VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jun 30 2005 - 13:40:35 CDT

Hi,
  You should be able to do something like:
    "not (water or residue 1 to 50)"
or
    "not (resname WAT or residue 1 to 50)"

  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jun 30, 2005 at 05:42:09PM +0100, John wrote:
> Hello vmd users,
>
> I want to visualise specific residues out of my protein when watching my MD
> trajectory. For example to exclude water I use "all not resname WAT". The
> command for residues is "resid" but when I apply it I get syntax error. How
> can I exclude e.g. residues 1-50 plus the water molecules?
>
> Thank you for your help.
>
> Kind regards,
>
> John
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078