From: Lili Peng (
Date: Mon Jan 14 2008 - 16:37:33 CST


Does anyone know how to calculate end-to-end distance in VMD from a PDB
file? Currently I do not have a topology or trajectory files, only the PDB.

Thanks in advance,

Lili X. Peng
Graduate Student Researcher
PI: Prof. David Gough
UCSD Biosensors Laboratory
UCSD Department of Bioengineering
9500 Gilman Dr. 0419
La Jolla, CA 92093