VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jun 05 2006 - 10:30:08 CDT

Vineet,
  Which representation were you using with those selections?

  John Stone
  vmd_at_ks.uiuc.edu

On Sat, Jun 03, 2006 at 05:58:02PM +0200, Vineet Pande wrote:
> Yes. even if use "nucleic not solvent" or "all not solvent" selection while
> displaying in *default display*; VMD does not show the molecule completely.
>
> Vineet
>
> ---
> Vineet Pande, Ph.D.
> Karolinska Institute, Stockholm
>
>
> On 6/2/06, Leonardo G. Trabuco <ltrabuco_at_ks.uiuc.edu> wrote:
> >
> >On Fri, Jun 02, 2006 at 04:17:51PM +0200, Vineet Pande wrote:
> >> Hi,
> >> I am using VMD for WIN32, version 1.8.4b10 to display a simple CHARMM
> >> trajectory of a nucleic acid duplex. However, in the graphics, I can't
> >see
> >> one of the terminal nucleotides in both the strands; the MD movie runs
> >fine
> >> however. What could be the problem?
> >
> >Are you using the keyword 'nucleic' in your atom selection? Which
> >representation are you using?
> >
> >Leo
> >
> >--
> >Leonardo Giantini Trabuco
> >Ph.D. candidate
> >Center for Biophysics and Computational Biology
> >University of Illinois at Urbana-Champaign
> > 

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