
- Getting the topology,PSF files Adupa Vasista (Thu Jul 04 2019 - 14:54:25 CDT)
- Rotating a molecule to make it parallel to another bond Monika Madhavi (Wed Jul 03 2019 - 12:10:22 CDT)
- Sub: making a trajectory with frames having different number of water molecules. Lara rajam (Mon Jul 01 2019 - 19:44:18 CDT)
- using martini forcefields for DNA in NAMD Parth Chaturvedi (Mon Jul 01 2019 - 18:34:51 CDT)
- failure of charge optimization by fftk WT Ren (Sun Jun 30 2019 - 09:42:13 CDT)
- Change Label Font Gajanan Kanagalingam (Sun Jun 30 2019 - 04:14:13 CDT)
- Adaptive real time selection and coloring in default display Bart Bruininks (Thu Jun 27 2019 - 10:05:11 CDT)
- Increasing the number of bonds per atom Wasim Abdul (Thu Jun 27 2019 - 06:54:17 CDT)
- Re: Increasing the number of bonds per atom Axel Kohlmeyer (Thu Jun 27 2019 - 07:31:22 CDT)
- Re: Increasing the number of bonds per atom John Stone (Thu Jun 27 2019 - 09:09:23 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Thu Jun 27 2019 - 09:10:46 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Fri Jun 28 2019 - 01:42:49 CDT)
- RE: Increasing the number of bonds per atom Vermaas, Joshua (Fri Jun 28 2019 - 08:13:20 CDT)
- Re: Increasing the number of bonds per atom John Stone (Fri Jun 28 2019 - 11:20:52 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Fri Jun 28 2019 - 13:47:04 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Wed Jul 03 2019 - 01:09:12 CDT)
- Re: Increasing the number of bonds per atom John Stone (Wed Jul 10 2019 - 15:54:03 CDT)
- Re: Increasing the number of bonds per atom Wasim Abdul (Fri Jul 12 2019 - 04:38:31 CDT)
- Re: Increasing the number of bonds per atom John Stone (Thu Jun 27 2019 - 09:09:23 CDT)
- Re: Increasing the number of bonds per atom Axel Kohlmeyer (Thu Jun 27 2019 - 07:31:22 CDT)
- atoms within a radius cutoff and a percentage cutoff of a trajectory Amendra Fernando Hewa Dewage (Fri Jun 21 2019 - 15:27:01 CDT)
- Error compiling 1.9.3 with CUDA Weatherby,Gerard (Thu Jun 20 2019 - 12:54:53 CDT)
- Immediate postdoc opening in Bio-molecular simulation, University of Alberta, Canada Marawan Hussien (Wed Jun 19 2019 - 19:16:26 CDT)
- NAMD Developer Meeting 2019 giuseppe_at_ks.uiuc.edu (Wed Jun 19 2019 - 16:59:58 CDT)
- basal spacing Hasnain Shabbir (Wed Jun 19 2019 - 13:25:20 CDT)
- Re: Error during minimizazion - Number of atoms in fixed atoms PDB... Joao Ribeiro (Tue Jun 18 2019 - 09:38:50 CDT)
- Error during minimizazion - Number of atoms in fixed atoms PDB... Alessandro Ruda (Mon Jun 17 2019 - 17:12:26 CDT)
- How to get box information from file.dcd. Parviz Seifpanahi Shabane (Mon Jun 17 2019 - 14:16:45 CDT)
- Merging two proteins John H (Mon Jun 17 2019 - 10:56:24 CDT)
- How to calculate water density. Parviz Seifpanahi Shabane (Mon Jun 17 2019 - 09:34:57 CDT)
- catdcd error Roshan Shrestha (Sat Jun 15 2019 - 04:02:46 CDT)
- reg: PHI HEOM tool surya narayanan chandrasekaran (Tue Jun 11 2019 - 05:12:30 CDT)
- Visualization State Issue With Secondary Structure Elizabeth Wait (Thu Jun 06 2019 - 15:46:40 CDT)
- Re: namd-l: vecsub:two vectors don't have the same size Joao Ribeiro (Thu Jun 06 2019 - 09:21:58 CDT)
- VMD on Mac OS Catalina (10.15 beta): Bad CPU type in executable Tai Bui (Thu Jun 06 2019 - 08:17:58 CDT)
- Request for help in command line in VMD priyaranjini ranju (Thu Jun 06 2019 - 04:30:37 CDT)
- SASA calculation for sidechains of my peptide residues Daeun Noh (Wed Jun 05 2019 - 17:44:20 CDT)
- User-defined coloring Mustafa Tekpinar (Wed Jun 05 2019 - 10:55:24 CDT)
- Problem with visualization of structure in amber coordinate format sunyeping (Mon Jun 03 2019 - 23:32:30 CDT)
- VMD alpha builds Jérôme Hénin (Mon Jun 03 2019 - 09:01:03 CDT)
- how to draw boxes with semi-transparent sides Abolfazl Musavi (Sat Jun 01 2019 - 21:58:10 CDT)
- Re: how to draw boxes with semi-transparent sides Dallas Warren (Sun Jun 02 2019 - 17:57:21 CDT)
- Re: how to draw boxes with semi-transparent sides Strahs, Dr. Daniel Bernard (Sun Jun 02 2019 - 19:13:53 CDT)
- Re: how to draw boxes with semi-transparent sides Axel Kohlmeyer (Sun Jun 02 2019 - 20:21:05 CDT)
- Problem While Visualising the Trajectory File from LAMMPS Simulation LIGESH B (Sat Jun 01 2019 - 06:38:18 CDT)
- parameter file for dUTP sunyeping (Thu May 30 2019 - 08:03:03 CDT)
- PDB manipulation options Roshan Shrestha (Wed May 29 2019 - 12:41:37 CDT)
- Re: Re: psfgen problems of many segment complex Joao Ribeiro (Tue May 28 2019 - 08:45:26 CDT)
- Get number of fragments MD Simulation (Mon May 27 2019 - 05:57:25 CDT)
- Check if the lysine residues are deprotonated or not inside the membrane ? Roshan Shrestha (Fri May 24 2019 - 08:55:40 CDT)
- VMD installation Saikat Pal (Fri May 24 2019 - 06:55:34 CDT)
- psfgen problems of many segment complex Takeru KAMEDA (Fri May 24 2019 - 00:57:38 CDT)
- Re: psfgen problems of many segment complex Peter Freddolino (Fri May 24 2019 - 07:22:38 CDT)
- RE: psfgen problems of many segment complex Vermaas, Joshua (Fri May 24 2019 - 07:52:55 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Fri May 24 2019 - 10:14:43 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Mon May 27 2019 - 03:19:13 CDT)
- Re: psfgen problems of many segment complex Peter Freddolino (Mon May 27 2019 - 08:47:37 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Tue May 28 2019 - 08:28:06 CDT)
- Re: Re: psfgen problems of many segment complex Peter Freddolino (Tue May 28 2019 - 10:05:05 CDT)
- Re: psfgen problems of many segment complex Takeru KAMEDA (Fri May 24 2019 - 10:14:43 CDT)
- Cionize plugin Paula Mihaljevic-Juric (Tue May 21 2019 - 09:46:53 CDT)
- CG Martini File for Cholesterol Alexander Adams (Mon May 20 2019 - 10:45:50 CDT)
- volutil option xiaoyu qing (Sun May 19 2019 - 03:46:15 CDT)
- regarding cionize san kumar (Fri May 17 2019 - 09:56:50 CDT)
- Tachyon-OptiX Rendering User Defined Clipping Planes? Dallas Warren (Wed May 15 2019 - 18:22:26 CDT)
- Partial rendering of periodic cells` Nick Palmer (Wed May 15 2019 - 16:14:07 CDT)
- Alpha to beta conversion Kalyanashis Jana (Wed May 15 2019 - 04:17:08 CDT)
- Defining a layer for a micelle Nick Palmer (Mon May 13 2019 - 11:26:22 CDT)
- Re: Defining a layer for a micelle Alec Zander (Mon May 13 2019 - 12:12:42 CDT)
- RE: Defining a layer for a micelle Vermaas, Joshua (Mon May 13 2019 - 13:35:32 CDT)
- Re: Defining a layer for a micelle Nick Palmer (Tue May 14 2019 - 21:33:36 CDT)
- Re: Defining a layer for a micelle Alec Zander (Wed May 15 2019 - 08:22:50 CDT)
- RE: Defining a layer for a micelle Vermaas, Joshua (Wed May 15 2019 - 08:25:45 CDT)
- Re: Defining a layer for a micelle Giacomo Fiorin (Wed May 15 2019 - 08:47:13 CDT)
- RE: Defining a layer for a micelle Vermaas, Joshua (Mon May 13 2019 - 13:35:32 CDT)
- AW: Defining a layer for a micelle Norman Geist (Tue May 14 2019 - 01:17:08 CDT)
- Re: Defining a layer for a micelle Nick Palmer (Wed May 15 2019 - 11:08:33 CDT)
- Re: Defining a layer for a micelle Alec Zander (Mon May 13 2019 - 12:12:42 CDT)
- VMD process Windows Endri Kastrati (Fri May 10 2019 - 00:01:22 CDT)
- How to add ions to a system with non-water solvents sting (Thu May 09 2019 - 21:22:55 CDT)
- measure rmsd with non-serial atom ordering between two selections Patrick Charchar (Tue May 07 2019 - 17:54:41 CDT)
- Issues with Tcl script for MD Prep Matt Veter (Tue May 07 2019 - 13:28:49 CDT)
- Find Hydrogens not participating in H-bond Neena Susan Eappen (Wed May 01 2019 - 17:11:11 CDT)
- Amide peptide capping group lost in VMD Neena Susan Eappen (Wed May 01 2019 - 16:54:29 CDT)
- Autopsfgen verbose error output? Francesco Pietra (Wed May 01 2019 - 13:24:31 CDT)
- regarding capsid inner volume san kumar (Tue Apr 30 2019 - 16:24:23 CDT)
- MD Simulations with GROMACS/NAMD/AMBER/VMD: Seasonal School in Stockholm 10-13 June Joao Ribeiro (Tue Apr 30 2019 - 09:43:46 CDT)
- (no subject) Steven De Volder (Mon Apr 29 2019 - 08:57:40 CDT)
- Some bugs and questions about the 1.9.4a29 version Bart Bruininks (Mon Apr 29 2019 - 03:57:59 CDT)
- Query regarding H-bond Saikat Pal (Sat Apr 27 2019 - 08:06:19 CDT)
- Postdoc Position at Penn in Chromosome Modeling Hemant Kumar (Fri Apr 26 2019 - 13:41:25 CDT)
- obj/mtl and isosurface as wireframe, possibly a small bug Luciano Abriata (Fri Apr 26 2019 - 02:54:40 CDT)
- Re: Bugs and Questions Joao Ribeiro (Thu Apr 25 2019 - 13:39:32 CDT)
- Re: QwikMD Glycoside Hydrolase Tutorial step 2 Joao Ribeiro (Thu Apr 25 2019 - 13:31:40 CDT)
- QwikMD Glycoside Hydrolase Tutorial step 2 Andreas Kukol (Thu Apr 25 2019 - 10:35:16 CDT)
- Questions and Bugs McGuire, Kelly (Thu Apr 25 2019 - 10:22:33 CDT)
- Bugs and Questions McGuire, Kelly (Thu Apr 25 2019 - 10:14:02 CDT)
- VMD window doesn't show up 대학원 화학공학과 (Thu Apr 25 2019 - 06:44:52 CDT)
- Track H-bonds at a site in a trajectory Neena Susan Eappen (Wed Apr 24 2019 - 12:44:39 CDT)
- How to transfer Anton trajectory to AMBER trajectory. Parviz Seifpanahi Shabane (Mon Apr 22 2019 - 09:29:14 CDT)
- Umbrella Sampling in PLUMED + NAMD Mikhail Suyetin (Mon Apr 22 2019 - 01:33:04 CDT)
- OpenGL acceleration from eGPU? Ross Gunderson (Thu Apr 18 2019 - 10:08:22 CDT)
- OBJ rendering with multiple colors and transparency Luc Boisvert (Wed Apr 17 2019 - 17:41:52 CDT)
- Re: Problem with QwikMD automatic NTER patch Joao Ribeiro (Wed Apr 17 2019 - 16:59:41 CDT)
- Problem with QwikMD automatic NTER patch Pablo Alfonso Madero Ayala (Wed Apr 17 2019 - 16:45:37 CDT)
- Rasterized default display rendering vs ray-tracing (interactive) Bart Bruininks (Wed Apr 17 2019 - 06:02:46 CDT)
- SASA calculation with periodic images Projesh Roy (Tue Apr 16 2019 - 05:04:49 CDT)
- Re: Query regarding qwrap Jérôme Hénin (Tue Apr 16 2019 - 02:57:13 CDT)
- Question Cristian Bogaciu (Fri Apr 12 2019 - 20:44:32 CDT)
- Regarding PBC unwrap Angana Ray (Fri Apr 12 2019 - 17:44:45 CDT)
- Tcl Almira Ovagimyan (Thu Apr 11 2019 - 15:20:42 CDT)
- File Format McGuire, Kelly (Wed Apr 10 2019 - 15:15:17 CDT)
- Re: Creating and using a tk button Joao Ribeiro (Mon Apr 08 2019 - 07:25:50 CDT)
- Creating and using a tk button Ali Morshedi (Sun Apr 07 2019 - 03:34:39 CDT)
- Tk-console Anjali Patel (Sat Apr 06 2019 - 03:45:37 CDT)
- Tk-Console Anjali Patel (Sat Apr 06 2019 - 02:54:34 CDT)
- is VMD portable? Michael Morgan (Wed Apr 03 2019 - 21:04:17 CDT)
- calculate the percentage of beta-sheet and alpha helix with time evolution Saikat Pal (Wed Apr 03 2019 - 00:24:11 CDT)
- BOND distance Aashish Bhatt (Sat Mar 30 2019 - 06:23:35 CDT)
- Topotools - silicon (110) creation Sina Zarepakzad (Thu Mar 28 2019 - 11:18:43 CDT)
- Re: FFTK Water Interaction mariano spivak (Thu Mar 28 2019 - 09:25:13 CDT)
- FFTK Water Interaction McGuire, Kelly (Wed Mar 27 2019 - 23:57:34 CDT)
- Re: VMD on a WINDOWS 7 64-bit computer Stefan Boresch (Wed Mar 27 2019 - 03:01:06 CDT)
- Re: Visualization Question Joao Ribeiro (Tue Mar 26 2019 - 08:16:02 CDT)
- VMD psfgen lonepair handling Aravinda Munasinghe (Mon Mar 25 2019 - 21:37:32 CDT)
- Visualization Question McGuire, Kelly (Mon Mar 25 2019 - 19:05:45 CDT)
- Re: Idle script error Joao Ribeiro (Mon Mar 25 2019 - 09:11:52 CDT)
- Idle script error Simon Wheeler (Mon Mar 25 2019 - 06:07:58 CDT)
- Measre dihedral angle of a certain type M K (Mon Mar 25 2019 - 00:42:37 CDT)
- Re: ORCA Plugin Ernesto Aleksei Delgado Hurtado (Sun Mar 24 2019 - 11:54:16 CDT)
- ORCA Plugin McGuire, Kelly (Sat Mar 23 2019 - 23:03:50 CDT)
- VMD OrcaPlugin Bug McGuire, Kelly (Thu Mar 21 2019 - 13:49:29 CDT)
- Fwd: hydrogen bond calculations Sasthi Charan Mandal (Sun Mar 17 2019 - 03:58:09 CDT)
- hydrogen bond calculations Sasthi Charan Mandal (Sun Mar 17 2019 - 02:07:16 CDT)
- 32bit memory problems on Mac OS Tom Bartl (Sat Mar 16 2019 - 14:10:48 CDT)
- Source code for ringsize? MD Simulation (Fri Mar 15 2019 - 14:30:07 CDT)
- ORCA Orbital Bug McGuire, Kelly (Fri Mar 15 2019 - 11:02:30 CDT)
- Re: ORCA Orbital Bug John Stone (Sat Mar 16 2019 - 01:13:06 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Sat Mar 16 2019 - 18:34:51 CDT)
- Re: ORCA Orbital Bug John Stone (Sun Mar 17 2019 - 19:19:48 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Sun Mar 17 2019 - 19:58:46 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Tue Mar 19 2019 - 12:31:43 CDT)
- Re: ORCA Orbital Bug John Stone (Tue Mar 19 2019 - 12:39:43 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Tue Mar 19 2019 - 12:40:34 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Tue Mar 19 2019 - 12:43:30 CDT)
- Re: ORCA Orbital Bug John Stone (Tue Mar 19 2019 - 13:04:58 CDT)
- Re: ORCA Orbital Bug McGuire, Kelly (Sat Mar 16 2019 - 18:34:51 CDT)
- Re: ORCA Orbital Bug John Stone (Sat Mar 16 2019 - 01:13:06 CDT)
- Fixing coordinates for visualization Eugenio Gil (Thu Mar 14 2019 - 08:22:14 CDT)
- How to fix the position of the lipid bilayer in the trajectories Rabeta Yeasmin (Wed Mar 13 2019 - 14:38:00 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Giacomo Fiorin (Wed Mar 13 2019 - 15:34:12 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Axel Kohlmeyer (Wed Mar 13 2019 - 16:18:12 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Jérôme Hénin (Thu Mar 14 2019 - 07:52:07 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Giacomo Fiorin (Thu Mar 14 2019 - 09:46:31 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Rabeta Yeasmin (Thu Mar 14 2019 - 12:04:50 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Jérôme Hénin (Thu Mar 14 2019 - 12:20:05 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Rabeta Yeasmin (Thu Mar 14 2019 - 12:33:01 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Jérôme Hénin (Thu Mar 14 2019 - 12:37:58 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Axel Kohlmeyer (Wed Mar 13 2019 - 16:18:12 CDT)
- Re: How to fix the position of the lipid bilayer in the trajectories Giacomo Fiorin (Wed Mar 13 2019 - 15:34:12 CDT)
- PSF File Hasnain Shabbir (Wed Mar 13 2019 - 02:12:13 CDT)
- Research Programmer for VMD/NAMD at UIUC João Ribeiro (Tue Mar 12 2019 - 13:20:10 CDT)
- VMD Multiprocessing McGuire, Kelly (Sun Mar 10 2019 - 17:55:43 CDT)
- read vector lammps with VMD alberto (Fri Mar 08 2019 - 04:14:34 CST)
- VMD Text Mode McGuire, Kelly (Thu Mar 07 2019 - 18:02:28 CST)
- center of mass 4 rdf VMD alberto (Thu Mar 07 2019 - 09:42:48 CST)
- qwikmd can't load pdb file, locate "P:/" drive Brittany Lott (Mon Mar 04 2019 - 20:24:54 CST)
- Clipping plane redering issues Korey R (Mon Mar 04 2019 - 10:46:00 CST)
- Windows build newer than 1.9.3 Stefan Boresch (Mon Mar 04 2019 - 01:54:58 CST)
- FFTK Possible Bug McGuire, Kelly (Sat Mar 02 2019 - 20:28:38 CST)
- BIMac2019 Dusan Racko (Thu Feb 28 2019 - 08:39:19 CST)
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- GolP-CHARMM Mikhail Suyetin (Wed Feb 27 2019 - 10:24:21 CST)
- Centering an atom over the length of a trajectory Nick Palmer (Tue Feb 26 2019 - 15:11:55 CST)
- RDF witth center of mass as selection alberto (Tue Feb 26 2019 - 10:08:03 CST)
- RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Mon Feb 25 2019 - 20:40:16 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... Casalino, Lorenzo (Tue Feb 26 2019 - 13:02:03 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Tue Mar 05 2019 - 10:17:50 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Tue Mar 05 2019 - 22:00:23 CST)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Mon Mar 11 2019 - 15:35:39 CDT)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Sat Mar 16 2019 - 01:11:39 CDT)
- Updated RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... John Stone (Fri Mar 15 2019 - 16:31:14 CDT)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... Dallas Warren (Mon Apr 29 2019 - 18:52:15 CDT)
- Re: RTX-accelerated VMD 1.9.4 test build for 64-bit Linux posted... Casalino, Lorenzo (Tue Feb 26 2019 - 13:02:03 CST)
- Incorrect charge in VMD from PSF? Udaya Dahal (Mon Feb 25 2019 - 11:57:47 CST)
- Calculate the bond and angle energy of a glucosidic linkage using NAMD Energy plugin Ern Ong (Mon Feb 25 2019 - 04:39:21 CST)
- TCL For Loop Problem McGuire, Kelly (Sun Feb 24 2019 - 21:47:16 CST)
- Possible Bug McGuire, Kelly (Sat Feb 23 2019 - 00:32:30 CST)
- Query regarding contact map Saikat Pal (Sat Feb 23 2019 - 00:18:40 CST)
- Re: [EXTERNAL] RE: pbctools installation error Tripathi, Ashutosh (Fri Feb 22 2019 - 16:10:30 CST)
- pbctools installation error Tripathi, Ashutosh (Fri Feb 22 2019 - 14:27:40 CST)
- VMD RTX hardware accelerated ray tracing update! John Stone (Thu Feb 21 2019 - 23:24:40 CST)
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- Query regarding contact map Saikat Pal (Wed Feb 20 2019 - 22:56:10 CST)
- TIP4P Water box 김민재 (Tue Feb 19 2019 - 19:51:03 CST)
- Move volumetric data with their associated PDB Matthieu Benoit (Tue Feb 19 2019 - 12:21:37 CST)
- Error: invalid command name "voltool" Montserrat Fabrega Ferrer (Tue Feb 19 2019 - 10:40:59 CST)
- 1CA2 autoionization 김민재 (Tue Feb 19 2019 - 08:44:29 CST)
- Difference in ParseFEP result with versions 1.9.2 and 2.1 Amy Rice (Mon Feb 18 2019 - 15:16:00 CST)
- Re: Difference in ParseFEP result with versions 1.9.2 and 2.1 Brian Radak (Mon Feb 18 2019 - 16:31:07 CST)
- Re: Difference in ParseFEP result with versions 1.9.2 and 2.1 Jérôme Hénin (Mon Feb 18 2019 - 16:44:16 CST)
- Namdinator - a web service for automatic MDFF simulations Rune Thomas Kidmose (Mon Feb 18 2019 - 13:22:17 CST)
- Topo tools error in dihedral guess اسحاق خداپرست سیاهمزگی (Mon Feb 18 2019 - 07:06:42 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Mon Feb 18 2019 - 08:46:13 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Mon Feb 18 2019 - 13:14:00 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Tue Feb 19 2019 - 01:59:57 CST)
- Re: Topo tools error in dihedral guess اسحاق خداپرست سیاهمزگی (Tue Feb 19 2019 - 03:19:51 CST)
- Re: Topo tools error in dihedral guess اسحاق خداپرست سیاهمزگی (Wed Feb 20 2019 - 02:33:51 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Wed Feb 20 2019 - 06:12:00 CST)
- Re: Topo tools error in dihedral guess اسحاق خداپرست سیاهمزگی (Wed Feb 20 2019 - 02:45:56 CST)
- RE: Topo tools error in dihedral guess Vermaas, Joshua (Wed Feb 20 2019 - 13:50:35 CST)
- Re: Topo tools error in dihedral guess اسحاق خداپرست سیاهمزگی (Wed Feb 20 2019 - 15:49:15 CST)
- Re: Topo tools error in dihedral guess Axel Kohlmeyer (Mon Feb 18 2019 - 08:46:13 CST)
- Regarding image quality in vmd Saikat Pal (Mon Feb 18 2019 - 04:35:08 CST)
- 3d visualization setup Anthony Cruz-Balberdy (Sat Feb 16 2019 - 13:47:29 CST)
- PDB structures of peptides Mikhail Suyetin (Thu Feb 14 2019 - 03:05:15 CST)
- Cannot merge psf and pdb files using psfgen Ern Ong (Wed Feb 13 2019 - 05:12:41 CST)
- Cannot merge psf and pdb files using psfgen Ern Ong (Wed Feb 13 2019 - 03:52:42 CST)
- MSD of membrane lipids Villalain Boullon, Jose (Mon Feb 11 2019 - 10:35:46 CST)
- minimal distance between atoms in all frame alberto (Tue Feb 05 2019 - 12:04:43 CST)
- measure distance atom from plane alberto (Tue Feb 05 2019 - 04:54:20 CST)
- Coloring different isosurfaces with user-defined colors Ellis, Matthew (Sat Feb 02 2019 - 04:38:32 CST)
- QwikMD and CUDA10 jrhau lung (Thu Jan 31 2019 - 05:43:53 CST)
- calculating number of water and osmolytes molecules at particular distance from protein surface. ISHRAT JAHAN (Wed Jan 30 2019 - 23:09:41 CST)
- regarding radius of a 3D sphere san kumar (Tue Jan 29 2019 - 11:55:01 CST)
- Conversion from gromacs trr trajectory into charmm trajectory Roshan Shrestha (Mon Jan 28 2019 - 23:14:21 CST)
- Bug fixed in volmap Giacomo Fiorin (Thu Jan 24 2019 - 21:30:23 CST)
- Uncertainty estimate of g(r) using measure gofr function Jim Parker (Mon Jan 21 2019 - 21:48:42 CST)
- Pause script, make display interactive, then resume script after user input Patrick Charchar (Wed Jan 16 2019 - 19:59:54 CST)
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- regarding the coordinate transformation on a curved surface to plane surface Subbarao Kanchi (Tue Jan 08 2019 - 18:01:28 CST)
- orient package problem Prabir Khatua (Wed Jan 02 2019 - 17:15:56 CST)
- Parsing error in TkConsole Seibold, Steve Allan (Wed Jan 02 2019 - 13:44:08 CST)
- Calculation of gofr for non-orthorhombic boxes HEMANTH H 18310019 (Tue Jan 01 2019 - 02:55:14 CST)
- Problem in loading netcdf file from LAMMPS output in VMD LIGESH B (Tue Jan 01 2019 - 00:05:34 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Tue Jan 01 2019 - 23:52:35 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 11:34:55 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Fri Jan 04 2019 - 11:43:06 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 12:10:52 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Fri Jan 04 2019 - 12:36:22 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 12:47:28 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD John Stone (Fri Jan 04 2019 - 11:34:55 CST)
- Re: Problem in loading netcdf file from LAMMPS output in VMD Axel Kohlmeyer (Tue Jan 01 2019 - 23:52:35 CST)
- h-bond soroush ziaei (Sat Dec 22 2018 - 17:04:03 CST)
- Problems with rendering with POV-Ray Oliver Srensen Siig (Sat Dec 22 2018 - 07:12:41 CST)
- beta barrel structure generation Prabir Khatua (Fri Dec 21 2018 - 16:41:42 CST)
- MDFF through VMD Error FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE OT Somnath Dutta (Fri Dec 21 2018 - 09:39:40 CST)
- Dynamical Network Analysis Александр Кошкаров (Thu Dec 20 2018 - 02:53:47 CST)
- atom types depend on PSF/PDB reading order Gumbart, JC (Wed Dec 19 2018 - 18:46:23 CST)
- vrpn and vmd 1.9.3 - which version to use ? Paulo E. Abreu (Wed Dec 19 2018 - 03:41:42 CST)
- ring-like structure formation with distance restraints Prabir Khatua (Tue Dec 18 2018 - 21:32:48 CST)
- Error in Loading atom_style hybrid LAMMPS data file in VMD LIGESH B (Mon Dec 17 2018 - 08:27:34 CST)
- fftk problem in opt. bonded step Nicolás Veiga (Fri Dec 14 2018 - 14:57:59 CST)
- ARM Joey Gehring (Thu Dec 13 2018 - 10:29:58 CST)
- Assertion failure OS X 10.14 Per Larsson (Thu Dec 13 2018 - 03:11:53 CST)
- Free Energy Perturbation Analysis using VMD HOCHEOL LIM (Thu Dec 13 2018 - 01:24:02 CST)
- Heme PSF file generation and hydrogen peroxide parameter files HOCHEOL LIM (Thu Dec 13 2018 - 01:13:53 CST)
- Fwd: Extensions not working Francesco Pietra (Sun Dec 09 2018 - 01:29:24 CST)
- Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 01:45:08 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 07:22:26 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 10:54:14 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 12:54:13 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 12:55:30 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 14:06:47 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Manish Agarwal (Tue Dec 04 2018 - 10:54:14 CST)
- Re: Patch DISU fails for MARTINIZED protein segments Peter Freddolino (Tue Dec 04 2018 - 07:22:26 CST)
- vmd error time too large/small to represent Stephani Macalino (Mon Dec 03 2018 - 20:49:06 CST)
- regarding h-bod calculation in tk console Jai Kumar (Sun Dec 02 2018 - 00:17:49 CST)
- Extensions not working Francesco Pietra (Sat Dec 01 2018 - 09:17:03 CST)
- mol representation Isosurface - Parameters? MD Simulation (Fri Nov 30 2018 - 06:36:17 CST)
- selection of water molecules around particular number of atoms Ashma Khan (Wed Nov 28 2018 - 23:54:42 CST)
- VMD - Measure water flow The Cromicus Productions (Wed Nov 28 2018 - 11:41:40 CST)
- REG building non standard solvent simulation box. surya narayanan chandrasekaran (Wed Nov 28 2018 - 03:27:16 CST)
- implicit membrane in QwikMD? Armando Jerome de Jesus (Tue Nov 27 2018 - 09:37:15 CST)
- Inverted measure fit of ring atoms mish (Tue Nov 27 2018 - 08:58:09 CST)
- How to add bond between atoms of same same or type in every molecule Remya Ann (Tue Nov 27 2018 - 07:14:59 CST)
- Cant use NAMDplot to plot Artur Duque Rossi (Sat Nov 24 2018 - 16:34:18 CST)
- Compiling VMD 1.9.3 64-bit on MacOS 10.13.6 Alex Sha (Fri Nov 23 2018 - 00:48:06 CST)
- gopython with python3 Guilherme da Silva (Thu Nov 22 2018 - 11:53:11 CST)
- CUDA 10 Jérôme Hénin (Thu Nov 22 2018 - 06:47:27 CST)
- Creating a pdb of periodic images of a unit cell Monika Madhavi (Tue Nov 20 2018 - 23:19:09 CST)
- VMD crashes when drag-and-dropping files in Windows Oleg Stroganov (Tue Nov 13 2018 - 04:16:09 CST)
- Patching for bond between protein and organic ligand Francesco Pietra (Mon Nov 12 2018 - 01:50:29 CST)
- RE: Patching for bond between protein and organic ligand Vermaas, Joshua (Mon Nov 12 2018 - 11:28:21 CST)
- Re: Patching for bond between protein and organic ligand Brian Radak (Mon Nov 12 2018 - 12:19:08 CST)
- Re: Patching for bond between protein and organic ligand Francesco Pietra (Tue Nov 13 2018 - 01:13:54 CST)
- Re: Patching for bond between protein and organic ligand Brian Radak (Tue Nov 13 2018 - 08:37:37 CST)
- Re: Patching for bond between protein and organic ligand Gumbart, James C (Tue Nov 13 2018 - 19:54:19 CST)
- Re: Patching for bond between protein and organic ligand Brian Radak (Mon Nov 12 2018 - 12:19:08 CST)
- RE: Patching for bond between protein and organic ligand Vermaas, Joshua (Mon Nov 12 2018 - 11:28:21 CST)
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- autopsf ERROR FRANCESCO TORRICELLA (Thu Nov 08 2018 - 08:58:57 CST)
- Create new atoms Michail Lazaratos (Wed Nov 07 2018 - 13:45:21 CST)
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- VMD does not display bonds Behnam Ghalami (Wed Nov 07 2018 - 02:26:03 CST)
- Save specific atoms from multiple frame pdb Abhik Ghosh Moulick (Wed Nov 07 2018 - 01:33:10 CST)
- PSFgen failure Anatoly Chernyshev (Mon Nov 05 2018 - 07:13:11 CST)
- Question McGuire, Kelly (Sun Nov 04 2018 - 17:16:27 CST)
- creating topology for a unique structure soroush ziaei (Sun Nov 04 2018 - 05:49:31 CST)
- unknown residue type Francesco Pietra (Sun Nov 04 2018 - 03:08:49 CST)
- Newby unable to see secondary structure in New Cartoon Gary Turner (Sat Nov 03 2018 - 12:40:19 CDT)
- Building amino acid simulation box. surya narayanan chandrasekaran (Thu Nov 01 2018 - 23:45:39 CDT)
- Dynamic Bonds Question McGuire, Kelly (Wed Oct 31 2018 - 12:58:01 CDT)
- selecting residues in a heterodimer Raag Saluja (Mon Oct 29 2018 - 01:42:50 CDT)
- Problem of saving .trj file in vmd Sasthi Charan Mandal (Sat Oct 27 2018 - 08:00:43 CDT)
- Unknown atom type CG205 with CGenFF by psfgen Francesco Pietra (Fri Oct 26 2018 - 10:09:08 CDT)
- Domain error in parseFEP Kevin Song (Tue Oct 23 2018 - 11:58:47 CDT)
- Problems with CGenFF and oxetane ring Francesco Pietra (Tue Oct 23 2018 - 11:04:27 CDT)
- Pressure Control Norge Cruz Hernández (Tue Oct 23 2018 - 09:26:09 CDT)
- AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Mon Oct 22 2018 - 08:58:12 CDT)
- Re: AutoPSF error with glycana (end of segment error) João Ribeiro (Mon Oct 22 2018 - 10:05:01 CDT)
- Re: AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Mon Oct 22 2018 - 10:16:32 CDT)
- Re: AutoPSF error with glycana (end of segment error) João Ribeiro (Mon Oct 22 2018 - 11:46:39 CDT)
- Sv: AutoPSF error with glycana (end of segment error) Rune Thomas Kidmose (Mon Oct 22 2018 - 15:45:04 CDT)
- Re: AutoPSF error with glycana (end of segment error) João Ribeiro (Mon Oct 22 2018 - 16:22:32 CDT)
- Re: AutoPSF error with glycana (end of segment error) Rune Thomas Kidmose (Tue Oct 23 2018 - 10:21:44 CDT)
- Re: AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Thu Oct 25 2018 - 07:25:24 CDT)
- Re: AutoPSF error with glycana (end of segment error) Steinar Halldorsson (Mon Oct 22 2018 - 10:16:32 CDT)
- Re: AutoPSF error with glycana (end of segment error) João Ribeiro (Mon Oct 22 2018 - 10:05:01 CDT)
- Measure Center Question McGuire, Kelly (Sat Oct 20 2018 - 18:20:57 CDT)
- error in analyse fep simulation (parse fep) soroush ziaei (Fri Oct 19 2018 - 08:54:44 CDT)
- Ambient/direct light missing after adding Glow lights to a tachyon scene with glow_lights.tcl Oliver Grant (Fri Oct 19 2018 - 06:04:37 CDT)
- Dipole Watcher Plugin - atom selection not updated at every frame when drawing dipoles Eric Lang (Thu Oct 18 2018 - 06:31:41 CDT)
- 3D hardware Rubner, Oliver (Wed Oct 17 2018 - 03:52:54 CDT)
- psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 10:13:08 CDT)
- Re: psfgen patching protein-ligand João Ribeiro (Tue Oct 16 2018 - 10:21:24 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 10:47:35 CDT)
- Re: psfgen patching protein-ligand João Ribeiro (Tue Oct 16 2018 - 10:56:05 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 15:10:45 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Mon Oct 22 2018 - 12:03:17 CDT)
- Fwd: psfgen patching protein-ligand Francesco Pietra (Mon Oct 22 2018 - 12:07:43 CDT)
- Re: psfgen patching protein-ligand João Ribeiro (Mon Oct 22 2018 - 12:53:34 CDT)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 23 2018 - 08:50:35 CDT)
- Re: psfgen patching protein-ligand João Ribeiro (Mon Nov 12 2018 - 09:35:10 CST)
- Re: psfgen patching protein-ligand Francesco Pietra (Mon Nov 12 2018 - 10:23:41 CST)
- Fwd: psfgen patching protein-ligand Francesco Pietra (Mon Nov 12 2018 - 10:27:33 CST)
- Re: psfgen patching protein-ligand Francesco Pietra (Tue Oct 16 2018 - 10:47:35 CDT)
- Re: psfgen patching protein-ligand João Ribeiro (Tue Oct 16 2018 - 10:21:24 CDT)
- Library to display molecule into Qt widget Endri Kastrati (Thu Oct 11 2018 - 20:00:27 CDT)
- Display representations with Tk Console Michail Lazaratos (Thu Oct 11 2018 - 12:19:13 CDT)
- VMD Tk Console Columns McGuire, Kelly (Wed Oct 10 2018 - 14:26:18 CDT)
- Advantages of new RTX/Turing NVidia cards? Pawel Kedzierski (Wed Oct 10 2018 - 03:55:13 CDT)
- IFD complex for solvation Stephani Macalino (Tue Oct 09 2018 - 02:08:30 CDT)
- What does pbc get -now do Mayank (Sun Oct 07 2018 - 09:36:41 CDT)
- topotools in place of patching Francesco Pietra (Thu Oct 04 2018 - 09:07:48 CDT)
- Fwd: Diffusion coefficient calculation Kinkini Jayasundara (Sat Sep 29 2018 - 11:30:47 CDT)
- RTX for raytracing Stefan Doerr (Thu Sep 27 2018 - 05:20:51 CDT)
- measuring all the bonds and angles in /Tcl hosein geraili (Tue Sep 25 2018 - 14:48:52 CDT)
- RBCG Builder Lewis, Kimberly A (Mon Sep 24 2018 - 13:27:06 CDT)
- First "Hands-On" Workshop on Structural DNA Nanotechnology João Ribeiro (Mon Sep 24 2018 - 09:13:30 CDT)
- Mail about TCL script subramanian vidhyasankar (Sun Sep 23 2018 - 06:36:17 CDT)
- reg membrane hydration using tcl script of vmd subramanian vidhyasankar (Sat Sep 22 2018 - 08:14:09 CDT)
- mail about renumbering of residues subramanian vidhyasankar (Sat Sep 22 2018 - 08:08:18 CDT)
- Query about PME data in .dx format Peter Mawanga (Fri Sep 14 2018 - 04:32:10 CDT)
- problem with Catdcd Sonibare, Kolawole (Mon Sep 10 2018 - 14:13:34 CDT)
- Enhanced Sampling and Free-Energy Calculations Lectures João Ribeiro (Mon Sep 10 2018 - 12:02:42 CDT)
- problem of calculating hydrogen bonds Sasthi Charan Mandal (Sat Sep 08 2018 - 02:19:13 CDT)
- Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 04:30:51 CDT)
- Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 12:42:29 CDT)
- RE: Re: Error at Dihedral Optimization using fftk Vermaas, Joshua (Fri Sep 07 2018 - 13:32:40 CDT)
- Re: Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 14:08:03 CDT)
- Re: Re: Error at Dihedral Optimization using fftk JC Gumbart (Sun Sep 09 2018 - 10:52:30 CDT)
- Re: Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Sun Sep 09 2018 - 13:19:36 CDT)
- Re: Re: Error at Dihedral Optimization using fftk JC Gumbart (Sun Sep 09 2018 - 13:22:22 CDT)
- RE: Re: Error at Dihedral Optimization using fftk Vermaas, Joshua (Fri Sep 07 2018 - 13:32:40 CDT)
- Re: Error at Dihedral Optimization using fftk Pawel Kedzierski (Wed Dec 12 2018 - 10:09:45 CST)
- Re: Error at Dihedral Optimization using fftk RABIUL ISLAM (Fri Sep 07 2018 - 12:42:29 CDT)
- RMSD for specific residue abhik.ghosh_at_bose.res.in (Wed Sep 05 2018 - 09:42:29 CDT)
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- RE: truncated atom types with fftk v.1.93 - Resolved ABEL Stephane (Mon Aug 27 2018 - 10:45:37 CDT)
- truncated atom types with fftk v.1.93 ABEL Stephane (Mon Aug 27 2018 - 08:48:47 CDT)
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- Re: Nvidia 3D vision not working in Windows 10 John Stone (Mon Aug 27 2018 - 10:10:00 CDT)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 10:20:02 CDT)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Mon Aug 27 2018 - 10:22:28 CDT)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 10:32:30 CDT)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Wed Mar 06 2019 - 12:25:49 CST)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Wed Mar 06 2019 - 23:43:53 CST)
- Re: Nvidia 3D vision not working in Windows 10 Carlos Simmerling (Mon Aug 27 2018 - 10:20:02 CDT)
- Re: Nvidia 3D vision not working in Windows 10 John Stone (Mon Aug 27 2018 - 10:10:00 CDT)
- (no subject) CMP (Mon Aug 27 2018 - 05:45:29 CDT)
- Solvate Plugin Error - Reg Mani Kandan (Mon Aug 27 2018 - 04:31:18 CDT)
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- Network Path Backtraces amin sagar (Sat Aug 18 2018 - 13:13:41 CDT)
- h-bond water molecules Adriano Santana Sanchez (Sat Aug 18 2018 - 08:54:38 CDT)
- Determining energies between two different molecules Nick Palmer (Thu Aug 16 2018 - 10:58:05 CDT)
- Atomselection with the position selected conditions inside the loop is not working properly fan li (Thu Aug 16 2018 - 05:47:22 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Ashar Malik (Thu Aug 16 2018 - 06:50:38 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Axel Kohlmeyer (Thu Aug 16 2018 - 08:14:03 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly João Ribeiro (Thu Aug 16 2018 - 08:23:51 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Giacomo Fiorin (Thu Aug 16 2018 - 09:09:27 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly fan li (Thu Aug 16 2018 - 10:24:54 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly Ashar Malik (Thu Aug 16 2018 - 11:22:21 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly fan li (Thu Aug 16 2018 - 12:18:18 CDT)
- Re: Atomselection with the position selected conditions inside the loop is not working properly João Ribeiro (Thu Aug 16 2018 - 08:23:51 CDT)
- Userani.tcl script jumps frame after no play sperez14_at_us.es (Wed Aug 15 2018 - 09:26:52 CDT)
- Unexpected results after loop added to the script fan li (Tue Aug 14 2018 - 11:32:26 CDT)
- display residues near ligand Graham Jackson (Sat Aug 11 2018 - 02:38:55 CDT)
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- Updates McGuire, Kelly (Sun Aug 05 2018 - 14:06:26 CDT)
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- Vibrational spectra script Aashish Bhatt (Sat Aug 04 2018 - 03:59:48 CDT)
- Charge opt in FFTK Ushasi Pramanik 1710228 (Fri Aug 03 2018 - 05:25:34 CDT)
- Alascan, psfgen errors Matthew Kenney (Thu Aug 02 2018 - 17:19:16 CDT)
- Please remove me from mailing list Christine Horejs (Wed Aug 01 2018 - 04:59:12 CDT)
- Rendering incompletion during Tachyon rendering Tony Myung Keun Cho (Tue Jul 31 2018 - 19:22:46 CDT)
- request for provide a script of rmsf Sasthi Charan Mandal (Tue Jul 31 2018 - 10:21:20 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Tue Jul 31 2018 - 19:40:09 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 01 2018 - 03:17:04 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Wed Aug 01 2018 - 03:39:39 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 01 2018 - 09:53:16 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Wed Aug 01 2018 - 10:22:57 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Thu Aug 02 2018 - 00:17:46 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 29 2018 - 11:45:47 CDT)
- Re: request for provide a script of rmsf Sasthi Charan Mandal (Wed Aug 01 2018 - 03:17:04 CDT)
- Re: request for provide a script of rmsf Ashar Malik (Tue Jul 31 2018 - 19:40:09 CDT)
- Solvate plugin Error - reg Mani Kandan (Tue Jul 31 2018 - 06:24:53 CDT)
- VR McGuire, Kelly (Mon Jul 30 2018 - 19:38:07 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 14:03:29 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 14:06:36 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 14:24:17 CDT)
- Re: VR Philip Loche (Tue Jul 31 2018 - 15:24:46 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 15:40:27 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 16:39:23 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 21:00:49 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 21:37:13 CDT)
- Re: VR Philip Loche (Wed Aug 01 2018 - 02:32:42 CDT)
- Re: VR McGuire, Kelly (Tue Jul 31 2018 - 14:06:36 CDT)
- Re: VR Alin Marin Elena - UKRI STFC (Wed Aug 22 2018 - 15:49:22 CDT)
- Re: VR John Stone (Tue Jul 31 2018 - 14:03:29 CDT)
- "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL, September 10-14, 2018 João Ribeiro (Mon Jul 30 2018 - 16:15:45 CDT)
- Force Field Toolkit (ffTK) Norge Cruz Hernández (Mon Jul 30 2018 - 05:32:39 CDT)
- request for provide a script of rmsf Sasthi Charan Mandal (Mon Jul 30 2018 - 04:24:22 CDT)
- split multi frame pdb abhik.ghosh_at_bose.res.in (Mon Jul 30 2018 - 00:18:10 CDT)
- Farewell VMD Vlastimil Zíma (Sun Jul 29 2018 - 14:02:54 CDT)
- reg compilation of vmd 1.9.3 subramanian vidhyasankar (Sun Jul 29 2018 - 08:38:56 CDT)
- Mail reg compilation of vmd 1.9.3 plugin subramanian vidhyasankar (Sat Jul 28 2018 - 03:10:19 CDT)
- Fusing proteins together Nick Palmer (Thu Jul 26 2018 - 13:53:48 CDT)
- Porcupine plot with nmwiz Funzo_at_seznam.cz (Thu Jul 26 2018 - 09:34:19 CDT)
- Timeline error Jordi Bujons (Tue Jul 24 2018 - 12:13:01 CDT)
- psfgen building fails due to locale Stefan Doerr (Mon Jul 23 2018 - 07:28:16 CDT)
- IR spectral density calculation Aashish Bhatt (Sun Jul 22 2018 - 12:53:34 CDT)
- (no subject) abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:16:07 CDT)
- (no subject) abhik.ghosh_at_bose.res.in (Sun Jul 22 2018 - 05:00:41 CDT)
- Building Al2O3 or Fe2O3 Morrissey, Liam S. (Sat Jul 21 2018 - 15:59:29 CDT)
- New Cartoon and Simulation Question McGuire, Kelly (Wed Jul 18 2018 - 19:18:34 CDT)
- Deleting a given bond type by topo tool Amir Hossein Saeedi Dehaghani (Wed Jul 18 2018 - 07:15:40 CDT)
- Fwd: problemas con la opt de los enlaces dalpizar_at_fbio.uh.cu (Tue Jul 17 2018 - 15:05:07 CDT)
- Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 03:59:29 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 08:00:32 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 08:56:10 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 09:37:37 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 09:47:20 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 09:52:42 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 10:16:30 CDT)
- Re: Autopsf CGenFF input Stamatia Zavitsanou (Tue Jul 17 2018 - 08:56:10 CDT)
- Re: Autopsf CGenFF input Peter Freddolino (Tue Jul 17 2018 - 08:00:32 CDT)
- Deleting a given bond type by topo tool Amir Hossein Saeedi Dehaghani (Tue Jul 17 2018 - 02:58:20 CDT)
- Dowser Availability McGuire, Kelly (Mon Jul 16 2018 - 14:54:05 CDT)
- Fully Visual Docker Container for VMD Matthew Kenney (Mon Jul 16 2018 - 10:00:16 CDT)
- maiil about installation of vmd1.9.3 from source code subramanian vidhyasankar (Fri Jul 13 2018 - 09:47:28 CDT)
- Issue with visualizing model Yu,Wenjin (Thu Jul 12 2018 - 10:35:57 CDT)
- Problem with parametrization using ffTK Ushasi Pramanik 1710228 (Thu Jul 12 2018 - 04:58:55 CDT)
- Reopening the Discussion on visual VMD container: GLX now enabled Matthew Kenney (Tue Jul 10 2018 - 16:47:00 CDT)
- Fixing Martini PSF Ganne, Akshatha (Mon Jul 09 2018 - 18:00:38 CDT)
- Gamma Silicon Nitrite Crystal - Reg Mani Kandan (Mon Jul 09 2018 - 12:48:32 CDT)
- Tachyon with DoF ignores FocalLength Peter Kroon (Mon Jul 09 2018 - 09:36:14 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Wed Aug 01 2018 - 03:48:45 CDT)
- RE: Re: Tachyon with DoF ignores FocalLength Vermaas, Joshua (Wed Aug 01 2018 - 06:02:13 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength John Stone (Thu Aug 02 2018 - 11:58:08 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength Peter Kroon (Fri Aug 03 2018 - 04:17:28 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength John Stone (Fri Aug 03 2018 - 08:30:47 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength RABIUL ISLAM (Fri Aug 03 2018 - 09:50:37 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength Peter Kroon (Fri Aug 03 2018 - 09:32:48 CDT)
- Re: Re: Tachyon with DoF ignores FocalLength RABIUL ISLAM (Sat Aug 04 2018 - 07:23:56 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Mon Aug 27 2018 - 05:40:52 CDT)
- Re: Tachyon with DoF ignores FocalLength John Stone (Mon Aug 27 2018 - 09:58:44 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Tue Aug 28 2018 - 03:51:13 CDT)
- Re: Tachyon with DoF ignores FocalLength Peter Kroon (Wed Aug 01 2018 - 03:48:45 CDT)
- "Prepare Parameterization from CGenFF Program Output" in ffTK Ushasi Pramanik 1710228 (Sun Jul 08 2018 - 23:04:00 CDT)
- Merge Structures Bug McGuire, Kelly (Fri Jul 06 2018 - 16:34:43 CDT)
- Issue with NVIDIA GPU Cloud VMD Container Matthew Kenney (Fri Jul 06 2018 - 15:50:59 CDT)
- Importing .str file generated by ParamChem to molefacture in VMD Ushasi Pramanik 1710228 (Fri Jul 06 2018 - 05:43:07 CDT)
- Re: Problem with QwikMD and glycans João Ribeiro (Thu Jul 05 2018 - 13:28:00 CDT)
- Membrane Protein Tutorial Bug McGuire, Kelly (Thu Jul 05 2018 - 10:24:41 CDT)
- Ph.D. candidate position in biomolecular modeling or bioinformatics Jan Brezovsky (Wed Jul 04 2018 - 05:33:36 CDT)
- grid mode in vmd? Murpholino Peligro (Tue Jul 03 2018 - 18:26:11 CDT)
- Possible to run VMD in parallel - Reg Mani Kandan (Tue Jul 03 2018 - 13:42:21 CDT)
- How to define charge group and pass it to topo writegmxtop fan li (Mon Jul 02 2018 - 05:17:56 CDT)
- distance-based selections applied to velDCD Mike McCallum (Fri Jun 29 2018 - 16:01:56 CDT)
- Different colors of a residue at different frames Cruzeiro,Vinicius Wilian D (Thu Jun 28 2018 - 16:13:29 CDT)
- Inorganic builder in no display mode - Reg Mani Kandan (Wed Jun 27 2018 - 10:32:00 CDT)
- Error in PCA analysis Aravind Ravichandran (Wed Jun 27 2018 - 05:26:18 CDT)
- Error: not possible to build nodeSelString: () and () Sophie Mader (Tue Jun 26 2018 - 04:27:04 CDT)
- Frame out of range when trying to edit .psf Francesco Pietra (Sat Jun 23 2018 - 11:46:37 CDT)
- catdcd error opening reading index file Francesco Pietra (Sat Jun 23 2018 - 04:11:57 CDT)
- Strange Bond Behavior Question McGuire, Kelly (Fri Jun 22 2018 - 15:42:20 CDT)
- Re: namd-l: Strange Bond Behavior Question João Ribeiro (Fri Jun 22 2018 - 16:08:07 CDT)
- Opt. Bonded: Angle in multiple rings dalpizar_at_fbio.uh.cu (Fri Jun 22 2018 - 11:15:59 CDT)
- vmd keeps crashing Graham Jackson (Fri Jun 22 2018 - 04:31:28 CDT)
- Solvation using Charmm36 TIP3P Muthukumaran Rajagopalan (Fri Jun 22 2018 - 02:31:54 CDT)
- Z-axis data extraction Aashish Bhatt (Thu Jun 21 2018 - 23:13:00 CDT)
- Amber rst7 not loading Sophia Hirakis (Wed Jun 20 2018 - 20:25:28 CDT)
- (no subject) Mohammadi, Mohammadjavad (Wed Jun 20 2018 - 20:12:40 CDT)
- QwikMD Restraints Question McGuire, Kelly (Wed Jun 20 2018 - 17:37:28 CDT)
- Atom Selections in QwikMD SM Bargeen A Turzo (Wed Jun 20 2018 - 14:28:03 CDT)
- Connecting new residues to old residues in topology file Nick Palmer (Wed Jun 20 2018 - 13:28:08 CDT)
- Vmd tcl versions Bennion, Brian (Mon Jun 18 2018 - 11:04:01 CDT)
- mail about installation of vmd 1.9 in cluster subramanian vidhyasankar (Mon Jun 18 2018 - 02:20:09 CDT)
- z-direction selection Aashish Bhatt (Mon Jun 18 2018 - 00:33:50 CDT)
- (no subject) shyam sharma (Sun Jun 17 2018 - 03:24:35 CDT)
- tcl script to pull pdb file from tgz Bennion, Brian (Fri Jun 15 2018 - 10:08:50 CDT)
- Easy way to add hydrogens and get their internal coordinates? Nick Palmer (Thu Jun 14 2018 - 13:27:56 CDT)
- ribbon on different thickness Graham Jackson (Wed Jun 13 2018 - 10:29:45 CDT)
- Chiral indices in VMD Nanotube Builder Akif Ramzan (Wed Jun 13 2018 - 08:10:11 CDT)
- How to apply uniform surface charge ? Mani Kandan (Mon Jun 11 2018 - 22:37:08 CDT)
- topotools/topogromacs Francesco Pietra (Mon Jun 11 2018 - 15:30:51 CDT)
- Re: topotools/topogromacs John Stone (Mon Jun 11 2018 - 15:53:42 CDT)
- RE: topotools/topogromacs Vermaas, Joshua (Wed Jun 13 2018 - 04:53:57 CDT)
- Re: topotools/topogromacs Francesco Pietra (Wed Jun 13 2018 - 08:42:25 CDT)
- RE: topotools/topogromacs Vermaas, Joshua (Wed Jun 13 2018 - 09:10:27 CDT)
- Re: topotools/topogromacs Francesco Pietra (Wed Jun 13 2018 - 09:30:15 CDT)
- Fwd: topotools/topogromacs Francesco Pietra (Wed Jun 13 2018 - 09:35:04 CDT)
- RE: topotools/topogromacs Vermaas, Joshua (Wed Jun 13 2018 - 04:53:57 CDT)
- Re: topotools/topogromacs John Stone (Mon Jun 11 2018 - 15:53:42 CDT)
- Protein mutation issues Bose, Ritwika (Sun Jun 10 2018 - 23:27:29 CDT)
- (no subject) shyam sharma (Sat Jun 09 2018 - 12:14:07 CDT)
- Calculation of pair distribution function shyam sharma (Sat Jun 09 2018 - 00:19:21 CDT)
- vmd startup sequence Goedde, Chris (Thu Jun 07 2018 - 17:03:51 CDT)
- Custom VMD script development service for fee Neeraj (Thu Jun 07 2018 - 15:08:32 CDT)
- VMD Update Questions McGuire, Kelly (Tue Jun 05 2018 - 12:11:42 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 10:32:19 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 12:05:08 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 14:08:48 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 14:48:55 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 15:05:52 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 15:07:12 CDT)
- Re: VMD Update Questions Axel Kohlmeyer (Mon Jun 11 2018 - 15:11:52 CDT)
- Re: VMD Update Questions John Stone (Tue Jun 12 2018 - 15:54:48 CDT)
- Re: VMD Update Questions McGuire, Kelly (Mon Jun 11 2018 - 12:05:08 CDT)
- Re: VMD Update Questions John Stone (Mon Jun 11 2018 - 10:32:19 CDT)
- Flipping a molecule around its geometrical center Lorenzo Casalino (Mon Jun 04 2018 - 21:38:37 CDT)
- Issue with "measure rmsf" command Peter Mawanga (Mon Jun 04 2018 - 10:49:11 CDT)
- problem with mol IDs when running script from same VMD session. Rune Thomas Kidmose (Sun Jun 03 2018 - 14:02:31 CDT)
- NAMD and FFTK on a Mac tclick_at_nctu.edu.tw (Fri Jun 01 2018 - 07:24:41 CDT)
- VMD 1.9.4 for Windows? Pawel Kedzierski (Fri Jun 01 2018 - 02:54:26 CDT)
- PMF Question McGuire, Kelly (Thu May 31 2018 - 13:39:07 CDT)
- Re: Alignment with RMSD trajectory tool Ashar Malik (Tue May 29 2018 - 21:00:08 CDT)
- Alignment with RMSD trajectory tool Gulce Kalyoncu (Tue May 29 2018 - 20:42:15 CDT)
- ABF lowerboundary upperboundary McGuire, Kelly (Tue May 29 2018 - 13:54:39 CDT)
- Large number of harmonic distance restraints Nick Palmer (Tue May 29 2018 - 11:04:27 CDT)
- alpha-quartz with hydrogen bond Suu Kyi, Myat Noe (Tue May 29 2018 - 10:46:49 CDT)
- Reading DL_POLY trajectory Ali Ahmed (Sat May 26 2018 - 20:02:17 CDT)
- ABF Question McGuire, Kelly (Sat May 26 2018 - 13:44:20 CDT)
- Creating a constraints file(.pdb) from NMR constraints file(.mr) Nick Palmer (Thu May 24 2018 - 15:40:08 CDT)
- alter crosshair appearance Daniel Strahs (Thu May 24 2018 - 12:48:30 CDT)
- ABF Calculations Question 1 McGuire, Kelly (Thu May 24 2018 - 12:10:34 CDT)
- Adding a hydrogen through the command line and Molefacture David Stevens (Thu May 24 2018 - 11:58:39 CDT)
- Scan Torsions McGuire, Kelly (Wed May 23 2018 - 13:28:01 CDT)
- Finding Local Kinetic Energy or Velocities Nick Palmer (Wed May 23 2018 - 10:28:53 CDT)
- NAMD Energy Plugin: Cutoff error Peter Mawanga (Wed May 23 2018 - 08:42:05 CDT)
- SPC/E Water models Mani Kandan (Wed May 23 2018 - 04:36:36 CDT)
- How autoionzie plugin works? Mani Kandan (Tue May 22 2018 - 12:44:47 CDT)
- Re: How autoionzie plugin works? João Ribeiro (Tue May 22 2018 - 13:25:25 CDT)
- Re: How autoionzie plugin works? João Ribeiro (Tue May 22 2018 - 13:43:05 CDT)
- Re: How autoionzie plugin works? Mani Kandan (Tue May 22 2018 - 13:46:29 CDT)
- Re: How autoionzie plugin works? João Ribeiro (Tue May 22 2018 - 14:18:21 CDT)
- Re: How autoionzie plugin works? Mani Kandan (Tue May 22 2018 - 14:58:21 CDT)
- Re: How autoionzie plugin works? Peter Freddolino (Tue May 22 2018 - 21:43:40 CDT)
- Re: How autoionzie plugin works? João Ribeiro (Tue May 22 2018 - 13:43:05 CDT)
- Re: How autoionzie plugin works? João Ribeiro (Tue May 22 2018 - 13:25:25 CDT)
- How can I redefine fragments in VMD fan li (Tue May 22 2018 - 11:43:38 CDT)
- RMSF_Calculation_Error_Using script Rinky Parakra (Mon May 21 2018 - 19:32:48 CDT)
- Need FFTK Help from Someone w/ Gaussian Alex Saad-Falcon (Mon May 21 2018 - 13:05:32 CDT)
- FFTK Tutorial Charge Opt Question McGuire, Kelly (Fri May 18 2018 - 23:59:48 CDT)
- RE: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Sat May 19 2018 - 13:43:41 CDT)
- Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Sat May 19 2018 - 14:21:07 CDT)
- RE: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Sat May 19 2018 - 15:26:15 CDT)
- Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Sat May 19 2018 - 21:31:37 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question João Ribeiro (Mon May 21 2018 - 09:45:36 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Mon May 21 2018 - 11:11:40 CDT)
- RE: Re: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Mon May 21 2018 - 12:05:26 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Mon May 21 2018 - 12:44:05 CDT)
- Re: Re: FFTK Tutorial Charge Opt Question João Ribeiro (Mon May 21 2018 - 13:47:15 CDT)
- Re: FFTK Tutorial Charge Opt Question McGuire, Kelly (Sat May 19 2018 - 14:21:07 CDT)
- RE: FFTK Tutorial Charge Opt Question Vermaas, Joshua (Sat May 19 2018 - 13:43:41 CDT)
- FFTK Charge Optimization McGuire, Kelly (Fri May 18 2018 - 11:58:14 CDT)
- invalid command name "La::mevsvd_br" SHAHEE ISLAM (Fri May 18 2018 - 00:43:54 CDT)
- rst7 as input file bug James Kress (Thu May 17 2018 - 18:36:27 CDT)
- QwikMD Add Topo+Param Question McGuire, Kelly (Thu May 17 2018 - 12:40:08 CDT)
- .js file format for point cloud data TRINH Minh Hieu (Wed May 16 2018 - 20:35:56 CDT)
- diffusion coefficient tool Suresh Ghimire (Wed May 16 2018 - 02:32:55 CDT)
- How can I create the water Solvate in vmd fan li (Tue May 15 2018 - 16:59:11 CDT)
- Error: vecscale: parameters must have data dalpizar_at_fbio.uh.cu (Fri May 11 2018 - 15:17:11 CDT)
- Error loading .phi file Andy Liu (Thu May 10 2018 - 19:03:43 CDT)
- Diagnosing vmd startup problems Goedde, Chris (Mon May 07 2018 - 11:29:36 CDT)
- A fill for "bodies" build out of surfacs Daniel Mller (Mon May 07 2018 - 05:12:40 CDT)
- VMD in OS X Yosemite version 10.1.1.5 locuswendy (Sat May 05 2018 - 23:04:19 CDT)
- Coloring Scheme Spectrum McGuire, Kelly (Sat May 05 2018 - 09:49:09 CDT)
- Re: Coloring Scheme Spectrum John Stone (Sun May 06 2018 - 21:13:55 CDT)
- Re: Coloring Scheme Spectrum John Stone (Sun May 06 2018 - 21:20:13 CDT)
- Re: Coloring Scheme Spectrum McGuire, Kelly (Sun May 06 2018 - 23:34:32 CDT)
- Re: Coloring Scheme Spectrum Giacomo Fiorin (Mon May 07 2018 - 07:33:02 CDT)
- Re: Coloring Scheme Spectrum McGuire, Kelly (Mon May 07 2018 - 09:47:44 CDT)
- Re: Coloring Scheme Spectrum Andrew Dalke (Mon May 07 2018 - 11:10:24 CDT)
- Re: Coloring Scheme Spectrum McGuire, Kelly (Mon May 07 2018 - 11:57:26 CDT)
- Re: Coloring Scheme Spectrum John Stone (Sun May 06 2018 - 21:13:55 CDT)
- RMSD Question McGuire, Kelly (Fri May 04 2018 - 17:47:31 CDT)
- How to change the coordinates of the dummy atoms in readvarxyz Remya Ann (Fri May 04 2018 - 10:55:35 CDT)
- Automating VMD Oscar Bastidas (Thu May 03 2018 - 16:51:01 CDT)
- QwikMD - psfgen: patch and autogenerate Rose, Stuart Wallace (Thu May 03 2018 - 11:50:07 CDT)
- Unable to load molecule 김민재 (Thu May 03 2018 - 05:16:28 CDT)
- CellPack McGuire, Kelly (Wed May 02 2018 - 23:03:31 CDT)
- Re: CellPack John Stone (Thu May 03 2018 - 10:22:22 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 11:20:26 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 18:53:18 CDT)
- RE: CellPack Vermaas, Joshua (Thu May 03 2018 - 19:57:08 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 20:11:39 CDT)
- Re: CellPack John Stone (Thu May 03 2018 - 20:35:46 CDT)
- Re: CellPack McGuire, Kelly (Thu May 03 2018 - 20:41:58 CDT)
- Re: CellPack Ajasja Ljubetič (Fri May 04 2018 - 03:17:20 CDT)
- Re: CellPack John Stone (Fri May 04 2018 - 11:02:02 CDT)
- Re: CellPack McGuire, Kelly (Fri May 04 2018 - 11:06:12 CDT)
- Re: CellPack John Stone (Thu May 03 2018 - 10:22:22 CDT)
- Displaying gaussian cube file produced by Delphi Andy Liu (Mon Apr 30 2018 - 17:04:24 CDT)
- coloring method User for graphics like tubes? Daniel Mller (Mon Apr 30 2018 - 04:39:25 CDT)
- DCD Question McGuire, Kelly (Sun Apr 29 2018 - 16:45:35 CDT)
- Waters per residue in ion channel McGuire, Kelly (Sat Apr 28 2018 - 18:26:48 CDT)
- excluding atoms Doaa Saayed (Sat Apr 28 2018 - 05:29:58 CDT)
- RMSD of lipid molecules Sadegh Faramarzi Ganjabad (Thu Apr 26 2018 - 23:30:21 CDT)
- Re: RMSD of lipid molecules Giacomo Fiorin (Fri Apr 27 2018 - 07:01:36 CDT)
- Re: RMSD of lipid molecules Brian Radak (Fri Apr 27 2018 - 08:59:34 CDT)
- Re: RMSD of lipid molecules Udaya Dahal (Fri Apr 27 2018 - 09:21:39 CDT)
- Re: RMSD of lipid molecules Sadegh Faramarzi Ganjabad (Fri Apr 27 2018 - 11:38:34 CDT)
- Re: RMSD of lipid molecules Ashar Malik (Fri Apr 27 2018 - 12:23:12 CDT)
- Re: RMSD of lipid molecules Sadegh Faramarzi Ganjabad (Fri Apr 27 2018 - 12:25:06 CDT)
- Re: RMSD of lipid molecules Ashar Malik (Fri Apr 27 2018 - 12:31:57 CDT)
- Re: RMSD of lipid molecules Giacomo Fiorin (Fri Apr 27 2018 - 12:41:46 CDT)
- Re: RMSD of lipid molecules Brian Radak (Fri Apr 27 2018 - 08:59:34 CDT)
- Re: RMSD of lipid molecules Giacomo Fiorin (Fri Apr 27 2018 - 07:01:36 CDT)
- Measure Distance Script Question McGuire, Kelly (Thu Apr 26 2018 - 23:27:47 CDT)
- Re: Fixing VMD build with recent FLTK on macOS John Stone (Thu Apr 26 2018 - 17:30:17 CDT)
- FEP with intermediary segments Francesco Pietra (Thu Apr 26 2018 - 10:20:21 CDT)
- MOPAC Orbitals McGuire, Kelly (Tue Apr 24 2018 - 12:13:29 CDT)
- NAMD Developer Workshop at Urbana IL, June 11-12, 2018 João Ribeiro (Tue Apr 24 2018 - 08:57:57 CDT)
- PSFGEN 1.6.4 autogenerate PATCH keyword not available Thomas C. Bishop (Mon Apr 23 2018 - 19:57:47 CDT)
- Resp on VMD SM Bargeen A Turzo (Mon Apr 23 2018 - 15:46:20 CDT)
- RESP2.4 and FFTK SM Bargeen A Turzo (Mon Apr 23 2018 - 14:22:38 CDT)
- RESP PATH SM Bargeen A Turzo (Mon Apr 23 2018 - 12:49:56 CDT)
- Calculating Diffusion Coefficient Using VMD Sonibare, Kolawole (Mon Apr 23 2018 - 10:58:56 CDT)
- Re: Calculating Diffusion Coefficient Using VMD Giacomo Fiorin (Mon Apr 23 2018 - 11:12:49 CDT)
- Calculating Diffusion Coefficient using VMD Sonibare, Kolawole (Mon Apr 23 2018 - 08:56:34 CDT)
- PDB Question McGuire, Kelly (Sun Apr 22 2018 - 18:40:00 CDT)
- dynamic cross-correlation Map(DCCM)? Gu, Wenze (Sat Apr 21 2018 - 21:48:02 CDT)
- Problem using topo writegmxtop fan li (Sat Apr 21 2018 - 08:57:35 CDT)
- VMD Install Question McGuire, Kelly (Fri Apr 20 2018 - 13:24:08 CDT)
- problem with adding ions Olya Kravchenko (Fri Apr 20 2018 - 12:33:14 CDT)
- VMD 1.9.4 Linux McGuire, Kelly (Fri Apr 20 2018 - 10:57:29 CDT)
- the number of hydrogen bonds per residue Qasim Pars (Fri Apr 20 2018 - 08:27:07 CDT)
- Smoothing McGuire, Kelly (Thu Apr 19 2018 - 16:12:01 CDT)
- macosx 10.6 compilation issue andre padilla (Thu Apr 19 2018 - 07:23:47 CDT)
- About loading multiple XYZ trajectories Gulce Kalyoncu (Wed Apr 18 2018 - 10:51:04 CDT)
- vmd tcl script writing issue Sandip Mondal (Wed Apr 18 2018 - 09:29:43 CDT)
- making a movie of multiple molecules Sahithya Iyer (Wed Apr 18 2018 - 08:50:54 CDT)
- NAMD Color By Velocity McGuire, Kelly (Tue Apr 17 2018 - 13:28:19 CDT)
- source download andre padilla (Mon Apr 16 2018 - 08:17:40 CDT)
- reverting coarse-grained system to all-atom system Rabeta Yeasmin (Sun Apr 15 2018 - 18:57:10 CDT)
- Re: namd-l: Re: Bug with FEP? Francesco Pietra (Sun Apr 15 2018 - 02:48:10 CDT)
- build virus envelope sunyeping (Thu Apr 12 2018 - 23:34:06 CDT)
- hollow sphere Doaa Saayed (Thu Apr 12 2018 - 12:14:56 CDT)
- Change in reaction coordinate value after doing solvation from that of the crystal structure Sheena Singh (Thu Apr 12 2018 - 10:07:09 CDT)
- water molecules amber force field Stefano Guglielmo (Thu Apr 12 2018 - 09:03:51 CDT)
- Diffusion Coefficient calculation Jeams Anderson (Wed Apr 11 2018 - 08:14:59 CDT)
- (no subject) JOHN FLANAGAN (Tue Apr 10 2018 - 16:36:48 CDT)
- Drastically different number of suboptimal paths in similar simulations amin sagar (Tue Apr 10 2018 - 10:17:54 CDT)
- Proper use of psfgen "mutate"? Brian Radak (Tue Apr 10 2018 - 08:58:47 CDT)
- Re: namd-l: ParseFEP error with FEP in segments at different lambda schedule Brian Radak (Tue Apr 10 2018 - 07:56:40 CDT)
- ParseFEP error with FEP in segments at different lambda schedule Francesco Pietra (Sun Apr 08 2018 - 08:46:35 CDT)
- TCBG Workshop lecture videos João Ribeiro (Sat Apr 07 2018 - 10:45:12 CDT)
- Query for coarse grain system Abhishek TYAGI (Thu Apr 05 2018 - 09:53:36 CDT)
- unable to install VMD on OSX Raag Saluja (Wed Apr 04 2018 - 12:40:18 CDT)
- Regarding RDF and Cordination number calculatin Jeams Anderson (Wed Apr 04 2018 - 02:40:42 CDT)
- ATOM VELOCITY HIGH ERROR in Coarse grained Simulation RAKESH (Fri Mar 30 2018 - 08:39:40 CDT)
- Secondary structure not being rendered for 1O82 Simon Dürr (Fri Mar 30 2018 - 04:56:50 CDT)
- Connecting VMD to a supercomputer center SM Bargeen A Turzo (Thu Mar 29 2018 - 14:04:59 CDT)
- Solvent PDB and PSF Files Alex Saad-Falcon (Thu Mar 29 2018 - 10:50:45 CDT)
- Coloring of a trajectory with atom types more than 9 Amin Koochaki (Thu Mar 29 2018 - 05:12:36 CDT)
- Is there a way to create atom selection for a list of atom indices? Jeffrey A Tibbitt (Thu Mar 29 2018 - 01:43:43 CDT)
- Fwd: Protein backbone representation for non standard residues / molecules Dallas Warren (Wed Mar 28 2018 - 22:21:46 CDT)
- labels with sub/superscripts or even symbols sperez14_at_us.es (Tue Mar 27 2018 - 01:50:05 CDT)
- Using radial coloring method from user-defined center Miguel Caro (Mon Mar 26 2018 - 10:09:27 CDT)
- NAMD simulation Denish Poudyal (Sun Mar 25 2018 - 20:25:03 CDT)
- i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster??? Denish Poudyal (Sun Mar 25 2018 - 20:22:34 CDT)
- Re: i thought I could run a 100 ns NAMD simulation in my laptop for a protein-hormone system containing around 2000 atoms in its pdb file(4lnx.pdb). But even to run a simulation for four hundred fifty thousand steps, it has taken almost 4700 minutes. is this normal or its low? the device has 4 cores with 16 gigs of ram and 4 gigs of gpu(amd). Or any suggestions to run it faster??? Ashar Malik (Sun Mar 25 2018 - 20:44:48 CDT)
- Binding free energy calculations varun dewaker (Sat Mar 24 2018 - 08:12:17 CDT)
- Regarding installation of DruGui SM Bargeen A Turzo (Sat Mar 24 2018 - 06:30:29 CDT)
- Regarding Installation of DruGui SM Bargeen A Turzo (Fri Mar 23 2018 - 23:23:04 CDT)
- FFTK, recognize wildcard atom types in forcefields Bryan Roessler (Fri Mar 23 2018 - 19:38:06 CDT)
- Parallelization to an axis Sandip Mondal (Fri Mar 23 2018 - 09:31:48 CDT)
- Re: Parallelization to an axis Axel Kohlmeyer (Fri Mar 23 2018 - 09:57:52 CDT)
- Re: Parallelization to an axis Sandip Mondal (Fri Mar 23 2018 - 12:42:45 CDT)
- Re: Parallelization to an axis Christian Leitold (Fri Mar 23 2018 - 14:17:58 CDT)
- Re: Parallelization to an axis Sandip Mondal (Sat Mar 24 2018 - 00:04:49 CDT)
- Re: Parallelization to an axis Christian Leitold (Sat Mar 24 2018 - 00:56:46 CDT)
- Re: Parallelization to an axis Sandip Mondal (Mon Mar 26 2018 - 01:26:23 CDT)
- Re: Parallelization to an axis Sandip Mondal (Fri Mar 23 2018 - 12:42:45 CDT)
- Re: Parallelization to an axis Vermaas, Joshua (Fri Mar 23 2018 - 12:26:59 CDT)
- Re: Parallelization to an axis Axel Kohlmeyer (Fri Mar 23 2018 - 09:57:52 CDT)
- ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 02:05:41 CDT)
- Fwd: ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 09:00:15 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Fri Mar 23 2018 - 10:48:17 CDT)
- Re: Fwd: ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 15:31:58 CDT)
- Fwd: Fwd: ParseFEP for restating FEP Francesco Pietra (Sun Mar 25 2018 - 04:24:50 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Mon Mar 26 2018 - 11:57:28 CDT)
- Re: Fwd: ParseFEP for restating FEP Francesco Pietra (Mon Mar 26 2018 - 15:57:11 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Mon Mar 26 2018 - 16:13:19 CDT)
- Re: Fwd: ParseFEP for restating FEP Brian Radak (Fri Mar 23 2018 - 10:48:17 CDT)
- Fwd: ParseFEP for restating FEP Francesco Pietra (Fri Mar 23 2018 - 09:00:15 CDT)
- [VMD-NAMD] Question about Dipole of DNA / Dipole Moment Watcher Plugin The Cromicus Productions (Thu Mar 22 2018 - 18:17:30 CDT)
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- Changing isosurface wireframe thickness when rendering with TachyonL Rune Thomas Kidmose (Wed Mar 21 2018 - 07:39:19 CDT)
- Command to save visualization state. sperez14_at_us.es (Wed Mar 21 2018 - 05:47:38 CDT)
- polyhedra representation + periodic images sperez14_at_us.es (Wed Mar 21 2018 - 05:44:55 CDT)
- Average structure Williams Miranda (Wed Mar 21 2018 - 01:37:13 CDT)
- 2-Dimensional map of a lipid molecule around the protein Shashank Ranjan Srivastava (Wed Mar 21 2018 - 01:16:55 CDT)
- Re: 2-Dimensional map of a lipid molecule around the protein Giacomo Fiorin (Wed Mar 21 2018 - 09:06:36 CDT)
- Propagating PDB coordinates using Quaternion matrix Peter Mawanga (Tue Mar 20 2018 - 09:29:06 CDT)
- Re: Propagating PDB coordinates using Quaternion matrix Ashar Malik (Tue Mar 20 2018 - 10:00:57 CDT)
- Adding Hydroxide Ions to the simulation box Aman Jindal (Tue Mar 20 2018 - 01:56:10 CDT)
- Text mode data extraction without trajectory update Udaya Dahal (Sun Mar 18 2018 - 01:31:36 CDT)
- "'Hands-on" Workshop on Computational Biophysics at Pittsburgh, PA, May 21-25, 2018 João Ribeiro (Fri Mar 16 2018 - 15:47:15 CDT)
- Occupancy volume quantitation Lizelle Lubbe (Fri Mar 16 2018 - 09:31:37 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Fri Mar 16 2018 - 10:10:31 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 02:47:27 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Mon Mar 19 2018 - 06:41:46 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 07:06:41 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Mon Mar 19 2018 - 07:12:06 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 07:15:09 CDT)
- Re: Occupancy volume quantitation Lizelle Lubbe (Mon Mar 19 2018 - 02:47:27 CDT)
- Re: Occupancy volume quantitation Giacomo Fiorin (Fri Mar 16 2018 - 10:10:31 CDT)
- how to merge two pdb in a single file SHAHEE ISLAM (Fri Mar 16 2018 - 09:20:03 CDT)
- non-heme iron coordination with His in NAMD2 Anna Petroff (Thu Mar 15 2018 - 10:33:15 CDT)
- Query for the VolMap plugin Saikat Pal (Thu Mar 15 2018 - 07:16:49 CDT)
- Writing all transformed coordinates into single file Peter Mawanga (Wed Mar 14 2018 - 14:23:05 CDT)
- Membrane tutorial regarding RAHUL SURESH (Wed Mar 14 2018 - 10:54:23 CDT)
- Building plugins with _USE_ZLIB (how to activate preprocessor macro) Christian Leitold (Tue Mar 13 2018 - 14:19:48 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 14:29:20 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Christian Leitold (Tue Mar 13 2018 - 15:25:36 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Axel Kohlmeyer (Tue Mar 13 2018 - 16:32:37 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 16:48:50 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Axel Kohlmeyer (Tue Mar 13 2018 - 16:53:08 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 17:10:13 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) Axel Kohlmeyer (Tue Mar 13 2018 - 16:30:12 CDT)
- Re: Building plugins with _USE_ZLIB (how to activate preprocessor macro) John Stone (Tue Mar 13 2018 - 14:29:20 CDT)
- Graphics card requirement for VMD Debostuti Ghoshdastidar (Tue Mar 13 2018 - 07:05:32 CDT)
- Graphics Requirement for VMD Debostuti Ghoshdastidar (Tue Mar 13 2018 - 06:29:47 CDT)
- MDFF multiple PDB and PSF Rune Thomas Kidmose (Mon Mar 12 2018 - 09:14:32 CDT)
- (no subject) shyam sharma (Fri Mar 09 2018 - 01:15:48 CST)
- How to hide water in mdcrd file? Gu, Wenze (Thu Mar 08 2018 - 12:48:00 CST)
- VMD quit unexpectedly on Mac Gu, Wenze (Thu Mar 08 2018 - 12:42:19 CST)
- (no subject) shyam sharma (Thu Mar 08 2018 - 06:29:59 CST)
- Creating VR-movies with tachyon renderer Per Larsson (Thu Mar 08 2018 - 03:49:38 CST)
- Multiseq: Perform peptide trajectory clustering Peter Mawanga (Wed Mar 07 2018 - 11:09:19 CST)
- TachyonL-optix rendering question Rune Thomas Kidmose (Wed Mar 07 2018 - 09:49:40 CST)
- Re: namd-l: Fwd: parseFEP domain error Francesco Pietra (Wed Mar 07 2018 - 08:39:49 CST)
- VMD Segfault Fedora 27 iamcool777able . (Tue Mar 06 2018 - 13:12:01 CST)
- Creating VR-movies with tachyon renderer Per Larsson (Tue Mar 06 2018 - 06:52:54 CST)
- Re: Creating VR-movies with tachyon renderer Vermaas, Joshua (Tue Mar 06 2018 - 11:53:35 CST)
- Re: Creating VR-movies with tachyon renderer Dallas Warren (Tue Mar 06 2018 - 14:23:07 CST)
- Re: Creating VR-movies with tachyon renderer Per Larsson (Wed Mar 07 2018 - 02:09:16 CST)
- Re: Creating VR-movies with tachyon renderer Per Larsson (Wed Mar 07 2018 - 08:09:49 CST)
- Re: Creating VR-movies with tachyon renderer Vermaas, Joshua (Wed Mar 07 2018 - 12:20:30 CST)
- Re: Creating VR-movies with tachyon renderer Per Larsson (Wed Mar 07 2018 - 14:24:31 CST)
- Re: Creating VR-movies with tachyon renderer Dallas Warren (Wed Mar 07 2018 - 16:10:17 CST)
- Re: Creating VR-movies with tachyon renderer John Stone (Thu Mar 15 2018 - 00:03:16 CDT)
- Ph.D. and Post-doc positions in molecular simulations and structural bioinformatics Jan Brezovsky (Mon Mar 05 2018 - 11:10:28 CST)
- Running vmd Mahmood Naderan (Sun Mar 04 2018 - 09:20:14 CST)
- Re: Running vmd Giacomo Fiorin (Sun Mar 04 2018 - 13:58:37 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 04:26:16 CST)
- Re: Running vmd Ashar Malik (Mon Mar 05 2018 - 05:00:48 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 06:30:24 CST)
- Re: Running vmd Ashar Malik (Mon Mar 05 2018 - 06:54:44 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 09:14:11 CST)
- Re: Running vmd Axel Kohlmeyer (Mon Mar 05 2018 - 09:50:16 CST)
- Re: Running vmd John Stone (Mon Mar 05 2018 - 09:59:51 CST)
- Re: Running vmd Mahmood Naderan (Tue Mar 06 2018 - 11:55:43 CST)
- Re: Running vmd Axel Kohlmeyer (Mon Mar 05 2018 - 04:55:07 CST)
- Re: Running vmd Mahmood Naderan (Mon Mar 05 2018 - 04:26:16 CST)
- Re: Running vmd Giacomo Fiorin (Sun Mar 04 2018 - 13:58:37 CST)
- netcdf for plugins Mahmood Naderan (Sun Mar 04 2018 - 07:11:08 CST)
- vmd error related to tcl.h Mahmood Naderan (Sat Mar 03 2018 - 13:47:07 CST)
- Problem reading mdcrd file Gu, Wenze (Sat Mar 03 2018 - 10:52:29 CST)
- VMD stops furing loading of DCD trajectory Rose, Stuart Wallace (Fri Mar 02 2018 - 16:07:07 CST)
- parseFEP domain error Francesco Pietra (Fri Mar 02 2018 - 09:47:42 CST)
- PSFGEN: Residue addition not working Peter Mawanga (Fri Mar 02 2018 - 04:05:45 CST)
- visualization of a normal mode analysis Albert (Wed Feb 28 2018 - 14:44:25 CST)
- Unable to build a symmetric (m=0) zigzag BN nanotube in VMD Aman Jindal (Wed Feb 28 2018 - 01:29:20 CST)
- Error merging the pdbs and psfs Denish Poudyal (Mon Feb 26 2018 - 20:26:08 CST)
- MDFF rotation Rune Thomas Kidmose (Mon Feb 26 2018 - 03:48:08 CST)
- video 360 vmd Laine Tereza (Fri Feb 23 2018 - 14:37:09 CST)
- Atom type information is not incremented after merging two molecules. Manoj Dhiman (Fri Feb 23 2018 - 03:34:16 CST)
- VISUALIZE HYDROGEN BOND BETWEEN PROTEIN AND LIGAND Neha Gupta (Wed Feb 21 2018 - 05:08:07 CST)
- VMD crashes on Macbook with Intel Graphics theblueone_at_web.de (Wed Feb 21 2018 - 02:27:47 CST)
- How to identify the index number of some particular atoms Jeams Anderson (Tue Feb 20 2018 - 01:31:18 CST)
- VMD TCL Script to save last frame of a trajectory using bash+tcl scripts Dive, Aniruddha Mukund (Mon Feb 19 2018 - 16:37:33 CST)
- salvation of heavy water Suresh Ghimire (Mon Feb 19 2018 - 09:12:33 CST)
- Obtaining VMD view matrices for tcl script Rune Thomas Kidmose (Mon Feb 19 2018 - 01:18:59 CST)
- Re: problem compiling vmd from source. sperez14_at_us.es (Sun Feb 18 2018 - 14:10:24 CST)
- FFTK Bond/Angle Optimization issue with namd2 Gabi Heller (Fri Feb 16 2018 - 06:05:00 CST)
- setting up POPS or POPG in VMD Rabeta Yeasmin (Mon Feb 12 2018 - 16:32:33 CST)
- Re: setting up POPS or POPG in VMD Brian Radak (Tue Feb 13 2018 - 10:31:47 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:05:15 CST)
- Re: setting up POPS or POPG in VMD amin sagar (Tue Feb 13 2018 - 13:36:17 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:41:25 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:44:48 CST)
- Re: setting up POPS or POPG in VMD Giacomo Fiorin (Tue Feb 13 2018 - 13:29:09 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:36:35 CST)
- Re: setting up POPS or POPG in VMD Rabeta Yeasmin (Tue Feb 13 2018 - 13:05:15 CST)
- Re: setting up POPS or POPG in VMD Brian Radak (Tue Feb 13 2018 - 10:31:47 CST)
- Ph.D. and Post-doc positions in molecular simulations and structural bioinformatics Jan Brezovsky (Sun Feb 11 2018 - 15:58:39 CST)
- Color scale bar Malvika K (Thu Feb 08 2018 - 11:15:46 CST)
- how to align simulated peptide in complex structure. Seera Suryanarayana (Thu Feb 08 2018 - 01:13:20 CST)
- "Hands-on" Workshop on Enhanced Sampling and Free-Energy Calculation at Urbana, IL, September 10-14, 2018 João Ribeiro (Wed Feb 07 2018 - 10:46:51 CST)
- NAMD Developer Workshop at Urbana IL, June 11-12, 2018 João Ribeiro (Wed Feb 07 2018 - 10:46:41 CST)
- "Hands-On" Workshop on QM/MM Simulations at Urbana, IL, April 5-7, 2018 João Ribeiro (Wed Feb 07 2018 - 10:44:57 CST)
- metalloprotein simulation t.shivam_at_iitg.ernet.in (Wed Feb 07 2018 - 10:11:39 CST)
- Can specden produce the autocorrelation and not only the powerspectrum? sperez14_at_us.es (Tue Feb 06 2018 - 12:13:34 CST)
- Question regarding VMD In-situ Remote Visualization on clusters Feng Chen (Mon Feb 05 2018 - 11:28:41 CST)
- How to copy/paste a membrane patch to create a larger membrane? thiagorrg UFC (Mon Feb 05 2018 - 08:34:15 CST)
- Re: How to copy/paste a membrane patch to create a larger membrane? Giacomo Fiorin (Mon Feb 05 2018 - 08:55:50 CST)
- Re: How to copy/paste a membrane patch to create a larger membrane? Stefan Doerr (Mon Feb 05 2018 - 09:10:55 CST)
- Re: How to copy/paste a membrane patch to create a larger membrane? thiagorrg UFC (Mon Feb 05 2018 - 12:34:43 CST)
- "adding polymer to CNT" soroush ziaei (Fri Feb 02 2018 - 07:21:00 CST)
- AutoPSF formatted PDB: wrong residue order Bryan Roessler (Fri Feb 02 2018 - 04:09:33 CST)
- OS X Connection between VMD and AutoIMD De Winter Hans (Thu Feb 01 2018 - 03:17:27 CST)
- Affordable 3D stereo. sperez14_at_us.es (Tue Jan 30 2018 - 06:12:02 CST)
- Superimpose Protein Structure Wong Li Zhe (Tue Jan 30 2018 - 03:20:14 CST)
- Molecule limit Windle,Stephen (Mon Jan 29 2018 - 18:20:31 CST)
- disulfide bonds are not showimg in vmd Shahee Islam (Mon Jan 29 2018 - 00:01:25 CST)
- Having problem with geometrical structure parinaz bashirbanaem (Sun Jan 28 2018 - 04:16:44 CST)
- Colvars module doesn't work Michael Morin (Fri Jan 26 2018 - 14:11:29 CST)
- Vmd coefficient tool Suresh Ghimire (Thu Jan 25 2018 - 03:39:56 CST)
- Alignment issues Heather Carson (Wed Jan 24 2018 - 07:18:44 CST)
- Superimpose Structures Wong Li Zhe (Tue Jan 23 2018 - 20:49:59 CST)
- MSD for water inside CNT Suresh Ghimire (Tue Jan 23 2018 - 02:28:15 CST)
- Re: [phenixbb] secondary structure presentation in VMD CPMAS Chen (Mon Jan 22 2018 - 15:58:44 CST)
- VMD ffTK: The determination of a correct spin multiplicity value Ern Ong (Mon Jan 22 2018 - 02:14:54 CST)
- saving velocities with VMD Marcela Madrid (Sun Jan 21 2018 - 14:55:30 CST)
- secondary structure new cartoon presentation CPMAS Chen (Sun Jan 21 2018 - 08:55:56 CST)
- VMD ffTK plugin: Error termination occurred at Gaussian input files generated for water interaction Ern Ong (Sat Jan 20 2018 - 07:09:26 CST)
- MultiSeq conflicting with DYLD_LYBRARY_PATH fabio trovato (Thu Jan 18 2018 - 04:05:02 CST)
- Parameter and topology Suresh Ghimire (Wed Jan 17 2018 - 23:59:37 CST)
- Isosurface wireframe & solid surface representation Vincent Ustach (Wed Jan 17 2018 - 10:02:22 CST)
- Rotate a specific residue and save the coordinates in VMD Roshan Shrestha (Tue Jan 16 2018 - 22:25:01 CST)
- catdcd plugin for Windows users Ern Ong (Tue Jan 16 2018 - 00:51:57 CST)
- View sidechains in VMD Roshan Shrestha (Mon Jan 15 2018 - 22:51:22 CST)
- contact map in Rainbow scale Roshan Shrestha (Fri Jan 12 2018 - 11:55:56 CST)
- Loading multiple dcd files crashes VMD Peter Mawanga (Thu Jan 11 2018 - 07:46:33 CST)
- selecting residues within 5-10A of another molecule Rabeta Yeasmin (Wed Jan 10 2018 - 15:22:26 CST)
- Re: selecting residues within 5-10A of another molecule Vermaas, Joshua (Wed Jan 10 2018 - 17:02:01 CST)
- Re: selecting residues within 5-10A of another molecule amin sagar (Wed Jan 10 2018 - 23:57:28 CST)
- Re: selecting residues within 5-10A of another molecule Ashar Malik (Wed Jan 10 2018 - 23:05:01 CST)
- How to calculate head group and acyl chain contact (separately) within 5 Anstrom of a particular protein residue? Robert Nairn (Wed Jan 10 2018 - 08:20:14 CST)
- having problem with disulfide bond Shahee Islam (Tue Jan 09 2018 - 00:04:01 CST)
- ppm image conversion gpu dependent? Dow Hurst (Mon Jan 08 2018 - 17:22:03 CST)
- (no subject) Suresh Ghimire (Sat Jan 06 2018 - 06:06:46 CST)
- (no subject) Suresh Ghimire (Sat Jan 06 2018 - 05:49:07 CST)
- vector passing through a point and parallel to z axis, TCL code Rabeta Yeasmin (Thu Jan 04 2018 - 18:57:39 CST)
- Improper terms in topology files processed by psfgen Jadzia Dax (Tue Jan 02 2018 - 01:29:30 CST)
- Re: Improper terms in topology files processed by psfgen Peter Freddolino (Tue Jan 02 2018 - 09:31:43 CST)
- Re: Improper terms in topology files processed by psfgen Jadzia Dax (Wed Jan 03 2018 - 03:15:39 CST)
- Re: Improper terms in topology files processed by psfgen Brian Radak (Fri Jan 05 2018 - 10:40:00 CST)
- Re: Improper terms in topology files processed by psfgen Peter Freddolino (Fri Jan 05 2018 - 11:56:31 CST)
- Re: Improper terms in topology files processed by psfgen Vermaas, Joshua (Fri Jan 05 2018 - 12:23:30 CST)
- Re: Improper terms in topology files processed by psfgen Jadzia Dax (Wed Jan 03 2018 - 03:15:39 CST)
- Re: Improper terms in topology files processed by psfgen Peter Freddolino (Tue Jan 02 2018 - 09:31:43 CST)
- Problem drawing cylinders with a foreach loop - TCL syntax issue. Jeffrey