From: BIN ZHANG (zhngbn_at_gmail.com)
Date: Wed Apr 22 2009 - 12:25:59 CDT

I think "volmap" should do what you want.

Best,
Bin

On Apr 22, 2009, at 9:24 AM, Raul Araya wrote:

> Dear VMD users:
>
> I'm running simulations of some lipids over an SiO2 surface and I'm
> interested into obtain a density profile from my trajectories. I want
> to obtain the density of the lipids at different distances from the
> surface to observe the average orientation of the lipids over the
> membrane. Has any one developed some TCL script usable with VMD that
> can do this or something alike? Can any one help me please in making
> my own script? Any help will be appreciated
>
>
> Raúl Araya Secchi
> B.Sc Molecular Biotechnology.
> Molecular Biotechnology Engineer.
> Centre for Bioinformatics CBUC,
> Faculty of Biological Sciences, P. Universidad Catolica de Chile
> Portugal # 49 – ZIP 6513492 Santiago – Chile Phone: + 56 2 6862269;
> http://www.cbuc.cl
>