From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Tue Jan 15 2008 - 10:30:10 CST

Hi Lili,
the easiest way to do this is with the measure bond command, documented
at http://www.ks.uiuc.edu/Research/vmd/current/ug/node124.html
Best,
Peter

Lili Peng wrote:
> Hi,
>
> Does anyone know how to calculate end-to-end distance in VMD from a
> PDB file? Currently I do not have a topology or trajectory files,
> only the PDB.
>
> Thanks in advance,
> Lili
>
> --
> Lili X. Peng
> Graduate Student Researcher
> PI: Prof. David Gough
> UCSD Biosensors Laboratory
> UCSD Department of Bioengineering
> 9500 Gilman Dr. 0419
> La Jolla, CA 92093
>