From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Mar 01 2016 - 09:50:56 CST

Hi,
  Use an atom selection, such as "not water" to show only the parts
of your structure that you want to see.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Mar 01, 2016 at 03:34:34PM +0000, Bylund, Tatsiana (NIH/NIAID) [F] wrote:
> Dear all,
> I run simulations with explicit solvent. When I visualize them it's hard
> to see my molecule because of the solvent.
> Can I get rid of the solvent in my dcd file or do something so that I
> actually see the molecule?
> Thank you very much!
> Best regards,
> Tatsiana

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/