VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Fri Nov 18 2005 - 13:52:17 CST

Hi,
  The length of the trajectory shouldn't have any effect on the use
of STRIDE, however it's quite possible that STRIDE is failing on your
structure for some reason. Could it be that your atom coordinates
are very large towards the end of the trajectory? (i.e. no coord
wrapping, something like that)

  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Nov 18, 2005 at 02:41:02PM -0500, dimka wrote:
> when I load a short trajectory the secondary structures are computed
> without any problems, but when a long trajectory is loaded (700
> frames) I get an error bellow (both at VMD startup and when I invoke
> "mol ssrecalc top" command.)
>
> ERROR) Unable to find Stride output file: /tmp/fileEg7gB9
> ERROR) Stride::read_stride_record: unable to read output file from Stride
> ERROR) Call to Stride program failed.
>
> Dima 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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