Date: Tue Feb 05 2008 - 06:29:17 CST

Hi all,

I visited the Cluster VMD plugin webpage. I could not understand that it accepts input file types from NMRcluster, Xcluster or R?

Consequently, as John said 'it does not care what care what file the trajectory come from.'

 It means that there is possibility of loading the .xtc files (trajectory files obtained from gromos force-field) to this plugin?

Thanks in advance

-----Original Message-----
From: John Stone <>
To: Francesco Pietra <>
Date: Mon, 7 Jan 2008 01:59:40 -0600
Subject: Re: vmd-l: Cluster analysis

  If you have the other required packages installed, you might try
out the "Cluster" VMD plugin by Luis Gracia at Cornell:

So far as I'm aware, his plugin doesn't care what file format the trajectory
came from.

  John Stone

On Sun, Jan 06, 2008 at 02:27:19AM -0800, Francesco Pietra wrote:
> Is it possible to carry out a cluster analysis with VMD from Amber mdcrd/prmtop
> files? I have combined the various trajectories into a single mdcrd of ca 90
> MB.
> Thanks
> francesco pietra
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